ID:

dmo_529

 Coordinate:

scaffold_6328:4234189-4234339 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.8 -7.5 -7.2 -7.2

Flybase annnotation

CDS [Dmoj\GI16491-cds]; exon [dmoj_GLEANR_17208:7]; intron [Dmoj\GI16491-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+
mature
  1. dmo_529  scaffold_6328:4234242-4234263 +
  2. scaffold_6540:21810443-21810464 +
  3. scaffold_6680:5381034-5381055 -
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGTGTGTGTACGTACTAACCACATATGAAGACCACAGACAAAAACAAAAACCCTAAACAACCAGAACAACAATAACAACAACAAAAACAACAACAACAACAACAACAACCAGAACAACAACAACAACAATAGCAACAAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCTATATGACGTATAGGTGGCAGCACCAGCCTACTCAGCGGCGTCATAGTGCCCGGTGGTAGTGAC
**************************************************..............................................................................................................(((.((((........................))))..)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V056
head
........................................................................................................................................................................................................................TTCTCAGCGACGTCATAGT................ 19 2 3 1.00 3 3 0 0
.......GTACGTACTAACCACATATGAAGAC........................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0
....................................................................................................................................................................................................TATAGGTTGCAGCACAAGC.................................... 19 2 4 0.50 2 0 2 0
............................................................................AACAACAAAAACAAAAAAAACACCAACAACAACCA............................................................................................................................................ 35 3 2 0.50 1 0 0 1
.......................................................................................................AACAACCAGAACAACAACAACA.............................................................................................................................. 22 0 3 0.33 1 1 0 0
......................................................................................................CAACAACCAGAACAACAACAAC............................................................................................................................... 22 0 3 0.33 1 1 0 0
........................................................................................................................................................................................................................TTCTCAGCGGCTTCATAGT................ 19 2 3 0.33 1 1 0 0
..................................................................................................................................................................................................GGTATAGGTGGCATCAACAGC.................................... 21 3 5 0.20 1 1 0 0
.............ACTAACGACATACAAAGACC.......................................................................................................................................................................................................................... 20 3 11 0.18 2 1 1 0
...............................................................................................................GAACAACAACAACAACAAT......................................................................................................................... 19 0 20 0.05 1 1 0 0
......................................................................................................CAACAACCAGAACAACAACAACAACAACA........................................................................................................................ 29 1 20 0.05 1 1 0 0

Anti-sense strand reads

ACACACACATGCATGATTGGTGTATACTTCTGGTGTCTGTTTTTGTTTTTGGGATTTGTTGGTCTTGTTGTTATTGTTGTTGTTTTTGTTGTTGTTGTTGTTGTTGTTGGTCTTGTTGTTGTTGTTGTTATCGTTGTTTCAGTTTATATGTCTTTTCAGTGATAACAGAGAAAAAAAGAAGAGAAGGATATACTGCATATCCACCGTCGTGGTCGGATGAGTCGCCGCAGTATCACGGGCCACCATCACTG
**************************************************..............................................................................................................(((.((((........................))))..)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 V110
male body		 M046
female body
 V049
head
 V041
embryo
.............TGATTGCTGTATGTTTCTGG.......................................................................................................................................................................................................................... 20 3 11 6.91 76 0 48 25 3 0
..........................................TTGTTTTAGGGATGTGATGGT............................................................................................................................................................................................ 21 3 2 2.00 4 4 0 0 0 0
..........................................TTGTTTTAGGGATCTGATGGT............................................................................................................................................................................................ 21 3 6 1.17 7 7 0 0 0 0
.......................................TTGTTGTTTTTGGGATCTGATGGT............................................................................................................................................................................................ 24 3 1 1.00 1 0 0 0 0 1
............................................GTTTTTGGGATGTGATGGT............................................................................................................................................................................................ 19 2 1 1.00 1 1 0 0 0 0
.........................................TTTGTTTTAGGGATCTGATGGT............................................................................................................................................................................................ 22 3 2 0.50 1 1 0 0 0 0
..........................................TTGTTTTGGGGATGTGATGGT............................................................................................................................................................................................ 21 3 2 0.50 1 0 0 0 1 0
