ID:

dmo_546

 Coordinate:

scaffold_6359:1013238-1013388 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.1 -28.6 -28.5

Flybase annnotation

exon [dmoj_GLEANR_6654:10]; CDS [Dmoj\GI21662-cds]; intron [Dmoj\GI21662-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+
(CAA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCAGCAACAACAACAACAGCAGCAACAACAACAACAACAACAACAACATAGTGTACAGCAGCCAGCAGCAACAACAACAGCTACAGCTACTACTACAACAACAACAAACATTTGCACTAGCACTCAATCAGACACAGACACTGATGATGAGGATGGTGATGGTATTGATAAGAGTCCGCTTTTAGGTTTGTACCATAAACAACAAAAACAACAACAACAACAACAACACAAACTGCACCCACCCAAAAACA
**************************************************.((((.((.(((.(((.............)))...))).))..)))).................(((((...(((((((((.........)))))..))))..)))))(((((((...((((((....)))))).....))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 M060
embryo
 M046
female body
 V049
head
............................................................................................................................................................TGATGGTATTGATAAGAGTCCGCTTT..................................................................... 26 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................GATGGTATTGATAAGAGTCCGCT....................................................................... 23 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................................AACAACAAAAACCGCACCCACC........ 22 2 2 0.50 1 0 1 0 0
...GCAACAACAACAACAGCAGCAAC................................................................................................................................................................................................................................. 23 0 20 0.10 2 0 0 2 0
.......................AACAACAACAACAACAACAAC............................................................................................................................................................................................................... 21 0 20 0.10 2 0 0 2 0
......................................................................................................................................................................TATCAGAGTCAGCTTTTAGGT................................................................ 21 3 12 0.08 1 0 0 0 1
.................................................................................................................................................................................................................AACAACAACAACAACAACACAAAC.................. 24 0 12 0.08 1 0 0 1 0
...............................................................................................................................TCAGACACTGACACCGATGAA....................................................................................................... 21 3 14 0.07 1 0 1 0 0
.......CAACAACAACAGCAGCAACAACA............................................................................................................................................................................................................................. 23 0 20 0.05 1 0 0 1 0
........AACAACAACAGCAGCAACAA............................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 1 0
........AACAACAACAGCAGCAACAACAACAACA....................................................................................................................................................................................................................... 28 0 20 0.05 1 0 0 1 0
............ACAACAGCAGCAACAACAAC........................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 1 0
...............ACAGCAGCAACAACAACAACAAC..................................................................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0
..AGCAACAACAACAACAGCAGCAACAACA............................................................................................................................................................................................................................. 28 0 20 0.05 1 0 1 0 0
...............ACAGCAGCAACAACAACA.......................................................................................................................................................................................................................... 18 0 20 0.05 1 0 1 0 0

Anti-sense strand reads

CGTCGTTGTTGTTGTTGTCGTCGTTGTTGTTGTTGTTGTTGTTGTTGTATCACATGTCGTCGGTCGTCGTTGTTGTTGTCGATGTCGATGATGATGTTGTTGTTGTTTGTAAACGTGATCGTGAGTTAGTCTGTGTCTGTGACTACTACTCCTACCACTACCATAACTATTCTCAGGCGAAAATCCAAACATGGTATTTGTTGTTTTTGTTGTTGTTGTTGTTGTTGTGTTTGACGTGGGTGGGTTTTTGT
**************************************************.((((.((.(((.(((.............)))...))).))..)))).................(((((...(((((((((.........)))))..))))..)))))(((((((...((((((....)))))).....))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V056
head
 V049
head
 V110
male body
....................................................................................................TGGTGTTTCTAGACGTGATC................................................................................................................................... 20 3 11 0.27 3 2 0 0 1
............................................TTGTACCACATGTCGTAAGT........................................................................................................................................................................................... 20 3 6 0.17 1 0 1 0 0
.............................................................................................................................TGGGCCTGTGTCTGTGACTAC......................................................................................................... 21 3 10 0.10 1 0 0 1 0
....GTTGTTGTTGTTGTCGTCGTTGTT............................................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6359:1013188-1013438 + dmo_546 GCAGCAACAACAACAACAGCAGCAACAA---CAACAACAACAACAACAACATA-------GTGTACAGCAG---C--CAGCAGCA---------------------------------ACAACAACAGC---TACAGCT------------------------------------ACTACTACAACAA---C--AAC-------------------AAAC-------------------------------------A-----TTTGCACTAGCACTC-----------------------------------------------------------------------------------------AATCAGACACAGAC--ACT--------GATGATGAGGATGGTGATGGTATT------------------------GAT-------------------------------------------AAGAGTCCGCTTTTAGGTTTG-TACCATA-----------------------------------------------------------------------------AACAACAAAAACAACA---------------ACAAC---------------------AACAA-----CAACACAAACTGCACCCAC---------CCAAA-AACA--
droVir3 scaffold_13042:442063-442291 - -CAGCAGCAGCAACAACAACAACAACTA---CAACATTGTGTA----------------------CAGCAG---A--CAGCAGCAACAA---------------CAACAACA------ACAACAACAACAAC------------------------------------------------------AA---C--AAC-------------------AAAC-------------------------------------A-----TTTGCACTAGCACTC-----------------------------------------------------------------------------------------AATCAGACACAGAC--ACT--------GAGGATGAGGATGGTGATGGTATT------------------------GAT-------------------------------------------AAGAGTCCGCTTTTAGGTTTG-TACCATA-----------------------------------------------------------------------------AACAACAACAACAACA---------------AC------------------AA---CAACAA-AG---TGCACCCCCTCCACCCAC-------------A-AATG--
droGri2 scaffold_14853:4041295-4041480 + GCAACAACAACAATGTGTTCAACAACAT---------------------------------------GCAG------CAGCAGCA---------------------------------CCAAC---------------------------------------------------------------AA---C--AAC-------------------AAAC-------------------------------------A-----TTTGCACTAGCACTC-----------------------------------------------------------------------------------------AATCAGACACAGAC--ACT--------GAGGATGAGGATGGTGATGGTATT------------------------GAT-------------------------------------------AAGAGTCCGCTTTTAGGTTTG-TACCATA-----------------------------------------------------------------------------AACAACAACAACAACA---------------A--------------------------ACAA-----CAA--AGTGCACCCCCAA--------------GCAACA--
droWil2 scf2_1100000004515:3348341-3348583 + ACAACAACAACAACAGCAGCAGCAAAAA---CAACAACAACAACAACAACAAC-------AAGAACAACAA---CAG---CAACA---------------------------------ACAACAACAGCAACAACAAC---AACAACAACA---------ACAAC------A---------ACAACAACAAC-----------------------------------------------------------------A-------------------------------------------------------------------------------------ACAACA---ACA-----------------ACAACAACAACAACA---A---------------------------------------C------------------------------AACAACAACAACAACAACAACAACAACAACA----------------------------------------------------------------------------------ACACCAACAGCAACAC---C------AACAGC---------AA---C---ATCAGCAGCAAC---------AA---CAACAA-----CAACAACAACAACAACAAC---------------AACA--
