ID:

dmo_56

Coordinate:

scaffold_6680:4536936-4537000 +

Confidence:

Known Ortholog

Class:

Canonical miRNA

Genomic Locale:

intron

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.9 -32.4 -32.4

Flybase annnotation

intron [Dmoj\GI12908-in]; utr5 [utr5_plus_7243]

No Repeatable elements found

Sense Strand Reads

CCAAAATCAACCAAACTACCTATCCACTACCTCATCTAACGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGCTTAAACTCTACTAAAAACGAAACTAAAACGAAAATACAAAT

***********************************....(((((.((((((((((((((((((..((((((.((..((........)).)).)))))))))))))))))).)))))).)))))......************************************
Read size # Mismatch Hit Count Total Norm Total M060

embryo

M046

female body

V041

embryo

V056

head

V110

male body
V049

head

..................................................AGATATGTTTGATATTCTTGGTTG........................................................................................... 24 0 1 35476.00 35476 18357 16904 136 43 14 22
..................................................AGATATGTTTGATATTCTTGGTT............................................................................................ 23 0 1 11167.00 11167 7553 3582 3 16 7 6
..................................................AGATATGTTTGATATTCTTGG.............................................................................................. 21 0 1 9598.00 9598 4524 5007 9 34 5 19
..................................................ATATATGTTTGATATTCTTGGTTG........................................................................................... 24 1 1 5032.00 5032 5024 8 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGT............................................................................................. 22 0 1 3781.00 3781 1878 1874 3 16 3 7
..................................................ATATATGTTTGATATTCTTGGTT............................................................................................ 23 1 1 2127.00 2127 2125 2 0 0 0 0
..................................................AGATATGTTTGATATTCTTG............................................................................................... 20 0 1 2026.00 2026 87 1867 1 48 1 22
...................................................GATATGTTTGATATTCTTGGTTG........................................................................................... 23 0 1 1265.00 1265 11 1253 0 1 0 0
...........................................................................................CCCAGGAATCAAACATATTATTA................................................... 23 0 1 1259.00 1259 908 14 234 30 63 10
..................................................ATATATGTTTGATATTCTTGG.............................................................................................. 21 1 1 1235.00 1235 1230 5 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTC............................................................................................ 23 1 1 1117.00 1117 979 138 0 0 0 0
...........................................................................................CCCAGGAATCAAACATATTATT.................................................... 22 0 1 699.00 699 462 42 88 37 48 22
..................................................AGATATGTTTGATATTCTTGGTTGT.......................................................................................... 25 0 1 532.00 532 323 163 31 5 6 4
..................................................ATATATGTTTGATATTCTTGGT............................................................................................. 22 1 1 492.00 492 492 0 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGC............................................................................................. 22 1 1 471.00 471 449 22 0 0 0 0
...................................................GATATGTTTGATATTCTTGG.............................................................................................. 20 0 1 443.00 443 10 433 0 0 0 0
..................................................AGCTATGTTTGATATTCTTGGTTG........................................................................................... 24 1 1 435.00 435 435 0 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTTGA.......................................................................................... 25 1 1 352.00 352 47 304 0 0 0 1
..................................................ATATATGTTTGATATTCTTGGTC............................................................................................ 23 2 1 292.00 292 292 0 0 0 0 0
...................................................GATATGTTTGATATTCTTGGTT............................................................................................ 22 0 1 260.00 260 9 251 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTTT........................................................................................... 24 1 1 236.00 236 75 151 3 3 0 4
..................................................TGATATGTTTGATATTCTTGGTTG........................................................................................... 24 1 1 234.00 234 231 3 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTTC........................................................................................... 24 1 1 215.00 215 81 134 0 0 0 0
..................................................AGCTATGTTTGATATTCTTGGTT............................................................................................ 23 1 1 195.00 195 195 0 0 0 0 0
..................................................AGAGATGTTTGATATTCTTGGTTG........................................................................................... 24 1 1 170.00 170 166 4 0 0 0 0
...................................................GATATGTTTGATATTCTTGGT............................................................................................. 21 0 1 166.00 166 3 163 0 0 0 0
..................................................AGATATTTTTGATATTCTTGGTTG........................................................................................... 24 1 1 161.00 161 153 8 0 0 0 0
..................................................AGACATGTTTGATATTCTTGGTTG........................................................................................... 24 1 1 153.00 153 152 1 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTTGC.......................................................................................... 25 1 1 140.00 140 98 42 0 0 0 0
...................................................GATATGTTTGATATTCTTG............................................................................................... 19 0 1 139.00 139 0 139 0 0 0 0
..................................................AGCTATGTTTGATATTCTTGG.............................................................................................. 21 1 1 118.00 118 116 2 0 0 0 0
..................................................ATAGATGTTTGATATTCTTGGTTG........................................................................................... 24 2 1 117.00 117 117 0 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTA............................................................................................ 23 1 1 111.00 111 69 42 0 0 0 0
...........................................................................................CCCAGGAATCAAACATATTAT..................................................... 21 0 1 103.00 103 29 3 3 44 7 17
..................................................ATCTATGTTTGATATTCTTGGTTG........................................................................................... 24 2 1 102.00 102 102 0 0 0 0 0
..................................................TGATATGTTTGATATTCTTGGTT............................................................................................ 23 1 1 99.00 99 98 1 0 0 0 0
..................................................AGATATGTTTGGTATTCTTGGTTG........................................................................................... 24 1 1 97.00 97 2 95 0 0 0 0
..................................................ATATATGTTTGATATTCTTGGTTGT.......................................................................................... 25 1 1 95.00 95 95 0 0 0 0 0
..................................................AGAAATGTTTGATATTCTTGGTTG........................................................................................... 24 1 1 83.00 83 83 0 0 0 0 0
..................................................AGATATGTTTGATATTCTT................................................................................................ 19 0 1 83.00 83 4 70 0 6 1 2
..................................................AAATATGTTTGATATTCTTGGTTG........................................................................................... 24 1 1 81.00 81 79 1 1 0 0 0
..................................................ACATATGTTTGATATTCTTGGTTG........................................................................................... 24 1 1 79.00 79 76 3 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGA............................................................................................. 22 1 1 77.00 77 5 72 0 0 0 0
..................................................TGATATGTTTGATATTCTTGG.............................................................................................. 21 1 1 67.00 67 67 0 0 0 0 0
......................................................ATGTTTGATATTCTTGGTTG........................................................................................... 20 0 1 65.00 65 6 47 11 1 0 0
....................................................ATATGTTTGATATTCTTGGTTG........................................................................................... 22 0 1 65.00 65 17 48 0 0 0 0
..................................................ATACATGTTTGATATTCTTGGTTG........................................................................................... 24 2 1 65.00 65 65 0 0 0 0 0
..................................................ATATATTTTTGATATTCTTGGTTG........................................................................................... 24 2 1 62.00 62 61 1 0 0 0 0
..................................................AGAGATGTTTGATATTCTTGGTT............................................................................................ 23 1 1 62.00 62 61 1 0 0 0 0
.................................................CAGATATGTTTGATATTCTTGG.............................................................................................. 22 1 1 58.00 58 45 13 0 0 0 0
..................................................ATAAATGTTTGATATTCTTGGTTG........................................................................................... 24 2 1 58.00 58 58 0 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTAA........................................................................................... 24 2 1 57.00 57 17 40 0 0 0 0
.................................................CAGATATGTTTGATATTCTTGGTT............................................................................................ 24 1 1 57.00 57 54 2 0 0 0 1
..................................................AGATATGTTTGATATTCTTGC.............................................................................................. 21 1 1 56.00 56 51 4 0 1 0 0
..................................................AGACATGTTTGATATTCTTGGTT............................................................................................ 23 1 1 55.00 55 54 1 0 0 0 0
..................................................ATATATGTTTGATATTCTTGGC............................................................................................. 22 2 2 54.50 109 109 0 0 0 0 0
..................................................AGATATTTTTGATATTCTTGGTT............................................................................................ 23 1 1 53.00 53 52 1 0 0 0 0
..................................................AGATATGTTTGATATTCTTGTTTG........................................................................................... 24 1 1 51.00 51 34 15 0 1 0 1
..................................................AGATTTGTTTGATATTCTTGGTTG........................................................................................... 24 1 1 50.00 50 49 1 0 0 0 0
...........................................................................................CGCAGGAATCAAACATATTATTA................................................... 23 1 1 49.00 49 49 0 0 0 0 0
...........................................................................................CCAAGGAATCAAACATATTATTA................................................... 23 1 1 48.00 48 48 0 0 0 0 0
...........................................................................................CCCAGGAATCAAACATATTATTAA.................................................. 24 1 1 48.00 48 43 1 1 1 1 1
..................................................AGATATGTTTGATATTCTTGGCTG........................................................................................... 24 1 1 48.00 48 44 4 0 0 0 0
..................................................ATCTATGTTTGATATTCTTGGTT............................................................................................ 23 2 1 47.00 47 47 0 0 0 0 0
..................................................AGCTATGTTTGATATTCTTGGT............................................................................................. 22 1 1 47.00 47 47 0 0 0 0 0
........................................................GTTTGATATTCTTGGTTG........................................................................................... 18 0 1 45.00 45 5 28 12 0 0 0
.................................................CAGATATGTTTGATATTCTTGGTTG........................................................................................... 25 1 1 45.00 45 29 15 0 0 0 1
..................................................AGAGATGTTTGATATTCTTGG.............................................................................................. 21 1 1 44.00 44 43 1 0 0 0 0
..................................................AGAAATGTTTGATATTCTTGGTT............................................................................................ 23 1 1 42.00 42 42 0 0 0 0 0
..................................................AGATATGCTTGATATTCTTGGTTG........................................................................................... 24 1 1 42.00 42 36 6 0 0 0 0
..................................................AGACATGTTTGATATTCTTGG.............................................................................................. 21 1 1 40.00 40 39 1 0 0 0 0
..................................................ATAGATGTTTGATATTCTTGGTT............................................................................................ 23 2 1 40.00 40 40 0 0 0 0 0
..................................................ATATATGTTTGATATTCTTGGTTGC.......................................................................................... 25 2 1 38.00 38 38 0 0 0 0 0
..................................................ATCTATGTTTGATATTCTTGG.............................................................................................. 21 2 1 37.00 37 37 0 0 0 0 0
............................................................................................CCAGGAATCAAACATATTATTA................................................... 22 0 1 35.00 35 26 2 7 0 0 0
...........................................................................................CCCAGGAATCAAACATATTATC.................................................... 22 1 1 35.00 35 35 0 0 0 0 0
.......................................................TGTTTGATATTCTTGGTTG........................................................................................... 19 0 1 35.00 35 0 32 3 0 0 0
..................................................AAATATGTTTGATATTCTTGGTT............................................................................................ 23 1 1 35.00 35 34 1 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTTA........................................................................................... 24 1 1 35.00 35 18 16 1 0 0 0
..................................................AGATATGTTTGCTATTCTTGGTTG........................................................................................... 24 1 1 34.00 34 14 20 0 0 0 0
..................................................TTATATGTTTGATATTCTTGGTTG........................................................................................... 24 2 1 33.00 33 33 0 0 0 0 0
..................................................ACATATGTTTGATATTCTTGGTT............................................................................................ 23 1 1 33.00 33 32 1 0 0 0 0
..................................................AGATATGTTTGATATTCTTGTTG............................................................................................ 23 2 1 33.00 33 27 6 0 0 0 0
..................................................ATAGATGTTTGATATTCTTGG.............................................................................................. 21 2 1 29.00 29 29 0 0 0 0 0
....................................................ATATGTTTGATATTCTTGG.............................................................................................. 19 0 1 29.00 29 9 19 0 0 0 1
..................................................GGATATGTTTGATATTCTTGGTTG........................................................................................... 24 1 1 29.00 29 13 16 0 0 0 0
..................................................AGATAGGTTTGATATTCTTGGTTG........................................................................................... 24 1 1 29.00 29 29 0 0 0 0 0
..................................................ATATATGTTTGATATTCTTG............................................................................................... 20 1 1 28.00 28 25 3 0 0 0 0
..................................................ATAAATGTTTGATATTCTTGGTT............................................................................................ 23 2 1 28.00 28 28 0 0 0 0 0
..................................................AGATATGTTTGATATTCT................................................................................................. 18 0 1 27.00 27 20 5 0 2 0 0
..................................................AGATATGTTTGGTATTCTTGG.............................................................................................. 21 1 1 27.00 27 1 26 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTTGG.......................................................................................... 25 1 1 27.00 27 7 20 0 0 0 0
.....................................................TATGTTTGATATTCTTGGTTG........................................................................................... 21 0 1 27.00 27 4 20 2 0 1 0
..................................................AGATATGTTTGATATCCTTGGTTG........................................................................................... 24 1 1 26.00 26 19 6 0 1 0 0
..................................................AGATTTGTTTGATATTCTTGGTT............................................................................................ 23 1 1 26.00 26 26 0 0 0 0 0
..................................................ATACATGTTTGATATTCTTGGTT............................................................................................ 23 2 1 25.00 25 25 0 0 0 0 0
..................................................AGAGATGTTTGATATTCTTGGT............................................................................................. 22 1 1 25.00 25 24 1 0 0 0 0
..................................................AGATATGTTTGATATTCTTGT.............................................................................................. 21 1 1 25.00 25 11 8 0 4 0 2
..................................................AGATATGCTTGATATTCTTGGTT............................................................................................ 23 1 1 25.00 25 21 4 0 0 0 0
..................................................ATACATGTTTGATATTCTTGG.............................................................................................. 21 2 1 24.00 24 24 0 0 0 0 0
..................................................AAATATGTTTGATATTCTTGG.............................................................................................. 21 1 1 23.00 23 23 0 0 0 0 0
..................................................ACATATGTTTGATATTCTTGG.............................................................................................. 21 1 1 23.00 23 21 2 0 0 0 0
..................................................AGATATGTTTGGTATTCTTGGTT............................................................................................ 23 1 1 23.00 23 4 19 0 0 0 0
......................................................ATGTTTGATATTCTTGGTT............................................................................................ 19 0 1 23.00 23 8 15 0 0 0 0
..................................................AGAAATGTTTGATATTCTTGG.............................................................................................. 21 1 1 23.00 23 23 0 0 0 0 0
..................................................AGATATGTCTGATATTCTTGGTTG........................................................................................... 24 1 1 23.00 23 23 0 0 0 0 0
..................................................AGCTATGTTTGATATTCTTGGTC............................................................................................ 23 2 1 23.00 23 23 0 0 0 0 0
..................................................AGATATGATTGATATTCTTGGTTG........................................................................................... 24 1 1 22.00 22 19 3 0 0 0 0
....................................................ATATGTTTGATATTCTTGGTT............................................................................................ 21 0 1 22.00 22 12 10 0 0 0 0
...................................................GATATGTTTGATATTCTTGGTTGA.......................................................................................... 24 1 1 22.00 22 0 22 0 0 0 0
...........................................................................................CGCAGGAATCAAACATATTATT.................................................... 22 1 1 21.00 21 21 0 0 0 0 0
...........................................................................................CCAAGGAATCAAACATATTATT.................................................... 22 1 1 21.00 21 21 0 0 0 0 0
..................................................TGATATGTTTGATATTCTTGGT............................................................................................. 22 1 1 20.00 20 20 0 0 0 0 0
.................................................AAGATATGTTTGATATTCTTGG.............................................................................................. 22 1 1 20.00 20 0 20 0 0 0 0
..................................................ATATATGTTTGATATTCTTGGTTC........................................................................................... 24 2 1 20.00 20 20 0 0 0 0 0
...........................................................................................CCCAGGAATCAAACATATTA...................................................... 20 0 1 19.00 19 8 2 3 3 3 0
............................................................................................CCAGGAATCAAACATATTATT.................................................... 21 0 1 19.00 19 12 4 2 1 0 0
..................................................ATATATGTTTGATATTCTTGGTTT........................................................................................... 24 2 1 18.00 18 18 0 0 0 0 0
...................................................GATATGTTTGATATTCTTGGTTGT.......................................................................................... 24 0 1 18.00 18 0 18 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGCT............................................................................................ 23 1 1 18.00 18 15 3 0 0 0 0
..................................................AGGTATGTTTGATATTCTTGGTTG........................................................................................... 24 1 1 18.00 18 11 7 0 0 0 0
...........................................................................................CCCAGGAATCAAACATATTATTC................................................... 23 1 1 18.00 18 13 4 0 1 0 0
...................................................GATATGTTTGATATTCTTGGTC............................................................................................ 22 1 1 17.00 17 3 14 0 0 0 0
..................................................AGATATGTTTGATATTCTTGTTT............................................................................................ 23 1 1 17.00 17 16 1 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTGG........................................................................................... 24 1 1 17.00 17 17 0 0 0 0 0
..................................................AGATTTGTTTGATATTCTTGG.............................................................................................. 21 1 1 17.00 17 17 0 0 0 0 0
..................................................AGATATGTTTTATATTCTTGGTTG........................................................................................... 24 1 1 17.00 17 7 10 0 0 0 0
..................................................AGATATGTTTGATATTCTTTGTTG........................................................................................... 24 1 1 16.00 16 8 3 3 0 0 2
..................................................ATATATTTTTGATATTCTTGGTT............................................................................................ 23 2 1 16.00 16 16 0 0 0 0 0
..................................................AGATATGTTCGATATTCTTGGTTG........................................................................................... 24 1 1 16.00 16 11 5 0 0 0 0
..................................................AGATATTTTTGATATTCTTGG.............................................................................................. 21 1 1 16.00 16 13 3 0 0 0 0
.................................................AAGATATGTTTGATATTCTTGGTTG........................................................................................... 25 1 1 15.00 15 0 14 0 1 0 0
..................................................AGATATGTTTAATATTCTTGGTTG........................................................................................... 24 1 1 15.00 15 11 4 0 0 0 0
..................................................AAATATGTTTGATATTCTTGGT............................................................................................. 22 1 1 15.00 15 15 0 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTCG........................................................................................... 24 1 1 15.00 15 10 5 0 0 0 0
..................................................TGCTATGTTTGATATTCTTGGTTG........................................................................................... 24 2 1 15.00 15 14 0 0 0 0 1
..................................................AGATATGATTGATATTCTTGGTT............................................................................................ 23 1 1 14.00 14 14 0 0 0 0 0
..................................................AGATATGTTTGATTTTCTTGGTTG........................................................................................... 24 1 1 14.00 14 12 2 0 0 0 0
...........................................................................................CCCAGGAATCCAACATATTATTA................................................... 23 1 1 14.00 14 6 0 7 0 0 1
..................................................AGACATGTTTGATATTCTTGGT............................................................................................. 22 1 1 13.00 13 12 1 0 0 0 0
..................................................AGATATGTTTGATATTCTTTG.............................................................................................. 21 1 1 13.00 13 3 2 0 2 0 6
..................................................AGATATGTTTGATATTCTTGGTTAAA......................................................................................... 26 3 1 13.00 13 2 11 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTTAA.......................................................................................... 25 2 1 13.00 13 2 11 0 0 0 0
..................................................AGATATGTTTGATATTCCTGGTTG........................................................................................... 24 1 1 13.00 13 11 2 0 0 0 0
......................................................ATGTTTGATATTCTTGGT............................................................................................. 18 0 1 13.00 13 5 8 0 0 0 0
..................................................AGATACGTTTGATATTCTTGGTTG........................................................................................... 24 1 1 13.00 13 11 2 0 0 0 0
..................................................AGATATGTTTGATATTCTTCGTTG........................................................................................... 24 1 1 13.00 13 11 2 0 0 0 0
..................................................ACATATGTTTGATATTCTTGGT............................................................................................. 22 1 1 12.00 12 12 0 0 0 0 0
..................................................AGATATGCTTGATATTCTTGG.............................................................................................. 21 1 1 12.00 12 10 1 1 0 0 0
..................................................AGATATGTTTGATATGCTTGGTTG........................................................................................... 24 1 1 12.00 12 5 7 0 0 0 0
..................................................TGATATGTTTGATATTCTTGGC............................................................................................. 22 2 1 11.00 11 11 0 0 0 0 0
..................................................AGATATATTTGATATTCTTGGTTG........................................................................................... 24 1 1 11.00 11 6 4 1 0 0 0
..................................................ATATATGTTTGATATTCTTGGTTGA.......................................................................................... 25 2 1 11.00 11 11 0 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTCT........................................................................................... 24 2 1 11.00 11 1 10 0 0 0 0
.....................................................TATGTTTGATATTCTTGG.............................................................................................. 18 0 1 11.00 11 5 6 0 0 0 0
....................................................AGATTTTTGATATTCTTGGTTG........................................................................................... 22 2 1 11.00 11 11 0 0 0 0 0
...........................................................................................CCCAGGAATCAAACATATT....................................................... 19 0 1 11.00 11 3 1 2 4 1 0
....................................................ATATGTTTGATATTCTTGGT............................................................................................. 20 0 1 11.00 11 2 9 0 0 0 0
..................................................AGATAGGTTTGATATTCTTGG.............................................................................................. 21 1 1 11.00 11 10 1 0 0 0 0
.............................................................................................CAGGAATCAAACATATTATT.................................................... 20 0 1 11.00 11 9 2 0 0 0 0
..................................................AGATATGTTTGATATTTTTGGTTG........................................................................................... 24 1 1 11.00 11 6 5 0 0 0 0
..................................................ATATATGTTTGATATTCTTGGTA............................................................................................ 23 2 2 11.00 22 22 0 0 0 0 0
..................................................AGATATGTTTGTTATTCTTGGTTG........................................................................................... 24 1 1 11.00 11 0 10 0 1 0 0
..................................................AGATAGGTTTGATATTCTTGGTT............................................................................................ 23 1 1 10.00 10 9 1 0 0 0 0
..................................................TGATATGTTTGATATTCTTGGTC............................................................................................ 23 2 1 10.00 10 10 0 0 0 0 0
..................................................ATCTATGTTTGATATTCTTGGT............................................................................................. 22 2 1 10.00 10 10 0 0 0 0 0
..................................................TTATATGTTTGATATTCTTGGTT............................................................................................ 23 2 1 10.00 10 10 0 0 0 0 0
..................................................AGATATGTTTGACATTCTTGGTTG........................................................................................... 24 1 1 10.00 10 6 4 0 0 0 0
..................................................GGATATGTTTGATATTCTTGGTT............................................................................................ 23 1 1 10.00 10 9 1 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTTTT.......................................................................................... 25 1 1 10.00 10 2 6 0 0 0 2
..................................................AGATATGTCTGATATTCTTGGTT............................................................................................ 23 1 1 10.00 10 9 1 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGAA............................................................................................ 23 2 1 10.00 10 0 10 0 0 0 0
..................................................AGAAATGTTTGATATTCTTGGT............................................................................................. 22 1 1 10.00 10 10 0 0 0 0 0
..................................................ATATATGATTGATATTCTTGGTTG........................................................................................... 24 2 1 10.00 10 10 0 0 0 0 0
..................................................AGATATGTTTGGTATTCTTGGT............................................................................................. 22 1 1 10.00 10 0 10 0 0 0 0
..................................................AGATATTTTTGATATTCTTGGT............................................................................................. 22 1 1 9.00 9 8 1 0 0 0 0
..................................................AGATATGTTTGATATTCTTAGTTG........................................................................................... 24 1 1 9.00 9 6 2 1 0 0 0
..................................................AGATGTGTTTGATATTCTTGGTTG........................................................................................... 24 1 1 9.00 9 4 5 0 0 0 0
...................................................GATATGTTTGATATTCTTGGTTT........................................................................................... 23 1 1 9.00 9 0 9 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGATG........................................................................................... 24 1 1 9.00 9 8 1 0 0 0 0
..................................................ATAGATGTTTGATATTCTTGGT............................................................................................. 22 2 1 9.00 9 9 0 0 0 0 0
..................................................AGATATGATTGATATTCTTGG.............................................................................................. 21 1 1 9.00 9 8 1 0 0 0 0
..................................................AGATATGTTTGATATTCGTGGTTG........................................................................................... 24 1 1 9.00 9 7 2 0 0 0 0
..................................................ATATATGTTTGATATTCTTGTTTG........................................................................................... 24 2 1 9.00 9 9 0 0 0 0 0
..................................................AGCTATGTTTGATATTCTTGGTTGT.......................................................................................... 25 1 1 9.00 9 9 0 0 0 0 0
..................................................AGATATGGTTGATATTCTTGGTTG........................................................................................... 24 1 1 9.00 9 5 4 0 0 0 0
..................................................ATATATGCTTGATATTCTTGGTTG........................................................................................... 24 2 1 9.00 9 9 0 0 0 0 0
....................................................AGATGTTTGATATTCTTGGTT............................................................................................ 21 1 1 9.00 9 8 1 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTAAA.......................................................................................... 25 3 2 8.50 17 2 15 0 0 0 0
..................................................ATATTTGTTTGATATTCTTGGTTG........................................................................................... 24 2 1 8.00 8 8 0 0 0 0 0
..................................................AGATATGTTTGATATTCTTT............................................................................................... 20 1 1 8.00 8 1 3 0 0 0 4
..................................................AGATATGTTTGAAATTCTTGGTTG........................................................................................... 24 1 1 8.00 8 6 2 0 0 0 0
..................................................AGATATCTTTGATATTCTTGGTTG........................................................................................... 24 1 1 8.00 8 4 4 0 0 0 0
...........................................................................................CCCTGGAATCAAACATATTATTA................................................... 23 1 1 8.00 8 8 0 0 0 0 0
...........................................................................................CCCAGGAATCAAACATATTATTAT.................................................. 24 1 1 8.00 8 8 0 0 0 0 0
.....................................................TATGTTTGATATTCTTGGTT............................................................................................ 20 0 1 8.00 8 5 3 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTTGAA......................................................................................... 26 2 1 8.00 8 1 7 0 0 0 0
..................................................AGATATGTTTGATATTCTTGA.............................................................................................. 21 1 1 8.00 8 3 4 0 1 0 0
...................................................GATATGTTTGATATTCTTGGTTC........................................................................................... 23 1 1 8.00 8 1 7 0 0 0 0
...................................................GATATGTTTGATATTCTT................................................................................................ 18 0 1 8.00 8 0 8 0 0 0 0
..................................................AGACATGTTTGATATTCTTGGTC............................................................................................ 23 2 1 8.00 8 8 0 0 0 0 0
.................................................CAGATATGTTTGATATTCTTGGT............................................................................................. 23 1 1 8.00 8 5 3 0 0 0 0
..................................................GGATATGTTTGATATTCTTGG.............................................................................................. 21 1 1 7.00 7 3 4 0 0 0 0
...........................................................................................CTCAGGAATCAAACATATTATTA................................................... 23 1 1 7.00 7 7 0 0 0 0 0
...........................................................................................CCCAGGACTCAAACATATTATTA................................................... 23 1 1 7.00 7 7 0 0 0 0 0
..................................................AGATATGTTTGATATACTTGGTTG........................................................................................... 24 1 1 7.00 7 5 2 0 0 0 0
..................................................AGGTATGTTTGATATTCTTGGTT............................................................................................ 23 1 1 7.00 7 6 0 0 1 0 0
.................................................CGGATATGTTTGATATTCTTGG.............................................................................................. 22 2 1 7.00 7 7 0 0 0 0 0
..................................................TTATATGTTTGATATTCTTGG.............................................................................................. 21 2 2 7.00 14 14 0 0 0 0 0
..................................................AGATATGTTTGATATTCTTCTTTG........................................................................................... 24 2 1 7.00 7 6 1 0 0 0 0
..................................................AGATATGTTTGCTATTCTTGGTT............................................................................................ 23 1 1 7.00 7 4 3 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTTGTC......................................................................................... 26 1 1 7.00 7 3 1 1 1 1 0
.................................................GAGATATGTTTGATATTCTTGGTTG........................................................................................... 25 0 1 7.00 7 0 7 0 0 0 0
...........................................................................................CCCAGGAATCAAACATATTATTT................................................... 23 1 1 7.00 7 7 0 0 0 0 0
.................................................TAGATATGTTTGATATTCTTGGTTG........................................................................................... 25 1 1 7.00 7 0 7 0 0 0 0
................................................TCAGATATGTTTGATATTCTTGG.............................................................................................. 23 1 1 7.00 7 7 0 0 0 0 0
...........................................................................................CCTAGGAATCAAACATATTATT.................................................... 22 1 1 7.00 7 6 0 0 0 0 1
..................................................AGATATGTTTGATATTCTCGGTTG........................................................................................... 24 1 1 7.00 7 5 2 0 0 0 0
..................................................AGAGATGTTTGATATTCTTGGTC............................................................................................ 23 2 1 7.00 7 7 0 0 0 0 0
....................................................AGATGTTTGATATTCTTGGTTG........................................................................................... 22 1 1 7.00 7 5 2 0 0 0 0
...........................................................................................CCCTGGAATCAAACATATTATT.................................................... 22 1 1 7.00 7 7 0 0 0 0 0
..................................................ATATATGTTTGATATTCTTGGCTG........................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTTGAT......................................................................................... 26 1 1 6.00 6 2 4 0 0 0 0
..................................................GTATATGTTTGATATTCTTGGTTG........................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0
..................................................AGATATGTTTGATATTGTTGGTTG........................................................................................... 24 1 1 6.00 6 6 0 0 0 0 0
..................................................AGATATGTTTGATATTCATGGTTG........................................................................................... 24 1 1 6.00 6 5 1 0 0 0 0
..................................................AGGTATGTTTGATATTCTTGG.............................................................................................. 21 1 1 6.00 6 2 4 0 0 0 0
..................................................AGATATGTTTGATACTCTTGGTTG........................................................................................... 24 1 1 6.00 6 4 2 0 0 0 0
..................................................ATGTATGTTTGATATTCTTGGTTG........................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTTGTT......................................................................................... 26 0 1 6.00 6 3 3 0 0 0 0
..................................................AGATATTTTTGATATTCTTGTTTG........................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0
.................................................GAGATATGTTTGATATTCTTGG.............................................................................................. 22 0 1 6.00 6 0 6 0 0 0 0
..................................................AGATATGTTTGATTTTCTTGGTT............................................................................................ 23 1 1 6.00 6 6 0 0 0 0 0
..................................................AGATATGGTTGATATTCTTGGTT............................................................................................ 23 1 1 6.00 6 6 0 0 0 0 0
...........................................................................................CCCAGTAATCAAACATATTATTA................................................... 23 1 1 6.00 6 5 0 1 0 0 0
..................................................ATATATGTTTGATATTCTTGGATG........................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0
..................................................AGATATGTTCGATATTCTTGGTT............................................................................................ 23 1 1 6.00 6 6 0 0 0 0 0
..................................................AGATATGTTTCATATTCTTGGTTG........................................................................................... 24 1 1 6.00 6 1 5 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTG............................................................................................ 23 1 1 5.00 5 4 1 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGGTG........................................................................................... 24 1 1 5.00 5 1 1 3 0 0 0
..................................................ATATATGATTGATATTCTTGGTT............................................................................................ 23 2 1 5.00 5 5 0 0 0 0 0
..................................................AGATATGTTTGATATTCC................................................................................................. 18 1 1 5.00 5 5 0 0 0 0 0
..................................................AGATATGTTTGATATACTTGGTT............................................................................................ 23 1 1 5.00 5 3 2 0 0 0 0
..................................................AGATATGTTTGATATTCTTGCTTG........................................................................................... 24 1 1 5.00 5 2 3 0 0 0 0
..................................................AGATATGTTCGATATTCTTGG.............................................................................................. 21 1 1 5.00 5 5 0 0 0 0 0
..................................................ATATATGTTTGATATTCTTGGTTAA.......................................................................................... 25 3 1 5.00 5 5 0 0 0 0 0
..................................................ATATATGTTTGATATTCTTGGTGG........................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
..................................................ATATATGTTTGATATCCTTGGTTG........................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
.................................................CAGATATGTTTGATATTCTTG............................................................................................... 21 1 1 5.00 5 0 5 0 0 0 0
..................................................ATATATGTTTGATATGCTTGGTTG........................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
..................................................AGATATGTTTGATATTCTTGAC............................................................................................. 22 2 1 5.00 5 5 0 0 0 0 0
..................................................AGATATGTTTGATATTCTTGATTG........................................................................................... 24 1 1 5.00 5 3 2 0 0 0 0
....................................................AGATGTTTGATATTCTTGG.............................................................................................. 19 1 1 5.00 5 5 0 0 0 0 0
.................................................CAGATATGTTTGATATTCTTGGTC............................................................................................ 24 2 1 5.00 5 5 0 0 0 0 0
...........................................................................................CCAAGGAATCAAACATATTATTAA.................................................. 24 2 1 5.00 5 4 0 0 1 0 0
..................................................AGATAGGTTTGATATTCTTGGTC............................................................................................ 23 2 1 5.00 5 5 0 0 0 0 0
..................................................AGATATGTTTGATATTATTGGTTG........................................................................................... 24 1 1 5.00 5 3 1 1 0 0 0
..................................................ATATATGTTTGATATTCTTGGTTA........................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
..................................................AGCTATGTTTGATATTCTTGGC............................................................................................. 22 2 1 5.00 5 5 0 0 0 0 0
.................................................CAGATATGTTTGATATTCTTGGC............................................................................................. 23 2 1 5.00 5 5 0 0 0 0 0
......................................................ATGTTTGATATTCTTGGTC............................................................................................ 19 1 1 5.00 5 5 0 0 0 0 0
..................................................AGATATGTTTGATATCCTTGG.............................................................................................. 21 1 1 5.00 5 4 1 0 0 0 0
..................................................AGATAGGTTTGATATTCTTGGT............................................................................................. 22 1 1 5.00 5 5 0 0 0 0 0
....................................................ATATGTTTGATATTCTTG............................................................................................... 18 0 1 5.00 5 0 5 0 0 0 0
..................................................ATACATGTTTGATATTCTTGGT............................................................................................. 22 2 1 5.00 5 5 0 0 0 0 0
.............................................................................................CAGGAATCAAACATATTATTA................................................... 21 0 1 5.00 5 4 0 0 1 0 0
..................................................AGATATTTTTGATATTCTTGGTC............................................................................................ 23 2 1 5.00 5 5 0 0 0 0 0
..................................................ATATATGTTTTATATTCTTGGTTG........................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
..................................................AGATATGTTTGATATTTTTGGTT............................................................................................ 23 1 1 5.00 5 4 1 0 0 0 0
.......................................................TGTTTGATATTCTTGGTT............................................................................................ 18 0 1 5.00 5 1 3 0 0 0 1
..................................................ATATATGTTTGATATTCTTAGTTG........................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTTGTA......................................................................................... 26 1 1 5.00 5 4 1 0 0 0 0
..................................................AGATATGCTTGATATTCTTGGT............................................................................................. 22 1 1 5.00 5 4 1 0 0 0 0
..................................................ATATATGTTTGATATTCTTTGTTG........................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
...........................................................................................TCCAGGAATCAAACATATTATTA................................................... 23 1 1 5.00 5 5 0 0 0 0 0
..................................................ATAAATGTTTGATATTCTTGG.............................................................................................. 21 2 3 4.33 13 13 0 0 0 0 0
...................................................GGTATGTTTGATATTCTTGGTTG........................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0
..................................................AGATATGTTTGATATTCTTGTT............................................................................................. 22 1 1 4.00 4 4 0 0 0 0 0
..................................................AGTTATGTTTGATATTCTTGGTTG........................................................................................... 24 1 1 4.00 4 1 3 0 0 0 0
..................................................AGATATGTTTGATGTTCTTGGTTG........................................................................................... 24 1 1 4.00 4 3 1 0 0 0 0
..................................................CGATATGTTTGATATTCTTGGTTG........................................................................................... 24 1 1 4.00 4 2 2 0 0 0 0
..................................................AGATATGTTTGGTATTCTTGGTTGA.......................................................................................... 25 2 1 4.00 4 0 4 0 0 0 0
..................................................AGATATGTTTGATATTCCTGG.............................................................................................. 21 1 1 4.00 4 2 2 0 0 0 0
...........................................................................................CCGAGGAATCAAACATATTATTA................................................... 23 1 1 4.00 4 4 0 0 0 0 0
..................................................AGATATGTTTAATATTCTTGGTT............................................................................................ 23 1 1 4.00 4 4 0 0 0 0 0
..................................................AGATATGTTTGGTATTCTTG............................................................................................... 20 1 2 4.00 8 0 6 0 1 0 1
................................................TCAGATATGTTTGATATTCTTGGTT............................................................................................ 25 1 1 4.00 4 4 0 0 0 0 0
..................................................AGATATGTTTGATATTCTTTGTT............................................................................................ 23 1 1 4.00 4 3 1 0 0 0 0
..................................................AGATATGTTTGATATGCTTGG.............................................................................................. 21 1 1 4.00 4 2 2 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGTTAT.......................................................................................... 25 1 1 4.00 4 1 3 0 0 0 0
..................................................AGATATGTTTGATATTCTTGCT............................................................................................. 22 1 1 4.00 4 4 0 0 0 0 0
...........................................................................................CCCAGGAATCAAACATATTATTAAA................................................. 25 2 1 4.00 4 4 0 0 0 0 0
...............................................ATCAGATATGTTTGATATTCTTGG.............................................................................................. 24 2 1 4.00 4 4 0 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGCC............................................................................................ 23 2 1 4.00 4 1 3 0 0 0 0
..................................................AGATATGTTTGATATTCTGGGTTG........................................................................................... 24 1 1 4.00 4 2 2 0 0 0 0
..................................................ATACATGTTTGATATTCTTGGTC............................................................................................ 23 3 1 4.00 4 4 0 0 0 0 0
..................................................AGATATGTCTGATATTCTTGG.............................................................................................. 21 1 1 4.00 4 4 0 0 0 0 0
..................................................AGATATGTTTGATATTCTTGGG............................................................................................. 22 1 1 4.00 4 3 1 0 0 0 0
..................................................AGATATGTTTGATACTCTTGGT............................................................................................. 22 1 1 4.00 4 2 2 0 0 0 0
..................................................AGATACGTTTGATATTCTTGG.............................................................................................. 21 1 1 4.00 4 2 2 0 0 0 0
..................................................AGATATGTTTGTTATTCTTGG.............................................................................................. 21 1 1 4.00 4 0 4 0 0 0 0