..........................................TTGTTTTTGGGCTCTGATGGT............................................................................................................................................................................................ 21 3 2 0.50 1 1 0 0 0 0
..........................................TTGTTTTTGTGATTTGGTGGT............................................................................................................................................................................................ 21 2 3 0.33 1 0 0 0 1 0
.........................................TTTGTTTTTGGGATGTGGGGG............................................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 1 0
..........................................TTGTTTTTGGGATCTGCAGGT............................................................................................................................................................................................ 21 3 3 0.33 1 0 0 0 1 0
.......................................TTGTTGTTTTTGTGATTTGATGGT............................................................................................................................................................................................ 24 3 5 0.20 1 0 0 0 0 1
...........................................TGTTTTAGGGATGTGATGGT............................................................................................................................................................................................ 20 3 8 0.13 1 0 0 0 1 0
.......................................TTTTTGTTTTTGGCATTTTTAGGT............................................................................................................................................................................................ 24 3 13 0.08 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6328:4234139-4234389 + dmo_529 TGTGTGTG-TACGTACT------------------------------AACCACATATGAA--GAC-----CACAGACAAAAA--CAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTAAACAACCAGAACAACAATAACAACAACA-AAAACAACAA--CA--ACAACAAC-A------------ACAACC-------------------------A-----------------------GAACA--ACAACAACAAC-AATAG---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-----AT-ATGA-CG--TATAGGTGGCAGCACC---------AGCCTACTCAGCGG---CGTCATAGTGCCCGGTGGT--------------AG---TGAC
droVir3 scaffold_13042:5028246-5028513 + dvi_14802 TGTGTGTG-TGC----AAAGTCACGAACTAACAGACAAGC----------------------------------------------------ATGAAATGCATACAAATCA----------------A--------------------------------------------------------------------------------------------------------ATAACAAA-------AACA-------------------------------------AACTAAACAGCAACAACAACAACAACAACAGCA-GCAACCACAA--AA--ACAGCAAC-A------------ACCACA-------------------------A-----------------------CAACA--GCAACAACAAC-AACAG---------AA---AC-----------------------------------------------CAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-----AT-ATGA-CG--TATAGGTGGCAGCACC---------AGCCTACTCGGCGG---CGTCATAGTGCCCGGCGGT--------------AG---TGAC
droGri2 scaffold_8625:289-552 + AATGCGATTTATTTATT------------------------------AGCA-----------------------------------------------C-----C----------------CCA-CAGCAAGCGCAC--------------------------CAAAAGCA------------------GCTGCAACAACAACAGCGGC---------------------------------------------------------------------------AG---------------------------------CA-GCAAAATCAACAA-----------C----------------------TGCAACAAC----A--ACAACAG-CAA--CAACAACA-------------------------CC-AACAA------CACCAACAAGAAAAACAGCAGCAATCGCAACTATTACTTTAAAAAATGCCGCGCTTA---TTTG-GATAAACATAAATCCA-----------------------------AGCG------------------ACACAAACACA------ATATCCCACACACTCGATCCGAAACCGAGCCGAGTAAT-----TTGATATTCAG---TGAG
droWil2 scf2_1100000004963:4588036-4588266 + AAA-------------C----------------GA---------------AAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACAACA----------------ACA----------------ACAACAGAACAACAATAA-------------A-AAATCAAAAACAA--ATTA--AACAAT-AA--------------------------------AA--ACAAAAA-AAA--AAAAAAATTAAATAAAATAAAA--ACCAA---ACA-AG-AA---------AA---AA-----------------------------------------------ATAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-----AT-ATGACCG--TATAGGTGGCAGCACCG------GCAGCCTACTTGGCGG---CGTCATAGT---TGGTGCA--------------AG---TGGC
dp5 4_group3:1805998-1806198 - ACC-------------A-------------------------------ACAACAAA----------------------------------------------------GCG----------------A------------------AC--------------------------------------------------------------------------------------TA-------CAACAACA----------------ACTACAACAACAACT------------ACAACAACAA---------CTACAACA-ACAACACCAA--AG--CCAACAAC-AAAACGTACAACTACTACC-------------------------A------------CA-------------------------AC-AACAACACCAAAACCAACAACAAAAACAACCACAAGACGTACA-------------------------ACAACTACAACAACAAGAAAGCCT-----------------------------ACAACA-ACAACCA--CAAAGAGGACAAC--------------------------------------------------------------------AAC
droPer2 scaffold_820:5013-5286 - CAC-------------AA-------------------------------AGA------------CAGA--CACAGACACAGACACAGACACCCTAAAACACCCACAAGACA----------------A--------------------------------------------------------------------------------------------------------A-GACAAA-------ACAAAACTAAAACATATACG-----------------AAACAACT-----ACAAGAG-------------A-AAA-----ACCAA--AC---------------------------------------------AA-------------ACAAACAAAC---------CAAAA--ACAAAAAAATA-AATAA---------CA---AC-----------------------------------------------AAAGTCAATTATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCC--TCTAT-ATGACCGTGTTTAGGTGGCAGCACCGGTGGTGGCAGCCTACTCGGCGG---CGTCATAGTGCCCGGCGGT--------------AG---TGGC
droAna3 scaffold_12929:1411062-1411309 + dan_794 TT---------------------------------------------AACA-----------------------------------------------A-----C----------------ACAACAACAAGAACAAAAATACTAGACTAGACATGA-------------------------------------CA---CTA-T---AC-----------------------CTCACA------------------------------------------------AAAACTAAACAAAAC-----------------------------AA--------------AG---------------------------------------AAAAA-CAA--AAACAAAGCAAAAAAAAAAAAAATACCAA---AAA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTT-----CTAT-ATGACCG--TATAGGTGGCAGCACCG------GCAGCCTACTTGGCGG---CGTCATAGTGCCCGGTGGC--------------GGTACTAGT
