ID:

dmo_55

 Coordinate:

scaffold_6328:2900860-2900925 -

 Confidence:

Known Ortholog

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.4 -30.3 -30.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACATGAGTTAAACGAAATGAACCAGTTCGTTGTTCTGGCCCAGCCCGGTTCCGATTGCGCGGACATCTCATCGTCTGACCATTCGATAACCGATGAGATATTCACGTTATCGAGACTGCGACAGCGGCACTGACTTCAAATTTGTGCATGTGTCCTATGACTATCC

***********************************..(((..((.(((((.((((.(((.(((.(((((((((.................))))))))).))).))).)))).))))).....)))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total V110

male body		 M046

female body

 V056

head

 V049

head

 M060

embryo

 V041

embryo
.............................................................................................TGAGATGTTCACGTTATCGAGA................................................... 22 1 1 596.00 596 561 24 7 4 0 0
.............................................................................................TGAGATATTCACGTTATCGAGA................................................... 22 0 1 473.00 473 382 61 16 7 6 1
.............................................................................................TGAGATGTTCACGTTGTCGAGA................................................... 22 2 1 213.00 213 203 8 2 0 0 0
..................................................CCGATTGCGCGGACATCTCATC.............................................................................................. 22 0 1 99.00 99 81 14 0 2 2 0
..................................................CCGATTGCGCGGACATCTCAT............................................................................................... 21 0 1 46.00 46 36 7 2 0 1 0
..................................................CCGATTGCGCGGACATCTCA................................................................................................ 20 0 1 34.00 34 28 4 0 2 0 0
.............................................................................................TGAGATGTTCACGTTATCGAG.................................................... 21 1 1 30.00 30 29 1 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATCGAGAA.................................................. 23 2 1 22.00 22 22 0 0 0 0 0
.............................................................................................TGAGATATTCACGTTATCGAG.................................................... 21 0 1 22.00 22 11 7 0 0 4 0
.............................................................................................TGAGATATTCACGTTGTCGAGA................................................... 22 1 1 18.00 18 16 1 0 0 1 0
.............................................................................................TGAGATGTTCACGTTGTCGAG.................................................... 21 2 1 14.00 14 13 1 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATCGAGAAT................................................. 24 2 1 12.00 12 12 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATCGAGAT.................................................. 23 2 1 11.00 11 10 0 1 0 0 0
.............................................................................................TGAGATGTTCACGTTATCGAGT................................................... 22 2 1 8.00 8 8 0 0 0 0 0
.............................................................................................TGAGATATTCACGTTATCGAGAA.................................................. 23 1 1 6.00 6 4 1 1 0 0 0
..................................................CCGATTGCGCGGACATCTCATCG............................................................................................. 23 0 1 6.00 6 5 1 0 0 0 0
.............................................................................................TGAGATATTCACGTTATCGAGAAT................................................. 24 1 1 6.00 6 6 0 0 0 0 0
.............................................................................................TGAGATATTCACGTTATCGAGT................................................... 22 1 1 6.00 6 5 1 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATCGA..................................................... 20 1 1 6.00 6 4 2 0 0 0 0
.............................................................................................TGAGATGTTCACGTTGTCGAGAA.................................................. 23 3 1 6.00 6 6 0 0 0 0 0
.............................................................................................TGAGATGTTCGCGTTATCGAGA................................................... 22 2 1 4.00 4 4 0 0 0 0 0
..............................................................................................GAGATATTCACGTTATCGAGA................................................... 21 0 1 4.00 4 0 4 0 0 0 0
..................................................CCGATTGCGCGGACATCTCATT.............................................................................................. 22 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................TGAGATATTCACGTTATCGAGAT.................................................. 23 1 1 3.00 3 2 1 0 0 0 0
.............................................................................................TGAGATATTCACGTTATCGAGTCT................................................. 24 1 1 3.00 3 2 0 0 1 0 0
.............................................................................................TGAGATATTCACGTTATCGA..................................................... 20 0 1 3.00 3 3 0 0 0 0 0
..............................................................................................GAGATGTTCACGTTATCGAGA................................................... 21 1 1 3.00 3 1 2 0 0 0 0
.............................................................................................TGGGATGTTCACGTTATCGAGA................................................... 22 2 1 3.00 3 2 1 0 0 0 0
.............................................................................................TGAGATGTTCACGTTGTCGAGT................................................... 22 3 1 2.00 2 2 0 0 0 0 0
.............................................................................................TGAGATATTCAAGTTATCGAGA................................................... 22 1 1 2.00 2 1 1 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATCGAGATT................................................. 24 2 1 2.00 2 2 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTGTCGAGAT.................................................. 23 3 1 2.00 2 2 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTGTCGA..................................................... 20 2 2 2.00 4 4 0 0 0 0 0
.............................................................................................CGAGATGTTCACGTTATCGAGA................................................... 22 2 1 2.00 2 1 1 0 0 0 0
.............................................................................................TGAGATGTTCGCGTTGTCGAGA................................................... 22 3 1 2.00 2 2 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTGTCGAGAAT................................................. 24 3 1 2.00 2 2 0 0 0 0 0
............................................................................................ATGAGATATTCACGTTATCGAGA................................................... 23 0 1 2.00 2 1 1 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATCTAGA................................................... 22 2 1 2.00 2 2 0 0 0 0 0
.............................................................................................TGAGGTGTTCACGTTATCGAGA................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................CTGAGATGTTCACGTTATCGAGA................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATATTCACGTGATCGAGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................TGAGATATTCACGTTATCGATAAT................................................. 24 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTGTCGAGTC.................................................. 23 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATTGAGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCATGTTATCGAGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................CACATGAGATATTCACGTTATCGAGA................................................... 26 2 1 1.00 1 0 1 0 0 0 0
..............................................................................................GAGATGTTCACGTTGTCGAG.................................................... 20 2 1 1.00 1 0 1 0 0 0 0