dp5 XL_group1e:8487776-8488041 - GCAGCAGAATCAACAACAACAACAACAA---CAGCAACAGCAGCAGCAACATTCACT---AGCAGCACTAG------------CACCAGTAATACCAGTAGCAAATACA-CTACAACTACAACTACAGCACCATCATC---AG------CA---------TCA-------CC---------ACAGCCACAGCCA--C---------------------------------------------------AAC--------------------------------------------------------------------------------------------------------------------------------CATCTCCA---TAATCAGCATCAACAT------------------------CAGCAACATCAGAAT-------------------------------------------CAGAATCAACAACAACAACTC-CATCATC-----------------------------------------------------------------------------AACAACAACAACAACA---------------ACATC---------------------ACCAA-----CAACCCCAACAGCAACAAC---------AT--C-ATCAGC
droPer2 scaffold_2:5826595-5826829 - GCAGCAGCAGCAACAGCAGCAACAACAG---CAACAGCAGCAACAGCAGCAAC-------------AGCAA------------CAGC---------------------AGCA------ACAGCAACAGCAGCAGCAGCA---A---------------------------CA---------ACAGCAACAGCAA--C---------------------------------------------------AAC------A-------------------------------------------------------------------------------------GCAACAGC--------------------------------------------------------------------------------------------------------------A---GCAGC------------------AGCA-------------------------GCAAGTTTTTGCTGTCAGCAGCATTAAAGTAAAAAGTGAAAA-----C---------ACATTAGCAGCAGTAA---C------AGCAAC---------AG---T---TGCAACA---CC---------AACAACAACAA-----CAACTAATGCAACACCAGC---------------AGCA--
droAna3 scaffold_13337:19297506-19297756 - GGAACTGCAACGGCCACAGCAACAGCAA---CTACAACTGGAACAGCAACAGC-------AA---CAGCAACTGCAA---CAGCA---------------------------------ACTA---CAACTGCAACAGCAACTACAAGTGCA---------ACAGC-----------------------------------------------------------------------------------AACTTCAACT-------------------------------------------------------------------------------------CCAACAGCAACA--------------------ACAATTACAACA---GAAACTAGAA-----CAGCAA-------------------CAG------------------------------------------CA----------------------------------------ACTTAA---------------------------------------------------ATTACAACAGCAGCTA---G------AACAGC---AACAGCAA---T---TACAACA---GC---------AG---CTAGAA-----CAACAACAACAGCTACAACAGCATCACCAA--A-TACAAC
droBip1 scf7180000396413:1233570-1233800 - GCAACAACCACAGCAGCAGCAGCAGCAG---CAACCACCACAACAACAGCAGC-------------AGCAG------------CAGC---------------------AGCA------ACAACAACAGCAACC---------------------------------------------------------------TGTGGT--------------------------------------------------------------TTT--CCAGAGA---ACCATAAGCAGCAACTTC-----------------------------------------------CAGCA------ACAGCCGCTTAAAACCATAAA------------------CATGATGACCAT------------GGCGGATGTGATGGG-----------CAAGTATCAGCAGCAGCA---GCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------A---GCAACCACAACAG---CAGCAA-----CAACGCCATCAGACCCAGC---------------AACA--
droKik1 scf7180000302136:9945-10184 - ACCGCCACAACAACAACTGCTACAACAA---CAACCGCTACAACAACAACGTG-------CA---CTACCACGACCG---CCACA---------------------------------ACAA---CAACTGCTACAACAACAACCGCTACA---------ACAACAAC------------------------------------------------GTGC------------------------------------------------ACTACCAC------------------------------------------------------------------------A---ACC-----------------GCCACAACAACAACT---G---------------------------------------CTAC---------------------------A---ACAACAACCGCTACAAC------AACA-------------------------ACGTG------------------------------------------C---------ACTACCACGACCGCCA---C------AACAAC---------AA---C---TGCTACAACAAC---------AA---CCGCTA-----CAACAACAACTGCTACAAC---------------AACA--
droFic1 scf7180000453829:1093087-1093326 + GCAGCAACTACAACAACAACAGCAGCAA---CAGCAGCAGCAACAACAGCAACA-GCAGCAACTA---------CAA---CAACA---------------------------------ACAG---CAGCAGCAGCAGCAACTACAACAACA---------ACAGCACCAAAT---------ACAACAACAGC-----------------------------------------------------A----------------------------------------------------------------------------------------------------------GCA--------------------ACAGACACTGCA---GCA---A---------------------------------C------------------------------AGCAACAACAGCAGCATCAGCAACTACAGCA----------------------------------------------------------------------------------ATTTCAGCAGAAGCAA---C------AACAGC---------AA---T---TGCAGCA---GG---------AG---CAACAG-----CAGCAGCAACTCCAACAGC---------------AACA--
droEle1 scf7180000491023:493341-493608 + TCAGCCACGTCAATAACAACAACAGCAGCAATAGCAACAACAACAACAACATT-------TAAAGTTGCAG---CAG---CAGCA---------------------------------ACAACTACTGTAACAATATC---AG---------------------------CT---------ATAGGAATAGC-----------------------------------------------------AACAACAACAACG-------------------------------------------------------------------------------------CCAGCA-----------------------------------------------A---------------------------------T------ATCAACCTTAGAAACAGC------AACAACAACAACATAATTGTTTGCAAAAACA-------------------------------------------------------------------ACAACATCAGCTATGTCTGCAAC-ATAGGAAAAGC------A---AA---------AAGCATACCAATAGCA---GC---------AA---CAACATCGATATATTAACTACAAAAACAAC---------------AACA--
droRho1 scf7180000763478:26251-26489 - ACAGACACAACAACAACCGCAACAACAA---CAACGACACCA-GAACAGCACA-------TTTAACAACAA---------CAACA---------------------------------ACAACAACAGCAACCGT--G---------CACC---------ACAGC---------------------AA---------------------------CACTCTTCACCAAACAACCAGAACAATAGTA---GC----------------------------------------CACC--------------------------------------------ACCACCATCATCATCA--------------------TCAACAACATG-CCTTAGCCAAAAG-----TCTCAG-------------------CAG------------------------CA----------------------------------------------------------ACTTGC---------------------------------------------------ACAGC---------------------AGCAGCAACA------T---G---AGC------------------------AGCAA-----CAACATGAACAGCAGCAAC---------AT--G-AGAA--
droBia1 scf7180000302193:4351507-4351733 + GCAGCAACAACAACAGCAGCAGCAGCAG---CAGCAACACCAGCAGCAACAGC-------AGCAGCAACAT---CAG---CAGCA---------------------------------GCAG---------CAGCAGCA----------------------------------------------------CACACC-------------------GAAC-------------------------------------ACACCATCCT--CCAGCGCGGGATCATCGGCC--------------------------------------------------------------------------------------AC-----------------GATGACCAGCCAGGTGATGTCGCCGCAGAGTCCGCTGGG-----------CAGCT-----------------------------------------------------------------------CCT------------------------------------------------CCGCTGGCAAC------------------C---AG---------GC---T---AACAACA---AC---------AA---CAACAA-----TAGCAGCACCAACAACAAT---------------AACA--
droTak1 scf7180000415078:303449-303712 + CCACCAACAACAACAACCACAACAACAG---CAGCAACATCAACAACAGCATAT-ATTGCAAGTGCAACAG------------CAGCAG---------------CA------------ACAACAACAAC---TTTTGTT---------ATTGCCACAGCAA---------CA---------ACAGCAGCAGC-----------------------------------------------------AACAACAACAACA-----TTTG--CTAGTGTGTAAC--------------------------------------------------------------------------------------AATCAAATA--AAT--AA---------------------------------------------C------------------------------AACAATAATAGCAGTAATAGTTGTCACAACAGTTATCAAT----------------------------------------------------------------------------------ATAGTTACAAC------A---AT---------AA---T---AATAATA---AC---AACAACAA---CAGCAG-----CAA--CCAGCAGTTACAAC---------------AACA--
droEug1 scf7180000409711:490885-491127 - ACAGCAACAACAGGCGCAGCAGCAACAGAATCAACAACAGCAGCATCAGCTAC-------GTGTGCAACAG------------CAACAACAAAACCAACAG---CAACGGTTGCA---------------------------------ACA---------ACAACAACAAAATCAACA---ACAGCAGAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCGTTT---GCA---A---------------------------------C------------------------------A---GCAAC---------GACTGCAACAGCA-------------------------------------------------------------------GCAGAACCAGCATCGTTTGCAACAAAACCAA---C------AGGAAC---------GC---T---TACAGCA---AC---------AG---CAGCAG-AA-CCAGCATCGTTTTCAACAAA---------------ACCA--
dm3 chr3R:26186517-26186774 + GCAGCAGCAGCAACCACAGCAGCAACAA---CAACAGCAGCAGCAACAGACAC-------------AACAA---------------------------------CAACAGTCACA---ACAA---CAACAGCAGCAGCA------------------------------------GCA---GCAGCAACATCAGCCTGTGGT--------------------------------------------------------CAGCACTTT--TCAGAGGG------------GCAACTTC-----------------------------------------------CCTCA------ACAGTCCCATAAAACCATGAA------------------CATGATGGCCAT------------GGCGGATGTGATGAG-----------CAAGTACCAGCAGCAGCA---GCACC----------------------------------------------------------------------------------------------------------------------------AACAGCAGCAGCAACA------------------------GC---------GC---CAGCAG-----CAACACAACCTGCAGCCAC---------------AGCA--