Anti-sense strand reads

GGTTTTAGTTGGTTTGATGGATAGGTGATGGAGTAGATTGCTAAGGTCACTCTATACAAACTATAAGAACCAACAATGTAAGTTTTCAAGTGGGTCCTTAGTTTGTATAATAATGACACTAGCGAATTTGAGATGATTTTTGCTTTGATTTTGCTTTTATGTTTA

************************************....(((((.((((((((((((((((((..((((((.((..((........)).)).)))))))))))))))))).)))))).)))))......***********************************
Read size # Mismatch Hit Count Total Norm Total V110

male body
.......................GGGGATGCAGTAGAATGC............................................................................................................................ 18 3 14 0.07 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6680:4536886-4537050 + dmo_56 confident C-C-AA------------------AA------------TC----------AACCA-------AA-CTACCTATCCACTACCTCAT----------------------------CTAACGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGCTT-AAACTCTACTAAAAACGAAACTAAAACGAAA--ATACAAAT------------------------
droVir3 scaffold_13049:6215330-6215499 + dvi-mir-190 Known_mirbase C-GAA-------------------AGGCTCGTCTTAAACCA---------AATCA-------AA-CTACCC-CCC----ACTCAT----------------------------CTAATGATTCCAGTAAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTG-AAACTCTACTAAACCA---ACCAAAACCAAA--ACCAAAAT------------------------
droGri2 scaffold_15072:36262-36433 + dgr_48 confident C-C-AATAAAATAAAAATCCAACCAA------------TC----------AACCAACCAACCAA-CTAC----CC----ACTCAT----------------------------CTAATGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTG-AAACTCTACTAAAAACA----------------AATCAAAC-----------CAAA---------
droWil2 scf2_1100000004762:5214302-5214463 + dwi_29 confident TTG-A-------------------AT----------------TTACCTCTA------------ACTTGC----CC----TCTCATCTGCCCACAAA-------AACGAACTAATTGATGGTCCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGTCG-G-AATCTACTAAAAACC-------------A--ATTC----------------------------
dp5 XR_group3a:147664-147856 - dps-mir-190 Known_mirbase CGT-A-------------------A-----CTCTTAAC-TAGTTAACCCTA------------ACTCT--------------CATCTGCCCACAAACCAACCCAACGAACTAATTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCG-GAAATCTACTAAACCCC----------CAAACCCCCAAGCT---------CCCAAG-----CCCC
droPer2 scaffold_23:151025-151217 - dpe_52 confident CGT-A-------------------A-----CTCTTAAC-TAGTTAACCCTA------------ACTCT--------------CATCTGCCCACAAACCAACCCAACGAACTAATTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCG-GAAATCTACTAAACCCC----------CAAACCCCCAAGCT---------CCCAAG-----CCCC
droAna3 scaffold_13337:8074852-8075010 - dan_31 confident C-A------------------------------------------AACCTA------------ACTCG--------------CCTCTCCA-----A-------ACACAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACTCTCG-CCAATCTACTAAAAT------------------ACACAGCT-----------TGAGACTACCAAC
droBip1 scf7180000396541:230877-231007 - T-C-T----------------------------------------------------------------------------------CGA-----A-------ACCAAACTAATTGAGGCTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAACT------------------TCACAGCT------------------------
droKik1 scf7180000302474:425996-426123 - T-C-A------------------------------------------------------------------------------------------A-------AACGAACTAATTGATGGCTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGGCCCTCG-CCAATCTACTAAACC------------------TCTCGGCC------------------------
droFic1 scf7180000453833:743449-743591 + CTC-A------------------------------------------------------------------------------------------A-------AACGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAAAC------------------ACTCAGCTACCCGTGATCACAA----------
droEle1 scf7180000491268:124831-124959 - T-C-A------------------------------------------------------------------------------------------A-------AACCAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAAAC---------------A--ACTCAGCT------------------------
droRho1 scf7180000779204:207665-207792 + T-C-A------------------------------------------------------------------------------------------A-------AACAAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAAAC------------------ACTCAGCT------------------------
droBia1 scf7180000302428:10499133-10499253 + TTC-A------------------------------------------------------------------------------------------A-------AACGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAAAC--------------------------------------------------
droTak1 scf7180000414445:150031-150164 - TTC-A------------------------------------------------------------------------------------------A-------AACGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCTAAATCTACTAAAAC------------------AAAAACGC-----------CTGG---------
droEug1 scf7180000409524:96529-96651 - CTC-A------------------------------------------------------------------------------------------A-------AACGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAAAA------------------A------T------------------------
dm3 chr3L:8564893-8565024 + dme-mir-190 Known_mirbase T-C-A------------------------------------------------------------------------------------------A-------AACGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAAAC------------------ACTCAGCT-----------CAAG---------
droSim2 3l:8354632-8354763 + dsi-mir-190 Known_mirbase T-C-A------------------------------------------------------------------------------------------A-------AACGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTATCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAAAC------------------ACTCAGCT-----------CAAG---------
droSec2 scaffold_0:844145-844276 + dse_34 confident T-C-A------------------------------------------------------------------------------------------A-------AATGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAAAC------------------ACTCAGCT-----------CAAG---------
droYak3 3L:3348659-3348779 - dya_23 confident TTC-A------------------------------------------------------------------------------------------A-------AACGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAAAC--------------------------------------------------
droEre2 scaffold_4784:5482467-5482587 - der_36 confident TTC-A------------------------------------------------------------------------------------------A-------ATCGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTAGCCTTCG-CCAATCTACTAAAAC--------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
C-C-AA------------------AA------------TC----------AACCA-------AA-CTACCTATCCACTACCTCAT----------------------------CTAACGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGCTT-AAACTCTACTAAAAACGAAACTAAAACGAAA--ATACAAAT------------------------SizeHit CountTotal NormTotalM046