............................................................................................ATGAGATGTTCACGTTATCGA..................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATCGAC.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................ATGAGATGTTCACGTTATCGAGT................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGACATATTCACGTTATCGAG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................CCGATTGCGCGGACATCTTC................................................................................................ 20 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTGTCGAGACT................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................CCGATTGCGCGTACATCTCATC.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................ATGGGATGATCACGTTATCGAG.................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCGCGTTGTCGAG.................................................... 21 3 1 1.00 1 0 0 1 0 0 0
.............................................................................................TGAGATGTTCACCTTATCGAGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................ATGAGATATTCACGTTATCGAGAT.................................................. 24 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATCGAGACT................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................CCGATTGCGCGAACATCTCATC.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATATTCACGTTATCGAGG................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CCGATTGCGCTGACATCTCATC.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATCGAGTT.................................................. 23 3 1 1.00 1 1 0 0 0 0 0
............................................................................................ATGAGATGTTCACGTTATCGAGTC.................................................. 24 2 1 1.00 1 1 0 0 0 0 0
............................................................................................ATGAGATGTTCACGTTGTCGAGC................................................... 23 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATATTCATGTTATCGAGA................................................... 22 1 1 1.00 1 0 0 1 0 0 0
.............................................................................................TGAGGTGTTCACGTTGTCGAGA................................................... 22 3 1 1.00 1 0 0 1 0 0 0
.............................................................................................TGAGATATTCACGTTATGGAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATTTTCACGTTATCGAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATCA...................................................... 19 2 1 1.00 1 1 0 0 0 0 0
..................................................CCGATTGCGCGGACATCTCATCC............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGCGATGTTCACGTTATCGAGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TTAGATGTTCACGTTGTCGAGA................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTGTCGAGC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGATATATTCACGTTATCGAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATATTCACGTTATCGAGATTT................................................ 25 2 1 1.00 1 1 0 0 0 0 0
...................................................CTATTGCGCGGACATCTCATC.............................................................................................. 21 1 1 1.00 1 0 0 0 0 1 0
.............................................................................................TGAGATGTTCACGTTGTCGAGATT................................................. 24 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATCGAGAAA................................................. 24 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTTACGTTGTCGAGA................................................... 22 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................AGATATTCACGTTATCGAGA................................................... 20 0 1 1.00 1 0 1 0 0 0 0
............................................................................................ATGAGATGTTCACGTTGTCGAGA................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................CCGATTGCGCGGTCATCTCATCG............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCACTTTATCGAGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATCCAG.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................ATGAGATGTTCACGTTACCGAGT................................................... 23 3 1 1.00 1 1 0 0 0 0 0
............................................................................................CTGAGATGTTCACGTTGTCGAGA................................................... 23 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATCGAGTC.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATGGAGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................CCGATTGCGCGGACATCTCAG............................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATATTCACGTTGACGAGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTTACGTTATCGAGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................CCGATTGCGCGGTCATCTCATC.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATATTCACGTTATTGA..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATCGAGAGT................................................. 24 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATATTCACGTTGTCGAG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATATTCACGTTATCGAGATT................................................. 24 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................TGAGATATTCACGTTATCGGG.................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATCGTC.................................................... 21 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCGCGTTATCGAGAT.................................................. 23 3 2 1.00 2 2 0 0 0 0 0
............................................................................................ATGAGATGTTCACGTTATCGAG.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCAAGTTATCGAGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................CCGATTGCGCGGACATCTCATG.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATCGTGT................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATCGAA.................................................... 21 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................TGAGATGTTCACGCTGTCGAGA................................................... 22 3 2 1.00 2 2 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATAGAGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATATTCACGTTATTGAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTATCGAGAC.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATATTCACGTTATCGAGC................................................... 22 1 1 1.00 1 0 0 0 0 1 0
.............................................................................................TTAGATATTCACGTTATCGAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................ATGAGATATTCACGTTATCGAGT................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................CCGATTGCACGGACATCTCAT............................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGAGATATTCACATTATCGAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CCGATTGCGCGGACATCTCATCT............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................TGGAGACTGCGACAGCGGCCC.................................... 21 2 1 1.00 1 0 0 0 1 0 0
...............................................................................................CTATATTCACGTTATCGAGA................................................... 20 2 2 0.50 1 0 0 0 0 1 0
.............................................................................................TGAGATGTTCACTTTGTCGAGA................................................... 22 3 2 0.50 1 1 0 0 0 0 0
.............................................................................................TGAGATGTTCACGTTGTCGACA................................................... 22 3 2 0.50 1 1 0 0 0 0 0
.............................................................................................................TGGAGACTGCGACAGCGGT...................................... 19 2 2 0.50 1 0 0 1 0 0 0
............................................................................................................ATCGAGCGTGCGACAGCGGCT..................................... 21 3 3 0.33 1 0 0 1 0 0 0
.............................................................................................................TTGAGAGTGCGACAGCGGC...................................... 19 2 4 0.25 1 0 0 1 0 0 0
.............................................................................................................TTGAGCCTGCGACAGCGGCTC.................................... 21 3 9 0.11 1 0 0 0 1 0 0
...............................GTTCTGGCCAAGCCGGGCTC................................................................................................................... 20 3 15 0.07 1 0 1 0 0 0 0