droSim2 3r:325026-325259 + ACACCAACCACAACGACACCAACTACAA---CAACAACAACTACAACAACGCC-------AACTACAACGA---CAC---CAACTACAA---------------CAACAATAACA------ACTACTACAACAACACC------------------------AA------CT---------ACAACAACACC-----------------------------------------------------A----------------------------------------------------------------------------------------------------------ACC--------------------ACAACGACACCA---ACT---A---------------------------------C------------------------------AACTACAACAACGCCAACTACAACGACATCA----------------------------------------------------------------------------------ACTACGACAACACCAA---C------TACAAC---------AA---C---TACAACT---AC---------AA---CAACAC-----CAACAACAACAACTACAAC---------------AACA--
droSec2 scaffold_8:2716526-2716758 - GCAGCAGCAACAGCAGCAGCAGCAGCAA---CAGCAGCAGCAACAGCAGCAAC-------AGTTGCAACAG---CAG---CAGCA---------------------------------ACAC---------------T----------------------------------------------------------------ATCACCACTACAGC---------------------------------------------------------------GCCAATAGCAACAACTACAAAATGCATTTGACTACCACATCGAGCAATTCAACGGCATCTAATGCCAACAACAAC-----------------------------------------------------------------------------------------------------------A---ACAAC---AAT-----------------------------------ACGGCA-----------------------------------------------------------------------------AACAACAACAAC---------AC---A---AGCAGCA---AC---------AA---CAACAC-GA-CCAA---CACGAACGGCAGC---------------AGCA--
droYak3 X:6906306-6906545 - GCAGCAGCAACAACACCATCAGCAGCAG---CAGCATCATCAGCAGCAACGTGTTGTTGCCA--GCAGCAA---C--CAGCAACA---------------------------------ACAGCAACAGC---TGCAGCA------------------------------------GCA---GC---AG---C--AAC-------------------A-AC-------------------------------------A-----TCAGCAGC-----------AGCAGCAGCAGCATGATAATG----------------------------------------------------------------------------------GA---CCA---A-CG-----TCCCA---TCATT------------------------TGC-------------------------------------------ATCAATCATCTATCAGCATTTCTA----------------------------------------------------------------ATCAGCAAAAT--A------------AAGC---------GA---C----GCAACA---GC---------AA---CAACAG-----CAGCAGCAGCAACACCAAA---------------AGCA--
droEre2 scaffold_4690:17076805-17077040 - GCAGCAGCAGCAGCAGCAGCAGCAGCAA---CAACATCTGCAGCAGCAACAGT----------TGCAACAG---CAG---CAGCA---------------------------------ACAC---------------T----------------------------------------------------------------ATCACCACTACAGC---------------------------------------------------------------GGCAATAGCAACAACTACAAAATGCATTTGACTACCACGTCGAGCAACTCAACGGCATCCAATGCCAATAACAAC-----------------------------------------------------------------------------------------------------------A---ACAAT---AAT-----------------------------------ACGGCA-----------------------------------------------------------------------------AACAACAACAACAACA------C---A---AGCAGCA---AC---------AA---CAACAC-GA-CAAACACGAACGGCAGCAGC---------------AACA--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GCAGCAACAACAACAACAGCAGCAACAA---CAACAACAACAACAACAACATA-------GTGTACAGCAG---C--CAGCAGCA---------------------------------ACAACAACAGC---TACAGCT------------------------------------ACTACTACAACAA---C--AAC-------------------AAAC-------------------------------------A-----TTTGCACTAGCACTC-----------------------------------------------------------------------------------------AATCAGACACAGAC--ACT--------GATGATGAGGATGGTGATGGTATT------------------------GAT-------------------------------------------AAGAGTCCGCTTTTAGGTTTG-TACCATA-----------------------------------------------------------------------------AACAACAAAAACAACA---------------ACAAC---------------------AACAA-----CAACACAAACTGCACCCAC---------CCAAA-AACA--SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGTATT------------------------GAT-------------------------------------------AAGAGTCCGCTTT........................................................................................................................................................................................................2611.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTATT------------------------GAT-------------------------------------------AAGAGTCCGCT..........................................................................................................................................................................................................2311.001000001
...GCAACAACAACAACAGCAGCAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102200000
.......................AACAA---CAACAACAACAACAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---------------ACAAC---------------------AACAA-----CAACACAAAC..............................24120.081100000
.......CAACAACAACAGCAGCAACAA---CA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
........AACAACAACAGCAGCAACAA---..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
........AACAACAACAGCAGCAACAA---CAACAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
............ACAACAGCAGCAACAA---CAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
...............ACAGCAGCAACAA---CAACAACAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
..AGCAACAACAACAACAGCAGCAACAA---CA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000010
...............ACAGCAGCAACAA---CAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000010
droVir3
-CAGCAGCAGCAACAACAACAACAACTA---CAACATTGTGTA----------------------CAGCAG---A--CAGCAGCAACAA---------------CAACAACA------ACAACAACAACAAC------------------------------------------------------AA---C--AAC-------------------AAAC-------------------------------------A-----TTTGCACTAGCACTC-----------------------------------------------------------------------------------------AATCAGACACAGAC--ACT--------GAGGATGAGGATGGTGATGGTATT------------------------GAT-------------------------------------------AAGAGTCCGCTTTTAGGTTTG-TACCATA-----------------------------------------------------------------------------AACAACAACAACAACA---------------AC------------------AA---CAACAA-AG---TGCACCCCCTCCACCCAC-------------A-AATG--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................AGACACAGAC--ACT--------GAGGATGAGGAT.......................................................................................................................................................................................................................................................................................................2511.001000000000100000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AGAC--ACT--------GAGGATGAGGATGGT....................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAACA---------------AC------------------AA---C..................................................21200.153000000000000000003000000000000000000000000000000000000000000000
....................................................................CAG---A--CAGCAGCAACAA---------------CAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.141000000000000000000000000000000000000000100000000000000000000000
........................................................................................................................AACAACAACAAC------------------------------------------------------AA---C--AAC-------------------AAAC-------------------------------------A-----......................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
...GCAGCAGCAACAACAACAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-----------------------------------------------------------------------------AACAACAACAACAACA---------------AC------------------AA---CA.................................................25200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------------------AACAACAACAACAACA---------------AC------------------AA---CAAC...............................................25200.051000000000000000001000000000000000000000000000000000000000000000
....CAGCAGCAACAACAACAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000100000000000000000000000000000
..............................................................................AGCAGCAACAA---------------CAACAACA------ACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000100000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA---------------AC------------------AA---CAACAA-AG---T......................................21200.051000100000000000000000000000000000000000000000000000000000000000
