dmo_532

CDS [Dmoj\GI14561-cds]; exon [dmoj_GLEANR_15307:1]; CDS [Dmoj\GI14561-cds]; exon [dmoj_GLEANR_15307:2]; intron [Dmoj\GI14561-in]; Antisense to exon [dmoj_GLEANR_15305:1]; Antisense to CDS [Dmoj\GI14560-cds]

##################################################---------------------------------------------------------################################################## ATACGCCAGGGCCGGATTGGCAACGATGGTCAGGGTGGCCACCCTCGCGAGTAGTTGGGTTGCTATGTCGTCGATAGTGGGCGCTGCCACCGCTGGACTCGGAACAGCAGAGTCACGCCGAGGGCCTCCGAGCGCTATACGCCGGAATCCCAAGGCG ************************************************....((..(((.....(((.......((((......)))).....)))....)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V041 embryo	V110 male body	V049 head
.............................................................GCTATGTCGTCGATAGTGGGCGC.........................................................................	23	0	4	14.25	57	44	8	1	3	1
.............................................................GCTATGTCGTCGATAGTGGGC...........................................................................	21	0	4	13.75	55	24	4	17	10	0
..................................................................................................TCGGAACAGCAGAGTCACGCCGAGGGC................................	27	0	4	4.50	18	13	5	0	0	0
.............................................................GCTATGTCGTCGATAGTGGGCG..........................................................................	22	0	4	3.50	14	14	0	0	0	0
..................................................................................................TCGGAACAGCAGAGTCACGCCGAGGGCC...............................	28	0	4	3.25	13	4	9	0	0	0
..................................................................................................TCGGAACAGCAGAGTCACGCCGAGG..................................	25	0	4	2.50	10	9	1	0	0	0
.............................................................GCTATGTCGTCGATAGTGGGCGCT........................................................................	24	0	4	2.50	10	8	1	0	1	0
.............................................................GCTATGTCGTCGATAGTGGG............................................................................	20	0	4	2.00	8	7	0	0	1	0
.............................................................GCTATGTCGTCGATAGTGGGCGCTGC......................................................................	26	0	4	1.75	7	7	0	0	0	0
.............................................................GCTATGTCGTCGATAGTGGGCGCTG.......................................................................	25	0	4	1.75	7	7	0	0	0	0
..............................................................CTATGTCGTCGATAGTGGGCGC.........................................................................	22	0	4	1.25	5	5	0	0	0	0
.............................................................GCTATGTCGTCGATAGTGG.............................................................................	19	0	4	0.75	3	3	0	0	0	0
.............................................................................................TGGACTCGGAACAGCAGAGTCACGCCG.....................................	27	0	4	0.75	3	3	0	0	0	0
.............................................................................................TGGACTCGGAACAGCAGAGTCACGCC......................................	26	0	4	0.50	2	1	1	0	0	0
.............................................................GCTATCTCGTCGATAGTGGGCGCTGC......................................................................	26	1	4	0.50	2	2	0	0	0	0
..................................................................................................TCGGAACAGCAGAGTCACGCCGAGGG.................................	26	0	4	0.50	2	2	0	0	0	0
..............................................................CTATGTCGTCGATAGTGGGC...........................................................................	20	0	4	0.50	2	2	0	0	0	0
...................................................................................................CGGAACAGCAGAGTCACGCCGAGGGC................................	26	0	4	0.50	2	2	0	0	0	0
.............................................................................................TGGACTCGGAACAGCAGAGTCACGCCGAG...................................	29	0	4	0.25	1	1	0	0	0	0
..ACGCCAGGGCCGGATTGGCA.......................................................................................................................................	20	0	4	0.25	1	1	0	0	0	0
.............................................................GCTATGTCGTCGATAGTCGG............................................................................	20	1	4	0.25	1	1	0	0	0	0
.............................................................GCTATGTCGTCGATAGTGGGCGT.........................................................................	23	1	4	0.25	1	1	0	0	0	0
..............................................................CTATATCGTCGATAGTGGGCG..........................................................................	21	1	4	0.25	1	1	0	0	0	0
...................................................................................................CGGAACAGCAGAGTCACGCCAAGGGC................................	26	1	4	0.25	1	1	0	0	0	0
.............................................................................................TTGACTCGGAACAGCAGAGTCACGCC......................................	26	1	4	0.25	1	0	1	0	0	0
.............................................................................................TGGACTCGGAACAGCAGAGTCACGCCGT....................................	28	1	4	0.25	1	1	0	0	0	0