droBip1 scf7180000396380:341082-341287 + TAA-------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCACAAA--------------------------------------------ACAAAACTAAAAACAAAGAA-------------A-AACAAAAAACAAA--GA------------------------------------------AAGAAAAAAAAATAA---CCAAAAAAAA-------------------------AT-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-----AT-ATGACCG--TATAGGTGGCAGCACCG------GCAGCCTACTCGGCGG---CGTCATAGTGCCCGGTGGC--------------GGTACTAGT
droKik1 scf7180000302544:1462761-1462985 + CAC-------------AA-ATCACATACCAACAGACAGAC-----------------------------------------------------------------------------------------------------------------AT---------------------------------------------------------------------------AC----------------ACT-------------------------------------TACTAAACAACAATTACTACAATTAC---A-AACAAGAAACAGA--AA----------------------------------------------------AAAA-CAG--AAAAAATA-------------------------AT-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCTATTTTTT-ATGACCG--TTTAGGTGGCAACACCG------GCAGCCTACTCGGCGG---CGTCATAGTGCCCGGCGGT--------------AG---TGGC
droFic1 scf7180000454072:1555981-1556281 - CATG-----------------------------GA-----------------------------CAGAAACACTGACACCGACAGAGTCATACTAACAC-----CAAGACACCATGACATCATG---A------------------CCTTGACGGGACCACA-C--TGAATG-TACTACA---------ACT---ACAACAACTACAACTA----------------------------C-----------------------------------AAGAACAACACACAACTAAACAAC------------------------------CAA--AC-A---------------------------------AAAACGA---AA--ACAAAAA-CAA--AAACAAAC-------------------------CA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT---CTAT-ATGACCG--TATAGGTGGCAGCACCG------GCAGCCTGCTGGGCGG---CGTCATAGTGCCCGGCGGT--------------AG---TGGC
droEle1 scf7180000490566:118602-118840 + CAC-------------A----------------------------CTAACA-----------------------------------------------C-----C----------------ACA---A------------------ACAAAACACGAACAGAACAAAAAAA------------------ACTACCACTACTACTCCA---A----------------------------C--------------------------------------------ACACAACTAAACAACAA---------------------------------------------A----------------------TGAAAACGA----A--ACAAAAA-CAA--AAACAAAC-------------------------CA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT---CTAT-ATGACCG--TATAGGTGGCAGCACCG------GCAGCCTACTCGGCGG---CGTTATAGTGCCCGGCGGT--------------AG---TGGC
droRho1 scf7180000780290:129526-129764 + ATC-------------C----------------GACAGAGACACACTGAAA-----------------------------------------------C-----G----------------AAG---A------------------ACTAGACACGAACAAAAC------A------------------ACTACCAAAACTACTCAA---A----------------------------C--------------------------------------------ACACAACTAAACAACAA---------------------------------------------AG------------AAAACC---------------------A--AA-CAA--AAACAAAC-------------------------CAAAATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT---CTAT-ATGACCG--TATAGGTGGCAGCACCG------GCAGCCTACTCGGCGG---CGTTATAGTGCCCGGCGGT--------------AG---TGGC
droBia1 scf7180000301760:4132932-4133151 + TAC-------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCACTAC---AACCA----------------------------CACGCAACAACA----------------ACAACAACAACAACAACA-GCAACTAAACAACAAGAA-------------G---ACC-----CAA--AC---------------------------------------------AA-------------ACAA-------------------------------AC-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-TTCTAA-ATGACCG--TTTAGGTGGCAGCACCG------GCAGCCTACTCGGCGG---CGTCATAGTGCCCGGCGGT---AG----T----GGTGGTGGC
droTak1 scf7180000415704:1132104-1132365 + ACA-------------C----------------CA---------------CACACAAGAAGAGAC-----CACGAAAGTGAA---------------------------------------------A------------------ACAAGACATGAACA-----ACTACC------------------ACTACCACTACTACAACAACTA----------------------------------------------------------------------------CCACCAAACACCAC---------------------------------------------A----------------------AGA----------AAAAACACCAACA---AACCAAAC-------------------------CA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTT-TTTCTTCTCTTCCTTTTCTAAAATGACCG--TCTAGGTGGCAGCACCG------GCAGCCTAATTGGTGG---CGTCATTGTGCCCGGCGGTGGTAGTGG-T----GGTGGTGGC
droEug1 scf7180000408994:260940-261162 + TAC-------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT------ACACACACACACACTCACACAC------AC--------------------------------------------CCACAACTAAACAACAG---------------------------------------------AG------------AATACGAAAA-CA-----AACAAAAACAAAAA-CAA--AAACAAAC-------------------------CA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT--TCTAT-ATGACCG--TTTAGGTGGCAGCACCG------GCAGCCTACTCGGCGG---CGTCATAGTGCCCGGCGGT--------------AGTGGTGGC
dm3 chrX:1541231-1541453 + TAC-------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACTAC---AACTA----------------------------C--------------------------------------------ACACAACTAAACAACAAGAA-------------A-CAACCCAAACCAA--AC-A----------------------------------------AACAAA--CAAACAA---ACAAACAAAC--------------CAACCAA---ACA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-TTCTAA-ATGACCG--TTTAGGTGGCAGCACCG------GCAGCCTACTCAGTGG---CGTCATTGTGCCCGGCGGT--------------AGTGGTGGC
droSim2 x:1408575-1408792 + TAC-------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACTACTCCAACTA----------------------------C--------------------------------------------ACACAACTAAACAACAAGAA-------------A-CAACCCAAACCAA--AC-A----------------------------------------AACAAA--CAAACA-----------AAC--------------CAACCAA---CCA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-TTCTAA-ATGACCG--TTTAGGTGGCAGCACCG------GCAGCCTACTCAGTGG---CGTCATTGTGCCCGGCGGT--------------AGTGGTGGC
droSec2 scaffold_10:1346974-1347220 + GAA-------------C----------------------------------------------------------------------------------------------------------------------------------------------GCA-C--CGACTGCTACAGCAACTACTACTATTACTACTACTACTCCAACTA----------------------------C--------------------------------------------ACACAACTAAACAACAAGAA-------------A-CAACCCAAACCAA--AC---------------------------------------------AA-------------ACAAACAAAC--------------CAACCAA---CCA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-TTCTAA-ATGACCG--TTTAGGTGGCAGCACCG------GCAGCCTACTCAGTGG---CGTCATTGTGCCCGGCGGT--------------AGTGGTGGC