Anti-sense strand reads

TGTACTCAATTTGCTTTACTTGGTCAAGCAACAAGACCGGGTCGGGCCAAGGCTAACGCGCCTGTAGAGTAGCAGACTGGTAAGCTATTGGCTACTCTATAAGTGCAATAGCTCTGACGCTGTCGCCGTGACTGAAGTTTAAACACGTACACAGGATACTGATAGG

************************************..(((..((.(((((.((((.(((.(((.(((((((((.................))))))))).))).))).)))).))))).....)))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 M060

embryo

 V056

head

 V041

embryo

 V110

male body
...........................................................................................CTACTCTATAAGTGCAATAGCT..................................................... 22 0 1 12.00 12 7 1 2 1 1
.............................................................CTGTAGAGTAGCAGCCTGGC..................................................................................... 20 2 1 1.00 1 0 1 0 0 0
...........................................................................................CTACTCTATAAGTGCAATAGC...................................................... 21 0 1 1.00 1 1 0 0 0 0
...........................................................................................CTACTCTATAAGTGCGGTAGCT..................................................... 22 2 1 1.00 1 1 0 0 0 0
................................................................TAGAGTAGCAGACTGGTAAGCTATTGG........................................................................... 27 0 1 1.00 1 1 0 0 0 0
.................................................AGGCTAACGCGCCTGTAGAGT................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
...........................................................................................CTACTCTATAAGTGCAATTGCT..................................................... 22 1 1 1.00 1 0 1 0 0 0
................................................AAGGCTAACGCGCCTGTAGAGT................................................................................................ 22 0 1 1.00 1 0 0 1 0 0
...........................................................................................CTACTCTATAAGTGCAATAGCG..................................................... 22 1 1 1.00 1 1 0 0 0 0
............................................................................................TACTCTATAAGTGCAATAGCT..................................................... 21 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................TCCTACACAGCATACTGATA.. 20 3 3 0.33 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6328:2900810-2900975 - dmo_55 A-CATGAG----------------------T---------------------------------------------------------------------------------------------------------T--------------------------------------------AAACGA----A----------ATGAACC-----AGTTCGTTGTTCTGGCCCAGCCCGGTTCCGATTGCGCGGACATC-TCATCG---------TCT-GACCATTCGATAACCGATGAGATA-TTCACGTTATCGAGACTGCGACAGCGGCACTGACTTCAAATTTGTGCATGTGTCCTATGACTATCC
droVir3 scaffold_13042:906555-906725 - dvi-mir-977 G-GAATAG----------------------C---AACGGAAACAGGAACCGGAACAGAAACAGGAAAAAGAAATTGTGT---------------------------------------------------------------------------------------------------------------------------------TCC------------CCCTGGCCCAGCCCAGTTGCGATTGCGCGGACATC-TCATCG---------TAT-AAACATTCGATAACCAACGAGATA-TTCACGTTATCGAGACTGAGACGTCGGCAAAGACTGCAAGATTGTGC-------------------
droGri2 scaffold_15081:2044474-2044607 - dgr_22 A-CACAAA----------------------A---------------------------------------------------------------------------------------------------------C--------------------------------------------AACAAA----A---------------TCAAAGTACAACGGAAGTTTCGCCCAATCCCGTTACGATTTTGCGAAAGTC-TCATTG---------TAT-GACCATTTGATAACCAATGAGACG-TTCACATCTTCGAACCGGGCGTAACGGTAACGAC--------------------------------
droWil2 scf2_1100000004909:7956893-7957031 + dwi_60 T-TGTGCG----------------------T----------------------------------------------------------------------------GCAGTGTATTGTGATGTGACACCGTGGACGAT------------------------------------------------CAA------------CAAAATTCA---------------------TATACAATTTCAATAACGTAGATATC-GCATCGTTTTTTTTTACC---ATATTTGATAAGAGATGAGATA-TTCACGTTGTTGAAGTTGTGA---------------------------------------------
droAna3 scaffold_13417:2467464-2467562 - dan_36 G-AGGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---GCG------------TACCGCCGAGGTTCGGCCTCGATCACGAGAACGTC-GCATCT---------TAGT--TACATTTCCATATGATGAGATA-TTCACGTCGTCGAAACCGTG----------------------------------------------
droBip1 scf7180000395874:39829-39924 - C-CAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA------------TACCGCTGAGGTCCGGCCTCGATCACGAGAACGTC-GCATCT---------TAGT--TACGTTTTCATATGATGAGATA-TTCACGTCGTCGAAACCGTG----------------------------------------------
droKik1 scf7180000302517:1183785-1183942 + G-CTATCC--AG--------GTAAC---------CAGCTAAACA-------------------------------GCTACCCATCTACTCAGC-----------TCCTCTGGGAGTCGA----------------------------------------------------------------------------G---GCTCTAGATGCA------------AACCTCCATGGCACGGTCTGGATTACGAGAATATC-GCACCT---------TTG-ACGCCTTTGATATCTGGTGAGATA-TTCACGTGGTCGAGTCCGTG----------------------------------------------
droFic1 scf7180000454073:1734015-1734133 + T-TTTTCT--AA--------GT---------------------------------------------------------------------------------------------------------------------------------------------------------------G----------CCTAATTCCCGCAAGTCCA---------------ATCCAACATCCGATTTCGACCACGTGGGTATC-ACTCAC----CT---TTCCGCTCATTTGATATCGGGTGAGATA-TTCACGTCGTTGAATCCGTG----------------------------------------------
droEle1 scf7180000490751:1118889-1118989 + A-CAGATC-------------------------------------------------------------------GTGA-------------------------------------------------------T----------------------------------------------------C------------CATCCATTCCC---------------CTCCAAGGTATGGACTCGATCACGCGAGTATC-GCACCT---------TCCT--GCAATCGATAATCGGTGAGATA-TTCACGTCGTCGA-----------------------------------------------------
droRho1 scf7180000761121:189953-190090 - C-CAGATCCCAAATCTTAGA-----TCCCGACCC-------------------------------------------------------------------------------------------------------A-------------------------TCCA-----------------------CTGCCAGCATCATCCATTCCA---------------CACCAAGGTCTGGCCTCGATCACGCGAGTATC-GCACCT---------TCCT--GCAATCGATATTCGGTGAGATA-TTCACGTCGTCGAAGCCGTG----------------------------------------------
droBia1 scf7180000302069:1150857-1151023 - A-CATACG--------------------------------------------------------------------------------------------------------------------------GTGGGATCCCCAACGTCGCAGTGGGTCCTATGTTCCAGTACTAGTCCAGAC------C------------TACCCAATTCA---------------CACCAAGGCCTGGCCTCGATCACGCGGGTATC-GCATCT---------------GCAACTGATATCTGATGAGATA-TTCACGTCTTCGAAACCAAGC-------CTTGGCCACGAATTTG----------------------
droTak1 scf7180000415169:844668-844816 - A-GGTGAG----------------------A-------------------------------------------------------------------------TCTAATGGGTATCGTATT---------------G-------------------------TCTA----------------------ATTATTGAATCTTGCTAGTTAA---------------CCCCAAGGTCTGGCCTCGATCACGCGGATATC-GCATCT---------------GCAATTGATATCTGGTGAGATA-TTCACGTCGTCGAAACCATGC-------CTTGGCCTCGAATTT-----------------------
droEug1 scf7180000409230:879540-879660 - T-CTTTAT--A--------------TCCATATCC--------------------------------------------------------ATGTCCAGTGGAAATCTACAGGCCA---------------------------------------------------------------------------------------------CCA---------------ACCCAAGGTCTGGTCTCGATCACGCGGGTATCTGCATTT-------------GCATTTTGTATATCTGGTGAGATA-TTCACGTAGTCGA-----------------------------------------------------
dm3 chrX:19453031-19453141 + dme-mir-977 T-CGCGCC--------------------------------------------------------------------------------------------------------------------------GGGGAATCC------------------------------------------------CAACA--------CAACGAATCAA--------------CAAACAAGGTATGCTTTAGATAACTCGAATATC-ACATCT---------TCA---GTGTTCGAAATCTGATGAGATA-TTCACGTTGTCTAAA---------------------------------------------------
droSim2 x:18342638-18342761 + dsi-mir-977 TTCGCGCA--------------------------------------------------------------------------------------------------------------------------ATGGAATAC------------------------------------------------CAACTCCGGAGTGCCGAAAATGCA---------------TCCCAAGGTATGGTTTAGATAACTCGAATATC-ACATTT---------TCA---GTGTTCGATATCTGATGAGATA-TTCACGTTGTCTAAACCATG----------------------------------------------
droSec2 scaffold_8:1735341-1735463 + dse_82 T-CGCGCA--------------------------------------------------------------------------------------------------------------------------ATGGAATAC------------------------------------------------CAACTCCGGAGTGCCGAAAATTCA---------------TCCCAAGGTATGGTTTAGATAACTCGAATATC-ACATCT---------TCA---GTGTTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATG----------------------------------------------
droYak3 X:11885655-11885775 - dya_61 A-TTCGGA----------------------ATCA-------------------------------------------------------------------------------------------------------AC------------------------------------------------CAAGTGCGGACAGCTCAGAGTTCA---------------CCCCAAGGTATGGCCTAGATAACACGGGTATC-ACATCT---------TTAT--GCATTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATG----------------------------------------------
droEre2 scaffold_4690:9689051-9689162 + T-CTTGTC--AA--------AC---------------------------------------------------------------------------------------------------------------------------------------------------------------AAACGA----G----------CAGAATTCA---------------ACCCAAGGTATGGCCTAGATAACTCGGGTATC-ACATCT---------TTAT--GCATTCGATATCTGGTGAGATAATTCACGTTGTCTAAACCATG----------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
A-CATGAG----------------------T---------------------------------------------------------------------------------------------------------T--------------------------------------------AAACGA----A----------ATGAACC-----AGTTCGTTGTTCTGGCCCAGCCCGGTTCCGATTGCGCGGACATC-TCATCG---------TCT-GACCATTCGATAACCGATGAGATA-TTCACGTTATCGAGACTGCGACAGCGGCACTGACTTCAAATTTGTGCATGTGTCCTATGACTATCCSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGA...................................................221473.004736117166382
.................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TCATC.........................................................................................................22199.009914020281
.................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TCAT..........................................................................................................21146.00467002136
.................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TCA...........................................................................................................20134.00344020028
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAG....................................................21122.00227000411
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGAA..................................................2316.006100104
.................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TCATCG---------...............................................................................................2316.006100005
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGT...................................................2216.006100005
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAGA...................................................2114.004400000
.................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TCATT.........................................................................................................2214.004000004
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGAT..................................................2313.003100002
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGA.....................................................2013.003000003
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTATCGAGA...................................................2312.002100001
.................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TTC...........................................................................................................2011.001000001
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTATCGAGAT..................................................2411.001100000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGG...................................................2211.001000001
.................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TCATCC---------...............................................................................................2311.001000001
.........................................................................................................................................................................................................................................................................................................AGATA-TTCACGTTATCGAGA...................................................2011.001100000
.................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TCAG..........................................................................................................2111.001000001