.......AGGGCCGGATTGGCAACGATGG................................................................................................................................	22	0	4	0.25	1	1	0	0	0	0
................................................................................................................TCACGCCGAGGGCCTCCGAGCGCT.....................	24	0	4	0.25	1	1	0	0	0	0
..................................................................................................TCGGAACAGCAGAGTCACGCCG.....................................	22	0	4	0.25	1	1	0	0	0	0
........................................................................................................CAGCAGAGTCACGCCGAGGGCCTCCGAG.........................	28	0	4	0.25	1	1	0	0	0	0
.............................................................GCTATGTCGTCGATAGTGGTCGC.........................................................................	23	1	4	0.25	1	0	1	0	0	0
.............................................................................................TGCACTCGGAACAGCAGAGTCACGCCGAG...................................	29	1	4	0.25	1	0	1	0	0	0
.............................................................GCTATGTCGTCGATAGTGGGCGCTGCC.....................................................................	27	0	4	0.25	1	1	0	0	0	0
.............................................................GCTTTGTCGTCGATAGTGGGC...........................................................................	21	1	4	0.25	1	0	1	0	0	0
..................................................................................................TCGGAACAGCAGAGTCACGCCGAG...................................	24	0	4	0.25	1	1	0	0	0	0
.............................................................GCTATGTCGTCGATAGTGGGCC..........................................................................	22	1	4	0.25	1	1	0	0	0	0
.........................................................................................................AGCAGAGTCACGCCGAGGGCCTCCGA..........................	26	0	4	0.25	1	1	0	0	0	0
.............................................................GCTACGTCGTCGATAGTGGGCG..........................................................................	22	1	4	0.25	1	0	0	0	1	0
..................................................................................................TCGGAACAGCAGAGTTACGCCGAGGGCC...............................	28	1	4	0.25	1	0	1	0	0	0
............................................................CGCTATGTCGTCGATAGTGGGC...........................................................................	22	1	4	0.25	1	1	0	0	0	0
.............................................................GCTATGTCGTCGCTAGTGGGG...........................................................................	21	2	4	0.25	1	0	0	1	0	0
.............................................................GCTATGTCGTCGATAGTG..............................................................................	18	0	4	0.25	1	1	0	0	0	0
..................................................................................................TCGGAACAGCAGAGTCACGCCGAGGGCCT..............................	29	0	4	0.25	1	1	0	0	0	0
........................................................................................................................AGGGCCTCCGAGCGCTATACGCCGG............	25	0	4	0.25	1	1	0	0	0	0
..............................................................CTATGTCGTCGATAGTGGGCGCT........................................................................	23	0	4	0.25	1	1	0	0	0	0
..............................................................CTATGTCGTCGATAGTGGGCGCTGC......................................................................	25	0	4	0.25	1	1	0	0	0	0
..................................................................GTCGTCGATAGTGGGCGCTGCC.....................................................................	22	0	4	0.25	1	1	0	0	0	0
..............................................................................................GGACTCGGAACAGCAGAGTCACGCC......................................	25	0	4	0.25	1	1	0	0	0	0
.............................................................GCTATGTCGTCGTTAGAGGGCGC.........................................................................	23	2	4	0.25	1	0	0	1	0	0
.............................................................GCTATGTCGTCGATAGCGGGC...........................................................................	21	1	4	0.25	1	0	0	1	0	0
...................................................................TCGTCGATAGTGGGCGCTGCC.....................................................................	21	0	4	0.25	1	0	1	0	0	0
...................................................................................................CGGAACAGCAGAGTCACGCCGAGGGCC...............................	27	0	4	0.25	1	1	0	0	0	0
.............................................................TCTATGTCGTCGATAGTGG.............................................................................	19	1	4	0.25	1	1	0	0	0	0
.......................................................................................CACCTCTAGACTCGCAACAGC.................................................	21	3	5	0.20	1	0	0	0	0	1
.................................................................TGTGGTCGACAGGGGGCGCT........................................................................	20	3	13	0.08	1	0	0	0	1	0
.........................................................................................................AGCAGAGTCACGCAGTGG..................................	18	2	18	0.06	1	1	0	0	0	0
..........................................................GTTGCTATGTCGTCTATGC................................................................................	19	3	20	0.05	1	0	1	0	0	0