droYak3 X:1393989-1394248 + CAT-------------T------------------------------AACA-----------------------------------------------C-----C----------------GCAACAA------------------ACTAGACGTGAACGCA-C--AGACTGCTACA------------ACT---ACTACTACT---ACCA----------------------------C--------------------------------------------ACACAACTAAACAACAAGAA-------------A-CAACCCAAACCAA--ACCA----------------------------------------AACAAA--CAAACAA---ACAAACAAAC-------------------------CA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-TTCTAA-ATGACCG--TTTAGGTGGCAGCACCG------GCAGCCTACTCAGTGG---CGTCATTGTGCCCGGCGGT--------------AGTGGTGGC
droEre2 scaffold_4644:1525829-1526055 + TAC-------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACTACTACTACTCCAACTA----------------------------C--------------------------------------------ACACAACTAAACAACAAGAA-------------A-CAACCCAAACCAA--ACCA----------------------------------------AACAAAACCAAACAA---ACAAACAAAC-------------------------CA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-TTCTAA-ATGACCG--TTTAGGTGGCAGCACCG------GCAGCCTACTCAGTGG---CGTCATTGTGCCCGGCGGT--------------AGTGGTGGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TGTGTGTG-TACGTACT------------------------------AACCACATATGAA--GAC-----CACAGACAAAAA--CAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTAAACAACCAGAACAACAATAACAACAACA-AAAACAACAA--CA--ACAACAAC-A------------ACAACC-------------------------A-----------------------GAACA--ACAACAACAAC-AATAG---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-----AT-ATGA-CG--TATAGGTGGCAGCACC---------AGCCTACTCAGCGG---CGTCATAGTGCCCGGTGGT--------------AG---TGACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......G-TACGTACT------------------------------AACCACATATGAA--GAC-----.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...........................................................................................................................................................................................................................................................................................................................................................A------------ACAACC-------------------------A-----------------------GAACA--ACAACAACA................................................................................................................................................................................................................................2230.331100000
.........................................................................................................................................................................................................................................................................................................................................................C-A------------ACAACC-------------------------A-----------------------GAACA--ACAACAAC.................................................................................................................................................................................................................................2230.331100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GAACA--ACAACAACAAC-AAT..........................................................................................................................................................................................................................19200.051100000
droVir3
TGTGTGTG-TGC----AAAGTCACGAACTAACAGACAAGC----------------------------------------------------ATGAAATGCATACAAATCA----------------A--------------------------------------------------------------------------------------------------------ATAACAAA-------AACA-------------------------------------AACTAAACAGCAACAACAACAACAACAACAGCA-GCAACCACAA--AA--ACAGCAAC-A------------ACCACA-------------------------A-----------------------CAACA--GCAACAACAAC-AACAG---------AA---AC-----------------------------------------------CAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-----AT-ATGA-CG--TATAGGTGGCAGCACC---------AGCCTACTCGGCGG---CGTCATAGTGCCCGGCGGT--------------AG---TGACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................CTAAACAGCAACAACAACAAC........................................................................................................................................................................................................................................................................................................................................................2140.251000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................C-A------------ACCACA-------------------------A-----------------------CAACA--GCAACAACAAC-.............................................................................................................................................................................................................................2570.141000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................A--GCAACAACAAC-AACAG---------AA---AC-----------------------------------------------.........................................................................................................................................................2180.131001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGCCCGGCGGT--------------AG---CA..1880.131001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................ACAACAACAACAACAGCA-GCAAC........................................................................................................................................................................................................................................................................................................................................23200.102001000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CAACAACAACAACAACAGCA-G............................................................................................................................................................................................................................................................................................................................................21200.102002000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................AAACAGCAACAACAACAAC........................