Female-body
V041

Embryo
V049

Head
V056

Head
M060

Embryo
V110

Male-body
................................................................................................................................AGATATGTTTGATATTCTTGGTTG......................................................................................................................24135476.00354761690413622431835714
................................................................................................................................AGATATGTTTGATATTCTTGGTT.......................................................................................................................23111167.00111673582361675537
................................................................................................................................AGATATGTTTGATATTCTTGG.........................................................................................................................2119598.00959850079193445245
................................................................................................................................AGATATGTTTGATATTCTTGGT........................................................................................................................2213781.0037811874371618783
................................................................................................................................AGATATGTTTGATATTCTTG..........................................................................................................................2012026.002026186712248871
.................................................................................................................................GATATGTTTGATATTCTTGGTTG......................................................................................................................2311265.0012651253001110
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA..............................................................................2311259.00125914234103090863
................................................................................................................................AGATATGTTTGATATTCTTGGTC.......................................................................................................................2311117.0011171380009790
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT...............................................................................221699.006994288223746248
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT.....................................................................................................................251532.0053216331453236
................................................................................................................................AGATATGTTTGATATTCTTGGC........................................................................................................................221471.00471220004490
.................................................................................................................................GATATGTTTGATATTCTTGG.........................................................................................................................201443.00443433000100
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA.....................................................................................................................251352.00352304010470
.................................................................................................................................GATATGTTTGATATTCTTGGTT.......................................................................................................................221260.0026025100090
................................................................................................................................AGATATGTTTGATATTCTTGGTTT......................................................................................................................241236.00236151343750
................................................................................................................................AGATATGTTTGATATTCTTGGTTC......................................................................................................................241215.00215134000810
.................................................................................................................................GATATGTTTGATATTCTTGGT........................................................................................................................211166.0016616300030
................................................................................................................................AGATATGTTTGATATTCTTGGTTGC.....................................................................................................................251140.0014042000980
.................................................................................................................................GATATGTTTGATATTCTTG..........................................................................................................................191139.0013913900000
................................................................................................................................AGATATGTTTGATATTCTTGGTA.......................................................................................................................231111.0011142000690
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT................................................................................211103.00103331744297
................................................................................................................................AGATATGTTTGATATTCTT...........................................................................................................................19183.00837002641
................................................................................................................................AGATATGTTTGATATTCTTGGA........................................................................................................................22177.00777200050
....................................................................................................................................ATGTTTGATATTCTTGGTTG......................................................................................................................20165.006547110160
..................................................................................................................................ATATGTTTGATATTCTTGGTTG......................................................................................................................22165.006548000170
................................................................................................................................AGATATGTTTGATATTCTTGGTAA......................................................................................................................24157.005740000170
................................................................................................................................AGATATGTTTGATATTCTTGC.........................................................................................................................21156.00564001510
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA.............................................................................24148.00481111431
......................................................................................................................................GTTTGATATTCTTGGTTG......................................................................................................................18145.004528120050
..........................................................................................................................................................................CCAGGAATCAAACATATTATTA..............................................................................22135.00352700260
.........................................................................................................................................................................CCCAGGAATCAAACATATTATC...............................................................................22135.00350000350
.....................................................................................................................................TGTTTGATATTCTTGGTTG......................................................................................................................19135.00353230000
................................................................................................................................AGATATGTTTGATATTCTTGGTTA......................................................................................................................24135.003516100180
..................................................................................................................................ATATGTTTGATATTCTTGG.........................................................................................................................19129.00291901090
................................................................................................................................AGATATGTTTGATATTCT............................................................................................................................18127.00275002200
................................................................................................................................AGATATGTTTGATATTCTTGGTTGG.....................................................................................................................25127.00272000070
...................................................................................................................................TATGTTTGATATTCTTGGTTG......................................................................................................................21127.00272020041
................................................................................................................................AGATATGTTTGATATTCTTGT.........................................................................................................................21125.00258024110
....................................................................................................................................ATGTTTGATATTCTTGGTT.......................................................................................................................19123.00231500080
..................................................................................................................................ATATGTTTGATATTCTTGGTT.......................................................................................................................21122.002210000120
.................................................................................................................................GATATGTTTGATATTCTTGGTTGA.....................................................................................................................24122.00222200000
.........................................................................................................................................................................CCCAGGAATCAAACATATTA.................................................................................20119.0019230383
..........................................................................................................................................................................CCAGGAATCAAACATATTATT...............................................................................21119.00194201120
.................................................................................................................................GATATGTTTGATATTCTTGGTTGT.....................................................................................................................24118.00181800000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTC..............................................................................23118.00184001130
.................................................................................................................................GATATGTTTGATATTCTTGGTC.......................................................................................................................22117.00171400030
................................................................................................................................AGATATGTTTGATATTCTTGGTTAAA....................................................................................................................26113.00131100020
................................................................................................................................AGATATGTTTGATATTCTTGGTTAA.....................................................................................................................25113.00131100020
....................................................................................................................................ATGTTTGATATTCTTGGT........................................................................................................................18113.0013800050
................................................................................................................................AGATATGTTTGATATTCTTGGTCT......................................................................................................................24111.00111000010
...................................................................................................................................TATGTTTGATATTCTTGG.........................................................................................................................18111.0011600050
.........................................................................................................................................................................CCCAGGAATCAAACATATT..................................................................................19111.0011120431
..................................................................................................................................ATATGTTTGATATTCTTGGT........................................................................................................................20111.0011900020
...........................................................................................................................................................................CAGGAATCAAACATATTATT...............................................................................20111.0011200090
................................................................................................................................AGATATGTTTGATATTCTTGGAA.......................................................................................................................23110.00101000000
.................................................................................................................................GATATGTTTGATATTCTTGGTTT......................................................................................................................2319.009900000
................................................................................................................................AGATATGTTTGATATTCTTGGTAAA.....................................................................................................................2528.50171500020
................................................................................................................................AGATATGTTTGATATTCTTT..........................................................................................................................2018.008304010
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAT.............................................................................2418.008000080
...................................................................................................................................TATGTTTGATATTCTTGGTT.......................................................................................................................2018.008300050
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAA....................................................................................................................2618.008700010
................................................................................................................................AGATATGTTTGATATTCTTGA.........................................................................................................................2118.008400130
.................................................................................................................................GATATGTTTGATATTCTTGGTTC......................................................................................................................2318.008700010
.................................................................................................................................GATATGTTTGATATTCTT...........................................................................................................................1818.008800000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTC....................................................................................................................2617.007110131
...............................................................................................................................GAGATATGTTTGATATTCTTGGTTG......................................................................................................................2517.007700000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTT..............................................................................2317.007000070
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTT....................................................................................................................2616.006300030
...............................................................................................................................GAGATATGTTTGATATTCTTGG.........................................................................................................................2216.006600000
................................................................................................................................AGATATGTTTGATATTCTTGGTG.......................................................................................................................2315.005100040
................................................................................................................................AGATATGTTTGATATTCC............................................................................................................................1815.005000050
................................................................................................................................AGATATGTTTGATATTCTTGAC........................................................................................................................2215.005000050
....................................................................................................................................ATGTTTGATATTCTTGGTC.......................................................................................................................1915.005000050
..................................................................................................................................ATATGTTTGATATTCTTG..........................................................................................................................1815.005500000
...........................................................................................................................................................................CAGGAATCAAACATATTATTA..............................................................................2115.005000140
.....................................................................................................................................TGTTTGATATTCTTGGTT.......................................................................................................................1815.005301010
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTA....................................................................................................................2615.005100040
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAAA............................................................................2514.004000040
................................................................................................................................AGATATGTTTGATATTCTTGGCC.......................................................................................................................2314.004300010
................................................................................................................................AGATATGTTTGATATTCTTGGG........................................................................................................................2214.004100030
droVir3
C-GAA-------------------AGGCTCGTCTTAAACCA---------AATCA-------AA-CTACCC-CCC----ACTCAT----------------------------CTAATGATTCCAGTAAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTG-AAACTCTACTAAACCA---ACCAAAACCAAA--ACCAAAAT------------------------SizeHit CountTotal NormTotalM027

Male-body
M028

Head
M047

Female-body
M061

Embryo
SRR060654

Ovary
SRR060655

Testis
SRR060656

Ovary
SRR060657

Testis
SRR060658

Ovary
SRR060659

Testis
SRR060660

Ovary
SRR060661

Embryo
SRR060662

Embryo
SRR060663

Embryo
SRR060664

Male-body
SRR060665

Female-body
SRR060666

Male-body
SRR060667

Female-body
SRR060668

Male-body
SRR060669

Female-body
SRR060670

Testis
SRR060671

Male-body
SRR060672

Female-body
SRR060673

Ovary
SRR060674

Ovary
SRR060675

Ovary
SRR060676

Ovary
SRR060677

Ovary
SRR060678

Testis
SRR060679

Testis
SRR060680

Testis
SRR060681

Testis
SRR060682

Embryo
SRR060683

Testis
SRR060684

Embryo
SRR060685

Embryo
SRR060686

Embryo
SRR060687

Embryo
SRR060688

Ovary
SRR060689

Testis
SRR1106712

embryo_0-2h
SRR1106713

embryo_0-2h
SRR1106714

embryo_2-4h
SRR1106715

embryo_4-6h
SRR1106716

embryo_4-6h
SRR1106717

embryo_6-8h
SRR1106718

embryo_6-8h
SRR1106719

embryo_8-10h
SRR1106720

embryo_8-10h
SRR1106721

embryo_10-12h
SRR1106722

embryo_10-12h
SRR1106723

embryo_12-14h
SRR1106724

embryo_12-14h
SRR1106725

embryo_14-16h
SRR1106726

embryo_14-16h
SRR1106727

larvae
SRR1106728

larvae
SRR1106729

mixed whole adult body
SRR1106730

embryo_16-30h
V047

Embryo
V053

Head
V116

Male-body
GSM1528803

follicle cells
SRR2096013

Ovary_Strain_9_oxidized
SRR2096014

Ovary_Strain_160_oxidized
SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers
SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers
SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers
SRR2096055

Ovary_Min_43
SRR2096056

Ovary_Min_46
SRR2096057

Ovary_Min_50
SRR2096058

Ovary_Min_98
SRR2096059

Ovary_Min_164
SRR2096060

Ovary_Min_193
SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers
SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers
SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers
SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers
SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
................................................................................................................................AGATATGTTTGATATTCTTGGTTG......................................................................................................................24157795.005779577111291118134316102317529130018144336175511186179842702346293814544922026041572084108169609761622741811121727386440867424274674319810154717617508997464086124502148302621600531903176866108051034
................................................................................................................................AGATATGTTTGATATTCTTGG.........................................................................................................................21127786.0027786101045286128425219310003835203314749118311078897423526686288521114147000000000000000011018337202706583389302922921611591255014216918151319127118722745
................................................................................................................................AGATATGTTTGATATTCTTGGTT.......................................................................................................................23117808.001780827913037293112125224020211114442018212722363674376193255620714222313201775672112511813106226721856761441441310119273650453042024751034652078574211311390
................................................................................................................................AGATATGTTTGATATTCTTGGTA.......................................................................................................................2313843.00384301423200000010000000000000101100000000000001140000000000000001000910620500444342213142115237235280602701
................................................................................................................................AGATATGTTTGATATTCTTGGT........................................................................................................................2213713.00371341117924320235101180012018144010726301342348375550246414161413131001210000102010020278936343517358485749333953463243404874
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT.....................................................................................................................2512742.002742465715514436472013182251519927913374114466130949813246171632334767232601110110001322302214119934192179442813110310953110721642485070
................................................................................................................................AGATATGTTTGATATTCTTGGTC.......................................................................................................................2312428.00242810111128419000000000010000100002240141561602010000133012102010001101170001371431045455506020696614291294207233
................................................................................................................................AGATATGTTTGATATTCTTG..........................................................................................................................2012199.00219903116625102002000005037204731201232201161442327840031020010000000000000000003013102566427101141021
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT...............................................................................2212110.00211022668134530000031114452164683449276234428341821085111737751636702051365466261832414112313912241604228351430131013977094104
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA..............................................................................2312064.00206403191383200000113513726232352636123234808910373541593743948100147412881915308956117100510213291782602618121311030100251423338
.................................................................................................................................GATATGTTTGATATTCTTGGTTG......................................................................................................................2311007.0010071290900001000000000000000001011411000100000000000000000000000000710101022200002102
................................................................................................................................AGATATGTTTGATATTCTTGGTAA......................................................................................................................241845.00845004560000000010000000000020310011201210000000000010000000000000041151981366710020045375381102
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA.....................................................................................................................251746.00746321133401003010103203020141116311585691901110174000000000000000000000320034346965245345231731263855
.................................................................................................................................GATATGTTTGATATTCTTGG.........................................................................................................................201606.00606005980000000000000000000000200010100000000000000000000000000000000000100000011001
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA.............................................................................241457.004570001000000003012211210118616124949130101025131001210012144313622024010032212216000000828334367
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAAA............................................................................251395.003950010000000001000010000016411901019096104101201110010021100004000030212914000300538307488
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT................................................................................211377.0037703411200000000221461925145272705471171882034121014000000001224122012121214003424010000357918
................................................................................................................................AGATATGTTTGATATTCTTGGTTC......................................................................................................................241361.0036112072510000000000000000000011008141600000001000000000000000000010050312136132381119326281418
................................................................................................................................AGATATGTTTGATATTCTTGGTTAA.....................................................................................................................251343.0034300171100000000000000000000516200003011421000000000000000000000000541371462401020062272023
...............................................................................................................................AAGATATGTTTGATATTCTTGGTTG......................................................................................................................251342.003420113000001000000000000000000000000000000001000000000100000000003240000000000100000
.................................................................................................................................GATATGTTTGATATTCTTGGTT.......................................................................................................................221317.00317003032000000000000000000000012001000000000000000000000000000000020002001000000021
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAA....................................................................................................................261316.003161043000010001000000000001152000040416000000000000000000000010001357658220002101315113431
................................................................................................................................AGATATGTTTGATATTCTTGGTAAA.....................................................................................................................251313.003130013300000000000000000000201100000002110000000000000000000000000274827510201001106122435
................................................................................................................................AGATATGTTTGATATTCTTGGTTAAA....................................................................................................................261300.0030000261000000000000000000002060000020118000000000000000000000000005714544218000000811181516
................................................................................................................................AGATATGTTTGATATTCTTGGTTT......................................................................................................................241288.00288038040000491110001315300150004248040010000000000000000000000003200113697601002044517
................................................................................................................................AGATATGTTTGATATTCTTGGTTA......................................................................................................................241281.00281002410000000000000001000000061000050367100000000000000000000000002717373419200023199111819
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTC....................................................................................................................261281.0028124115501100000000000001010002123148302000000100101000000000000100001100001231178284102313
................................................................................................................................AGATATGTTTGATATTCTTGGA........................................................................................................................221233.00233126450201000000100010013000101012000000000000000000000000000010022232819122120814111318
....................................................................................................................................ATGTTTGATATTCTTGGTTG......................................................................................................................201227.002270347112333120001111000012100701627124110170000000000000000100101776620002002210003
................................................................................................................................AGATATGTTTGATATTCTT...........................................................................................................................191207.0020711148100000000002719717108017812322220200000000000000000000000000008030300003000000000
.................................................................................................................................GATATGTTTGATATTCTTGGT........................................................................................................................211201.00201001912000100000000000000001000100000000000000000000000000000000040000000000010000
.................................................................................................................................GATATGTTTGATATTCTTG..........................................................................................................................191179.00179001790000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TATGTTTGATATTCTTGGTTG......................................................................................................................211153.00153012911200012000100200400432412604401112180000000000000000000010450500211007200001
................................................................................................................................AGATATGTTTGATATTCTTGGTAC......................................................................................................................241146.0014600000000000000000000000000000000000000000000000000000000000000000131412000000613233728
..................................................................................................................................ATATGTTTGATATTCTTGGTTG......................................................................................................................221128.00128214320001000000000000300110102004100010000000000000000000000000590100031100000000
................................................................................................................................AGATATGTTTGATATTCTTGGC........................................................................................................................221128.0012811991000000000000000000000000000000000000000000000000000000000001211200000014563
......................................................................................................................................GTTTGATATTCTTGGTTG......................................................................................................................181112.00112312702100308000010000100002322224010110010000000000000000000000400001010001010000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTCC...................................................................................................................27187.008738551000000000000000000000000536701000000000000000010000000100000000026105000000
................................................................................................................................AGATATGTTTGATATTCTTGT.........................................................................................................................21174.007400340000000000643650010410100180900010000000000000000000000015100001000000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGC.....................................................................................................................25171.007125026000000000000000000000000000100001000000000000000000000000000036010111202658
................................................................................................................................AGATATGTTTGATATTCTTGGAA.......................................................................................................................23270.50141111610000000000100000000001500000000010000000000000000000000000031312514000000766813
................................................................................................................................AGATATGTTTGATATTCT............................................................................................................................18166.00660364000000000031010000302100000000000000000000000000000000101031033143397001101
.....................................................................................................................................TGTTTGATATTCTTGGTTG......................................................................................................................19164.006400190111010300000000010009110160210001011000000000000000000010090000001101000000
................................................................................................................................AGATATGTTTGATATTCTTGGTCT......................................................................................................................24159.005962410000000000000000000000001114000000002000000000000000000000000000511086700000
................................................................................................................................AGATATGTTTGATATTCTTGGTTAAC....................................................................................................................26158.0058000100000000000000000000000000000000000000000000000000000000000009570000001491012
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAAAA...........................................................................26157.005700000000000000000000000000110000302000000000000010000000000000000326000000197714
..........................................................................................................................................................................CCAGGAATCAAACATATTATT...............................................................................21144.00440051000000000020220101000022250300000010000000000002100000500000002000000001121
....................................................................................................................................ATGTTTGATATTCTTGGTT.......................................................................................................................19144.004401203010010000010120000000010100010100000000000000000000000000070010100000000010
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTT....................................................................................................................26143.00430036000000000000000000100014234310000100000000000000000000000000001241101101011
................................................................................................................................AGATATGTTTGATATTCTTGGTTAC.....................................................................................................................25140.00400000000000000000000000000000000000000000000000000000000000000000078100000027195
...................................................................................................................................TATGTTTGATATTCTTGG.........................................................................................................................18139.003900211000000000000000000000001021200000000000000000000000000000004000200000011102
................................................................................................................................AGATATGTTTGATATTCTTGGTTGG.....................................................................................................................25136.003652132000000000000000000000000010110110000000000000000000000010000001010101100102
...............................................................................................................................AAGATATGTTTGATATTCTTGGTT.......................................................................................................................24136.003600800000000000000000000000000000000000000000000000000000000000270001000000000000
..................................................................................................................................ATATGTTTGATATTCTTGG.........................................................................................................................19135.003500261000000000000000000000000010000000000000000000000000000000000021200000010001
.........................................................................................................................................................................CCCAGGAATCAAACATATTA.................................................................................20135.00351000000000000031042004100002101100000001000000100000110000303000100100000010100
..........................................................................................................................................................................CCAGGAATCAAACATATTATTA..............................................................................22135.00350000001000000000100110001123202210001010000000000100101001700000000000001101001
....................................................................................................................................ATGTTTGATATTCTTGGT........................................................................................................................18134.003400210000100000000000000002012000000000000000000000000000000000060000000000010000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTA....................................................................................................................26133.00330011000000010000000000001000001000002000000000000000000000000001052201001021236
.........................................................................................................................................................................CCCAGGAATCAAACATATT..................................................................................19128.00280030000000000031003205000000100000000000000000000001000000216000000000000000000
..................................................................................................................................ATATGTTTGATATTCTTGGTT.......................................................................................................................21128.002800222000000000000000000000000001000000000000000000000000000000010000200000000000
...............................................................................................................................AAGATATGTTTGATATTCTTGG.........................................................................................................................22127.002700220000020000000000000000000000000000000000000000000000000000000210000000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTCC......................................................................................................................24126.00260081000000000000000000000000200100000000000000000000000001000020000010201003211
...................................................................................................................................TATGTTTGATATTCTTGGTT.......................................................................................................................20126.002600110100000000000100000100100010000000001000000000000000000000040011100000010010
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAT.............................................................................24126.00260000000000000000000000201323011310101100001000000001010000001000010100000000000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTC..............................................................................23126.00260040000000000000000000000101111100000000010000000010120211600000000001000000000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTT..............................................................................23125.00250020000000000003002100100020011300000000000000000000000001100100000000000002112
................................................................................................................................AGATATGTTTGATATTCTTGA.........................................................................................................................21125.002500110000000000000301001300000012000000000000000000000000000000001000200000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTCT...................................................................................................................27121.00218102000000000000000000000000111500000000100000000000000000000000000001000000000
................................................................................................................................AGATATGTTTGATATTCTTGC.........................................................................................................................21121.002100013000000000000000000000000100000000000000000000000000000000001042000000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTG.......................................................................................................................23120.00200135000000000000000000000000000000000000000000000000000000010000000000100002322
.................................................................................................................................GATATGTTTGATATTCTTGGTTGT.....................................................................................................................24119.001901130000000000000000000000001200000000000000000000000000000001010000000000000000
................................................................................................................................AGATATGTTTGATATTCTTGGAC.......................................................................................................................23119.00191303000000000000000000000000000000000000000000000010000001000000012010100000221
...............................................................................................................................AAGATATGTTTGATATTCTTGGT........................................................................................................................23118.00180060000000200000000000000000000000000000000000000000000000010090000000000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTAAC.....................................................................................................................25316.6750000000000000000000000000000000000000000000000000000000000000000008340000000510911
....................................................................................................................................ATGTTTGATATTCTTGGTTGT.....................................................................................................................21116.001600200100000000000000000000000000001000100000000000000000000000100100000000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAAC...................................................................................................................27116.00160002000000000000000000000000000000000000000000000000000000000000022100000002151
................................................................................................................................AGATATGTTTGATATTCTTGGTAT......................................................................................................................24116.00160012000000000000000000000000000000000000000000000000000000000000213100000021120
...................................................................................................................................TATGTTTGATATTCTTGGT........................................................................................................................19116.00160090000000000000000000000000010000100000000000000000000000000100200000000110000
................................................................................................................................AGATATGTTTGATATTCTTC..........................................................................................................................20115.00150010000000000000000000001010631200000000000000000000000000000000000000000000000
.................................................................................................................................GATATGTTTGATATTCTTGGTC.......................................................................................................................22114.001400130000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................TGTTTGATATTCTTGGTT.......................................................................................................................18113.00130051000000000000000000000100000000000001000000000000000000000040000010000000000
..................................................................................................................................ATATGTTTGATATTCTTGGT........................................................................................................................20113.001300120000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................TATGTTTGATATTCTTGGTTGT.....................................................................................................................22111.00110000011000000000000000010001000000000000000000000000000000000050000000000000002
.......................................................................................................................................TTTGATATTCTTGGTTG......................................................................................................................17111.00110000000000000000000000000000000000000000000000000000000000000090001000000000010
................................................................................................................................AGATATGTTTGATATTCTTT..........................................................................................................................20111.00110030000000000010001100000010110000000000000000000000000000011000000000000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTCA......................................................................................................................24110.00100012000000000000000000000000100000000000000000000000000000000000012000000011001
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAAT...................................................................................................................27110.00100021000000000000000000000100000000000000000000000000000000000000022000000001001
..................................................................................................................................ATATGTTTGATATTCTTG..........................................................................................................................18110.00100090000000000000000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTACA.....................................................................................................................25110.00100000000000000000000000000000000000000000000000000000000000000000022000000000222
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAC....................................................................................................................2619.0092001000000000000000000000000000000000000000000000000000000000000000002010100011
................................................................................................................................AGATATGTTTGATATTCTTGGCA.......................................................................................................................2319.0090001000000000000000000000000000000000000000000000000000000000000023200000000010
..................................................................................................................................ATATGTTTGATATTCTTGGTC.......................................................................................................................2118.0081052000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................GATATGTTTGATATTCTTGGTTGA.....................................................................................................................2418.0080080000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................AGATATGTTTGATATTCTTGGCC.......................................................................................................................2318.0081022000000000000000000000000000000000000000000000000000000000000000011000000100
................................................................................................................................AGATATGTTTGATATTCTTGGTTCA.....................................................................................................................2518.0080042000000000000000000000000000000000000000000000000000000000000001000000000100
................................................................................................................................AGATATGTTTGATATTCTTGGG........................................................................................................................2218.0080311000000000000000000000000000000000000000000000000000000000000001010000001000
.................................................................................................................................GATATGTTTGATATTCTTGGTAA......................................................................................................................2317.0070070000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................GTTTGATATTCTTGGTTGT.....................................................................................................................1917.0070001000000000000000000000000000000001000000000000000000000000050000000000000000
.................................................................................................................................GATATGTTTGATATTCTTGGTTT......................................................................................................................2317.0070070000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTTAA....................................................................................................................2626.50130021000000000000000000000000000000000000000000000000000000000001123100000000101
droGri2
C-C-AATAAAATAAAAATCCAACCAA------------TC----------AACCAACCAACCAA-CTAC----CC----ACTCAT----------------------------CTAATGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTG-AAACTCTACTAAAAACA----------------AATCAAAC-----------CAAA---------SizeHit CountTotal NormTotalM041