.................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TCATG.........................................................................................................2211.001000001
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGC...................................................2211.001000010
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTATCGAGT...................................................2311.001000001
.................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TCATCT---------...............................................................................................2311.001000001
droVir3
G-GAATAG----------------------C---AACGGAAACAGGAACCGGAACAGAAACAGGAAAAAGAAATTGTGT---------------------------------------------------------------------------------------------------------------------------------TCC------------CCCTGGCCCAGCCCAGTTGCGATTGCGCGGACATC-TCATCG---------TAT-AAACATTCGATAACCAACGAGATA-TTCACGTTATCGAGACTGAGACGTCGGCAAAGACTGCAAGATTGTGC-------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGA...................................................22117315.0017315150290246478601981000301170451100129755593811144743112271020245410000000000000100030105507200081100100000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAG....................................................21115065.001506510190864636506400003000406211016344376731521149399534810011010310000000000000000030012301000020000200000
.................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATC.........................................................................................................221957.0095740700221206000000000054000000022120811723404300000250000000000000000000001000020010000000000
.................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCAT..........................................................................................................211582.0058200000611000000000000270000000140130571790210000017000000000000000000000100010000000010000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGT...................................................221582.00582000004201209000000000052000000010795411370300000053000000000000000000000400000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGA.....................................................201542.00542101002313050000000000120000000127125531260211000043000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCG......................................................191453.00453002004103080000000000380000010707624800500000059000000000000000000000100000000000000000
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAGA...................................................211140.0014000200001000000000000500000003735193403000004000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCA...........................................................................................................201124.001240000010000000000000070000000333083107000006000000000000000000000000000000000000100
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAT..................................................231115.001150000030100000000000060000000332073801000006000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAG....................................................201111.0011100000800000000000000500000002925122206000003000000000000000001000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAA..................................................231102.001021010050103000001001020000000241692501000004000000000000000000000004010011100000000
.................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATCG---------...............................................................................................231100.0010010000401070000000000110000000181962205000003000000000000000000000300000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGC...................................................22157.0057000009000100000000001400000008434040000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAC....................................................21134.00340000000000000000000080000000744603000002000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATCG---------TA.............................................................................................25132.00320000000001000000000000000000883604000001000000000000000000000100000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGATC.................................................24127.002700000000000000000000100000005331203000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATC.......................................................18125.00250000040001000000000000000000610600000007000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................ACGAGATA-TTCACGTTATCGAGA...................................................23118.00180010000100000000000000000000522601000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................ATA-TTCACGTTATCGAGACTGA...............................................22117.00172000000000000000000010000000330301000003000000000000000000000100000000000000000
.................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATT.........................................................................................................22117.00170000010000000000000000000000263301000000000000000000000000000000000010000000000
......................................................................................................................................................................................................................................................................................................ACGAGATA-TTCACGTTATCGAG....................................................22117.00170000020001000000000000000000324500000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAT....................................................21116.00160000000000000000000060000000120303000001000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATCT---------...............................................................................................23114.00140000000000000000000000000000353101000000000000000000000000000000000100000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAC..................................................23112.00120000010000000000000030000000131300000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAAA.................................................24112.00120000000000000000000000000000430310010000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAA....................................................21111.00110000010000000000000030000000230101000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGTTC.................................................24110.00100000000000000000000020000000041300000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCC......................................................1919.0090000000000000000000000000000411200000001000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGG...................................................2218.0082000000000000000000000000000011200000002000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGTC....................................................2118.0080000010000000000000010000000010201000002000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................GATA-TTCACGTTATCGAGA...................................................1916.0060000000000000000000000000000220200000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAG..................................................2316.0060000000000000000000020000000010100000001000000000000000000000100000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGTT..................................................2315.0050000000000000000000000000000012002000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................AGATA-TTCACGTTATCGAGA...................................................2014.0040000020000000000000000000000110000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC............................................................................................................1914.0040000010100000000000000000000000002000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................ATA-TTCACGTTATCGAGA...................................................1814.0040000000000000000000000000000101100000001000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGC.....................................................2013.0030000010000000000000010000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................ACGAGATA-TTCACGTTATCG......................................................2013.0030000000000000000000010000000101000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATCC---------...............................................................................................2313.0030000000000000000000000000000110100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATCG---------TC.............................................................................................2513.0030000010000000000000000000000110000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................GATTGCGCGGACATC-TCATC.........................................................................................................2013.0030000000000000000000000000000010200000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGATCT................................................2513.0030000000000000000000000000000000300000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................GATTGCGCGGACATC-TCAT..........................................................................................................1913.0030000000000000000000000000000100200000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TTC...........................................................................................................2013.0030000020000000000000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................ACGAGATA-TTCACGTTATCGA.....................................................2113.0030000000000000000000000000000200100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCC...........................................................................................................2012.0020000000000000000000010000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAGT...................................................2112.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATTT---------...............................................................................................2312.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGACC.................................................2412.0022000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGACC...................................................2212.0020000000000000000000020000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATCG---------T..............................................................................................2412.0020000000000000000000000000000020000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATCA---------...............................................................................................2312.0020000000000000000000000000000100001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGA.....................................................1912.0020000000000000000000000000000200000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAAG.................................................2412.0020000010000000000000000000000100000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATA.........................................................................................................2212.0020000000000000000000000000000110000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................CGATTGCGCGGACATC-TCAT..........................................................................................................2012.0020000000000000000000000000000010000000001000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAGATC.................................................2312.0020000000000000000000000000000000200000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TGCGATTGCGCGGACATC-TCA...........................................................................................................2112.0020000000000000000000000000000010100000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGCT....................................................2122.0040000000000000000000030000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................GATA-TTCACGTTATCGAG....................................................1812.0020000000000000000000000000000000200000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAT....................................................2011.0010000000000000000000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCAG.....................................................2011.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGATC...................................................2211.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TT............................................................................................................1911.0010000000001000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCAA..........................................................................................................2111.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGATG...................................................2211.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TTGCGATTGCGCGGACATC-TC............................................................................................................2111.0010000000000000000000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCCC.....................................................2011.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAGAT..................................................2211.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................C------------CCCTGGCCCAGCCCAGTT................................................................................................................................1911.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCG......................................................1811.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TTGCGATTGCGCGGACATC-TCA...........................................................................................................2211.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................GATA-TTCACGTTATCGAGACGA................................................2211.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TGCGATTGCGCGGACATC-TCATC.........................................................................................................2311.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................AGATA-TTCACGTTATCGAG....................................................1911.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