##################################################---------------------------------------------------------##################################################
ATACGCCAGGGCCGGATTGGCAACGATGGTCAGGGTGGCCACCCTCGCGAGTAGTTGGGTTGCTATGTCGTCGATAGTGGGCGCTGCCACCGCTGGACTCGGAACAGCAGAGTCACGCCGAGGGCCTCCGAGCGCTATACGCCGGAATCCCAAGGCG
**************************************************....((..(((.....(((.......((((......)))).....)))....)))))**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V041
embryo

V110
male body

V049
head

.............................................................GCTATGTCGTCGATAGTGGGCGC.........................................................................

14.25

.............................................................GCTATGTCGTCGATAGTGGGC...........................................................................

13.75

..................................................................................................TCGGAACAGCAGAGTCACGCCGAGGGC................................

4.50

.............................................................GCTATGTCGTCGATAGTGGGCG..........................................................................

3.50

..................................................................................................TCGGAACAGCAGAGTCACGCCGAGGGCC...............................

3.25

..................................................................................................TCGGAACAGCAGAGTCACGCCGAGG..................................

2.50

.............................................................GCTATGTCGTCGATAGTGGGCGCT........................................................................

2.50

.............................................................GCTATGTCGTCGATAGTGGG............................................................................

2.00

.............................................................GCTATGTCGTCGATAGTGGGCGCTGC......................................................................

1.75

.............................................................GCTATGTCGTCGATAGTGGGCGCTG.......................................................................

1.75

..............................................................CTATGTCGTCGATAGTGGGCGC.........................................................................

1.25

.............................................................GCTATGTCGTCGATAGTGG.............................................................................

0.75

.............................................................................................TGGACTCGGAACAGCAGAGTCACGCCG.....................................

0.75

.............................................................................................TGGACTCGGAACAGCAGAGTCACGCC......................................

0.50

.............................................................GCTATCTCGTCGATAGTGGGCGCTGC......................................................................

0.50

..................................................................................................TCGGAACAGCAGAGTCACGCCGAGGG.................................

0.50

..............................................................CTATGTCGTCGATAGTGGGC...........................................................................

0.50

...................................................................................................CGGAACAGCAGAGTCACGCCGAGGGC................................

0.50

.............................................................................................TGGACTCGGAACAGCAGAGTCACGCCGAG...................................

0.25

..ACGCCAGGGCCGGATTGGCA.......................................................................................................................................

0.25

.............................................................GCTATGTCGTCGATAGTCGG............................................................................

0.25

.............................................................GCTATGTCGTCGATAGTGGGCGT.........................................................................

0.25

..............................................................CTATATCGTCGATAGTGGGCG..........................................................................

0.25

...................................................................................................CGGAACAGCAGAGTCACGCCAAGGGC................................

0.25

.............................................................................................TTGACTCGGAACAGCAGAGTCACGCC......................................

0.25

.............................................................................................TGGACTCGGAACAGCAGAGTCACGCCGT....................................

0.25

.......AGGGCCGGATTGGCAACGATGG................................................................................................................................

0.25

................................................................................................................TCACGCCGAGGGCCTCCGAGCGCT.....................

0.25

..................................................................................................TCGGAACAGCAGAGTCACGCCG.....................................

0.25

........................................................................................................CAGCAGAGTCACGCCGAGGGCCTCCGAG.........................

0.25

.............................................................GCTATGTCGTCGATAGTGGTCGC.........................................................................

0.25

.............................................................................................TGCACTCGGAACAGCAGAGTCACGCCGAG...................................

0.25

.............................................................GCTATGTCGTCGATAGTGGGCGCTGCC.....................................................................

0.25

.............................................................GCTTTGTCGTCGATAGTGGGC...........................................................................

0.25

..................................................................................................TCGGAACAGCAGAGTCACGCCGAG...................................

0.25

.............................................................GCTATGTCGTCGATAGTGGGCC..........................................................................

0.25

.........................................................................................................AGCAGAGTCACGCCGAGGGCCTCCGA..........................

0.25

.............................................................GCTACGTCGTCGATAGTGGGCG..........................................................................

0.25

..................................................................................................TCGGAACAGCAGAGTTACGCCGAGGGCC...............................