Female-body
V109

Male-body
................................................................................................................................AGATATGTTTGATATTCTTGGTTG......................................................................................................................241701.007016992
................................................................................................................................AGATATGTTTGATATTCTTGG.........................................................................................................................211483.004834812
................................................................................................................................AGATATGTTTGATATTCTTGGTT.......................................................................................................................231317.003173161
................................................................................................................................AGATATGTTTGATATTCTTGGT........................................................................................................................221169.001691690
................................................................................................................................AGATATGTTTGATATTCTTG..........................................................................................................................20191.0091910
.................................................................................................................................GATATGTTTGATATTCTTGGTTG......................................................................................................................23158.0058580
.................................................................................................................................GATATGTTTGATATTCTTGG.........................................................................................................................20150.0050500
.................................................................................................................................GATATGTTTGATATTCTTGGTT.......................................................................................................................22120.0020200
.................................................................................................................................GATATGTTTGATATTCTTGGT........................................................................................................................21117.0017170
................................................................................................................................AGATATGTTTGATATTCTTGGTTT......................................................................................................................24112.0012120
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT.....................................................................................................................2517.00770
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA.....................................................................................................................2517.00770
.................................................................................................................................GATATGTTTGATATTCTTG..........................................................................................................................1916.00660
..................................................................................................................................ATATGTTTGATATTCTTGGTTG......................................................................................................................2215.00550
....................................................................................................................................ATGTTTGATATTCTTGGTT.......................................................................................................................1914.00440
.................................................................................................................................GATATGTTTGATATTCTTGGTTGA.....................................................................................................................2414.00440
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT...............................................................................2213.00321
..................................................................................................................................ATATGTTTGATATTCTTGG.........................................................................................................................1913.00330
................................................................................................................................AGATATGTTTGATATTCTT...........................................................................................................................1913.00330
..........................................................................................................................................................................CCAGGAATCAAACATATTATT...............................................................................2113.00330
................................................................................................................................AGATATGTTTGATATTCTTGGA........................................................................................................................2213.00330
....................................................................................................................................ATGTTTGATATTCTTGGTTG......................................................................................................................2013.00330
................................................................................................................................AGATATGTTTGATATTCTTGGTTGG.....................................................................................................................2513.00330
...................................................................................................................................TATGTTTGATATTCTTGG.........................................................................................................................1812.00220
....................................................................................................................................ATGTTTGATATTCTTGGT........................................................................................................................1811.00110
.................................................................................................................................GATATGTTTGATATTCTTGGTTGG.....................................................................................................................2411.00110
..................................................................................................................................ATATGTTTGATATTCTTGGT........................................................................................................................2011.00110
................................................................................................................................AGATATGTTTGATATTCTTGGTA.......................................................................................................................2311.00110
...................................................................................................................................TATGTTTGATATTCTTGGTTG......................................................................................................................2111.00110
................................................................................................................................AGATATGTTTGATATTCT............................................................................................................................1811.00110
..................................................................................................................................ATATGTTTGATATTCTTGGTT.......................................................................................................................2111.00110
.................................................................................................................................GATATGTTTGATATTCTTGGAA.......................................................................................................................2211.00110
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT................................................................................2111.00110
...................................................................................................................................TATGTTTGATATTCTTGGT........................................................................................................................1911.00110
..................................................................................................................................ATATGTTTGATATTCTTG..........................................................................................................................1811.00110
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA..............................................................................2311.00101
...............................................................................................................................GAGATATGTTTGATATTCTTGGTTG......................................................................................................................2511.00110
droWil2
TTG-A-------------------AT----------------TTACCTCTA------------ACTTGC----CC----TCTCATCTGCCCACAAA-------AACGAACTAATTGATGGTCCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGTCG-G-AATCTACTAAAAACC-------------A--ATTC----------------------------SizeHit CountTotal NormTotalM020

Head
M045

Female-body
V117

Male-body
V118

Embryo
V119

Head
................................................................................................................................AGATATGTTTGATATTCTTGGTTG......................................................................................................................24114444.0014444577182235310135
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA..............................................................................2312946.0029464111617391149
................................................................................................................................AGATATGTTTGATATTCTTGGTT.......................................................................................................................2312929.002929515235214120
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT...............................................................................2212706.0027067420116851916
................................................................................................................................AGATATGTTTGATATTCTTGG.........................................................................................................................2111900.001900267154515235
................................................................................................................................AGATATGTTTGATATTCTTGGT........................................................................................................................2211085.0010855096772239
................................................................................................................................AGATATGTTTGATATTCTTG..........................................................................................................................201768.0076822350301626
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT.....................................................................................................................251733.0073341615757085
.................................................................................................................................GATATGTTTGATATTCTTGGTTG......................................................................................................................231582.005822579010
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT................................................................................211262.00262193228210
.................................................................................................................................GATATGTTTGATATTCTTGGTT.......................................................................................................................221177.001771176000
.........................................................................................................................................................................CCCAGGAATCAAACATATTA.................................................................................201137.001373213794
.................................................................................................................................GATATGTTTGATATTCTTGG.........................................................................................................................201135.001350135000
.........................................................................................................................................................................CCCAGGAATCAAACATATT..................................................................................19191.0091000685
.................................................................................................................................GATATGTTTGATATTCTTGGT........................................................................................................................21180.0080080000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA.....................................................................................................................25169.00698470122
....................................................................................................................................ATGTTTGATATTCTTGGTTG......................................................................................................................20157.00571381125
................................................................................................................................AGATATGTTTGATATTCTTGGTC.......................................................................................................................23156.00564114001
................................................................................................................................AGATATGTTTGATATTCTTGGTTT......................................................................................................................24155.0055449011
.................................................................................................................................GATATGTTTGATATTCTTG..........................................................................................................................19144.0044044000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGG.....................................................................................................................25143.0043346021
..................................................................................................................................ATATGTTTGATATTCTTGGTTG......................................................................................................................22142.0042426174
................................................................................................................................AGATATGTTTGATATTCTTGGTA.......................................................................................................................23141.0041734000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA.............................................................................24140.00401102414
................................................................................................................................AGATATGTTTGATATTCTT...........................................................................................................................19140.00401222006
................................................................................................................................AGATATGTTTGATATTCTTGGTAA......................................................................................................................24136.0036036000
................................................................................................................................AGATATGTTTGATATTCTTGGA........................................................................................................................22133.0033726000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGC.....................................................................................................................25130.0030291000
..........................................................................................................................................................................CCAGGAATCAAACATATTATT...............................................................................21129.0029020819
................................................................................................................................AGATATGTTTGATATTCTTGGTTC......................................................................................................................24129.0029722000
....................................................................................................................................ATGTTTGATATTCTTGGTT.......................................................................................................................19127.0027026001
..........................................................................................................................................................................CCAGGAATCAAACATATTATTA..............................................................................22126.0026010205
...................................................................................................................................TATGTTTGATATTCTTGGTTG......................................................................................................................21126.0026512036
................................................................................................................................AGATATGTTTGATATTCT............................................................................................................................18125.00251411000
......................................................................................................................................GTTTGATATTCTTGGTTG......................................................................................................................18124.0024122010
................................................................................................................................AGATATGTTTGATATTCTTGGTTA......................................................................................................................24121.0021317010
....................................................................................................................................ATGTTTGATATTCTTGGT........................................................................................................................18119.0019019000
.....................................................................................................................................TGTTTGATATTCTTGGTTG......................................................................................................................19119.0019110035
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTT....................................................................................................................26116.0016141010
..................................................................................................................................ATATGTTTGATATTCTTGG.........................................................................................................................19114.0014111011
................................................................................................................................AGATATGTTTGATATTCTTGGTAAA.....................................................................................................................25114.0014014000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAAA............................................................................25110.001001072
.................................................................................................................................GATATGTTTGATATTCTTGGTTGT.....................................................................................................................2419.00909000
................................................................................................................................AGATATGTTTGATATTCTTGGAA.......................................................................................................................2318.00808000
..................................................................................................................................ATATGTTTGATATTCTTGGTT.......................................................................................................................2118.00808000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAA....................................................................................................................2618.00804040
................................................................................................................................AGATATGTTTGATATTCTTGGTTAA.....................................................................................................................2517.00707000
................................................................................................................................AGATATGTTTGATATTCTTGGTG.......................................................................................................................2317.00761000
................................................................................................................................AGATATGTTTGATATTCTTGT.........................................................................................................................2127.001423126
................................................................................................................................AGATATGTTTGATATTCTTGGTTAAA....................................................................................................................2616.00606000
..................................................................................................................................ATATGTTTGATATTCTTGGT........................................................................................................................2016.00603003
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAT.............................................................................2415.00511012
...................................................................................................................................TATGTTTGATATTCTTGG.........................................................................................................................1815.00504001
.........................................................................................................................................................................CCCAGGAATCAAACATATTATA...............................................................................2215.00500023
.................................................................................................................................GATATGTTTGATATTCTTGGA........................................................................................................................2115.00505000
................................................................................................................................AGATATGTTTGATATTCTTGGTCC......................................................................................................................2415.00514000
..................................................................................................................................ATATGTTTGATATTCTTG..........................................................................................................................1815.00505000
................................................................................................................................AGATATGTTTGATATTCTTGGC........................................................................................................................2214.00412001
.................................................................................................................................GATATGTTTGATATTCTTGGTTGA.....................................................................................................................2414.00404000
...................................................................................................................................TATGTTTGATATTCTTGGTT.......................................................................................................................2014.00411011
...............................................................................................................................GAGATATGTTTGATATTCTTGGTT.......................................................................................................................2413.00303000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTT..............................................................................2313.00312000
...........................................................................................................................................................................CAGGAATCAAACATATTATTA..............................................................................2113.00300021
......................................................................................................................................GTTTGATATTCTTGGTTGT.....................................................................................................................1913.00302100
.................................................................................................................................GATATGTTTGATATTCTTGGTAA......................................................................................................................2313.00303000
.................................................................................................................................GATATGTTTGATATTCTTGGTA.......................................................................................................................2213.00303000
................................................................................................................................AGATATGTTTGATATTCTTGGG........................................................................................................................2213.00330000
.................................................................................................................................GATATGTTTGATATTCTTGGTTGG.....................................................................................................................2412.00202000
...................................................................................................................................TATGTTTGATATTCTTGGT........................................................................................................................1912.00201001
...........................................................................................................................................................................CAGGAATCAAACATATTATT...............................................................................2012.00200002
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTG..............................................................................2312.00200020
..................................................................................................................................ATATGTTTGATATTCTTGGTTGT.....................................................................................................................2312.00211000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATC...............................................................................2212.00200002
...............................................................................................................................GAGATATGTTTGATATTCTTGGT........................................................................................................................2312.00202000
..........................................................................................................................................................................CCAGGAATCAAACATATT..................................................................................1812.00200002
.....................................................................................................................................TGTTTGATATTCTTGGTT.......................................................................................................................1812.00202000
................................................................................................................................AGATATGTTTGATATTCTTGC.........................................................................................................................2112.00202000
...............................................................................................................................GAGATATGTTTGATATTCTTGG.........................................................................................................................2212.00202000
...........................................................................................................AACTAATTGATGGTCCCAGTG..............................................................................................................................................2112.00220000
.................................................................................................................................GATATGTTTGATATTCTTGGTTT......................................................................................................................2312.00202000
................................................................................................................................AGATATGTTTGATATTCTTGGTTTG.....................................................................................................................2511.00110000
................................................................................................................................AGATATGTTTGATATTCTTGA.........................................................................................................................2111.00101000
dp5
CGT-A-------------------A-----CTCTTAAC-TAGTTAACCCTA------------ACTCT--------------CATCTGCCCACAAACCAACCCAACGAACTAATTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCG-GAAATCTACTAAACCCC----------CAAACCCCCAAGCT---------CCCAAG-----CCCCSizeHit CountTotal NormTotalM022