droGri2
A-CACAAA----------------------A---------------------------------------------------------------------------------------------------------C--------------------------------------------AACAAA----A---------------TCAAAGTACAACGGAAGTTTCGCCCAATCCCGTTACGATTTTGCGAAAGTC-TCATTG---------TAT-GACCATTTGATAACCAATGAGACG-TTCACATCTTCGAACCGGGCGTAACGGTAACGAC--------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.......................................................................................................................................................................................................................................................................................................TGAGACG-TTCACATCTTCGAAC...................................................2217.00716
.......................................................................................................................................................................................................................................................................................................TGAGACG-TTCACATCTTCGA.....................................................2013.00303
.................................................................................................................................................................................................................................................ACGATTTTGCGAAAGTC-TCATT.........................................................................................................2212.00211
.......................................................................................................................................................................................................................................................................................................TGAGACG-TTCACATCTTCGAA....................................................2112.00202
.................................................................................................................................................................................................................................................ACGATTTTGCGAAAGTC-TCAT..........................................................................................................2112.00202
.......................................................................................................................................................................................................................................................................................................TGAGACG-TTCACATCTTCGAACC..................................................2311.00101
................................................................................................................................................................................................................................................TACGATTTTGCGAAAGTC-TCAT..........................................................................................................2211.00110
.......................................................................................................................................................................................................................................................................................................TGAGACG-TTCACATCTTCGAACT..................................................2311.00101
.................................................................................................................................................................................................................................................ACGATTTTGCGAAAGTC-TCA...........................................................................................................2011.00101
droWil2
T-TGTGCG----------------------T----------------------------------------------------------------------------GCAGTGTATTGTGATGTGACACCGTGGACGAT------------------------------------------------CAA------------CAAAATTCA---------------------TATACAATTTCAATAACGTAGATATC-GCATCGTTTTTTTTTACC---ATATTTGATAAGAGATGAGATA-TTCACGTTGTTGAAGTTGTGA---------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAG...................................................221330.003301102862112
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGA.....................................................201264.002641025715
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAA....................................................211129.001290112134
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAGT..................................................23179.00793064210
.................................................................................................................................................................................................................................................TCAATAACGTAGATATC-GCATC.........................................................................................................22118.001870920
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAA...................................................22117.0017001700
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAGA..................................................2319.00901710
.................................................................................................................................................................................................................................................TCAATAACGTAGATATC-GCAT..........................................................................................................2116.00630300
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTG......................................................1915.00500401
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAT....................................................2115.00500500
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAT...................................................2214.00400400
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAGTT.................................................2413.00300300
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTTGA.....................................................1913.00300300
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTTGAAG...................................................2112.00200200
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGG.....................................................2011.00100100
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAAA..................................................2311.00100100
...................................................................................................................................................................................................................................................AATAACGTAGATATC-GCATC.........................................................................................................2011.00100100
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGT.....................................................2011.00100100
..................................................................................................................................................................................................................................................................................................AGAGATGAGATA-TTCACGTTGT........................................................2211.00100100
.................................................................................................................................................................................................................................................TCAATAACGTAGATATC-GCAG..........................................................................................................2111.00110000
droAna3
G-AGGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---GCG------------TACCGCCGAGGTTCGGCCTCGATCACGAGAACGTC-GCATCT---------TAGT--TACATTTCCATATGATGAGATA-TTCACGTCGTCGAAACCGTG----------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAA....................................................211226.002262900161738
.................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GCATCT---------...............................................................................................231179.00179152091449
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGA.....................................................201136.0013633009913
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAA...................................................221134.00134270041021
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAA....................................................22149.00492003440
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGA.....................................................21133.00333000291
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAT...................................................22132.00323001253
.................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GCAT..........................................................................................................21130.00303105210
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAA...................................................23123.00233002162
.................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GCATC.........................................................................................................22120.00205100140
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCG......................................................19112.0012200280
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAT...................................................23111.0011100271
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCG......................................................20110.00100000100
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAATT..................................................2318.008000080
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTCGTCGAAA...................................................2116.006600000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAAT..................................................2315.005000041
.................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GCA...........................................................................................................2015.005000050
.........................................................................................................................................................................................................................................................................................................AGATA-TTCACGTCGTCGAA....................................................1913.003300000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAT....................................................2113.003000120
.................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GCATCT---------TT.............................................................................................2513.003000111
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTCGTCGAA....................................................2012.002200000
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAATT..................................................2412.002000020