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................AGCAAC-A------------ACCACA-------------------------A-----------------------CAACA--.........................................................................................................................................................................................................................................19200.051000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................AACAACAACAACAACAGCA-G............................................................................................................................................................................................................................................................................................................................................20200.051000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................ACAACAACAACAACAGCA-GCA..........................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000010000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACAACAACAACAGCA-GCA..........................................................................................................................................................................................................................................................................................................................................19200.051000000000000010000000000000000000000000000000000000000000000000
droGri2
AATGCGATTTATTTATT------------------------------AGCA-----------------------------------------------C-----C----------------CCA-CAGCAAGCGCAC--------------------------CAAAAGCA------------------GCTGCAACAACAACAGCGGC---------------------------------------------------------------------------AG---------------------------------CA-GCAAAATCAACAA-----------C----------------------TGCAACAAC----A--ACAACAG-CAA--CAACAACA-------------------------CC-AACAA------CACCAACAAGAAAAACAGCAGCAATCGCAACTATTACTTTAAAAAATGCCGCGCTTA---TTTG-GATAAACATAAATCCA-----------------------------AGCG------------------ACACAAACACA------ATATCCCACACACTCGATCCGAAACCGAGCCGAGTAAT-----TTGATATTCAG---TGAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................................................................................................................................................................................................................................................................................A-----------C----------------------TGCAACAAC----A--ACAACAG-CAA--.................................................................................................................................................................................................................................................................2290.11110
.................................................................................................................................................................................................................................................................................................................................................................................TGCAACAAC----A--ACAACAG-CAA--CAAC.............................................................................................................................................................................................................................................................24160.06110
..........................................................................................................................................................................................................................................................................................................................................AACAA-----------C----------------------TGCAACAAC----A--ACA...........................................................................................................................................................................................................................................................................19200.05110
droWil2
AAA-------------C----------------GA---------------AAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACAACA----------------ACA----------------ACAACAGAACAACAATAA-------------A-AAATCAAAAACAA--ATTA--AACAAT-AA--------------------------------AA--ACAAAAA-AAA--AAAAAAATTAAATAAAATAAAA--ACCAA---ACA-AG-AA---------AA---AA-----------------------------------------------ATAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-----AT-ATGACCG--TATAGGTGGCAGCACCG------GCAGCCTACTTGGCGG---CGTCATAGT---TGGTGCA--------------AG---TGGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
ACC-------------A-------------------------------ACAACAAA----------------------------------------------------GCG----------------A------------------AC--------------------------------------------------------------------------------------TA-------CAACAACA----------------ACTACAACAACAACT------------ACAACAACAA---------CTACAACA-ACAACACCAA--AG--CCAACAAC-AAAACGTACAACTACTACC-------------------------A------------CA-------------------------AC-AACAACACCAAAACCAACAACAAAAACAACCACAAGACGTACA-------------------------ACAACTACAACAACAAGAAAGCCT-----------------------------ACAACA-ACAACCA--CAAAGAGGACAAC--------------------------------------------------------------------AACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAAGACGTACA-------------------------ACAACTACA................................................................................................................................................2411.0010000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAACAACCACAAGACGTA....................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACAAGACGTACA-------------------------ACAACTAC.................................................................................................................................................2411.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAGACGTACA-------------------------ACAACTA..................................................................................................................................................2011.0010000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAAGAAAGCCT-----------------------------ACAACA-AC...........................................................................................2411.0010001000000