.................................................................................AGCAACAA---------------CAACAACA------ACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
....CAGCAGCAACAACAACAACAACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................CAACAACAACAAC------------------------------------------------------AA---C--AAC-------------------AAAC-------------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
GCAACAACAACAATGTGTTCAACAACAT---------------------------------------GCAG------CAGCAGCA---------------------------------CCAAC---------------------------------------------------------------AA---C--AAC-------------------AAAC-------------------------------------A-----TTTGCACTAGCACTC-----------------------------------------------------------------------------------------AATCAGACACAGAC--ACT--------GAGGATGAGGATGGTGATGGTATT------------------------GAT-------------------------------------------AAGAGTCCGCTTTTAGGTTTG-TACCATA-----------------------------------------------------------------------------AACAACAACAACAACA---------------A--------------------------ACAA-----CAA--AGTGCACCCCCAA--------------GCAACA--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-----------------------------------------------------------------------------AACAACAACAACAACA---------------A--------------------------.................................................20200.05110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACA---------------A--------------------------ACAA-----CA......................................21200.05110
droWil2
ACAACAACAACAACAGCAGCAGCAAAAA---CAACAACAACAACAACAACAAC-------AAGAACAACAA---CAG---CAACA---------------------------------ACAACAACAGCAACAACAAC---AACAACAACA---------ACAAC------A---------ACAACAACAAC-----------------------------------------------------------------A-------------------------------------------------------------------------------------ACAACA---ACA-----------------ACAACAACAACAACA---A---------------------------------------C------------------------------AACAACAACAACAACAACAACAACAACAACA----------------------------------------------------------------------------------ACACCAACAGCAACAC---C------AACAGC---------AA---C---ATCAGCAGCAAC---------AA---CAACAA-----CAACAACAACAACAACAAC---------------AACA--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
ACAACAACAACAACAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.20400040
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC---------AA---C---ATCAGCAGCAAC---------AA---CA.................................................2560.17100010
.CAACAACAACAACAGCAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200020
.................................................CAAC-------AAGAACAACAA---CAG---CAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.10100010
.CAACAACAACAACAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200200
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA----------------------------------------------------------------------------------ACACCAACAGCAAC.................................................................................................................21170.06100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---C---ATCAGCAGCAAC---------AA---CAAC...............................................21190.05100010
...........................................................................................................................................................................A---------ACAACAACAAC-----------------------------------------------------------------A-------------------------------------------------------------------------------------ACAACA---A............................................................................................................................................................................................................................................................................................................................................................20200.05101000
..................................................................AACAA---CAG---CAACA---------------------------------ACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
..................................................................AACAA---CAG---CAACA---------------------------------ACAACAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.......CAACAACAGCAGCAGCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
..........................................ACAACAACAAC-------AAGAACAACAA---CA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---C---ATCAGCAGCAAC---------AA---C..................................................18200.05100010
..........................................................................CAG---CAACA---------------------------------ACAACAACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA----------------------------------------------------------------------------------ACACCAACAGCAA..................................................................................................................18200.05100010
....CAACAACAACAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000
.CAACAACAACAACAGCAGCAGCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100100
dp5
GCAGCAGAATCAACAACAACAACAACAA---CAGCAACAGCAGCAGCAACATTCACT---AGCAGCACTAG------------CACCAGTAATACCAGTAGCAAATACA-CTACAACTACAACTACAGCACCATCATC---AG------CA---------TCA-------CC---------ACAGCCACAGCCA--C---------------------------------------------------AAC--------------------------------------------------------------------------------------------------------------------------------CATCTCCA---TAATCAGCATCAACAT------------------------CAGCAACATCAGAAT-------------------------------------------CAGAATCAACAACAACAACTC-CATCATC-----------------------------------------------------------------------------AACAACAACAACAACA---------------ACATC---------------------ACCAA-----CAACCCCAACAGCAACAAC---------AT--C-ATCAGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................TACAGCACCATCATC---AG------CA---------TCA-------CC---------ACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000200
................................................ACATTCACT---AGCAGCACTAG------------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
.........................................................................................................TACA-CTACAACTACAACTACAGCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------ACATC---------------------ACCAA-----CAACCCCAACAA............................2311.0010010000000
.................................................................................................................................................................CA-------CC---------ACAGCCACAGCCA--C---------------------------------------------------AAC--------------------------------------------------------------------------------------------------------------------------------CATCT.............................................................................................................................................................................................................................................................................................................................2611.0010010000000
...............................................AACATTCACT---AGCAGCACTAG------------CACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATCAGAAT-------------------------------------------CAGAAT...............................................................................................................................................................................................................1911.0010000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAACAACAACTC-CAT............................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA---------------ACATC---------------------ACCAA-----CAACCCCAACA.............................2611.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACTC-CATCATC-----------------------------------------------------------------------------AA.........................................................................................................2411.0010010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACTC-CATCATC-----------------------------------------------------------------------------AACAA......................................................................................................2111.0010010000000