.................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GCAA..........................................................................................................2112.002000020
.................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GCATCT---------T..............................................................................................2412.002000020
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGATT...................................................2212.002000020
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAATTT.................................................2412.002000110
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAC....................................................2112.002000020
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGT.....................................................2012.002000110
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAG....................................................2111.001000010
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGT.....................................................2111.001000100
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAACT.................................................2511.001000010
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGATT...................................................2311.001000010
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAATTT.................................................2511.001000010
.................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GCATCT---------C..............................................................................................2411.001100000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAATT.................................................2411.001000010
................................................................................................................................................................................................................................................CTCGATCACGAGAACGTC-GCATCT---------...............................................................................................2411.001000010
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAAT..................................................2411.001000010
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGTTT...................................................2221.002000020
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAG...................................................2211.001000010
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAG....................................................2211.001000010
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAGTT..................................................2311.001000010
.................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GCT...........................................................................................................2011.001100000
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAT....................................................2211.001000010
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTCGTCGT.....................................................1920.501100000
droBip1
C-CAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA------------TACCGCTGAGGTCCGGCCTCGATCACGAGAACGTC-GCATCT---------TAGT--TACGTTTTCATATGATGAGATA-TTCACGTCGTCGAAACCGTG----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
G-CTATCC--AG--------GTAAC---------CAGCTAAACA-------------------------------GCTACCCATCTACTCAGC-----------TCCTCTGGGAGTCGA----------------------------------------------------------------------------G---GCTCTAGATGCA------------AACCTCCATGGCACGGTCTGGATTACGAGAATATC-GCACCT---------TTG-ACGCCTTTGATATCTGGTGAGATA-TTCACGTGGTCGAGTCCGTG----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
T-TTTTCT--AA--------GT---------------------------------------------------------------------------------------------------------------------------------------------------------------G----------CCTAATTCCCGCAAGTCCA---------------ATCCAACATCCGATTTCGACCACGTGGGTATC-ACTCAC----CT---TTCCGCTCATTTGATATCGGGTGAGATA-TTCACGTCGTTGAATCCGTG----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
A-CAGATC-------------------------------------------------------------------GTGA-------------------------------------------------------T----------------------------------------------------C------------CATCCATTCCC---------------CTCCAAGGTATGGACTCGATCACGCGAGTATC-GCACCT---------TCCT--GCAATCGATAATCGGTGAGATA-TTCACGTCGTCGA-----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
C-CAGATCCCAAATCTTAGA-----TCCCGACCC-------------------------------------------------------------------------------------------------------A-------------------------TCCA-----------------------CTGCCAGCATCATCCATTCCA---------------CACCAAGGTCTGGCCTCGATCACGCGAGTATC-GCACCT---------TCCT--GCAATCGATATTCGGTGAGATA-TTCACGTCGTCGAAGCCGTG----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
A-CATACG--------------------------------------------------------------------------------------------------------------------------GTGGGATCCCCAACGTCGCAGTGGGTCCTATGTTCCAGTACTAGTCCAGAC------C------------TACCCAATTCA---------------CACCAAGGCCTGGCCTCGATCACGCGGGTATC-GCATCT---------------GCAACTGATATCTGATGAGATA-TTCACGTCTTCGAAACCAAGC-------CTTGGCCACGAATTTG----------------------SizeHit CountTotal NormTotal
No Reads
droTak1
A-GGTGAG----------------------A-------------------------------------------------------------------------TCTAATGGGTATCGTATT---------------G-------------------------TCTA----------------------ATTATTGAATCTTGCTAGTTAA---------------CCCCAAGGTCTGGCCTCGATCACGCGGATATC-GCATCT---------------GCAATTGATATCTGGTGAGATA-TTCACGTCGTCGAAACCATGC-------CTTGGCCTCGAATTT-----------------------SizeHit CountTotal NormTotal
No Reads
droEug1
T-CTTTAT--A--------------TCCATATCC--------------------------------------------------------ATGTCCAGTGGAAATCTACAGGCCA---------------------------------------------------------------------------------------------CCA---------------ACCCAAGGTCTGGTCTCGATCACGCGGGTATCTGCATTT-------------GCATTTTGTATATCTGGTGAGATA-TTCACGTAGTCGA-----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
T-CGCGCC--------------------------------------------------------------------------------------------------------------------------GGGGAATCC------------------------------------------------CAACA--------CAACGAATCAA--------------CAAACAAGGTATGCTTTAGATAACTCGAATATC-ACATCT---------TCA---GTGTTCGAAATCTGATGAGATA-TTCACGTTGTCTAAA---------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCT......................................................19158925.00589250000000000000000000000054000000000001010150114000010000000000000000000000000001000000000922502432411100210100031451411531022002000000010000000000000000000000010000000000000000120000080201050000001306235900001750362000000000000000001311210000000030020000100150100905039461212421150310813557521711411147110000047207320141401160202000051049532000091309910100020201777435935101514532813680
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA---------------------------------------------------22119962.0019962000007002365310000000000281100020000000000011001101010010000000000000000000000001100060142201320534133736432350204903042206172313212148130000000000000120000000000001000010025000000000000000520402140220205200000352208740000440082840000013000004000725000205931502000200000010000031008002000000201194161111112218231433017302011333269010140013208811700050269387500051360161711230009580250
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA....................................................21115814.001581400001200011412960000000000319100000000000000003010000000100000000000000000000000000010149318001742714873150410141008836210431186109646102134374659131754100000010000000000000000000000000005001000000000000150200111020101000000353076280000451054400000000000000000112000001100121000000000000000126006001000002003320110710301004000301081010002264201000007204264000102432213100001405043011000525060
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA.....................................................2018506.0085060000020000010000000000001772000000000010000000000000011000000000000000000000000000000303010136114101383418900061429101417102615281486000000000000100000000000000000000040000000000000001502010140201010000002305031200002660206000000000000000001312000000100000000000001000010006002020100000191131720201000000000010010000202302000003803238010000027203000101704123021000659280
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATC.........................................................................................................2211778.001778000000000003000000000001020000000000000000000000000201000000000000000000000000010000010000001002900700321100116701500000000000000001000000000000000000000300000000000000000010008020003000010021708700001310370000000000000000034002741794251000100000000000009000000100000010414351000101600010106002000020300000006013000000027000000010000010000235160
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACAT..........................................................................................................211658.0065800000000000200000000000660000000000000000000000000000000000000000000000000000010000000000000001000160000040024420900080000000000000000000000000000000000000000000000000010000004000000000000080110000043060000000000000000012000316400800050000000000000200100000000000010173000000000000000010000000000000000200000000106100000000003000000110000
........................................................................................................................................................................................................................................................................T---------TCA---GTGTTCGAAATCTGA..........................................................................191454.0045400000000000000000000000100000000000000001000000000000000000000000000000000000000100000000010019019000000001003010010400000000000000000000000000000000006000000000000000010000010000000000000000000000000000000000000000100000000000000100000000000001000000000010000101571000000000000002001000001400000003014000000011300000010000000000101000
................................................................................................................................................................................................................CAA--------------CAAACAAGGTATGCTT................................................................................................................................191324.0032400000000000000000000000480000000000001000000000000000000000000000000000000000000000000000000002100000000001000000000000000000000000000000000000000001010000000000000000000000000000000000001201300001101100000000000000000001000000000000000000000000001001010000000000108600100000000000010010000201000000030210001000900010001010100000023010
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCT......................................................201242.002420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000002020000103000000000000000000000000000010000000000000000000000010010000000015000000000000000100000000000000000000100000009300001000010001000116010
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACA...........................................................................................................201162.00162000000000002100000000006000000000000000000000000000000000000000000000000000000000000000000000100100001020001206000110000000000000000000000000000000000000000000000000001000000000000000000001202000080000000000000000000010000000001000000000000000000000000000000000005400000000000000000000000000000000010000000000100000000000100000028000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAT....................................................211161.0016100000000000200000000000470000000000000000000000000000000000000000000000000000000000000000000002003000010000101000000000000000000010000000000000000000000000000000000000000000100000000000013090000801300000000000000000000100000000000000000000000001000000000000000001200000000000000000000000000000000000110000000370000002000000000012010
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTC.......................................................18188.00880000000000000000000000010000000000000000000010000000000000000000000000000000000000000000100000100000000000000001000000000000000000000000000000000000000000000000000000030000000000000000000102000040200000000000000000000000000000000000000000000000000000000000000202900000000000000000000000001010000010000000010100000000010000000016000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCC......................................................19187.00870000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080010000000000000000000000000000000000000000000000000000000000076000