Male-body
M040

Female-body
M059

Embryo
M062

Head
V043

Embryo
V051

Head
V112

Male-body
SRR902010

Ovary
SRR902011

Testis
SRR902012

CNS imaginal disc
................................................................................................................................AGATATGTTTGATATTCTTGGTTG......................................................................................................................24122004.00220046517400359162410918104428115
................................................................................................................................AGATATGTTTGATATTCTTGGTT.......................................................................................................................23112911.0012911674052926249355439721
................................................................................................................................AGATATGTTTGATATTCTTGG.........................................................................................................................2117078.00707834313930135782015088308
................................................................................................................................AGATATGTTTGATATTCTTGGT........................................................................................................................2214246.00424613062656463514591120
................................................................................................................................AGATATGTTTGATATTCTTG..........................................................................................................................2012221.00222111861677411261315162
.................................................................................................................................GATATGTTTGATATTCTTGGTTG......................................................................................................................2311308.0013080130042001001
................................................................................................................................AGATATGTTTGATATTCTTGGTC.......................................................................................................................231789.0078903466320000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT.....................................................................................................................251669.006692492824719651024
.................................................................................................................................GATATGTTTGATATTCTTGGTT.......................................................................................................................221531.00531052236000000
.................................................................................................................................GATATGTTTGATATTCTTGG.........................................................................................................................201401.00401039423000020
................................................................................................................................AGATATGTTTGATATTCTTGGC........................................................................................................................221291.002910719688000000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA..............................................................................231280.00280072913205514106
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT...............................................................................221273.002730673238110414008
.................................................................................................................................GATATGTTTGATATTCTTGGT........................................................................................................................211258.00258025611000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTT......................................................................................................................241151.0015101161214700200
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA.....................................................................................................................251144.001440123116300010
.................................................................................................................................GATATGTTTGATATTCTTG..........................................................................................................................191128.00128012800000000
................................................................................................................................AGATATGTTTGATATTCTTGGA........................................................................................................................22195.009508543000030
................................................................................................................................AGATATGTTTGATATTCTTGGTA.......................................................................................................................23186.00860581216000000
..................................................................................................................................ATATGTTTGATATTCTTGGTTG......................................................................................................................22160.006015720000000
................................................................................................................................AGATATGTTTGATATTCTT...........................................................................................................................19156.0056039212100011
................................................................................................................................AGATATGTTTGATATTCTTGGTAA......................................................................................................................24150.005004510000310
................................................................................................................................AGATATGTTTGATATTCTTGGTTGC.....................................................................................................................25149.0049053013100000
................................................................................................................................AGATATGTTTGATATTCTTGGTTC......................................................................................................................24149.004905339010010
......................................................................................................................................GTTTGATATTCTTGGTTG......................................................................................................................18143.004303300910000
.................................................................................................................................GATATGTTTGATATTCTTGGTTGT.....................................................................................................................24140.004003900100000
....................................................................................................................................ATGTTTGATATTCTTGGTTG......................................................................................................................20134.003402921200000
..................................................................................................................................ATATGTTTGATATTCTTGGTT.......................................................................................................................21133.003302823000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTA......................................................................................................................24132.003202271000020
................................................................................................................................AGATATGTTTGATATTCTTGT.........................................................................................................................21130.0030012251100000
....................................................................................................................................ATGTTTGATATTCTTGGTT.......................................................................................................................19129.002902711000000
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT................................................................................21129.00291618355000
..................................................................................................................................ATATGTTTGATATTCTTGG.........................................................................................................................19121.002101902000000
...................................................................................................................................TATGTTTGATATTCTTGGTTG......................................................................................................................21120.002001710101000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTT....................................................................................................................26120.002001621000001
................................................................................................................................AGATATGTTTGATATTCTTGGTTGG.....................................................................................................................25116.001601141000000
................................................................................................................................AGATATGTTTGATATTCTTGA.........................................................................................................................21116.00160223000117
................................................................................................................................AGATATGTTTGATATTCTTGC.........................................................................................................................21116.00160079000000
.....................................................................................................................................TGTTTGATATTCTTGGTTG......................................................................................................................19115.001501300100001
................................................................................................................................AGATATGTTTGATATTCT............................................................................................................................18114.00140374000000
.................................................................................................................................GATATGTTTGATATTCTTGGTTT......................................................................................................................23113.001301300000000
..................................................................................................................................ATATGTTTGATATTCTTG..........................................................................................................................18112.001201200000000
................................................................................................................................AGATATGTTTGATATTCTTGGTG.......................................................................................................................23110.00100154000000
.................................................................................................................................GATATGTTTGATATTCTTGGTA.......................................................................................................................2219.0090900000000
..........................................................................................................................................................................CCAGGAATCAAACATATTATT...............................................................................2119.0090500211000
.........................................................................................................................................................................CCCAGGAATCAAACATATTA.................................................................................2019.0090100431000
.................................................................................................................................GATATGTTTGATATTCTTGGA........................................................................................................................2119.0090900000000
................................................................................................................................AGATATGTTTGATATTCTTGGAA.......................................................................................................................2318.0080800000000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATC...............................................................................2218.0080044000000
.....................................................................................................................................TGTTTGATATTCTTGGTT.......................................................................................................................1818.0080710000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTAAA....................................................................................................................2618.0080800000000
..................................................................................................................................ATATGTTTGATATTCTTGGT........................................................................................................................2018.0080701000000
................................................................................................................................AGATATGTTTGATATTCTTGGTAAA.....................................................................................................................2518.0080600000200
...................................................................................................................................TATGTTTGATATTCTTGG.........................................................................................................................1818.0080311000012
...............................................................................................................................GAGATATGTTTGATATTCTTGGTTG......................................................................................................................2518.0080800000000
...............................................................................................................................GAGATATGTTTGATATTCTTGGTT.......................................................................................................................2418.0080521000000
...................................................................................................................................TATGTTTGATATTCTTGGTT.......................................................................................................................2017.0070500000020
.................................................................................................................................GATATGTTTGATATTCTTGGTTGA.....................................................................................................................2417.0070700000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTAA.....................................................................................................................2517.0070610000000
...............................................................................................................................GAGATATGTTTGATATTCTTGG.........................................................................................................................2217.0070600000010
....................................................................................................................................ATGTTTGATATTCTTGGT........................................................................................................................1816.0060600000000
................................................................................................................................AGATATGTTTGATATTCTTGGAC.......................................................................................................................2316.0060051000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAA....................................................................................................................2616.0060510000000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA.............................................................................2415.0050002100020
................................................................................................................................AGATATGTTTGATATTCTTGGG........................................................................................................................2215.0050410000000
..................................................................................................................................ATATGTTTGATATTCTTGGTTGT.....................................................................................................................2315.0050500000000
...............................................................................................................................GAGATATGTTTGATATTCTTGGT........................................................................................................................2314.0040400000000
..........................................................................................................................................................................CCAGGAATCAAACATATTATTA..............................................................................2214.0040110200000
................................................................................................................................AGATATGTTTGATATTCTTGGCC.......................................................................................................................2314.0040013000000
...................................................................................................................................TATGTTTGATATTCTTGGT........................................................................................................................1914.0040300000001
................................................................................................................................AGATATGTTTGATATTCTTGAC........................................................................................................................2223.5070043000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTC....................................................................................................................2613.0030002000010
.........................................................................................................................................................................CCCAGGAATCAAACATATT..................................................................................1913.0030000120000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTA....................................................................................................................2613.0030001000200
....................................................................................................................................ATGTTTGATATTCTTGGTTGT.....................................................................................................................2113.0030300000000
.................................................................................................................................GATATGTTTGATATTCTTGGTAA......................................................................................................................2313.0030300000000
................................................................................................................................AGATATGTTTGATATTCTTT..........................................................................................................................2023.0060410010000
.................................................................................................................................GATATGTTTGATATTCTTGGTTA......................................................................................................................2313.0030300000000
....................................................................................................................................ATGTTTGATATTCTTGGTC.......................................................................................................................1912.0020020000000
.................................................................................................................................GATATGTTTGATATTCTTGGTC.......................................................................................................................2212.0020101000000
droPer2
CGT-A-------------------A-----CTCTTAAC-TAGTTAACCCTA------------ACTCT--------------CATCTGCCCACAAACCAACCCAACGAACTAATTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCG-GAAATCTACTAAACCCC----------CAAACCCCCAAGCT---------CCCAAG-----CCCCSizeHit CountTotal NormTotalM021

Embryo
M042

Female-body
V042

Embryo
V050

Head
V057

Head
V111

Male-body
................................................................................................................................AGATATGTTTGATATTCTTGGTTG......................................................................................................................2413039.00303997020081320253
................................................................................................................................AGATATGTTTGATATTCTTGGTT.......................................................................................................................231924.0092461823112252
................................................................................................................................AGATATGTTTGATATTCTTGGT........................................................................................................................221460.00460143336152
................................................................................................................................AGATATGTTTGATATTCTTGG.........................................................................................................................211434.0043410391213180
................................................................................................................................AGATATGTTTGATATTCTTG..........................................................................................................................201319.003194242426430
.................................................................................................................................GATATGTTTGATATTCTTGGTTG......................................................................................................................231129.0012961230000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT.....................................................................................................................25197.0097284737102
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT...............................................................................22183.0083682210343
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA..............................................................................23166.006667325115
.................................................................................................................................GATATGTTTGATATTCTTGGTT.......................................................................................................................22162.00620620000
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT................................................................................21133.00331007241
.................................................................................................................................GATATGTTTGATATTCTTGGT........................................................................................................................21133.00330330000
.................................................................................................................................GATATGTTTGATATTCTTGG.........................................................................................................................20131.00310310000
.................................................................................................................................GATATGTTTGATATTCTTG..........................................................................................................................19120.00200200000
................................................................................................................................AGATATGTTTGATATTCTT...........................................................................................................................19118.0018060570
................................................................................................................................AGATATGTTTGATATTCTTGGTTT......................................................................................................................24117.00171150100
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA.....................................................................................................................25116.00160160000
................................................................................................................................AGATATGTTTGATATTCTTGT.........................................................................................................................21115.0015040560
................................................................................................................................AGATATGTTTGATATTCTTGGTA.......................................................................................................................23115.00150140100
....................................................................................................................................ATGTTTGATATTCTTGGTTG......................................................................................................................20115.00152101110
................................................................................................................................AGATATGTTTGATATTCTTGGTAA......................................................................................................................24115.00150150000
................................................................................................................................AGATATGTTTGATATTCTTGGA........................................................................................................................2218.008080000
.........................................................................................................................................................................CCCAGGAATCAAACATATTA.................................................................................2018.008001142
.................................................................................................................................GATATGTTTGATATTCTTGGTTGT.....................................................................................................................2418.008080000
..................................................................................................................................ATATGTTTGATATTCTTGGTTG......................................................................................................................2217.007070000
....................................................................................................................................ATGTTTGATATTCTTGGT........................................................................................................................1816.006050010
....................................................................................................................................ATGTTTGATATTCTTGGTT.......................................................................................................................1915.005040100
................................................................................................................................AGATATGTTTGATATTCT............................................................................................................................1815.005040010
................................................................................................................................AGATATGTTTGATATTCTTGGTTAA.....................................................................................................................2515.005050000
................................................................................................................................AGATATGTTTGATATTCTTGGTTA......................................................................................................................2415.005050000
......................................................................................................................................GTTTGATATTCTTGGTTG......................................................................................................................1814.004211000
...................................................................................................................................TATGTTTGATATTCTTGGT........................................................................................................................1914.004011101
.................................................................................................................................GATATGTTTGATATTCTTGGTTT......................................................................................................................2314.004040000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA.............................................................................2413.003000030
..................................................................................................................................ATATGTTTGATATTCTTGGTT.......................................................................................................................2113.003030000
................................................................................................................................AGATATGTTTGATATTCTTGGTTAAA....................................................................................................................2613.003030000
................................................................................................................................AGATATGTTTGATATTCTTGGTTC......................................................................................................................2412.002020000
...................................................................................................................................TATGTTTGATATTCTTGGTTG......................................................................................................................2112.002110000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGG.....................................................................................................................2512.002020000
.................................................................................................................................GATATGTTTGATATTCTTGGTTGG.....................................................................................................................2412.002020000
.................................................................................................................................GATATGTTTGATATTCTTGGTAA......................................................................................................................2312.002020000
..........................................................................................................................................................................CCAGGAATCAAACATATTATT...............................................................................2112.002020000
................................................................................................................................AGATATGTTTGATATTCTTGGTAAA.....................................................................................................................2512.002020000
...............................................................................................................................GAGATATGTTTGATATTCTTGGTTG......................................................................................................................2512.002020000
.........................................................................................................................................................................CCCAGGAATCAAACATATT..................................................................................1912.002000200
..................................................................................................................................ATATGTTTGATATTCTTGGT........................................................................................................................2012.002020000
..................................................................................................................................ATATGTTTGATATTCTTG..........................................................................................................................1812.002010100
................................................................................................................................AGATATGTTTGATATTCTTT..........................................................................................................................2022.004010030
................................................................................................................................AGATATGTTTGATATTCTTGGG........................................................................................................................2212.002020000
.....................................................................................................................................TGTTTGATATTCTTGGTT.......................................................................................................................1811.001010000
..................................................................................................................................ATATGTTTGATATTCTTGGTTGT.....................................................................................................................2311.001010000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAA....................................................................................................................2611.001010000
.................................................................................................................................GATATGTTTGATATTCTTGGA........................................................................................................................2111.001010000
................................................................................................................................AGATATGTTTGATATTCTTGGTAC......................................................................................................................2411.001100000
...................................................................................................................................TATGTTTGATATTCTTGGTT.......................................................................................................................2011.001010000
................................................................................................................................AGATATGTTTGATATTCTTGGTG.......................................................................................................................2311.001100000
..........................................................................................................................................................................CCAGGAATCAAACATATT..................................................................................1811.001010000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAG....................................................................................................................2611.001000010
................................................................................................................................AGATATGTTTGATATTCTTGGTC.......................................................................................................................2311.001100000
.................................................................................................................................GATATGTTTGATATTCTTGGTAT......................................................................................................................2311.001010000
...................................................................................................................................TATGTTTGATATTCTTGG.........................................................................................................................1811.001010000
................................................................................................................................AGATATGTTTGATATTCTTGGTTAAG....................................................................................................................2611.001010000
.................................................................................................................................GATATGTTTGATATTCTTGGTTAA.....................................................................................................................2411.001010000
......................................................................................................................................GTTTGATATTCTTGGTTGT.....................................................................................................................1911.001000001
................................................................................................................................AGATATGTTTGATATTCTTGGTTGC.....................................................................................................................2511.001100000
.................................................................................................................................GATATGTTTGATATTCTTGGTG.......................................................................................................................2211.001010000
..................................................................................................................................ATATGTTTGATATTCTTGG.........................................................................................................................1911.001010000
......................................................................................................................................GTTTGATATTCTTGGTTGC.....................................................................................................................1911.001100000
................................................................................................................................AGATATGTTTGATATTCTTGA.........................................................................................................................2111.001010000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAT.............................................................................2411.001001000
...........................................................................................................................................................................CAGGAATCAAACATATTAT................................................................................1911.001000010
................................................................................................................................AGATATGTTTGATATTCTTGGAAA......................................................................................................................2430.672020000
................................................................................................................................AGATATGTTTGATATTCTTGAAA.......................................................................................................................2320.501010000
......................................................................................................................................GTTTGATATTCTTGGTTT......................................................................................................................1830.331010000
droAna3
C-A------------------------------------------AACCTA------------ACTCG--------------CCTCTCCA-----A-------ACACAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACTCTCG-CCAATCTACTAAAAT------------------ACACAGCT-----------TGAGACTACCAACSizeHit CountTotal NormTotalM044

Female-body
M058

Embryo
V039

Embryo
V055

Head
V105

Male-body
V106

Head
................................................................................................................................AGATATGTTTGATATTCTTGGTTG......................................................................................................................24113122.0013122117511273914570
................................................................................................................................AGATATGTTTGATATTCTTGGTT.......................................................................................................................2313148.0031481850127504514
................................................................................................................................AGATATGTTTGATATTCTTGG.........................................................................................................................2111516.00151694854418114
................................................................................................................................AGATATGTTTGATATTCTTGGT........................................................................................................................221808.0080851027106417
.................................................................................................................................GATATGTTTGATATTCTTGGTTG......................................................................................................................231779.0077977900000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT.....................................................................................................................251454.0045431462241359
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT...............................................................................221449.00449133716815360
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA..............................................................................231430.004304289412373
................................................................................................................................AGATATGTTTGATATTCTTG..........................................................................................................................201282.0028223324014011
................................................................................................................................AGATATGTTTGATATTCTTGGTC.......................................................................................................................231185.0018551800000
................................................................................................................................AGATATGTTTGATATTCTTGGTTT......................................................................................................................241120.00120101142111
.................................................................................................................................GATATGTTTGATATTCTTGGTT.......................................................................................................................221118.0011811530000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA.....................................................................................................................251109.0010970284007
................................................................................................................................AGATATGTTTGATATTCTTGGTA.......................................................................................................................23191.009111800000
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT................................................................................21190.00900424872
.................................................................................................................................GATATGTTTGATATTCTTGG.........................................................................................................................20186.00868510000
................................................................................................................................AGATATGTTTGATATTCTTGGC........................................................................................................................22180.00802780000
.........................................................................................................................................................................CCCAGGAATCAAACATATTA.................................................................................20153.00530012149
..................................................................................................................................ATATGTTTGATATTCTTGGTTG......................................................................................................................22149.00494700002
................................................................................................................................AGATATGTTTGATATTCTTGGTTA......................................................................................................................24146.004627190000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGC.....................................................................................................................25144.004430140000
....................................................................................................................................ATGTTTGATATTCTTGGTTG......................................................................................................................20143.00434100011
.........................................................................................................................................................................CCCAGGAATCAAACATATT..................................................................................19141.00410100139
.................................................................................................................................GATATGTTTGATATTCTTGGT........................................................................................................................21136.00363420000
................................................................................................................................AGATATGTTTGATATTCTTGGTAA......................................................................................................................24132.00328240000
.................................................................................................................................GATATGTTTGATATTCTTGGTTGT.....................................................................................................................24124.00242400000
................................................................................................................................AGATATGTTTGATATTCTT...........................................................................................................................19123.00236103013
......................................................................................................................................GTTTGATATTCTTGGTTG......................................................................................................................18123.00231702004
...................................................................................................................................TATGTTTGATATTCTTGGTTG......................................................................................................................21121.00211612002
..........................................................................................................................................................................CCAGGAATCAAACATATTATT...............................................................................21119.00190001117
.................................................................................................................................GATATGTTTGATATTCTTG..........................................................................................................................19117.00171700000
................................................................................................................................AGATATGTTTGATATTCT............................................................................................................................18116.0016860101
................................................................................................................................AGATATGTTTGATATTCTTGT.........................................................................................................................21116.0016530503
................................................................................................................................AGATATGTTTGATATTCTTGGA........................................................................................................................22116.00161330000
................................................................................................................................AGATATGTTTGATATTCTTGGTTC......................................................................................................................24115.00151320000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA.............................................................................24115.0015070008
.....................................................................................................................................TGTTTGATATTCTTGGTTG......................................................................................................................19114.00141220000
................................................................................................................................AGATATGTTTGATATTCTTGGTTAA.....................................................................................................................25113.0013490000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAA....................................................................................................................26112.0012181101
................................................................................................................................AGATATGTTTGATATTCTTGGTTGG.....................................................................................................................25111.00111010000
....................................................................................................................................ATGTTTGATATTCTTGGT........................................................................................................................18111.0011610013
....................................................................................................................................ATGTTTGATATTCTTGGTT.......................................................................................................................19110.0010910000
..................................................................................................................................ATATGTTTGATATTCTTGGTT.......................................................................................................................2119.009430002
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAC....................................................................................................................2618.008620000
..........................................................................................................................................................................CCAGGAATCAAACATATTATTA..............................................................................2218.008120014
..................................................................................................................................ATATGTTTGATATTCTTGG.........................................................................................................................1917.007340000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTT....................................................................................................................2616.006300003
................................................................................................................................AGATATGTTTGATATTCTTGC.........................................................................................................................2116.006150000
...............................................................................................................................GAGATATGTTTGATATTCTTGGTTG......................................................................................................................2515.005500000
...................................................................................................................................TATGTTTGATATTCTTGG.........................................................................................................................1815.005230000
.................................................................................................................................GATATGTTTGATATTCTTGGTTT......................................................................................................................2315.005500000
................................................................................................................................AGATATGTTTGATATTCTTGGTG.......................................................................................................................2314.004220000
................................................................................................................................AGATATGTTTGATATTCTTGGTAAA.....................................................................................................................2514.004040000
.................................................................................................................................GATATGTTTGATATTCTTGGTTGC.....................................................................................................................2414.004400000
...................................................................................................................................TATGTTTGATATTCTTGGTT.......................................................................................................................2014.004220000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTA....................................................................................................................2613.003300000
.................................................................................................................................GATATGTTTGATATTCTTGGTTGA.....................................................................................................................2413.003210000
..................................................................................................................................ATATGTTTGATATTCTTGGT........................................................................................................................2013.003200001
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAAA............................................................................2513.003010002
...............................................................................................................................GAGATATGTTTGATATTCTTGG.........................................................................................................................2213.003200010
.........................................................................................................................................................................CCCAGGAATCAAACATATTATC...............................................................................2212.002020000
................................................................................................................................AGATATGTTTGATATTCTTGGTTAAA....................................................................................................................2612.002110000
......................................................................................................................................GTTTGATATTCTTGGTTT......................................................................................................................1812.002200000
.................................................................................................................................GATATGTTTGATATTCTTGGTTGTT....................................................................................................................2512.002200000
.....................................................................................................................................TGTTTGATATTCTTGGTT.......................................................................................................................1812.002110000
.................................................................................................................................GATATGTTTGATATTCTTGGTA.......................................................................................................................2212.002200000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATA...............................................................................2212.002001010
................................................................................................................................AGATATGTTTGATATTCTTGGTTTA.....................................................................................................................2512.002110000
...................................................................................................................................TATGTTTGATATTCTTGGTTGT.....................................................................................................................2212.002000101
...............................................................................................................................GAGATATGTTTGATATTCTTGGTT.......................................................................................................................2412.002110000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAAC...................................................................................................................2712.002020000
..........................................................................................................................................................................CCAGGAATCAAACATATTATTAA.............................................................................2312.002020000
................................................................................................................................AGATATGTTTGATATTCTTGGAA.......................................................................................................................2312.002200000
................................................................................................................................AGATATGTTTGATATTCTTGGTAT......................................................................................................................2412.002200000
................................................................................................................................AGATATGTTTGATATTCTTTT.........................................................................................................................2112.002010100
................................................................................................................................AGATATGTTTGATATTCTTGGTTTC.....................................................................................................................2511.001100000
................................................................................................................................AGATATGTTTGATATTC.............................................................................................................................1711.001000100
................................................................................................................................AGATATGTTTGATATTCTTGGG........................................................................................................................2211.001100000
....................................................................................................................................ATGTTTGATATTCTTGGTA.......................................................................................................................1911.001010000
droBip1
T-C-T----------------------------------------------------------------------------------CGA-----A-------ACCAAACTAATTGAGGCTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAACT------------------TCACAGCT------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
T-C-A------------------------------------------------------------------------------------------A-------AACGAACTAATTGATGGCTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGGCCCTCG-CCAATCTACTAAACC------------------TCTCGGCC------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CTC-A------------------------------------------------------------------------------------------A-------AACGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAAAC------------------ACTCAGCTACCCGTGATCACAA----------SizeHit CountTotal NormTotal
No Reads
droEle1
T-C-A------------------------------------------------------------------------------------------A-------AACCAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAAAC---------------A--ACTCAGCT------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
T-C-A------------------------------------------------------------------------------------------A-------AACAAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAAAC------------------ACTCAGCT------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TTC-A------------------------------------------------------------------------------------------A-------AACGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAAAC--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTC-A------------------------------------------------------------------------------------------A-------AACGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCTAAATCTACTAAAAC------------------AAAAACGC-----------CTGG---------SizeHit CountTotal NormTotal
No Reads
droEug1
CTC-A------------------------------------------------------------------------------------------A-------AACGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAAAA------------------A------T------------------------SizeHit CountTotal NormTotal
No Reads
dm3
T-C-A------------------------------------------------------------------------------------------A-------AACGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAAAC------------------ACTCAGCT-----------CAAG---------SizeHit CountTotal NormTotalGSM154618