0.25

............................................................CGCTATGTCGTCGATAGTGGGC...........................................................................

0.25

.............................................................GCTATGTCGTCGCTAGTGGGG...........................................................................

0.25

.............................................................GCTATGTCGTCGATAGTG..............................................................................

0.25

..................................................................................................TCGGAACAGCAGAGTCACGCCGAGGGCCT..............................

0.25

........................................................................................................................AGGGCCTCCGAGCGCTATACGCCGG............

0.25

..............................................................CTATGTCGTCGATAGTGGGCGCT........................................................................

0.25

..............................................................CTATGTCGTCGATAGTGGGCGCTGC......................................................................

0.25

..................................................................GTCGTCGATAGTGGGCGCTGCC.....................................................................

0.25

..............................................................................................GGACTCGGAACAGCAGAGTCACGCC......................................

0.25

.............................................................GCTATGTCGTCGTTAGAGGGCGC.........................................................................

0.25

.............................................................GCTATGTCGTCGATAGCGGGC...........................................................................

0.25

...................................................................TCGTCGATAGTGGGCGCTGCC.....................................................................

0.25

...................................................................................................CGGAACAGCAGAGTCACGCCGAGGGCC...............................

0.25

.............................................................TCTATGTCGTCGATAGTGG.............................................................................

0.25

.......................................................................................CACCTCTAGACTCGCAACAGC.................................................

0.20

.................................................................TGTGGTCGACAGGGGGCGCT........................................................................

0.08

.........................................................................................................AGCAGAGTCACGCAGTGG..................................

0.06

..........................................................GTTGCTATGTCGTCTATGC................................................................................

0.05

############################################################################################################################################################# TATGCGGTCCCGGCCTAACCGTTGCTACCAGTCCCACCGGTGGGAGCGCTCATCAACCCAACGATACAGCAGCTATCACCCGCGACGGTGGCGACCTGAGCCTTGTCGTCTCAGTGCGGCTCCCGGAGGCTCGCGATATGCGGCCTTAGGGTTCCGC ************************************************....((..(((.....(((.......((((......)))).....)))....)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V110 male body	V041 embryo	V056 head
........CCCGGCCTAACCGTTGCTACCAGT.............................................................................................................................	24	0	4	7.00	28	10	17	1	0	0
.....GGTCCCGGCCTAACCGTTGCTACCAGT.............................................................................................................................	27	0	4	2.00	8	8	0	0	0	0
......GTCCCGGCCTAACCGTTGCTACCAGT.............................................................................................................................	26	0	4	1.75	7	5	1	0	1	0
........CCCGGCCTAACCGTTGCTACCATT.............................................................................................................................	24	1	4	1.00	4	0	4	0	0	0
.......TCCCGGCCTAACCGTTGCTACCAGT.............................................................................................................................	25	0	4	0.75	3	3	0	0	0	0
....CGGTCCCGGCCTAACCGTTGCTACCAGT.............................................................................................................................	28	0	4	0.75	3	2	1	0	0	0
..........................................GGAGCGCTCATCAACCCAACGATACAGGA......................................................................................	29	1	2	0.50	1	0	1	0	0	0
...........................................GAGCGCTCATCAACCCAACGATACAGCA......................................................................................	28	0	2	0.50	1	0	1	0	0	0
................................................................................................TGAGCCTTGTCGTCTCAGTGCGGCT....................................	25	0	4	0.50	2	2	0	0	0	0
.............................................GCGCTCATCAACCCAACGATACAGC.......................................................................................	25	0	2	0.50	1	1	0	0	0	0
.........CCGGCCTAACCGTTGCTACCAGT.............................................................................................................................	23	0	4	0.50	2	2	0	0	0	0
.............................................................................................................................GAGGCTCGCGATATGCGGCCTTAGGGT.....	27	0	4	0.25	1	0	0	1	0	0
...................................................................................CACGGTGGCGACCTGAGCCTTGTCGT................................................	26	1	4	0.25	1	1	0	0	0	0
...........................................................................................................................CGGAGGCTCGCGATATGCGGCCTT..........	24	0	4	0.25	1	1	0	0	0	0
........CCCGGCCTAACCGTTGCTACTAGT.............................................................................................................................	24	1	4	0.25	1	0	1	0	0	0
.........................................................................................GGCGACCTGAGCCTTGTCGTCTCAGTG.........................................	27	0	4	0.25	1	1	0	0	0	0
..............................................................................................................................AGGCTCGCGATATGCGGCCTTAGGGT.....	26	0	4	0.25	1	0	0	1	0	0
.........CCGGCCTAACCGTTGCTACCATT.............................................................................................................................	23	1	4	0.25	1	0	1	0	0	0
.....GGTCCCGGCCTAACCGTTGCTACCAGTC............................................................................................................................	28	0	4	0.25	1	1	0	0	0	0
.....GGTCCCGGCCTAACCGTTGCTACCA...............................................................................................................................	25	0	4	0.25	1	1	0	0	0	0
.........................................................................................GGCGACCTGAGCCTTGTCGTCTCAGT..........................................	26	0	4	0.25	1	1	0	0	0	0
............................................................................CACCCGCGACGGTGGCGACCT............................................................	21	0	4	0.25	1	0	1	0	0	0
...............................................................................................CTGAGCCTTGTCGTCTCAGTGCGGCT....................................	26	0	4	0.25	1	1	0	0	0	0
..............................................................................................CCTGAGCCTTGTCGTCTCAGTGCGGCT....................................	27	0	4	0.25	1	1	0	0	0	0
........CCCGGCCTAACCGTTGCTACCAGTCCC..........................................................................................................................	27	0	4	0.25	1	1	0	0	0	0
..................CCGTTGCTACCAGTCCCA.........................................................................................................................	18	0	4	0.25	1	0	1	0	0	0
......GTCCCGGCCTAACCGTTGCTAACAGT.............................................................................................................................	26	1	4	0.25	1	0	0	0	1	0
.....GGTCCCGGCCTAACCGTTGCTACC................................................................................................................................	24	0	4	0.25	1	1	0	0	0	0
.......TCCCGGCCTAACCGTTGCTACCAG..............................................................................................................................	24	0	4	0.25	1	1	0	0	0	0
........................................................................................TGGCGATCTGAGCGTTTTCG.................................................	20	3	8	0.13	1	0	0	0	0	1
...........CCCCTAACCGTTGCTACCAGT.............................................................................................................................	21	2	11	0.09	1	0	1	0	0	0
...........GGCCTAACCGTTGCTACCAG..............................................................................................................................	20	0	11	0.09	1	1	0	0	0	0
....................................CCGGTGGAAGCGCTTATCG......................................................................................................	19	3	13	0.08	1	1	0	0	0	0
.....................................CGGTGGAAGCGCTTATCG......................................................................................................	18	3	20	0.05	1	0	0	1	0	0