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAAA---------------------------------------------------21167.006700000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000030000000000000000000000000000100000000000000000000000000000001000140000000000000000000000000000000000000000000035000000000000000005000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAT---------------------------------------------------22164.006400000000000100000000000170000000000000000000000000000000000000000000000000000000001000000001000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000002000000010000000000000000100000000000000000000000000000000000000080000000000000000000000000000000000000000000023000000000010000005000
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTA.....................................................21160.006000000000000000000000000900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030400001020000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000100000000001000000027000000000000000001000
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCT......................................................18160.00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000030000003000100000045000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAC---------------------------------------------------22156.005600000000000000000000000100000000000000000000000000010000000000000000000000000000000000000000001001000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000010000003000000000000000000000000000020000000000000000000000000000000000070000000000000000000000000100000003001000000014000100000000000009000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAC....................................................21151.00510000000000010000000000090000000000000000000000000000000000000000000000000000000000000000000001400100000100000000000001000000000000000000000000000000000000000000000000000000000000000000000101000010200000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000200300000007000000000000000003000
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAA....................................................22133.00330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002000000000000020000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000100019000000000000000001000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAG....................................................21126.00260000000000030000000000010000000000000000000000000000000000000000000000000000000000000000000200000000000200000000000200000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000000000000000000000002000000000000000010000000000000000000000000001000000000000000000000
...............................................................................................................................................................................................................TCAA--------------CAAACAAGGTATGCTT................................................................................................................................20126.00260000000000010000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000100000000000000000011000000000000000000000
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAA....................................................20125.0025000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000300200000000000001000000000000000000000000000000000000000000000000000000000000000000000000000102000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000100000000002000
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAA---------------------------------------------------23124.00240000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000003000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000100000000000000000010000000000000000002000
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTA.....................................................19122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000105000000000000000000000000000000000000100000007000000000000000002000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAG---------------------------------------------------22121.0021000010000001000000000006000000000000000000000000000000000000000000000000000000000000000000000100000010000000002000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000002000
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATCT---------TC.............................................................................................25117.0017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000020000000000000000000000000000001000000000000100001000000000000000004000000000000000000000001000000000000000000002000000000000000003000
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATCT---------...............................................................................................23116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000030000000000000000000000001000000000000000000000001000000000000000005000000000000000000000000000000000000000000002000000000000000003000
........................................................................................................................................................................................................................................................................T---------TCA---GTGTTCGAAATCTG...........................................................................18115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000003000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTG.....................................................20115.0015000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000004000000000000000001000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCA......................................................19114.0014000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000001000000000000000007000
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC............................................................................................................19114.0014000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000108000000000000000000000000000000000000000000000000000000000000002000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTATC---------------------------------------------------22113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTC.....................................................20111.0011000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000100000000002000000000000000000000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTT.....................................................20111.0011000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000003000000000000000002000
.................................................................................................................................................................................................................AA--------------CAAACAAGGTATGCTT................................................................................................................................18111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000100000000000000100000000002000000000010000000000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCG......................................................19110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000100100000000000000000000000003000
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATCT---------T..............................................................................................24110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000010100000000000000000000000001000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000002000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTTT....................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000003000
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATCA---------...............................................................................................2317.007000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
...........................................................................................................................................................................................................................................................................................................ATA-TTCACGTTGTCTAAA---------------------------------------------------1816.006000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000002000000000000000000000
..............................................................................................................................................................................................................ATCAA--------------CAAACAAGGTATGCTT................................................................................................................................2115.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000003000000000000000001000
.........................................................................................................................................................................................................................................................................................................AGATA-TTCACGTTGTCTAA....................................................1914.004000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATT.........................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................T---------TCA---GTGTTCGAAATCTGATC........................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTCC....................................................2114.004000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000200000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTATT---------------------------------------------------2214.004000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000002000000000000000000000
droSim2
TTCGCGCA--------------------------------------------------------------------------------------------------------------------------ATGGAATAC------------------------------------------------CAACTCCGGAGTGCCGAAAATGCA---------------TCCCAAGGTATGGTTTAGATAACTCGAATATC-ACATTT---------TCA---GTGTTCGATATCTGATGAGATA-TTCACGTTGTCTAAACCATG----------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA....................................................2112553.00255302011954311222100557000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA.....................................................201577.00577010039281421100167000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTC.......................................................181295.002950000291300000001000
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAA....................................................221275.002750130018111200310064000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCT......................................................191218.0021800001684200020042000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA...................................................221217.00217070123028141823100102000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAC..................................................231183.001830000179400000000000
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTA.....................................................211110.0011011700622200000026000
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATT.........................................................................................................22154.00540160032001010004000
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAA...................................................23140.0040020010727110019000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAA..................................................23133.0033000000231460008000
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCT......................................................20132.0032070020001000004000
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTC.......................................................19130.0030000029000000001000
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACAT..........................................................................................................21128.0028000025000000003000
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACA...........................................................................................................20128.0028000027000000001000
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATTT---------T..............................................................................................24124.0024018000000110004000
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATTT---------...............................................................................................23117.0017030010101000002000
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAA....................................................20116.0016000016000000000000
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGT........................................................18115.0015000015000000000000
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATTT---------TC.............................................................................................25113.001304007010000001000