Ovary
GSM154620

Ovary
GSM154621

Ovary
GSM154622

Ovary
GSM180328

Head
GSM180329

Mixed-body
GSM180330

Embryo
GSM180331

Embryo
GSM180332

Embryo
GSM180333

Embryo
GSM180334

Larvae
GSM180335

Disc
GSM180336

Pupae
GSM180337

S2
GSM239041

Head
GSM239050

Head
GSM239051

S2
GSM239052

S2
GSM246084

Head
GSM266765

S2
GSM280082

Ovary
GSM280083

Ovary
GSM280084

Ovary
GSM280085

Testis
GSM280086

Ovary
GSM280087

S2-NP
GSM280088

S2-NP
GSM312995

Head
GSM313160

Head
GSM313161

Head
GSM313162

Head
GSM313163

Head
GSM313164

Head
GSM313165

Head
GSM343287

Embryo
GSM379050

Ovary
GSM379051

Ovary
GSM379052

Ovary
GSM379053

Ovary
GSM379054

Ovary
GSM379055

Ovary
GSM379056

Ovary
GSM379057

Ovary
GSM379058

Ovary
GSM379059

Ovary
GSM379060

Ovary
GSM379061

Ovary
GSM379062

Ovary
GSM379063

Ovary
GSM379064

Ovary
GSM379065

Ovary
GSM379066

Ovary
GSM379067

Ovary
GSM424739

S2
GSM424740

S2
GSM424741

S2
GSM467729

Female-body
GSM467730

Female-body
GSM467731

Female-body
M002

CS
M003

Male-body
M004

Male-body
M005

ML-DmD32
M006

ML-DmD32
M029

OSC
M030

OSC
M031

OSC
M032

S2-R+
M033

S2-R+
M034

S2-R+
M035

S2-R+
M036

S2-R+
M037

S2-R+
M038

S2-R+
M039

S2-R+
M048

S2-R+
OSS2

OSS
OSS6

OSS
OSS7

OSS
OSS8

OSS
S1

Head
S10

Embryo
S11

Embryo
S12

Embryo
S13

Embryo
S14

Embryo
S15

S2-GMR
S16

Kc
S17

Larvae
S18

Larvae
S19

Pupae
S2

Head
S20

Pupae
S21

Disc
S22

Head
S23

Female-body
S24

Male-body
S25

Larvae
S26

Larvae
S27

Pupae
S28

Pupae
S29

Head
S3

Male-body
S30

S2-GMR
S31

S2
S32

S2
S33

Kc
S34

Kc
S35

Kc
S4

Female-body
S5

Disc
S6

Embryo
S7

Embryo
S8

S2
S9

Embryo
SRR001337

Head
SRR001338

Head
SRR001339

Head
SRR001340

Head
SRR001341

Head
SRR001342

Head
SRR001343

Head
SRR001344

Head
SRR001345

Head
SRR001346

Head
SRR001347

Head
SRR001348

Head
SRR001349

Head
SRR001664

Head
SRR010951

Ovary
SRR010952

Ovary
SRR010953

Ovary
SRR010954

Ovary
SRR010955

Ovary
SRR010956

Ovary
SRR010957

Ovary
SRR010958

Ovary
SRR010959

Ovary
SRR010960

Ovary
SRR014268

Embryo
SRR014269

Embryo
SRR014270

Embryo
SRR014271

Embryo
SRR014272

Embryo
SRR014273

Ovary
SRR014274

Ovary
SRR014275

Ovary
SRR014276

Ovary
SRR014277

Ovary
SRR014278

Ovary
SRR014279

Ovary
SRR014280

Ovary
SRR014281

Ovary
SRR014282

Ovary
SRR023197

S2
SRR023399

S2
SRR023400

S2
SRR023402

S2
SRR023407

S2
SRR029028

S2
SRR029029

S2
SRR029030

S2
SRR029031

S2
SRR029032

S2
SRR029033

S2
SRR029608

Head
SRR029633

Head
SRR030145

gb3
SRR031692

Head
SRR031693

Head
SRR031694

Head
SRR031696

Head
SRR031697

Head
SRR031698

Head
SRR031699

Head
SRR031700

Head
SRR031701

Head
SRR031702

Head
SRR031703

Head
SRR031704

Head
SRR032092

S2
SRR032093

S2
SRR032094

S2
SRR032095

S2-NP
SRR032096

S2-NP
SRR032152

Head
SRR060643

Testis
SRR060644

Ovary
SRR060645

Testis
SRR060646

Ovary
SRR060647

Ovary
SRR060648

Ovary
SRR060649

Ovary
SRR060650

Testis
SRR060651

Ovary
SRR060652

Testis
SRR060653

Ovary
SRR065151

Ovary
SRR065152

Ovary
SRR065153

Ovary
SRR065154

Ovary
SRR065155

Ovary
SRR065800

Ovary
SRR065801

Ovary
SRR065802

Ovary
SRR065803

Ovary
SRR065804

Ovary
SRR065805

Ovary
SRR065806

Ovary
SRR065807

Ovary
SRR097865

S2-NP
SRR097866

S2-NP
SRR097867

S2-NP
SRR298536

Ovary
SRR298537

Ovary
SRR298711

Ovary
SRR298712

Ovary
SRR317110

Ovary
SRR317111

Ovary
SRR317112

Ovary
SRR317113

Ovary
SRR317114

Ovary
SRR317115

Ovary
SRR317116

Ovary
SRR317117

Ovary
SRR341115

S2
SRR341116

S2
SRR341117

S2
SRR341118

S2
SRR351332

Mixed-body
SRR351333

Mixed-body
T004

OSC
T005

CME-L1
V001

Embryo
V002

Embryo
V003

S2
V006

Female-body
V007

Head
V008

S2
V009

CME-L1
V010

ML-DmD20-C5
V011

Sg4
V012

Male-body
V013

Head
V014

DTT
V015

DreRFHV
V018

Kc167
V019

GM2
V020

S2-R+
V021

ML-DmD21
V022

ML-DmD32
V023

Head
V024

Kc167
V025

S2-R+
V026

1182-2H
V027

ML-DmD21
V028

CME-W1-Cl.8+
V029

ML-DmD9
V030

ML-DmD8
V031

GM2
V032

S1
V033

CME-W1-Cl.8+
V034

ML-DmD16-C3
V035

ML-DmD32
V036

ML-DmD20-C5
V037

S2
V038

S2
V063

Ovary
V0632

Ovary
V064

Ovary
V0642

Ovary
V065

Ovary
V0652

Ovary
V066

Ovary
V0662

Ovary
V067

S2-NP
V073

mbn2
V074

S3
V075

ML-DmBG1-C1
V076

ML-DmBG3-C2
V077

Head
V078

Head
V079

Head
V080

Head
V081

Embryo
V082

Embryo
V083

Male-body
V084

Female-body
V085

CME-W2
V086

Female-body
V088

Ovary
V0882

Ovary
V089

Ovary
V0892

Ovary
V090

Male-body
V091

fGS/OSS
V092

Male-body
V093

Male-body
V094

S2-R+
V095

S2-R+
V096

Ovary
V097

Ovary
V098

Ovary
V125

ML-DmD9
V126

CME-L1
V127

G2
V128

S3
V129

ML-DmBG1-C1
V130

ML-DmBG3-C2
V131

ML-DmD16-C3
V132

ML-DmD32
V133

Sg4
V134

ML-DmD8
V135

CME-W2
V136

Male-body
V137

Head
V138

Male-body
V139

Female-body
V140

Female-body
V141

Female-body
V142

Female-body
V144

OSC
V145

S2
V146

S1
V147

1182-2H
V148

mbn2
GSM1528798

follicle cells
................................................................................................................................AGATATGTTTGATATTCTTGGTTG......................................................................................................................241118495.0011849500001161471842771329151710032071000016610628018201920101411521191322115193273324147316212413000594713000000000000000001066113281412298526433694591796819519159012312185632932217948124544229632774218631722851512210011710536213372872662696029933031029022227617120274240401180185852402652272241923602910150116170514930110717571169223553292026130786421128348201170043791371610303842401543321090010001419111403812237852158714516159149262296777085710946641425122701005029042185922349136216117010739334153181314331948751031211817569699501090649521789112306083686116417516202945228991849133119252588256580882639329252511928661161363713413434392111146731626
................................................................................................................................AGATATGTTTGATATTCTTGG.........................................................................................................................21151406.00514060000237210326200011001000000307118617181862101053011012014302122100007697160000000000000000069425376581501166169217493381982169451512875210131017178163123916596361549164228212332771691286128229897924737403346031050521313300500100000000358740620284763401563304024423351064270562806842200000485211120001000001011100000000021522270198105618531972241241130333981722062300211902101110815013050001400010001527020100041104140808150731543528293611815164805701331501300000000000117303230010252
................................................................................................................................AGATATGTTTGATATTCTTGGTT.......................................................................................................................23141187.004118700007220341403000000101000021417411831283650216320122451157310200012820000000000000000012413210311822541151413253011142223681910287842114227787181141387127464501210382913635122732001332112114351080011153352315000000020000311719780605542276314588812714945562962680000022372033000210331031210000000322044320998654299632031861378166540843612183110001350150201250934041159100217128501213132033141942301527913025483135392811384028834366147160332201500010400050120914363017114506
................................................................................................................................AGATATGTTTGATATTCTTG..........................................................................................................................20137916.0037916000027000021000100000000100013531093703402217151300100000000000000000014813000000000000000001423151877001200011122296805217489121104030231601136717624027132922264101160101015000083000000020280100001000000002410238201525191312124776122407362200536342316100000417400000001000000000000000000010026111362153482000000045210416100016240312000410000000120110000000110001400371683957721716135120110801113300010000000000013102000000013
................................................................................................................................AGATATGTTTGATATTCTTGGT........................................................................................................................22128661.0028661000031123201000001102010000393516756172576110223134310612210230006957800000000000000000153136100175519415521320350121421873963207119434270616351182613721603422651251192515158111614151543820018235113203000002050076726520382103463598071885993649224973570000001198002370000170000084000000001121051030768250749991211842610267687713112200015402204003161605451062010100281636100033221042231411621101555364130851896182211173840582105319140301012223085024779823243452322
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA..............................................................................23116237.0016237000030023412100000001507039141927183230039110231313521910818231919151200189300000000000000000212017300155487222173524111668104115459323218512211305129471101908145240804200000000002264082281321927295735280000060750103955037271446392918207126116324201726458249400811660000034003000155164931332116361211513101800900001815046494233076462245491721322912970223316571131051057517268933713972193157299835784254418731443034315648770848788119100553140183816921516120152166313217003372580666771318163406712824281391911161548527121214733710
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT...............................................................................22115141.0015141000020001101020000000323009629244988330415136327116414111781114131257240530000000000000000001661861361937100543312432725111879206225313841504861324066401122180471708110500000000003417932134610161920131200000481130190537904621744943052318834154420792509611510140009112160000019000000120899811921422439522611314510049000059038838639684303912011737273325113497813155036125704863813331146763929462581163523402012024372526259876991112122972120925100103213782722152204435775877377226969487929752338826444846932158124731872613408434850
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT.....................................................................................................................2517758.0077580000171200303350000102010000036130115112612000110253842333000121650000000000000000044483045171742616826381418262171151030315142084936056711831735216055010219030130100041000052921656319130000000000000699306300801456146340564150000019900140000030000008700000023014511297735635773561522541938138621100600226421231061416191754042113161413186336811840103425131728625559566164102512733551236715101722198142131384824213129375141931512924923121733710373118487
................................................................................................................................AGATATGTTTGATATTCTT...........................................................................................................................1916421.006421000000000000000000000000000291419131721000000001000000000000011000000000000000000711371400000001147028113001520820010000201002248701401113090655700014110000000000000000000000000000000010951241072322383631620811470254650000013500000000010000000000000000000000032100100000000000130000714060000010000000020001000000000001100151017280411000000100010000000000000000400000000004
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT................................................................................2113581.00358100000000000100000000030000110000000011200120110031201234002000000000000000000070713575301201572216021624005233181520110915102007200010108039000000000010120200322903320000010552130204901521132361602977880506022652110040000000001000000216825011212201640040000120134615733382202910311251182157402113714851243236149281415292315284614161028104646345927210791818265112274942131424036193411594273273331267102851103780
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA.....................................................................................................................2512663.0026630000000001000000000000000000000000010100000110001000000000000000000000000000151691820023132010300101310035831026400000203012505031110502400001000000000000000000000000000000018518701360012610129031179169300000339000100000000000000000000000030053269010995447495100341522000000322111626412011101100001142011000311020101331781726562000540521213326403112000000000118212110072121
.........................................................................................................................................................................CCCAGGAATCAAACATATTA.................................................................................2012459.0024590000000000000000000000000111200000010100004000000001110001100000000000000000035611000000400010001010000003226001000100020000010000000000000000000401000103000000005190008160511622326118501201140001000001000000000000001512833000000100020000000200023290447216329152524314531412845396413167391611913361268190107191932006402812225213982111841202181003917873291267661586251173584850
................................................................................................................................AGATATGTTTGATATTCT............................................................................................................................1811810.00181000000000000000000000000000002268910464000000000000000000000000000000000000000000866102000000000010020000013000000100000004610300110261018350047401000020000000000000000000000000047255010531321056922231221755000001080000000000000000000000000000000502300000000100000001000000000000000000010000000000000000001000053100100000000000040000000000000000100000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTT......................................................................................................................2411545.001545000021000010000000000000000000000001101421050243110330000000000000000000000065214232360312021023903110800212521252031630000080650002160150580000150000010002431411000012000013001848903101396646813858040010077001000000100000042000000000100028751943818184618511900005802234231201512861020106220041337010001010202011020041101003000100000123001000000000000000000000018
.................................................................................................................................GATATGTTTGATATTCTTGGTTG......................................................................................................................231855.00855000000000101000000000000000050000000000000000000000000001000000000000000000031331118705510020331210310160331166000113210130000050301300000010000100000000000000000000010619160181033269356101118800000790000000000000000000000001000000431059302812293212000000000000110000020000100000001001100105110102010010111030020000102014050010000020011000100001200154
................................................................................................................................AGATATGTTTGATATTCTTGT.........................................................................................................................211804.00804000000000000001000000000000000000000000010000000000000000000000000000000000010010000000000000030000005000020000000217319030319049348350020000000000000000110000000000000005371043007642400560100300000540020000000000000010000000000000000300010200000000021000001010000020000000000000000000000001000228110002000000101000000000000000000100000002000
................................................................................................................................AGATATGTTTGATATTCTTGGTTA......................................................................................................................241793.00793000051010824220000000000000000000000000000000100000000000000000000000000000022001943150000000210000009020602000010802100003102002000110313001000000000000000000000000193001310122242441902720000055000000000110000000000000000000045549646322551090100136000000000000000000001000000000000000000015000000001190000000000001020000000000000000010000000000
................................................................................................................................AGATATGTTTGATATTCTTGA.........................................................................................................................211752.00752000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010100021000000000000000170000301030150000000000000000000000000000000000008999057201449135099019710000056000000000000000000000000000000000020002000011000000000000000000000000000000000000000000000000010000000010000000000000000000000000000000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTA.......................................................................................................................231687.006870000000000000000000000000000000000000000000000001000000000000000000000000000001101013000010000001000000000001000000002001010400000000001201003100001100100000000000000191609115100406213000000110001000000000000000000000001000442064117953124126100053000000000000000000000000000000000000000100000400010011010100202000010001000000000000000000000003
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA.............................................................................241553.0055300000000000000000000000000000000000000000121000110001000000000000000000000000123040001321310001010012407711000012000010000111000310000000000000000001003174000000000003501001200070300000061031000101000000000000005010000200010120004000011010032000000001110130012021104103164615228554013305573091002015211001270231330005122060121020114322120
....................................................................................................................................ATGTTTGATATTCTTGGTTG......................................................................................................................201517.005170000000001000000000003000000000000000000100100011002100000000000000000000000023101000000000101000000000001000000000000000000000000000002110002003211130004000000000003301100211001000000012210000100000000020000000104511002210020010000012000000000112300041000000020010010100005141900221032500201020000011303601000300100010011011419317
................................................................................................................................AGATATGTTTGATATTCTTT..........................................................................................................................201462.0046200000000000000000000000000000000000000000000000000000000000000000000000000000000300000000002000000000400000000000000322000200047534390000000000000000000000000000000000001006003700236013041920000014000000000000000000000000000000000000000000000002100000000400000000000000000000000000000000000001040100100000000000000000000000000000000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTATC.....................................................................................................................251432.00432000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000035676000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................ATATGTTTGATATTCTTGGTTG......................................................................................................................221427.00427000000000000000000000000000011321000000000000000000000000000000000000000000001020001301000111100011049040001000200000000010000000000001000000000010000000000000000000400000031312030000000000000000000000000000000000100011316206266001000000000000001020000011000000000100000112000001010060013020000000110104101101000000000012000011010243
.................................................................................................................................GATATGTTTGATATTCTTG..........................................................................................................................191426.00426000000000000000000000000000000333200000000000000000000000000000000000000000000000130000000000200100000090000000000106040000101014255000000000000000000000000000000000000332701900174003612004620000059000000000000000000000000000000000110001000000000000000000000000000000000000000000000000000000001110000000000000000000000000000000000000000000
.........................................................................................................................................................................CCCAGGAATCAAACATATT..................................................................................191409.0040900000000000000000000000000002211010000000000000000000000010000000000000000003445000000001010003000000000010000000000000000000013000010000000000001000100000000000300065010031312317000000400200000000000000000000000000000000000000100000010133210046400509212012031113531000200010105341613810190000410000001011500001000010060278101115915300
................................................................................................................................AGATATGTTTGATATTCTTGGA........................................................................................................................221369.0036900001000000000000000000000000000000000000000000000001000000000000000000000000300000000000000000000000300000000000000500013513010000000000000000000000000000000000000002530016011439217136257200000340000000000000000000000000000000274252215000050000000000000000000000000000000000000010000000000000010000000000000000000000000000000000000000011
................................................................................................................................AGATATGTTTGATATTCTTGGTTAA.....................................................................................................................251346.0034600000012000000000000000000000000001000000000000000000000000000000000000000001000015000500000000010000000000000001005000000000000000000000000000000000000000000000000007602003103110700000010000000000000000000000000000000375272635343081000000000000000000000010000000000000000000000001000000000001000000300000000000000000000000000000001000
.................................................................................................................................GATATGTTTGATATTCTTGG.........................................................................................................................201346.003460000000000000000000000000000100000000000000000000000000000000000000000000000101000000000002001200000015000000001100002101030005455100000001000000000000000000000000000252602410111412823447220000031000000000000000000000000000000011261004100100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTAA......................................................................................................................241345.00345000010000000000000000000000000000000000000000000100000000000000000000000000000000150060000000000000000000000000000030100000000000000000001000000000000000000000000000017010021000001000000500000000000000000000000000000002426113341401898000000000000000000000000000000000000000000030011000000000001000000001000000010000000000000000000000000
.................................................................................................................................GATATGTTTGATATTCTTGGT........................................................................................................................211335.0033500000000000100000000000000000485010000100000000000000000000000000000000000002202000000010000000000002002104000000000100000010402200000000100000000000000000000000000081200102641001032700000080000000000000000000000000000000862813884170000000000000002000000100010000000000001000012000102013200000000001100000402000000000000000000000011573
......................................................................................................................................GTTTGATATTCTTGGTTG......................................................................................................................181315.003150000000000000000000011000000000000000000000001100100000000000000000000000000001202031001001000200013030003000010000000000000010100000000000000004134346000000000000000150020080300000000003100000000000000000000000205431200110000000100002200000000001101101000000011010100160013140243051149111125002140122600611110044000000002000121168
..........................................................................................................................................................................CCAGGAATCAAACATATTATTA..............................................................................221294.0029400000000000000000000000100000000000000010010100000020000000000000000000000001001000000000001000000000005002000000000000000010000000000000000000000000100000000000000012020001010409300000100000000000000000000000069602000000000000000000000221830000011100000225310181705021111417371011401613100702102011054505129010621201002001001131520
.................................................................................................................................GATATGTTTGATATTCTTGGTT.......................................................................................................................221289.00289000000000000000000000000001000000000000000000000000000000000000000000000000010021200000000000100000024002000000000001000010400003000000000000000000000000000000000000880400830110501210000025000000000000000000000000000000014441241889301000000010000000000001000000200000000000000300110001000010200000000000000400100000000000000000000010110
..........................................................................................................................................................................CCAGGAATCAAACATATTATT...............................................................................211285.00285000000000000000000000000000210000000000001100000000000000000000000000000000044310000000000000000000000010000000000001000000001000000000000000100000000000000000007100050202212513093000003010000000000000000000000101020000000011100000000000000212501110111030001141000391303030061501001161002000080120101104140271701181501400510201242510
....................................................................................................................................ATGTTTGATATTCTTGGT........................................................................................................................181203.00203000000000000000000000001000000000000000000000000000100000000000000000000000010000000000000000000000000000000000000010000000000000000000000020000111000000000000000000010000010200002000000000000010000000000000000000002000100000000000000000000000000000001000000000000000050110000490013101000000001000000000000000000000010000000012116
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAAA............................................................................251203.00203000000000000000000000000000000000001001000000100010010000000000000000000000000000000030000000000000000001000001000000000000000000000000000000002010110103100000000000000100010000000000000021000000000000000000000000010011103230100100000000010000000100010011010000110010530151250190010120002000002306000000009200000400200100100011220
...................................................................................................................................TATGTTTGATATTCTTGGTTG......................................................................................................................211200.002000000000000010000000010000000000000000100000000021010000000000000000000000000010120000000000200000000000000010000000000000000000000000000000200000100000000000000000001001002103000000000023000000000000000220000000001310001001001001000022000000001011000000000010023001003700020203002000202001011000000500002300000001001000001103199
................................................................................................................................AGATATGTTTGATATTCTTGGTTGC.....................................................................................................................251175.001750000000000010000000000000000000000000000000000100000000000000000000000000000011401000001000000310001180103130000001030010001000010000000000000000000000000000000000003702105114030100000012000000000000000000000000000000074131412497321121000000000000100000000000000000000000010000000100101010000000000010031000000000000000000010000013
................................................................................................................................AGATATGTTTGATATTCTTGGTTAAA....................................................................................................................261165.0016500000000000000000000000000000000000000000000000000000000000000000000000000000000020002000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001621192528956000000000000000000000000000000000000000000000000000000000000000010010000000001000000000000000000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGG.....................................................................................................................251163.001630000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000000000000000000000000010000000010000000000000000000000001117080014808094970000037000000000000000010000000000000011001020200000000000000000000000001000000000000000000001000110210140000000000000010000000000000000600000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTC......................................................................................................................241158.00158000020100010000000000000000000000000000000000000000000000000000000000000000010111000001000110000000007000100000100101100000001000000000000000000000000000000000000000330100831400000000002100000000000000000000000000000007214176465000061000000000000000010000000000000000000000001000300000020000001000000071010000000000000200000000003
................................................................................................................................AGATATGTTTGATATTCTTGGC........................................................................................................................221150.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000020000001000000000000002000002200000000001000000000000000000000000000000940600510716710200000310000000000000000000000000000000112141014020010000000000000000000000000000000000000010100000700101030000010000000040000000000000000000000000004
.....................................................................................................................................TGTTTGATATTCTTGGTTG......................................................................................................................191145.0014500000000000000000000120000000000000020000000000000100000000000000000000000000010010000000000000000100700440000100000000000000000000000000000100001002103000000000000000020000020010000000311000000000000000100000000000017025041620000000011000000000000010010000000001000000500030201510001010001110300000010010100000000000000100000219
................................................................................................................................AGATATGTTTGATATTCTTGC.........................................................................................................................211137.001370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000100000100000000000000000000010000000000000001619090013815060700000038000000000000000000000000000000000110001000010000000000000000000000000000000000000000000010000010010000000000000100000000000000000100000000000
....................................................................................................................................ATGTTTGATATTCTTGGTT.......................................................................................................................191136.0013600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000002000000000000000000000000000000000002000001100000000000000000001000002010100000010000000000000000000100000000000001000000000000000000000000000000000000000000100000024000201010101111102100001001000000110000000000000000000010087
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTT....................................................................................................................261127.00127000010000000000000000000000010000000000000000000000000001110000000000000000010010000000000000000200001010000000000000000000000001000000000000000000100000000000000000410600311231155000005000000000000000000000000000000051466311200100000000000010000000001100011001020000000000000210200400200101000002020000000000110001010000005138
..................................................................................................................................ATATGTTTGATATTCTTGGTT.......................................................................................................................211112.001120000000000001000000000000000104110001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000105100000000010000000000000000000000000000000104410010000000000000010000000000000000000000000000800000002000000110001010000010000000000000000000000000000165
................................................................................................................................AGATATGTTTGATATTCTTGGG........................................................................................................................221110.00110000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000000001000000100000000000000000000000000000000330000120302292040000070000000000000000000000000000000111151202011000000000000000000000000000000000000000101000000000011010010000000000000000000000000000000000000001
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAA....................................................................................................................261105.001050000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000010010000000000000000000000000000000000000005605009103060105000008000000000000000000000000000000084424446000000000000001000001000001000000000000000000000000100000000000000000000001000000000000000000000000120
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTA....................................................................................................................261103.001030000100001000000000000000000000000000000000000100000100000000000000000000000101100000000000000000000010000000000000000000000000000000000000000000000000000000000000003201001200102020000030000000000000000000000000000000414684496001380000001000000000000010000000001000000000000000001010011000000000000100000000000000000000000000111
..................................................................................................................................ATATGTTTGATATTCTTGGT........................................................................................................................201101.001010000000000000000000000000001000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000010121000000000001000000000000000000000000000000111710010010000010000000000000000000000000000000001500000005000111101001000000000000000000000000011101100000154
................................................................................................................................AGATATGTTTGATATTCTTGGTAAA.....................................................................................................................25194.00940000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000000000000000000711713510531000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTC.......................................................................................................................23186.00860000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000010000000010000000000000000000000000000000000000005400006303100300000040000000000000000000000000000000010031001000030000000000000100001000000000010000000000000000000001010000000000000010000000000000000000000000001
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAG....................................................................................................................26175.00750000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301000100000100000010000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000105121100100000000002000020000011000002100000000000
..................................................................................................................................ATATGTTTGATATTCTTG..........................................................................................................................18173.007300000000000000000000000000001217710000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000001102000821810000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000000000000000000000000000000000
.............................................................................................................CTAATTGATGGTTCCAGTG..............................................................................................................................................19167.0067000000000000000000000000000000000000000000000001000000000000000000000000000000000000901200000100001103000530000001000000000000000000000000000000010101000000100000000000000000000000000000000000000000000000000000000000041012225300400001000000000000000200000001000000000000000000000000000100200000000010000000001000100000000100000
...................................................................................................................................TATGTTTGATATTCTTGGT........................................................................................................................19166.00660000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000101000000000000000001200000000000000000000000003110000000000000000000000000000000000000000000010000000001000105000000100000000000000100000000000000001000000000240
......................................................................................................................................GTTTGATATTCTTGGTTGT.....................................................................................................................19161.006100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000100000000000000000000000000000000001000000000000000000000000000000000000000100000014000001016102020300010002000111000000100022000010000000000013
....................................................................................................................................ATGTTTGATATTCTTGGTTGT.....................................................................................................................21161.00610000000000000000000000000000000000000000000000000001000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000001000010010000010001000000000007100010400000000000000000000200000000001000000001133
...............................................................................................................................GAGATATGTTTGATATTCTTGGT........................................................................................................................23160.00600000000000000000000000000001000000000000000000000000000010000000000000000000522000000000000000000000000002000000000000000000000000100000000000000000020000000000000001000110041052000000030001000000000000000000000000000010300001001000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000017
...................................................................................................................................TATGTTTGATATTCTTGGTT.......................................................................................................................20159.00590000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001101000000001000000000000000000000100000000000000000010010000000000000000002000000000000000020000000000000000000000000001000000100000000000000000000000000000000000000010000001200120001000000000100000000000100101000000000000000000000132
.........................................................................................................................................................................CCCAGGAATCAAACATATTATA...............................................................................22158.0058000000000000000000000000000000000000000000000000000000000000000000000000000000111000000120000000000000000000000000000000001000000000000000000100000000000000000000000010100000011021000000000100000000000000000000300000000000000000000000000011010000000000000001000030000020004020000110100000100000000000200120220200000100000150110
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTT..............................................................................23157.0057000000000000000000000000000000000000000000000000000000000000000000000000000015240000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001001000000000000000003100020010000010000000020000000000000200100000000000110000043000100010210000510000204020
..........................................................................................................................................................................CCAGGAATCAAACATATTAT................................................................................20156.0056000000000000000000000000000000100000000000000000000000000000000000000000000053020000000000000000000000000000000000000000000000100000000000000000000002000000000017000020000000102030000000000000000000000000000000000000000000001100000000001002100000000000000000000311110000002020000000000000001000000002000020000100000200000010000
................................................................................................................................AGATATGTTTGATATTCTTA..........................................................................................................................20154.005400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000065020011006050300000015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................GATATGTTTGATATTCTTGGTTGT.....................................................................................................................24153.00530000000000000000000000000000000000000000000000000000000000000000000000000000000010000112001000202000010100000000000000000000001000000000000000000000000000000000000000400001101000200000000000000000000000000000000000000202100120001000000000000200000000000000010000000000100000110001000000000000000000000000000010000000000000000212
droSim2
T-C-A------------------------------------------------------------------------------------------A-------AACGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTATCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAAAC------------------ACTCAGCT-----------CAAG---------SizeHit CountTotal NormTotalM023