................A-------------------------------ACAACAAA----------------------------------------------------GCG----------------A------------------AC--------------------------------------------------------------------------------------TA-------CA..........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................................................................................................................................................................................................A-ACAACACCAA--AG--CCAACAAC-AA..................................................................................................................................................................................................................................................................................................................2311.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AACAACACCAAAACCAACAACA.......................................................................................................................................................................................................2320.5010100000000
...........................................................................................................................................................................................................................................A-------CAACAACA----------------ACTACAACAACA........................................................................................................................................................................................................................................................................................................................................................................................21140.0710100000000
......................................................................................................................................................................................................................................................................................................ACAACAACAA---------CTACAACA-ACA..........................................................................................................................................................................................................................................................................................................................................21140.0710100000000
..............................................................................................................................................................................................................................................................................ACAACAACAACT------------ACAACAACA................................................................................................................................................................................................................................................................................................................................................................21140.0710100000000
droPer2
CAC-------------AA-------------------------------AGA------------CAGA--CACAGACACAGACACAGACACCCTAAAACACCCACAAGACA----------------A--------------------------------------------------------------------------------------------------------A-GACAAA-------ACAAAACTAAAACATATACG-----------------AAACAACT-----ACAAGAG-------------A-AAA-----ACCAA--AC---------------------------------------------AA-------------ACAAACAAAC---------CAAAA--ACAAAAAAATA-AATAA---------CA---AC-----------------------------------------------AAAGTCAATTATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCC--TCTAT-ATGACCGTGTTTAGGTGGCAGCACCGGTGGTGGCAGCCTACTCGGCGG---CGTCATAGTGCCCGGCGGT--------------AG---TGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TT---------------------------------------------AACA-----------------------------------------------A-----C----------------ACAACAACAAGAACAAAAATACTAGACTAGACATGA-------------------------------------CA---CTA-T---AC-----------------------CTCACA------------------------------------------------AAAACTAAACAAAAC-----------------------------AA--------------AG---------------------------------------AAAAA-CAA--AAACAAAGCAAAAAAAAAAAAAATACCAA---AAA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTT-----CTAT-ATGACCG--TATAGGTGGCAGCACCG------GCAGCCTACTTGGCGG---CGTCATAGTGCCCGGTGGC--------------GGTACTAGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAATACCAA---AAA-A............................................................................................................................................................................................................................2220.501010000
........................................................................................................................................................................................................................................................................................................AAAAC-----------------------------AA--------------AG---------------------------------------AAAAA-CAA--AA...............................................................................................................................................................................................................................................................1930.331010000
....................................................................................................................................................................................................................................................................................................AAACAAAAC-----------------------------AA--------------AG---------------------------------------AAAAA-......................................................................................................................................................................................................................................................................1840.251010000