....................................................................................................................CTACAACTACAGCACCATCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACTC-CATCATC-----------------------------------------------------------------------------A..........................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACTC-CATCATC-----------------------------------------------------------------------------AACAAC.....................................................................................................2611.0010001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CAT------------------------CAGCAACATCAGAAT-------------------------------------------CAGAATC..............................................................................................................................................................................................................2511.0010000100000
......................................................................................................AAATACA-CTACAACTACAACTACAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
..........................................................................................................................................................................................................................................................C--------------------------------------------------------------------------------------------------------------------------------CATCTCCA---TAATCAGCATC............................................................................................................................................................................................................................................................................................................2011.0010000100000
...............................................................................................................TACAACTACAACTACAGCACCATCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
.........................................................................................................................................C---AG------CA---------TCA-------CC---------ACAGCCACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC-CATCATC-----------------------------------------------------------------------------AACAACAACA.................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------CAGAATCAACAACAACAACTC-CATCATC-----------------------------------------------------------------------------...........................................................................................................2911.0010010000000
.CAGCAGAATCAACAACAACAACAACAA---C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------CAGAATCAACAACAACAACTC-CATCAT.........................................................................................................................................................................................2811.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCATCAACAT------------------------CAGCAAC........................................................................................................................................................................................................................................................................2111.0010010000000
...............................................................................................................................GCACCATCATC---AG------CA---------TCA-------CC---------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATC-----------------------------------------------------------------------------AACAACAACAACAACA---------------............................................................................20200.3570610000000
...................CAACAACAA---CAGCAACAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26110.0910000100000
.................AACAACAACAA---CAGCAACAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24110.0910100000000
.......AATCAACAACAACAACAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20120.0810100000000
..................ACAACAACAA---CAGCAACAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23140.0710001000000
...................CAACAACAA---CAGCAACAGCAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24150.0710100000000
........ATCAACAACAACAACAACAA---C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACA---------------ACATC---------------------A.................................................20200.0510010000000
..............AACAACAACAACAA---CAGCAACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510010000000
.......................AACAA---CAGCAACAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAACA---------------ACA.........................................................................18200.0510100000000
............ACAACAACAACAACAA---CA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATC-----------------------------------------------------------------------------AACAACAACAACAAC............................................................................................19200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACA---------------ACATC---------------------..................................................19200.0510100000000
..........................AA---CAGCAACAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC-----------------------------------------------------------------------------AACAACAACAACAACA---------------AC..........................................................................21200.0510010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAACA---------------ACATC---------------------A.................................................21200.0510100000000
..........................AA---CAGCAACAGCAGCAGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010000000
droPer2
GCAGCAGCAGCAACAGCAGCAACAACAG---CAACAGCAGCAACAGCAGCAAC-------------AGCAA------------CAGC---------------------AGCA------ACAGCAACAGCAGCAGCAGCA---A---------------------------CA---------ACAGCAACAGCAA--C---------------------------------------------------AAC------A-------------------------------------------------------------------------------------GCAACAGC--------------------------------------------------------------------------------------------------------------A---GCAGC------------------AGCA-------------------------GCAAGTTTTTGCTGTCAGCAGCATTAAAGTAAAAAGTGAAAA-----C---------ACATTAGCAGCAGTAA---C------AGCAAC---------AG---T---TGCAACA---CC---------AACAACAACAA-----CAACTAATGCAACACCAGC---------------AGCA--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................AA--C---------------------------------------------------AAC------A-------------------------------------------------------------------------------------GCAACAGC--------------------------------------------------------------------------------------------------------------A---GCAGC------------------AGCA-------------------------........................................................................................................................................................................................25150.071001000
.................................................................................................................................................................................................A--C---------------------------------------------------AAC------A-------------------------------------------------------------------------------------GCAACAGC--------------------------------------------------------------------------------------------------------------A---GCAGC------------------AGCA-------------------------........................................................................................................................................................................................24190.051010000
....................................................................................................................................................................................................C---------------------------------------------------AAC------A-------------------------------------------------------------------------------------GCAACAGC--------------------------------------------------------------------------------------------------------------A---GCAGC------------------AG...................................................................................................................................................................................................................21200.051001000