Head
M024

Male-body
M025

Embryo
M053

Female-body
O001

Testis
O002

Head
SRR553485

Ovary
SRR553486

Ovary
SRR553487

Ovary
SRR553488

Ovary
SRR618934

Ovary
V044

Embryo
SRR902008

Ovary
SRR902009

Testis
SRR1275487

Male larvae
SRR1275485

Male prepupae
SRR1275483

Male prepupae
................................................................................................................................AGATATGTTTGATATTCTTGGTTG......................................................................................................................24123279.0023279669118077781221274206610498222116422188221980000
................................................................................................................................AGATATGTTTGATATTCTTGG.........................................................................................................................2113403.00340346111161254148597142134604771941194002
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT.....................................................................................................................2512918.00291881713643160711363518231118581257000
................................................................................................................................AGATATGTTTGATATTCTTGGTT.......................................................................................................................2312738.00273810021762375398916813414085651282360000
................................................................................................................................AGATATGTTTGATATTCTTG..........................................................................................................................2012541.00254144223351852721509231211510229001
................................................................................................................................AGATATGTTTGATATTCTTGGT........................................................................................................................2211008.0010088318222201112916353432211141344000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA.....................................................................................................................251946.0094629532800169142233241221379000
................................................................................................................................AGATATGTTTGATATTCT............................................................................................................................181655.006555482013045203005001000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA..............................................................................231615.006153711520142225557416327000
................................................................................................................................AGATATGTTTGATATTCTT...........................................................................................................................191562.005626240810937100223001000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT...............................................................................221434.004341401120111191521529161118000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGC.....................................................................................................................251230.00230138265710002100005000
.................................................................................................................................GATATGTTTGATATTCTTGGTTG......................................................................................................................231172.001727271530110000100000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTAA...................................................................................................................271171.00171000000263165370039000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTAAA..................................................................................................................281158.00158000100524248150000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGG.....................................................................................................................251151.0015163127320001000000000
................................................................................................................................AGATATGTTTGATATTCTTGGA........................................................................................................................221145.00145265090015937410003000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTT....................................................................................................................261135.001354524005423000106000
................................................................................................................................AGATATGTTTGATATTCTTGGTTA......................................................................................................................241133.0013302310081652440025000
................................................................................................................................AGATATGTTTGATATTCTTGGTTAA.....................................................................................................................251132.0013200080045554800111000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTA....................................................................................................................26194.0094000001201515900331000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAAA............................................................................25193.0093002000182237101012000
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT................................................................................21193.00934633071811113405000
................................................................................................................................AGATATGTTTGATATTCTTGGTTT......................................................................................................................24192.009230127000334011040000
....................................................................................................................................ATGTTTGATATTCTTGGTTG......................................................................................................................20191.0091823301311364200000
................................................................................................................................AGATATGTTTGATATTCTTGGTA.......................................................................................................................23186.0086131270013824140013000
................................................................................................................................AGATATGTTTGATATTCTTGGTAA......................................................................................................................24184.008400111005532290010000
...................................................................................................................................TATGTTTGATATTCTTGGTTG......................................................................................................................21169.0069338000313147000000
.........................................................................................................................................................................CCCAGGAATCAAACATATTA.................................................................................20169.00697100936300021100000
......................................................................................................................................GTTTGATATTCTTGGTTG......................................................................................................................18167.0067175100000143900000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAC.............................................................................24147.00471000123400000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTC.......................................................................................................................23146.0046342800000000002000
.................................................................................................................................GATATGTTTGATATTCTTGGTT.......................................................................................................................22138.0038000360011000000000
.........................................................................................................................................................................CCCAGGAATCAAACATAT...................................................................................18138.00380000162200000000000
................................................................................................................................AGATATGTTTGATATTCTTGGAC.......................................................................................................................23138.0038304200000100001000
....................................................................................................................................ATGTTTGATATTCTTGGTT.......................................................................................................................19133.0033320111102319000000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA.............................................................................24132.003230300081832301000
....................................................................................................................................ATGTTTGATATTCTTGGT........................................................................................................................18132.0032000111000128000000
..................................................................................................................................ATATGTTTGATATTCTTGGTTG......................................................................................................................22130.0030110660022002100000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAC....................................................................................................................26126.0026212300000000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTAT...................................................................................................................27124.0024000033104000013000
.................................................................................................................................GATATGTTTGATATTCTTGG.........................................................................................................................20123.0023010200100010000000
.........................................................................................................................................................................CCCAGGAATCAAACATATT..................................................................................19123.0023600031100001200000
................................................................................................................................AGATATGTTTGATATTCTTGGG........................................................................................................................22120.002087500000000000000
................................................................................................................................AGATATGTTTGATATTCTTGGAA.......................................................................................................................23120.002000010003850003000
................................................................................................................................AGATATGTTTGATATTCTTGGC........................................................................................................................22119.0019112310001010000000
.................................................................................................................................GATATGTTTGATATTCTTGGT........................................................................................................................21119.0019000170000200000000
.....................................................................................................................................TGTTTGATATTCTTGGTTG......................................................................................................................19119.0019001000002115000000
................................................................................................................................AGATATGTTTGATATTCTTGGTG.......................................................................................................................23118.0018171000000000000000
...................................................................................................................................TATGTTTGATATTCTTGGTT.......................................................................................................................20118.0018120000010211100000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAT....................................................................................................................26115.0015010200010000011000
...................................................................................................................................TATGTTTGATATTCTTGGT........................................................................................................................19114.0014000010001012000000
.....................................................................................................................................TGTTTGATATTCTTGGTT.......................................................................................................................18113.001300000005034100000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTC....................................................................................................................26111.001141300001000002000
......................................................................................................................................GTTTGATATTCTTGGTT.......................................................................................................................17111.001100000022016000000
.................................................................................................................................GATATGTTTGATATTCTTG..........................................................................................................................19110.001000090100000000000
....................................................................................................................................ATGTTTGATATTCTTGG.........................................................................................................................1718.00800000000107000000
......................................................................................................................................GTTTGATATTCTTGGT........................................................................................................................1618.00800000000008000000
..........................................................................................................................................................................CCAGGAATCAAACATATTATTA..............................................................................2218.00800100021100300000
.....................................................................................................................................TGTTTGATATTCTTGGT........................................................................................................................1718.00800000020006000000
................................................................................................................................AGATATGTTTGATATTCTTGGTAAA.....................................................................................................................2527.501500070011320010000
...................................................................................................................................TATGTTTGATATTCTTGG.........................................................................................................................1817.00700000100114000000
...................................................................................................................................TATGTTTGATATTCTTGGTTGT.....................................................................................................................2217.00711100001102000000
..................................................................................................................................ATATGTTTGATATTCTTGGTT.......................................................................................................................2117.00720010002000002000
................................................................................................................................AGATATGTTTGATATT..............................................................................................................................1627.0014000000102110000000
..........................................................................................................................................................................CCAGGAATCAAACATATTATT...............................................................................2117.00710000000000600000
................................................................................................................................AGATATGTTTGATATTCTTGA.........................................................................................................................2117.00740000000210000000
....................................................................................................................................ATGTTTGATATTCTTGGTTGT.....................................................................................................................2116.00600200000004000000
.....................................................................................................................................TGTTTGATATTCTTGG.........................................................................................................................1616.00600000000042000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTC......................................................................................................................2416.00612120000000000000
................................................................................................................................AGATATGTTTGATATTCTTGT.........................................................................................................................2116.00630030000000000000
...................................................................................................................................TATGTTTGATATTCTTGGTTGA.....................................................................................................................2215.00500000001103000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTTA...................................................................................................................2715.00500000001000004000
......................................................................................................................................GTTTGATATTCTTGG.........................................................................................................................1515.00500000000023000000
.........................................................................................................................................TGATATTCTTGGTTG......................................................................................................................1514.00400000000004000000
...............................................................................................................................GAGATATGTTTGATATTCTTGGTT.......................................................................................................................2414.00410010000000002000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTTAT..................................................................................................................2814.00400000000000004000
................................................................................................................................AGATATGTTTGATATTCTTGGTTTA.....................................................................................................................2514.00400000000000013000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTTAA..................................................................................................................2814.00400000010010002000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAAAA...........................................................................2614.00400000012010000000
..................................................................................................................................ATATGTTTGATATTCTTG..........................................................................................................................1813.00311100000000000000
...................................................................................................................................TATGTTTGATATTCTTGGTTGTAT...................................................................................................................2413.00310000000110000000
....................................................................................................................................ATGTTTGATATTCTTG..........................................................................................................................1613.00300000000012000000
.................................................................................................................................GATATGTTTGATATTCTTGGTA.......................................................................................................................2213.00300000000210000000
.........................................................................................................................................................................CCCAGGAATCAAACAT.....................................................................................1613.00300000000003000000
................................................................................................................................AGATATGTTTGATATTCTTGGTCT......................................................................................................................2413.00330000000000000000
.................................................................................................................................GATATGTTTGATATTCTTGGTTGT.....................................................................................................................2413.00300020000000001000
.................................................................................................................................GATATGTTTGATATTCTTGGTTGA.....................................................................................................................2413.00300000021000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTATT..................................................................................................................2813.00300000000000003000
........................................................................................................................................................TATCATTCAAAAGTT.......................................................................................................1513.00300000020010000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTAAT..................................................................................................................2813.00300000012000000000
....................................................................................................................................ATGTTTGATATTCTTGGTTGA.....................................................................................................................2113.00300000000003000000
.................................................................................................................................GATATGTTTGATATTCTTGGTTAA.....................................................................................................................2413.00300030000000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTAC.....................................................................................................................2513.00310000000110000000
...............................................................................................................................GAGATATGTTTGATATTC.............................................................................................................................1813.00300000300000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGATA...................................................................................................................2712.00200000001000001000
.........................................................................................................................................................................CCCAGGAATCAAACATA....................................................................................1712.00200000000002000000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATC...............................................................................2212.00210000000000100000
..........................................................................................................................................................................CCAGGAATCAAACATATTATTAA.............................................................................2312.00210000000010000000
................................................................................................................................AGATATGTTTGATATTCTTGGTCC......................................................................................................................2412.00220000000000000000
..................................................................................................................................ATATGTTTGATATTCTTGG.........................................................................................................................1912.00200000000101000000
................................................................................................................................AGATATGTTTGATATTCTTGGTGT......................................................................................................................2412.00200110000000000000
........................................................................................................................................TTGATATTCTTGGTT.......................................................................................................................1512.00200000000110000000
........................................................................................................................................................TATCATTCAAAAGTTCACCCAGGAA.............................................................................................2512.00200000101000000000
...................................................................................................................................TATGTTTGATATTCTTGGTTA......................................................................................................................2112.00200000000200000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTAC...................................................................................................................2712.00200100010000000000
....................................................................................................................................ATGTTTGATATTCTTGGTTA......................................................................................................................2012.00200000000110000000
................................................................................................................................AGATATGTTTGATATTCTTGAA........................................................................................................................2212.00210000000001000000
.................................................................................................................................GATATGTTTGATATTCTTGGTTT......................................................................................................................2312.00200020000000000000
................................................................................................................................AGATATGTTTGATATTC.............................................................................................................................1712.00200000000002000000
.........................................................................................................................................................................CCCAGGAATCAAACATATTT.................................................................................2012.00220000000000000000
...........................................................................................................................................................................CAGGAATCAAACATATTATT...............................................................................2012.00220000000000000000
......................................................................................................................................................................TCACCCAGGAATCAAACATATT..................................................................................2212.00200000000000200000
................................................................................................................................AGATATGTTTGATATTCTTGGTTTAT....................................................................................................................2612.00200000000000002000
................................................................................................................................AGATATGTTTGATATTCC............................................................................................................................1821.50330000000000000000
................................................................................................................................AGATATGTTTGATATTCTTT..........................................................................................................................2011.00110000000000000000
....................................................................................................................................ATGTTTGATATTCTTGGC........................................................................................................................1811.00100000000001000000
droSec2
T-C-A------------------------------------------------------------------------------------------A-------AATGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAAAC------------------ACTCAGCT-----------CAAG---------SizeHit CountTotal NormTotalM054

Female-body
V113

Male-body
V114

Embryo
V115

Head
................................................................................................................................AGATATGTTTGATATTCTTGGTTG......................................................................................................................2417104.0071046941248653
................................................................................................................................AGATATGTTTGATATTCTTGGTT.......................................................................................................................2311718.001718168751016
................................................................................................................................AGATATGTTTGATATTCTTGG.........................................................................................................................2111197.001197115551423
................................................................................................................................AGATATGTTTGATATTCTTGGT........................................................................................................................221636.006366018423
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT...............................................................................221577.005772039133385
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA..............................................................................231541.00541826302205
................................................................................................................................AGATATGTTTGATATTCTTG..........................................................................................................................201510.005104850520
.................................................................................................................................GATATGTTTGATATTCTTGGTTG......................................................................................................................231492.00492490020
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT.....................................................................................................................251443.00443283333988
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA.....................................................................................................................251152.001521275218
.................................................................................................................................GATATGTTTGATATTCTTGGTT.......................................................................................................................221108.00108106200
................................................................................................................................AGATATGTTTGATATTCTTGGTTT......................................................................................................................24197.009796001
.................................................................................................................................GATATGTTTGATATTCTTGG.........................................................................................................................20195.009594001
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT................................................................................21195.009554779
.........................................................................................................................................................................CCCAGGAATCAAACATATT..................................................................................19184.008400579
.........................................................................................................................................................................CCCAGGAATCAAACATATTA.................................................................................20168.0068041054
.................................................................................................................................GATATGTTTGATATTCTTGGT........................................................................................................................21143.004343000
..................................................................................................................................ATATGTTTGATATTCTTGGTTG......................................................................................................................22136.003629142
.................................................................................................................................GATATGTTTGATATTCTTG..........................................................................................................................19133.003333000
................................................................................................................................AGATATGTTTGATATTCTT...........................................................................................................................19131.0031140116
................................................................................................................................AGATATGTTTGATATTCTTGGA........................................................................................................................22130.003030000
....................................................................................................................................ATGTTTGATATTCTTGGTTG......................................................................................................................20126.002618413
................................................................................................................................AGATATGTTTGATATTCTTGT.........................................................................................................................21121.002114124
................................................................................................................................AGATATGTTTGATATTCTTGGTA.......................................................................................................................23120.002020000
.................................................................................................................................GATATGTTTGATATTCTTGGTTGT.....................................................................................................................24118.001817100
.....................................................................................................................................TGTTTGATATTCTTGGTTG......................................................................................................................19114.001411111
................................................................................................................................AGATATGTTTGATATTCTTGGTTA......................................................................................................................24114.001414000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGC.....................................................................................................................25114.001413010
..................................................................................................................................ATATGTTTGATATTCTTGGT........................................................................................................................20112.00126105
................................................................................................................................AGATATGTTTGATATTCT............................................................................................................................18111.00116005
..........................................................................................................................................................................CCAGGAATCAAACATATTATT...............................................................................21111.00113125
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA.............................................................................24111.00111136
....................................................................................................................................ATGTTTGATATTCTTGGTT.......................................................................................................................19110.00109100
....................................................................................................................................ATGTTTGATATTCTTGGT........................................................................................................................1819.0098010
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAA....................................................................................................................2619.0097101
..................................................................................................................................ATATGTTTGATATTCTTGG.........................................................................................................................1919.0096030
......................................................................................................................................GTTTGATATTCTTGGTTG......................................................................................................................1819.0097101
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTT....................................................................................................................2618.0087100
..................................................................................................................................ATATGTTTGATATTCTTGGTT.......................................................................................................................2118.0086002
................................................................................................................................AGATATGTTTGATATTCTTGGTAA......................................................................................................................2418.0088000
................................................................................................................................AGATATGTTTGATATTCTTGGTTAA.....................................................................................................................2516.0066000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGG.....................................................................................................................2516.0066000
...............................................................................................................................GAGATATGTTTGATATTCTTGGTT.......................................................................................................................2415.0055000
..........................................................................................................................................................................CCAGGAATCAAACATATTATTA..............................................................................2215.0050032
.................................................................................................................................GATATGTTTGATATTCTTGGTTT......................................................................................................................2315.0055000
................................................................................................................................AGATATGTTTGATATTCTTGA.........................................................................................................................2115.0055000
...............................................................................................................................GAGATATGTTTGATATTCTTGG.........................................................................................................................2215.0055000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTA....................................................................................................................2615.0054001
.....................................................................................................................................TGTTTGATATTCTTGGTT.......................................................................................................................1814.0042020
.................................................................................................................................GATATGTTTGATATTCTTGGTTGA.....................................................................................................................2414.0044000
...................................................................................................................................TATGTTTGATATTCTTGGT........................................................................................................................1914.0042011
...................................................................................................................................TATGTTTGATATTCTTGGTTG......................................................................................................................2114.0044000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAG....................................................................................................................2613.0030003
................................................................................................................................AGATATGTTTGATATTCTTGGTTC......................................................................................................................2413.0033000
................................................................................................................................AGATATGTTTGATATTCTTGGTAAA.....................................................................................................................2513.0033000
................................................................................................................................AGATATGTTTGATATTCTTT..........................................................................................................................2013.0033000
.................................................................................................................................GATATGTTTGATATTCTTGT.........................................................................................................................2013.0033000
.............................................................................................................CTAATTGATGGTTCCAGTG..............................................................................................................................................1913.0032010
..................................................................................................................................ATATGTTTGATATTCTTG..........................................................................................................................1813.0033000
................................................................................................................................AGATATGTTTGATATTCTTA..........................................................................................................................2013.0033000
......................................................................................................................................GTTTGATATTCTTGGTTGT.....................................................................................................................1912.0021100
.......................................................................................................................................TTTGATATTCTTGGTTGT.....................................................................................................................1812.0021010
.................................................................................................................................GATATGTTTGATATTCTTGGTTGC.....................................................................................................................2412.0022000
...................................................................................................................................TATGTTTGATATTCTTGGTT.......................................................................................................................2012.0022000
.................................................................................................................................GATATGTTTGATATTCTTGGTTA......................................................................................................................2312.0022000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTTT...................................................................................................................2712.0022000
...................................................................................................................................TATGTTTGATATTCTTGG.........................................................................................................................1812.0022000
...............................................................................................................................GAGATATGTTTGATATTCTTGGTTG......................................................................................................................2512.0022000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAAA............................................................................2512.0021010
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAAA...................................................................................................................2712.0022000
.................................................................................................................................GATATGTTTGATATTCTTGGA........................................................................................................................2112.0022000
...................................................................................................................................TATGTTTGATATTCTTGGTTGA.....................................................................................................................2212.0020101
..........................................................................................................................................................................CCAGGAATCAAACATATTA.................................................................................1912.0020002
..................................................................................................................................ATATGTTTGATATTCTTGGTTGT.....................................................................................................................2311.0011000
..........................................................................................................................................................................CCAGGAATCAAACATATT..................................................................................1811.0010001
.................................................................................................................................GATATGTTTGATATTCTTGGTTTA.....................................................................................................................2411.0011000
.................................................................................................................................GATATGTTTGATATTCTTGGTTGTAA...................................................................................................................2611.0011000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTTC...................................................................................................................2711.0011000
..................................................................................................................................ATATGTTTGATATTCTTGGTTGTTTC..................................................................................................................2611.0010010
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTAA...................................................................................................................2711.0010001
....................................................................................................................................ATGTTTGATATTCTTGGTTGTA....................................................................................................................2211.0011000
.................................................................................................................................GATATGTTTGATATTCTT...........................................................................................................................1811.0011000
................................................................................................................................AGATATGTTTGATATTCTTGGC........................................................................................................................2211.0010001
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTCA...................................................................................................................2711.0011000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTAAA..................................................................................................................2811.0011000
.........................................................................................................................................................................CCCAGGAATCAAACATATA..................................................................................1911.0010001
droYak3
TTC-A------------------------------------------------------------------------------------------A-------AACGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG-CCAATCTACTAAAAC--------------------------------------------------SizeHit CountTotal NormTotalM026

Head
M043

Female-body
M056

Embryo
V046

Embryo
V052

Head
V058

Head
V120

Male-body
SRR1275488

Male larvae
SRR1275486

Male prepupae
SRR1275484

Male prepupae
GSM1528802

follicle cells
................................................................................................................................AGATATGTTTGATATTCTTGGTTG......................................................................................................................24126893.00268931996823715902993119102633
................................................................................................................................AGATATGTTTGATATTCTTGGTT.......................................................................................................................23114556.0014556184246111828402300272
................................................................................................................................AGATATGTTTGATATTCTTGG.........................................................................................................................2116436.006436882460387561600000
................................................................................................................................AGATATGTTTGATATTCTTGGT........................................................................................................................2213675.0036752114762127202700040
................................................................................................................................AGATATGTTTGATATTCTTG..........................................................................................................................2012011.002011991633252031710114
................................................................................................................................AGATATGTTTGATATTCTTGGTC.......................................................................................................................2311638.00163861163100000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT.....................................................................................................................251678.006781431472658146000104
.................................................................................................................................GATATGTTTGATATTCTTGGTTG......................................................................................................................231647.006471641500000000
................................................................................................................................AGATATGTTTGATATTCTTGGC........................................................................................................................221638.006381763000000000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA..............................................................................231393.003931510137200611140000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA.....................................................................................................................251309.00309492445111000161
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT...............................................................................221303.003033436771001528130000
.................................................................................................................................GATATGTTTGATATTCTTGG.........................................................................................................................201246.002460243300000000
.................................................................................................................................GATATGTTTGATATTCTTGGTT.......................................................................................................................221227.0022702091800000000
.................................................................................................................................GATATGTTTGATATTCTTGGT........................................................................................................................211144.001440141300000000
.................................................................................................................................GATATGTTTGATATTCTTG..........................................................................................................................191140.001400139100000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTT......................................................................................................................241139.0013945746300000128
................................................................................................................................AGATATGTTTGATATTCTTGGTTGC.....................................................................................................................251102.00102939000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTA.......................................................................................................................231102.001021257600000000
................................................................................................................................AGATATGTTTGATATTCTT...........................................................................................................................19162.0062937405400003
................................................................................................................................AGATATGTTTGATATTCTTGGA........................................................................................................................22152.0052339900000001
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT................................................................................21152.00521145422330000
................................................................................................................................AGATATGTTTGATATTCTTGC.........................................................................................................................21148.0048004800000000
..................................................................................................................................ATATGTTTGATATTCTTGGTTG......................................................................................................................22145.00453271500000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTA......................................................................................................................24140.00401211800000000
....................................................................................................................................ATGTTTGATATTCTTGGTTG......................................................................................................................20137.0037320830120000
................................................................................................................................AGATATGTTTGATATTCT............................................................................................................................18135.0035622311200000
................................................................................................................................AGATATGTTTGATATTCTTGGTTC......................................................................................................................24131.0031062310000001
................................................................................................................................AGATATGTTTGATATTCTTGGTTGG.....................................................................................................................25126.0026102500000009
...............................................................................................................................GAGATATGTTTGATATTCTTGGTT.......................................................................................................................24126.0026052100000000
..................................................................................................................................ATATGTTTGATATTCTTGG.........................................................................................................................19123.0023017600000000
....................................................................................................................................ATGTTTGATATTCTTGGTT.......................................................................................................................19123.00230101210000000
......................................................................................................................................GTTTGATATTCTTGGTTG......................................................................................................................18121.0021015420000000
................................................................................................................................AGATATGTTTGATATTCTTGT.........................................................................................................................21120.002017801300000
.....................................................................................................................................TGTTTGATATTCTTGGTTG......................................................................................................................19116.0016013210000000
.........................................................................................................................................................................CCCAGGAATCAAACATATTA.................................................................................20115.001531062300000
................................................................................................................................AGATATGTTTGATATTCTTGGAC.......................................................................................................................23115.0015101400000000
................................................................................................................................AGATATGTTTGATATTCTTGGTAA......................................................................................................................24114.001406800000000
...................................................................................................................................TATGTTTGATATTCTTGGTTG......................................................................................................................21114.001418500000000
................................................................................................................................AGATATGTTTGATATTCTTGGTG.......................................................................................................................23114.0014131000000000
..................................................................................................................................ATATGTTTGATATTCTTGGT........................................................................................................................20112.0012010200000000
....................................................................................................................................ATGTTTGATATTCTTGGT........................................................................................................................18110.0010010000000000
..................................................................................................................................ATATGTTTGATATTCTTG..........................................................................................................................18110.001019000000000
..................................................................................................................................ATATGTTTGATATTCTTGGTT.......................................................................................................................21110.001003700000000
..........................................................................................................................................................................CCAGGAATCAAACATATTATT...............................................................................2119.00913320000000
................................................................................................................................AGATATGTTTGATATTCTTGGG........................................................................................................................2218.00816000100000
................................................................................................................................AGATATGTTTGATATTCTTGGTTAA.....................................................................................................................2517.00703400000000
.................................................................................................................................GATATGTTTGATATTCTTGGTTGT.....................................................................................................................2417.00707000000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTT....................................................................................................................2617.00713110100000
.................................................................................................................................GATATGTTTGATATTCTTGGTTGA.....................................................................................................................2417.00707000000000
.........................................................................................................................................................................CCCAGGAATCAAACATATT..................................................................................1916.00610210200000
..........................................................................................................................................................................CCAGGAATCAAACATATTATTA..............................................................................2216.00611220000000
................................................................................................................................AGATATGTTTGATATTCTTGAC........................................................................................................................2215.00500500000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAA....................................................................................................................2615.00502210000000
...................................................................................................................................TATGTTTGATATTCTTGGTT.......................................................................................................................2015.00504100000000
................................................................................................................................AGATATGTTTGATATTCTTGGCC.......................................................................................................................2315.00500500000000
................................................................................................................................AGATATGTTTGATATTCTTGA.........................................................................................................................2115.00503100100000
...................................................................................................................................TATGTTTGATATTCTTGG.........................................................................................................................1815.00504100000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTC....................................................................................................................2615.00510400000000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATC...............................................................................2214.00400310000000
.................................................................................................................................GATATGTTTGATATTCTT...........................................................................................................................1814.00404000000000
.................................................................................................................................GATATGTTTGATATTCTTGGTC.......................................................................................................................2214.00400400000000
.................................................................................................................................GATATGTTTGATATTCTTGGA........................................................................................................................2114.00404000000000
droEre2
TTC-A------------------------------------------------------------------------------------------A-------ATCGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTAGCCTTCG-CCAATCTACTAAAAC--------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body
M057

Embryo
V060

Head
V040

Embryo
V107

Male-body
V108

Head
GSM1528801

follicle cells
................................................................................................................................AGATATGTTTGATATTCTTGGTTG......................................................................................................................24114528.001452812223157163529138526
................................................................................................................................AGATATGTTTGATATTCTTGGTT.......................................................................................................................2319868.009868523718095013322772
................................................................................................................................AGATATGTTTGATATTCTTGGT........................................................................................................................2212882.00288223063061022759172
................................................................................................................................AGATATGTTTGATATTCTTGG.........................................................................................................................2112704.0027042150503628350
................................................................................................................................AGATATGTTTGATATTCTTG..........................................................................................................................2011312.0013121226231100493
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT...............................................................................2211139.0011393126345859490
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA..............................................................................231973.009731517194947520
.................................................................................................................................GATATGTTTGATATTCTTGGTTG......................................................................................................................231829.00829825100003
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT.....................................................................................................................251476.0047620725222182137
.................................................................................................................................GATATGTTTGATATTCTTGGTT.......................................................................................................................221438.004383542100180
................................................................................................................................AGATATGTTTGATATTCTTGGTTT......................................................................................................................241249.002491867051248
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT................................................................................211193.001936101191660
.................................................................................................................................GATATGTTTGATATTCTTGG.........................................................................................................................201186.00186186000000
.................................................................................................................................GATATGTTTGATATTCTTGGT........................................................................................................................211183.00183181000011
................................................................................................................................AGATATGTTTGATATTCTTGGTC.......................................................................................................................231155.00155214900004
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA.....................................................................................................................251110.0011094203290
.........................................................................................................................................................................CCCAGGAATCAAACATATTA.................................................................................20198.009810026890
.................................................................................................................................GATATGTTTGATATTCTTG..........................................................................................................................19182.008282000000
................................................................................................................................AGATATGTTTGATATTCTT...........................................................................................................................19173.0073302511340
................................................................................................................................AGATATGTTTGATATTCTTGGC........................................................................................................................22168.006836400001
.........................................................................................................................................................................CCCAGGAATCAAACATATT..................................................................................19168.006800212630
................................................................................................................................AGATATGTTTGATATTCTTGGA........................................................................................................................22156.005655000001
..................................................................................................................................ATATGTTTGATATTCTTGGTTG......................................................................................................................22156.005651001040
................................................................................................................................AGATATGTTTGATATTCTTGGTA.......................................................................................................................23155.005546800001
................................................................................................................................AGATATGTTTGATATTCTTGT.........................................................................................................................21148.004835121180
................................................................................................................................AGATATGTTTGATATTCTTGGTTA......................................................................................................................24139.003933300102
...............................................................................................................................GAGATATGTTTGATATTCTTGGT........................................................................................................................23134.003460000028
...............................................................................................................................GAGATATGTTTGATATTCTTGGTT.......................................................................................................................24129.0029145000010
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA.............................................................................24129.002911001260
................................................................................................................................AGATATGTTTGATATTCTTGGTAA......................................................................................................................24128.002824000004
....................................................................................................................................ATGTTTGATATTCTTGGTT.......................................................................................................................19123.002316301120
..........................................................................................................................................................................CCAGGAATCAAACATATTATT...............................................................................21122.002240010170
......................................................................................................................................GTTTGATATTCTTGGTTG......................................................................................................................18121.00215005470
....................................................................................................................................ATGTTTGATATTCTTGGTTG......................................................................................................................20119.001914000230
..................................................................................................................................ATATGTTTGATATTCTTGGT........................................................................................................................20119.00199100090
..................................................................................................................................ATATGTTTGATATTCTTGGTT.......................................................................................................................21117.001716100000
...................................................................................................................................TATGTTTGATATTCTTGGTTG......................................................................................................................21116.00166000190
.................................................................................................................................GATATGTTTGATATTCTTGGTTGT.....................................................................................................................24115.001514000010
................................................................................................................................AGATATGTTTGATATTCT............................................................................................................................18115.00157100070
................................................................................................................................AGATATGTTTGATATTCTTGGTTGG.....................................................................................................................25114.001412000020
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTC..............................................................................23112.001200000120
..................................................................................................................................ATATGTTTGATATTCTTG..........................................................................................................................18112.00128010030
..........................................................................................................................................................................CCAGGAATCAAACATATTATTA..............................................................................22112.001210000110
................................................................................................................................AGATATGTTTGATATTCTTGGTTAA.....................................................................................................................25112.001212000000
....................................................................................................................................ATGTTTGATATTCTTGGT........................................................................................................................18110.00102100070
...............................................................................................................................GAGATATGTTTGATATTCTTGGTTG......................................................................................................................25110.001010000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGC.....................................................................................................................25110.00103600010
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTT..............................................................................23110.00101000090
..................................................................................................................................ATATGTTTGATATTCTTGG.........................................................................................................................1919.0099000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTAAA....................................................................................................................2619.0099000000
...................................................................................................................................TATGTTTGATATTCTTGGT........................................................................................................................1918.0080100160
................................................................................................................................AGATATGTTTGATATTCTTGGTTC......................................................................................................................2418.0087100000
.....................................................................................................................................TGTTTGATATTCTTGGTTG......................................................................................................................1918.0082011040
................................................................................................................................AGATATGTTTGATATTCTTGGTG.......................................................................................................................2318.0083400010
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAAA............................................................................2518.0080000080
.................................................................................................................................GATATGTTTGATATTCTTGGTTT......................................................................................................................2317.0077000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAA....................................................................................................................2617.0074000120
................................................................................................................................AGATATGTTTGATATTCTTT..........................................................................................................................2017.0073011020
...............................................................................................................................GAGATATGTTTGATATTCTTGG.........................................................................................................................2217.0077000000
.................................................................................................................................GATATGTTTGATATTCTT...........................................................................................................................1816.0066000000
.................................................................................................................................GATATGTTTGATATTCTTGGTTA......................................................................................................................2315.0055000000
...................................................................................................................................TATGTTTGATATTCTTGGTT.......................................................................................................................2015.0055000000
................................................................................................................................AGATATGTTTGATATTCTTGGTAAA.....................................................................................................................2515.0055000000
...........................................................................................................................................................................CAGGAATCAAACATATTATT...............................................................................2015.0051000040
................................................................................................................................AGATATGTTTGATATTCTTGC.........................................................................................................................2115.0053200000
.................................................................................................................................GATATGTTTGATATTCTTGGTTGA.....................................................................................................................2414.0044000000
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTT....................................................................................................................2613.0032100000
..................................................................................................................................ATATGTTTGATATTCTTGGTTGT.....................................................................................................................2313.0032000010
................................................................................................................................AGATATGTTTGATATTCTTGGAA.......................................................................................................................2313.0032100000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAT.............................................................................2413.0030000030
...........................................................................................................................................................................CAGGAATCAAACATATTATTA..............................................................................2113.0030000030
.................................................................................................................................GATATGTTTGATATTCTTGGA........................................................................................................................2113.0033000000
................................................................................................................................AGATATGTTTGATATTCTTGA.........................................................................................................................2113.0033000000
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTG..............................................................................2313.0030000030
................................................................................................................................AGATATGTTTGATATTCTTGGTAT......................................................................................................................2413.0033000000

Generated: 10/20/2015 at 07:02 PM