#############################################################################################################################################################
TATGCGGTCCCGGCCTAACCGTTGCTACCAGTCCCACCGGTGGGAGCGCTCATCAACCCAACGATACAGCAGCTATCACCCGCGACGGTGGCGACCTGAGCCTTGTCGTCTCAGTGCGGCTCCCGGAGGCTCGCGATATGCGGCCTTAGGGTTCCGC
**************************************************....((..(((.....(((.......((((......)))).....)))....)))))**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V110
male body

V041
embryo

V056
head

........CCCGGCCTAACCGTTGCTACCAGT.............................................................................................................................

7.00

.....GGTCCCGGCCTAACCGTTGCTACCAGT.............................................................................................................................

2.00

......GTCCCGGCCTAACCGTTGCTACCAGT.............................................................................................................................

1.75

........CCCGGCCTAACCGTTGCTACCATT.............................................................................................................................

1.00

.......TCCCGGCCTAACCGTTGCTACCAGT.............................................................................................................................

0.75

....CGGTCCCGGCCTAACCGTTGCTACCAGT.............................................................................................................................

0.75

..........................................GGAGCGCTCATCAACCCAACGATACAGGA......................................................................................

0.50

...........................................GAGCGCTCATCAACCCAACGATACAGCA......................................................................................

0.50

................................................................................................TGAGCCTTGTCGTCTCAGTGCGGCT....................................

0.50

.............................................GCGCTCATCAACCCAACGATACAGC.......................................................................................

0.50

.........CCGGCCTAACCGTTGCTACCAGT.............................................................................................................................

0.50

.............................................................................................................................GAGGCTCGCGATATGCGGCCTTAGGGT.....

0.25

...................................................................................CACGGTGGCGACCTGAGCCTTGTCGT................................................