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC............................................................................................................19113.0013000013000000000000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAT....................................................21111.0011000000000000011000
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTA.....................................................1916.00600014000000001000
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAAC..................................................2415.00500005000000000000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTT.....................................................2015.00500000000000005000
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-A.............................................................................................................1814.00400004000000000000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCA......................................................1913.00300000000000003000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAAA.................................................2413.00300000000000003000
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTT.....................................................2112.00200000000000002000
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAAAC..................................................2212.00200002000000000000
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCT......................................................1812.00200002000000000000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAT...................................................2212.00200000000000002000
...............................................................................................................................................................................................................TGCA---------------TCCCAAGGTATGGTT................................................................................................................................1912.00200002000000000000
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCC......................................................2012.00202000000000000000
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAAA..................................................2412.00200000000010001000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAACC.................................................2412.00200002000000000000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTTT....................................................2111.00100000000000001000
........................................................................................................................................................................................................................................................................T---------TCA---GTGTTCGATATCTGA..........................................................................1911.00100000000000001000
...................................................................................................................................TGGAATAC------------------------------------------------CAACTCCGGAGTG.........................................................................................................................................................................2111.00100000010000000000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAACA..................................................2311.00100000000000001000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAG...................................................2211.00101000000000000000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAG....................................................2111.00100000000000001000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTT..........................................................1511.00100000000001000000
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCG......................................................2011.00101000000000000000
......................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTA.......................................................1911.00100000000000001000
droSec2
T-CGCGCA--------------------------------------------------------------------------------------------------------------------------ATGGAATAC------------------------------------------------CAACTCCGGAGTGCCGAAAATTCA---------------TCCCAAGGTATGGTTTAGATAACTCGAATATC-ACATCT---------TCA---GTGTTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATG----------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA...................................................221107.0010739662
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCT......................................................19182.00822151451
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA.....................................................20137.003703601
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA....................................................21133.003313002
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATC.........................................................................................................2218.0081601
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAA..................................................2315.0051301
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACAT..........................................................................................................2113.0030210
.................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACA...........................................................................................................2013.0031101
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAT....................................................2112.0020200
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAAA...................................................2111.0011000
........................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTA.....................................................1911.0011000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTTT....................................................2111.0010100
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAT...................................................2211.0010100
droYak3
A-TTCGGA----------------------ATCA-------------------------------------------------------------------------------------------------------AC------------------------------------------------CAAGTGCGGACAGCTCAGAGTTCA---------------CCCCAAGGTATGGCCTAGATAACACGGGTATC-ACATCT---------TTAT--GCATTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATG----------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA...................................................22150.0050140001440000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCT......................................................19124.0024010026150000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA.....................................................20117.0017010000160000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA....................................................21116.0016000001150000
.................................................................................................................................................................................................................................................TAGATAACACGGGTATC-ACAT..........................................................................................................2115.00501000030010
.................................................................................................................................................................................................................................................TAGATAACACGGGTATC-ACATC.........................................................................................................2215.00512100010000
................................................................................................................................................................................................................................................CTAGATAACACGGGTATC-ACAT..........................................................................................................2212.00200000020000
.................................................................................................................................................................................................................................................TAGATAACACGGGTATC-ACA...........................................................................................................2012.00200001010000
................................................................................................................................................................................................................................................CTAGATAACACGGGTATC-ACA...........................................................................................................2112.00200000110000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAC..................................................2311.00110000000000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAT....................................................2111.00100000010000
.......................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAC....................................................2111.00100000010000
droEre2
T-CTTGTC--AA--------AC---------------------------------------------------------------------------------------------------------------------------------------------------------------AAACGA----G----------CAGAATTCA---------------ACCCAAGGTATGGCCTAGATAACTCGGGTATC-ACATCT---------TTAT--GCATTCGATATCTGGTGAGATAATTCACGTTGTCTAAACCATG----------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.................................................................................................................................................................................................................................................TAGATAACTCGGGTATC-ACAT..........................................................................................................2118.0080020510
.................................................................................................................................................................................................................................................TAGATAACTCGGGTATC-ACA...........................................................................................................2017.0070000610
.......................................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGTCTA.....................................................2116.0060000510
.......................................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGTCT......................................................2014.0040000220
...............................................................................................................................................................................................................TTCA---------------ACCCAAGGTATGGCC................................................................................................................................1912.0020000110
.......................................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGTC.......................................................1911.0010000100
.................................................................................................................................................................................................................................................TAGATAACTCGGGTATC-ACATCT---------...............................................................................................2311.0010000100
.......................................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGTCTAAA...................................................2311.0010000010
.......................................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGT........................................................1811.0010000010
..............................................................................................................................................................................................................ATTCA---------------ACCCAAGGTATGGCC................................................................................................................................2011.0010000100
.................................................................................................................................................................................................................................................TAGATAACTCGGGTATC-ACATC.........................................................................................................2211.0010000010

Generated: 09/08/2015 at 08:02 PM