...........................................................................................................................................................................................................................................................................................................................................................................................................A--AAACAAAGCAAAAAAAAAA..............................................................................................................................................................................................................................................2070.141010000
droBip1
TAA-------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCACAAA--------------------------------------------ACAAAACTAAAAACAAAGAA-------------A-AACAAAAAACAAA--GA------------------------------------------AAGAAAAAAAAATAA---CCAAAAAAAA-------------------------AT-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-----AT-ATGACCG--TATAGGTGGCAGCACCG------GCAGCCTACTCGGCGG---CGTCATAGTGCCCGGTGGC--------------GGTACTAGTSizeHit CountTotal NormTotal
No Reads
droKik1
CAC-------------AA-ATCACATACCAACAGACAGAC-----------------------------------------------------------------------------------------------------------------AT---------------------------------------------------------------------------AC----------------ACT-------------------------------------TACTAAACAACAATTACTACAATTAC---A-AACAAGAAACAGA--AA----------------------------------------------------AAAA-CAG--AAAAAATA-------------------------AT-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCTATTTTTT-ATGACCG--TTTAGGTGGCAACACCG------GCAGCCTACTCGGCGG---CGTCATAGTGCCCGGCGGT--------------AG---TGGCSizeHit CountTotal NormTotal
No Reads
droFic1
CATG-----------------------------GA-----------------------------CAGAAACACTGACACCGACAGAGTCATACTAACAC-----CAAGACACCATGACATCATG---A------------------CCTTGACGGGACCACA-C--TGAATG-TACTACA---------ACT---ACAACAACTACAACTA----------------------------C-----------------------------------AAGAACAACACACAACTAAACAAC------------------------------CAA--AC-A---------------------------------AAAACGA---AA--ACAAAAA-CAA--AAACAAAC-------------------------CA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT---CTAT-ATGACCG--TATAGGTGGCAGCACCG------GCAGCCTGCTGGGCGG---CGTCATAGTGCCCGGCGGT--------------AG---TGGCSizeHit CountTotal NormTotal
No Reads
droEle1
CAC-------------A----------------------------CTAACA-----------------------------------------------C-----C----------------ACA---A------------------ACAAAACACGAACAGAACAAAAAAA------------------ACTACCACTACTACTCCA---A----------------------------C--------------------------------------------ACACAACTAAACAACAA---------------------------------------------A----------------------TGAAAACGA----A--ACAAAAA-CAA--AAACAAAC-------------------------CA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT---CTAT-ATGACCG--TATAGGTGGCAGCACCG------GCAGCCTACTCGGCGG---CGTTATAGTGCCCGGCGGT--------------AG---TGGCSizeHit CountTotal NormTotal
No Reads
droRho1
ATC-------------C----------------GACAGAGACACACTGAAA-----------------------------------------------C-----G----------------AAG---A------------------ACTAGACACGAACAAAAC------A------------------ACTACCAAAACTACTCAA---A----------------------------C--------------------------------------------ACACAACTAAACAACAA---------------------------------------------AG------------AAAACC---------------------A--AA-CAA--AAACAAAC-------------------------CAAAATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT---CTAT-ATGACCG--TATAGGTGGCAGCACCG------GCAGCCTACTCGGCGG---CGTTATAGTGCCCGGCGGT--------------AG---TGGCSizeHit CountTotal NormTotal
No Reads
droBia1
TAC-------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCACTAC---AACCA----------------------------CACGCAACAACA----------------ACAACAACAACAACAACA-GCAACTAAACAACAAGAA-------------G---ACC-----CAA--AC---------------------------------------------AA-------------ACAA-------------------------------AC-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-TTCTAA-ATGACCG--TTTAGGTGGCAGCACCG------GCAGCCTACTCGGCGG---CGTCATAGTGCCCGGCGGT---AG----T----GGTGGTGGCSizeHit CountTotal NormTotal
No Reads
droTak1
ACA-------------C----------------CA---------------CACACAAGAAGAGAC-----CACGAAAGTGAA---------------------------------------------A------------------ACAAGACATGAACA-----ACTACC------------------ACTACCACTACTACAACAACTA----------------------------------------------------------------------------CCACCAAACACCAC---------------------------------------------A----------------------AGA----------AAAAACACCAACA---AACCAAAC-------------------------CA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTT-TTTCTTCTCTTCCTTTTCTAAAATGACCG--TCTAGGTGGCAGCACCG------GCAGCCTAATTGGTGG---CGTCATTGTGCCCGGCGGTGGTAGTGG-T----GGTGGTGGCSizeHit CountTotal NormTotal
No Reads
droEug1
TAC-------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT------ACACACACACACACTCACACAC------AC--------------------------------------------CCACAACTAAACAACAG---------------------------------------------AG------------AATACGAAAA-CA-----AACAAAAACAAAAA-CAA--AAACAAAC-------------------------CA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT--TCTAT-ATGACCG--TTTAGGTGGCAGCACCG------GCAGCCTACTCGGCGG---CGTCATAGTGCCCGGCGGT--------------AGTGGTGGCSizeHit CountTotal NormTotal
No Reads
dm3
TAC-------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACTAC---AACTA----------------------------C--------------------------------------------ACACAACTAAACAACAAGAA-------------A-CAACCCAAACCAA--AC-A----------------------------------------AACAAA--CAAACAA---ACAAACAAAC--------------CAACCAA---ACA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-TTCTAA-ATGACCG--TTTAGGTGGCAGCACCG------GCAGCCTACTCAGTGG---CGTCATTGTGCCCGGCGGT--------------AGTGGTGGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCCCGGCGGT--------------AGTGGT...2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTGGCAGCACCG------GCAGC........................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCT-TTCTAA-ATGACCG--TTT.................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGTGG---CGTCATTGTGCCC.............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ATGACCG--TTTAGGTGGCAGC.......................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGTCTCTTTTTTTCTTCT...........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG---CGTCATTGTGCCCGGCGG........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACTAC---AACTA----------------------------C--------------------------------------------ACACAACTAAACAA.....................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTCTTCCT-TTCTAA-.............................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGAAAAGTCACTATTGTC.........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................AAGAA-------------A-CAACCCAAACCAA--AC-..............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-ATGACCG--TTTAGGTGGCA.........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTGTGCCCGGCGGT--------------AGTG.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................CTACTAC---AACTA----------------------------C--------------------------------------------ACACAACT...........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCT-TTCTAA-ATGACCG--TTTA................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAA-ATGACCG--TTTAGGTGGC..........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCCGGCGGT--------------AGTGGTGGC2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGG---CGTCATTGTGCCCGGC..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................A-CAACCCAAACCAA--AC-A----------------------------------------AACAAA--CAAA.........................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCG--TTTAGGTGGCAGCAC.....................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTTTCTTCTCTTCCT-TTC.................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTGGCAGCACCG------GCAGCC.......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCT-TTCTAA-ATGACCG--TTTAGGTGGCAGC.......................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTGTGCCCGGCGGT--------------AGTGGTGG.2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTATTGTCTCTTTTTTTCTTCTCT.........................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGCAGCACCG------GCAGCCTAC....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTGTGCCCGGCGGT--------------AGTGGTGGC2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGG---CGTCATTGTGCCCGGCGGT--------------.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................CAAACCAA--AC-A----------------------------------------AACAAA--CAAACA.......................................................................................................................................................................................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................AAACAA---ACAAACAAAC--------------CA.........................................................................................................................................................................................................................................18160.1320000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AACAA---ACAAACAAAC--------------CAAC.......................................................................................................................................................................................................................................19100.1010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................A----------------------------------------AACAAA--CAAACAA---ACAAAC.............................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................AACAAA--CAAACAA---ACAAA..............................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................AA--AC-A----------------------------------------AACAAA--CAAACAA---AC.................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TAC-------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACTACTCCAACTA----------------------------C--------------------------------------------ACACAACTAAACAACAAGAA-------------A-CAACCCAAACCAA--AC-A----------------------------------------AACAAA--CAAACA-----------AAC--------------CAACCAA---CCA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-TTCTAA-ATGACCG--TTTAGGTGGCAGCACCG------GCAGCCTACTCAGTGG---CGTCATTGTGCCCGGCGGT--------------AGTGGTGGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GAA-------------C----------------------------------------------------------------------------------------------------------------------------------------------GCA-C--CGACTGCTACAGCAACTACTACTATTACTACTACTACTCCAACTA----------------------------C--------------------------------------------ACACAACTAAACAACAAGAA-------------A-CAACCCAAACCAA--AC---------------------------------------------AA-------------ACAAACAAAC--------------CAACCAA---CCA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-TTCTAA-ATGACCG--TTTAGGTGGCAGCACCG------GCAGCCTACTCAGTGG---CGTCATTGTGCCCGGCGGT--------------AGTGGTGGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CAT-------------T------------------------------AACA-----------------------------------------------C-----C----------------GCAACAA------------------ACTAGACGTGAACGCA-C--AGACTGCTACA------------ACT---ACTACTACT---ACCA----------------------------C--------------------------------------------ACACAACTAAACAACAAGAA-------------A-CAACCCAAACCAA--ACCA----------------------------------------AACAAA--CAAACAA---ACAAACAAAC-------------------------CA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-TTCTAA-ATGACCG--TTTAGGTGGCAGCACCG------GCAGCCTACTCAGTGG---CGTCATTGTGCCCGGCGGT--------------AGTGGTGGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TAC-------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACTACTACTACTCCAACTA----------------------------C--------------------------------------------ACACAACTAAACAACAAGAA-------------A-CAACCCAAACCAA--ACCA----------------------------------------AACAAAACCAAACAA---ACAAACAAAC-------------------------CA-AATAA---------CA---AC-----------------------------------------------AAAGTCAAATATACAGAAAAGTCACTATTGTCTCTTTTTTTCTTCTCTTCCT-TTCTAA-ATGACCG--TTTAGGTGGCAGCACCG------GCAGCCTACTCAGTGG---CGTCATTGTGCCCGGCGGT--------------AGTGGTGGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 10:31 PM