0.25

...........................................................................................................................CGGAGGCTCGCGATATGCGGCCTT..........

0.25

........CCCGGCCTAACCGTTGCTACTAGT.............................................................................................................................

0.25

.........................................................................................GGCGACCTGAGCCTTGTCGTCTCAGTG.........................................

0.25

..............................................................................................................................AGGCTCGCGATATGCGGCCTTAGGGT.....

0.25

.........CCGGCCTAACCGTTGCTACCATT.............................................................................................................................

0.25

.....GGTCCCGGCCTAACCGTTGCTACCAGTC............................................................................................................................

0.25

.....GGTCCCGGCCTAACCGTTGCTACCA...............................................................................................................................

0.25

.........................................................................................GGCGACCTGAGCCTTGTCGTCTCAGT..........................................

0.25

............................................................................CACCCGCGACGGTGGCGACCT............................................................

0.25

...............................................................................................CTGAGCCTTGTCGTCTCAGTGCGGCT....................................

0.25

..............................................................................................CCTGAGCCTTGTCGTCTCAGTGCGGCT....................................

0.25

........CCCGGCCTAACCGTTGCTACCAGTCCC..........................................................................................................................

0.25

..................CCGTTGCTACCAGTCCCA.........................................................................................................................

0.25

......GTCCCGGCCTAACCGTTGCTAACAGT.............................................................................................................................

0.25

.....GGTCCCGGCCTAACCGTTGCTACC................................................................................................................................

0.25

.......TCCCGGCCTAACCGTTGCTACCAG..............................................................................................................................

0.25

........................................................................................TGGCGATCTGAGCGTTTTCG.................................................

0.13

...........CCCCTAACCGTTGCTACCAGT.............................................................................................................................

0.09

...........GGCCTAACCGTTGCTACCAG..............................................................................................................................

0.09

....................................CCGGTGGAAGCGCTTATCG......................................................................................................

0.08

.....................................CGGTGGAAGCGCTTATCG......................................................................................................

0.05

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6353:43387-43543 +	dmo_532	ATACGCCAGGGCCGGATTGGCAACGATGGTCAGGGTGGCCACCCTCGCGAGTAGTTGGGTTGCTATGTCGTCGATAGTGGGCGCTGCCACCGCTGGACTCGGAACAGCAGAGTCACGCCGAGGGCCTCCGAGCGCTATACGCCGGAATCCCAAGGCG

Species

Coordinate

Alignment

droMoj3

scaffold_6353:43387-43543 +

dmo_532

ATACGCCAGGGCCGGATTGGCAACGATGGTCAGGGTGGCCACCCTCGCGAGTAGTTGGGTTGCTATGTCGTCGATAGTGGGCGCTGCCACCGCTGGACTCGGAACAGCAGAGTCACGCCGAGGGCCTCCGAGCGCTATACGCCGGAATCCCAAGGCG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