................................................................................................................................................................................................AA--C---------------------------------------------------AAC------A-------------------------------------------------------------------------------------GCAACAGC--------------------------------------------------------------------------------------------------------------A---GCAGC------------------.....................................................................................................................................................................................................................21200.051001000
.........................................................................................................................GCAACAGCAGCAGCAGCA---A---------------------------CA---------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
droAna3
GGAACTGCAACGGCCACAGCAACAGCAA---CTACAACTGGAACAGCAACAGC-------AA---CAGCAACTGCAA---CAGCA---------------------------------ACTA---CAACTGCAACAGCAACTACAAGTGCA---------ACAGC-----------------------------------------------------------------------------------AACTTCAACT-------------------------------------------------------------------------------------CCAACAGCAACA--------------------ACAATTACAACA---GAAACTAGAA-----CAGCAA-------------------CAG------------------------------------------CA----------------------------------------ACTTAA---------------------------------------------------ATTACAACAGCAGCTA---G------AACAGC---AACAGCAA---T---TACAACA---GC---------AG---CTAGAA-----CAACAACAACAGCTACAACAGCATCACCAA--A-TACAACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GCAACAACCACAGCAGCAGCAGCAGCAG---CAACCACCACAACAACAGCAGC-------------AGCAG------------CAGC---------------------AGCA------ACAACAACAGCAACC---------------------------------------------------------------TGTGGT--------------------------------------------------------------TTT--CCAGAGA---ACCATAAGCAGCAACTTC-----------------------------------------------CAGCA------ACAGCCGCTTAAAACCATAAA------------------CATGATGACCAT------------GGCGGATGTGATGGG-----------CAAGTATCAGCAGCAGCA---GCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------A---GCAACCACAACAG---CAGCAA-----CAACGCCATCAGACCCAGC---------------AACA--SizeHit CountTotal NormTotal
No Reads
droKik1
ACCGCCACAACAACAACTGCTACAACAA---CAACCGCTACAACAACAACGTG-------CA---CTACCACGACCG---CCACA---------------------------------ACAA---CAACTGCTACAACAACAACCGCTACA---------ACAACAAC------------------------------------------------GTGC------------------------------------------------ACTACCAC------------------------------------------------------------------------A---ACC-----------------GCCACAACAACAACT---G---------------------------------------CTAC---------------------------A---ACAACAACCGCTACAAC------AACA-------------------------ACGTG------------------------------------------C---------ACTACCACGACCGCCA---C------AACAAC---------AA---C---TGCTACAACAAC---------AA---CCGCTA-----CAACAACAACTGCTACAAC---------------AACA--SizeHit CountTotal NormTotal
No Reads
droFic1
GCAGCAACTACAACAACAACAGCAGCAA---CAGCAGCAGCAACAACAGCAACA-GCAGCAACTA---------CAA---CAACA---------------------------------ACAG---CAGCAGCAGCAGCAACTACAACAACA---------ACAGCACCAAAT---------ACAACAACAGC-----------------------------------------------------A----------------------------------------------------------------------------------------------------------GCA--------------------ACAGACACTGCA---GCA---A---------------------------------C------------------------------AGCAACAACAGCAGCATCAGCAACTACAGCA----------------------------------------------------------------------------------ATTTCAGCAGAAGCAA---C------AACAGC---------AA---T---TGCAGCA---GG---------AG---CAACAG-----CAGCAGCAACTCCAACAGC---------------AACA--SizeHit CountTotal NormTotal
No Reads
droEle1
TCAGCCACGTCAATAACAACAACAGCAGCAATAGCAACAACAACAACAACATT-------TAAAGTTGCAG---CAG---CAGCA---------------------------------ACAACTACTGTAACAATATC---AG---------------------------CT---------ATAGGAATAGC-----------------------------------------------------AACAACAACAACG-------------------------------------------------------------------------------------CCAGCA-----------------------------------------------A---------------------------------T------ATCAACCTTAGAAACAGC------AACAACAACAACATAATTGTTTGCAAAAACA-------------------------------------------------------------------ACAACATCAGCTATGTCTGCAAC-ATAGGAAAAGC------A---AA---------AAGCATACCAATAGCA---GC---------AA---CAACATCGATATATTAACTACAAAAACAAC---------------AACA--SizeHit CountTotal NormTotal
No Reads
droRho1
ACAGACACAACAACAACCGCAACAACAA---CAACGACACCA-GAACAGCACA-------TTTAACAACAA---------CAACA---------------------------------ACAACAACAGCAACCGT--G---------CACC---------ACAGC---------------------AA---------------------------CACTCTTCACCAAACAACCAGAACAATAGTA---GC----------------------------------------CACC--------------------------------------------ACCACCATCATCATCA--------------------TCAACAACATG-CCTTAGCCAAAAG-----TCTCAG-------------------CAG------------------------CA----------------------------------------------------------ACTTGC---------------------------------------------------ACAGC---------------------AGCAGCAACA------T---G---AGC------------------------AGCAA-----CAACATGAACAGCAGCAAC---------AT--G-AGAA--SizeHit CountTotal NormTotal
No Reads
droBia1
GCAGCAACAACAACAGCAGCAGCAGCAG---CAGCAACACCAGCAGCAACAGC-------AGCAGCAACAT---CAG---CAGCA---------------------------------GCAG---------CAGCAGCA----------------------------------------------------CACACC-------------------GAAC-------------------------------------ACACCATCCT--CCAGCGCGGGATCATCGGCC--------------------------------------------------------------------------------------AC-----------------GATGACCAGCCAGGTGATGTCGCCGCAGAGTCCGCTGGG-----------CAGCT-----------------------------------------------------------------------CCT------------------------------------------------CCGCTGGCAAC------------------C---AG---------GC---T---AACAACA---AC---------AA---CAACAA-----TAGCAGCACCAACAACAAT---------------AACA--SizeHit CountTotal NormTotal
No Reads
droTak1
CCACCAACAACAACAACCACAACAACAG---CAGCAACATCAACAACAGCATAT-ATTGCAAGTGCAACAG------------CAGCAG---------------CA------------ACAACAACAAC---TTTTGTT---------ATTGCCACAGCAA---------CA---------ACAGCAGCAGC-----------------------------------------------------AACAACAACAACA-----TTTG--CTAGTGTGTAAC--------------------------------------------------------------------------------------AATCAAATA--AAT--AA---------------------------------------------C------------------------------AACAATAATAGCAGTAATAGTTGTCACAACAGTTATCAAT----------------------------------------------------------------------------------ATAGTTACAAC------A---AT---------AA---T---AATAATA---AC---AACAACAA---CAGCAG-----CAA--CCAGCAGTTACAAC---------------AACA--SizeHit CountTotal NormTotal
No Reads
droEug1
ACAGCAACAACAGGCGCAGCAGCAACAGAATCAACAACAGCAGCATCAGCTAC-------GTGTGCAACAG------------CAACAACAAAACCAACAG---CAACGGTTGCA---------------------------------ACA---------ACAACAACAAAATCAACA---ACAGCAGAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCGTTT---GCA---A---------------------------------C------------------------------A---GCAAC---------GACTGCAACAGCA-------------------------------------------------------------------GCAGAACCAGCATCGTTTGCAACAAAACCAA---C------AGGAAC---------GC---T---TACAGCA---AC---------AG---CAGCAG-AA-CCAGCATCGTTTTCAACAAA---------------ACCA--SizeHit CountTotal NormTotal
No Reads
dm3
GCAGCAGCAGCAACCACAGCAGCAACAA---CAACAGCAGCAGCAACAGACAC-------------AACAA---------------------------------CAACAGTCACA---ACAA---CAACAGCAGCAGCA------------------------------------GCA---GCAGCAACATCAGCCTGTGGT--------------------------------------------------------CAGCACTTT--TCAGAGGG------------GCAACTTC-----------------------------------------------CCTCA------ACAGTCCCATAAAACCATGAA------------------CATGATGGCCAT------------GGCGGATGTGATGAG-----------CAAGTACCAGCAGCAGCA---GCACC----------------------------------------------------------------------------------------------------------------------------AACAGCAGCAGCAACA------------------------GC---------GC---CAGCAG-----CAACACAACCTGCAGCCAC---------------AGCA--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................GATGGCCAT------------GGCGGATGTGAT...............................................................................................................................................................................................................................................................................21110.001000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TGATGGCCAT------------GGCGGATGTGATGAG-----------C................................................................................................................................................................................................................................................................2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100000000000000000000004000
........................................................................................................................................................................................GCAACATCAGCCTGTGGT--------------------------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008
....................................................................................................................................................................................................................................................................................................................................................................................................................AT------------GGCGGATGTGATGAG-----------CAA..............................................................................................................................................................................................................................................................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
.........................................................................................................................................................................................CAACATCAGCCTGTGGT--------------------------------------------------------CAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................CAACATCAGCCTGTGGT--------------------------------------------------------CAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGATGAG-----------CAAGTACCAGCAGCAG.................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................AA------------------CATGATGGCCAT------------GGCGGATGTGA................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TGATGGCCAT------------GGCGGATGTGATGAA-----------.................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CCAT------------GGCGGATGTGATGAG-----------CA...............................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000001000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................CAGCAACATCAGCCTGTGGT--------------------------------------------------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATGTGATGAG-----------CAAGTACCA........................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................ACATCAGCCTGTGGT--------------------------------------------------------CAGCACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TGATGGCCAT------------GGCGGATGTGATGAG-----------.................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------------------------------------------------------------------------------------------------------------------AACAGCAGCAGCAACA------------------------GC---------GC---...................................................2133.67110000000000000000000000000000000001000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................GGT--------------------------------------------------------CAGCACTTT--TCAGAGGG------------G...........................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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........................................................................................................................AA---CAACAGCAGCAGCA------------------------------------GCA---GC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000001010
..................................................................................................................................GCAGCAGCA------------------------------------GCA---GCAGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAGCAACAA---CAACAGCAGCAGCAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.2550000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
droSim2
ACACCAACCACAACGACACCAACTACAA---CAACAACAACTACAACAACGCC-------AACTACAACGA---CAC---CAACTACAA---------------CAACAATAACA------ACTACTACAACAACACC------------------------AA------CT---------ACAACAACACC-----------------------------------------------------A----------------------------------------------------------------------------------------------------------ACC--------------------ACAACGACACCA---ACT---A---------------------------------C------------------------------AACTACAACAACGCCAACTACAACGACATCA----------------------------------------------------------------------------------ACTACGACAACACCAA---C------TACAAC---------AA---C---TACAACT---AC---------AA---CAACAC-----CAACAACAACAACTACAAC---------------AACA--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................CC-------AACTACAACGA---CAC---CAACTACAA---------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100010000000000000
droSec2
GCAGCAGCAACAGCAGCAGCAGCAGCAA---CAGCAGCAGCAACAGCAGCAAC-------AGTTGCAACAG---CAG---CAGCA---------------------------------ACAC---------------T----------------------------------------------------------------ATCACCACTACAGC---------------------------------------------------------------GCCAATAGCAACAACTACAAAATGCATTTGACTACCACATCGAGCAATTCAACGGCATCTAATGCCAACAACAAC-----------------------------------------------------------------------------------------------------------A---ACAAC---AAT-----------------------------------ACGGCA-----------------------------------------------------------------------------AACAACAACAAC---------AC---A---AGCAGCA---AC---------AA---CAACAC-GA-CCAA---CACGAACGGCAGC---------------AGCA--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......CAACAGCAGCAGCAGCAGCAA---CAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510010
..................................CAGCAGCAACAGCAGCAAC-------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
..AGCAGCAACAGCAGCAGCAGCAGCAA---CA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.0510010
droYak3
GCAGCAGCAACAACACCATCAGCAGCAG---CAGCATCATCAGCAGCAACGTGTTGTTGCCA--GCAGCAA---C--CAGCAACA---------------------------------ACAGCAACAGC---TGCAGCA------------------------------------GCA---GC---AG---C--AAC-------------------A-AC-------------------------------------A-----TCAGCAGC-----------AGCAGCAGCAGCATGATAATG----------------------------------------------------------------------------------GA---CCA---A-CG-----TCCCA---TCATT------------------------TGC-------------------------------------------ATCAATCATCTATCAGCATTTCTA----------------------------------------------------------------ATCAGCAAAAT--A------------AAGC---------GA---C----GCAACA---GC---------AA---CAACAG-----CAGCAGCAGCAACACCAAA---------------AGCA--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................ATCATCAGCAGCAACGTGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000020000
.................................GCATCATCAGCAGCAACGTGTTGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
...........................................................................................................................................................................................................................................................................................................AATG----------------------------------------------------------------------------------GA---CCA---A-CG-----TCCCA---TCATT------------------------TG.................................................................................................................................................................................................................................................................2411.00101000000000
.....................................................................................................................................................................................................................................................................................................CATGATAATG----------------------------------------------------------------------------------GA---CCA---A-CG-----T.......................................................................................................................................................................................................................................................................................................1911.00100000010000
.......CAACAACACCATCAGCAGCAG---CAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------AAGC---------GA---C----GCAACA---GC---------AA---CAACA..............................................2311.00101000000000
.................................GCATCATCAGCAGCAACGTGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..........CAACACCATCAGCAGCAG---CAGCATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTA----------------------------------------------------------------ATCAGCAAAAT--A------------AAG................................................................................................2211.00101000000000
....................................TCATCAGCAGCAACGTGTTGTTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT--A------------AAGC---------GA---C----GCAACA---GC---------AA---CAACAG-----C.......................................2811.00110000000000
...........................................................................................................................................................................................................................................................................CAGC-----------AGCAGCAGCAGCATGATAATG----------------------------------------------------------------------------------GA---CC.....................................................................................................................................................................................................................................................................................................................2911.00100100000000
...........AACACCATCAGCAGCAG---CAGCATCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATT------------------------TGC-------------------------------------------ATCAATCATCTATCAGCATTT................................................................................................................................................................................................2711.00101000000000
..............ACCATCAGCAGCAG---CAGCATCATCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
.................................GCATCATCAGCAGCAACGTGTTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.........................................................TGCCA--GCAGCAA---C--CAGCAACA---------------------------------ACAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
....................................................................................................................................................................................................................................................................................................GCATGATAATG----------------------------------------------------------------------------------GA---CCA---A-CG-----T.......................................................................................................................................................................................................................................................................................................2011.00100000010000
...........AACACCATCAGCAGCAG---CAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000010000
.......................AGCAG---CAGCATCATCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100010000000
...........................................................................................................................................................................................................................................................................................GCAGCAGCAGCATGATAAT...............................................................................................................................................................................................................................................................................................................................................................................................................1920.50101000000000
................CATCAGCAGCAG---CAGCATCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.33100000010000
.....................................................................................................................................................................................GC---AG---C--AAC-------------------A-AC-------------------------------------A-----TCAGCAGC-----------AGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2640.25101000000000
...............................................................................................................................................................................................C--AAC-------------------A-AC-------------------------------------A-----TCAGCAGC-----------AGC................................................................................................................................................................................................................................................................................................................................................................................................................................19160.25401110100000
..........................................................................................................................................A------------------------------------GCA---GC---AG---C--AAC-------------------A-AC-------------------------------------A-----TCAGCAGC-----------A..................................................................................................................................................................................................................................................................................................................................................................................................................................2560.17101000000000
.......................AGCAG---CAGCATCATCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.14100010000000
..........................................................................................................................................................................................AG---C--AAC-------------------A-AC-------------------------------------A-----TCAGCAGC-----------AGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................2580.13101000000000
.......................................................................................................................................AGCA------------------------------------GCA---GC---AG---C--AAC-------------------A-AC-------------------------------------A-----TCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................2590.11101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---GC---------AA---CAACAG-----CAGCAGC.................................20200.10202000000000
...............................................................................................................................................................................................C--AAC-------------------A-AC-------------------------------------A-----TCAGCAGC-----------AGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................22110.09100000010000
..................................................................................................................................................................................................AAC-------------------A-AC-------------------------------------A-----TCAGCAGC-----------AGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................19180.06101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---GC---------AA---CAACAG-----CAGCAGCAGC..............................24190.05100010000000
...............................................................................................................................................................................................C--AAC-------------------A-AC-------------------------------------A-----TCAGCAGC-----------AG.................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000100000
droEre2
GCAGCAGCAGCAGCAGCAGCAGCAGCAA---CAACATCTGCAGCAGCAACAGT----------TGCAACAG---CAG---CAGCA---------------------------------ACAC---------------T----------------------------------------------------------------ATCACCACTACAGC---------------------------------------------------------------GGCAATAGCAACAACTACAAAATGCATTTGACTACCACGTCGAGCAACTCAACGGCATCCAATGCCAATAACAAC-----------------------------------------------------------------------------------------------------------A---ACAAT---AAT-----------------------------------ACGGCA-----------------------------------------------------------------------------AACAACAACAACAACA------C---A---AGCAGCA---AC---------AA---CAACAC-GA-CAAACACGAACGGCAGCAGC---------------AACA--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 10:32 PM