ATACGCCAGGGCCGGATTGGCAACGATGGTCAGGGTGGCCACCCTCGCGAGTAGTTGGGTTGCTATGTCGTCGATAGTGGGCGCTGCCACCGCTGGACTCGGAACAGCAGAGTCACGCCGAGGGCCTCCGAGCGCTATACGCCGGAATCCCAAGGCG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................GCTATGTCGTCGATAGTGGGCGC.........................................................................	23	4	14.25	57	44	1	1	0	8	3
.............................................................GCTATGTCGTCGATAGTGGGC...........................................................................	21	4	13.75	55	24	17	0	0	4	10
..................................................................................................TCGGAACAGCAGAGTCACGCCGAGGGC................................	27	4	4.50	18	13	0	0	0	5	0
.............................................................GCTATGTCGTCGATAGTGGGCG..........................................................................	22	4	3.50	14	14	0	0	0	0	0
..................................................................................................TCGGAACAGCAGAGTCACGCCGAGGGCC...............................	28	4	3.25	13	4	0	0	0	9	0
..................................................................................................TCGGAACAGCAGAGTCACGCCGAGG..................................	25	4	2.50	10	9	0	0	0	1	0
.............................................................GCTATGTCGTCGATAGTGGGCGCT........................................................................	24	4	2.50	10	8	0	0	0	1	1
.............................................................GCTATGTCGTCGATAGTGGG............................................................................	20	4	2.00	8	7	0	0	0	0	1
.............................................................GCTATGTCGTCGATAGTGGGCGCTGC......................................................................	26	4	1.75	7	7	0	0	0	0	0
.............................................................GCTATGTCGTCGATAGTGGGCGCTG.......................................................................	25	4	1.75	7	7	0	0	0	0	0
..............................................................CTATGTCGTCGATAGTGGGCGC.........................................................................	22	4	1.25	5	5	0	0	0	0	0
.............................................................GCTATGTCGTCGATAGTGG.............................................................................	19	4	0.75	3	3	0	0	0	0	0
.............................................................................................TGGACTCGGAACAGCAGAGTCACGCCG.....................................	27	4	0.75	3	3	0	0	0	0	0
.............................................................................................TGGACTCGGAACAGCAGAGTCACGCC......................................	26	4	0.50	2	1	0	0	0	1	0
..................................................................................................TCGGAACAGCAGAGTCACGCCGAGGG.................................	26	4	0.50	2	2	0	0	0	0	0
..............................................................CTATGTCGTCGATAGTGGGC...........................................................................	20	4	0.50	2	2	0	0	0	0	0
...................................................................................................CGGAACAGCAGAGTCACGCCGAGGGC................................	26	4	0.50	2	2	0	0	0	0	0
.............................................................................................TGGACTCGGAACAGCAGAGTCACGCCGAG...................................	29	4	0.25	1	1	0	0	0	0	0
..ACGCCAGGGCCGGATTGGCA.......................................................................................................................................	20	4	0.25	1	1	0	0	0	0	0
.............................................................GCTATGTCGTCGATAGTGGGCGT.........................................................................	23	4	0.25	1	1	0	0	0	0	0
.............................................................................................TGGACTCGGAACAGCAGAGTCACGCCGT....................................	28	4	0.25	1	1	0	0	0	0	0
.......AGGGCCGGATTGGCAACGATGG................................................................................................................................	22	4	0.25	1	1	0	0	0	0	0
................................................................................................................TCACGCCGAGGGCCTCCGAGCGCT.....................	24	4	0.25	1	1	0	0	0	0	0
..................................................................................................TCGGAACAGCAGAGTCACGCCG.....................................	22	4	0.25	1	1	0	0	0	0	0
........................................................................................................CAGCAGAGTCACGCCGAGGGCCTCCGAG.........................	28	4	0.25	1	1	0	0	0	0	0
.............................................................GCTATGTCGTCGATAGTGGGCGCTGCC.....................................................................	27	4	0.25	1	1	0	0	0	0	0
..................................................................................................TCGGAACAGCAGAGTCACGCCGAG...................................	24	4	0.25	1	1	0	0	0	0	0
.............................................................GCTATGTCGTCGATAGTGGGCC..........................................................................	22	4	0.25	1	1	0	0	0	0	0
.........................................................................................................AGCAGAGTCACGCCGAGGGCCTCCGA..........................	26	4	0.25	1	1	0	0	0	0	0
.............................................................GCTATGTCGTCGATAGTG..............................................................................	18	4	0.25	1	1	0	0	0	0	0
..................................................................................................TCGGAACAGCAGAGTCACGCCGAGGGCCT..............................	29	4	0.25	1	1	0	0	0	0	0
........................................................................................................................AGGGCCTCCGAGCGCTATACGCCGG............	25	4	0.25	1	1	0	0	0	0	0
..............................................................CTATGTCGTCGATAGTGGGCGCT........................................................................	23	4	0.25	1	1	0	0	0	0	0
..............................................................CTATGTCGTCGATAGTGGGCGCTGC......................................................................	25	4	0.25	1	1	0	0	0	0	0
..................................................................GTCGTCGATAGTGGGCGCTGCC.....................................................................	22	4	0.25	1	1	0	0	0	0	0
..............................................................................................GGACTCGGAACAGCAGAGTCACGCC......................................	25	4	0.25	1	1	0	0	0	0	0
...................................................................TCGTCGATAGTGGGCGCTGCC.....................................................................	21	4	0.25	1	0	0	0	0	1	0
...................................................................................................CGGAACAGCAGAGTCACGCCGAGGGCC...............................	27	4	0.25	1	1	0	0	0	0	0

-12.0	-11.6	-11.5	-11.4

dmo_532

scaffold_6353:43437-43493 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads