ID:

dmo_526

 Coordinate:

scaffold_6328:3953819-3953969 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-48.4 -48.3 -48.2

Flybase annnotation

exon [dmoj_GLEANR_16788:3]; CDS [Dmoj\GI16047-cds]; intron [Dmoj\GI16047-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+
mature
  1. dmo_526  scaffold_6328:3953832-3953851 -
  2. scaffold_6359:3060841-3060860 +
  3. scaffold_6500:2471891-2471910 -
  4. scaffold_6500:26550976-26550995 +
  5. scaffold_6540:31384495-31384514 -
  6. scaffold_6680:5780673-5780692 -
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGAGGCACAAAGGACAAGCTCGCATATTTTTCGTAGTTTCATGGAATTCCCGTTGGCTTTCTTGTTGCAGATGCCAGCTTTGACGGCAGCGATGGAACCGTGCCCTCACCAGCCCCCCAGCAGCTGGCCTACAATGTGCTCCGGCCGATACTGAAGTCGCAGCAGCACCAGACCCAGCAGCAGCAGCAACAAGAGCAGCAGAAGCTGCAGCACTTGCAGCAGTTGCAGAATGTGCAGCAAATGCAGCAGCA
**************************************************.....(((((((((((((...(((..(((.(((.((((.((.......)))))).)))..)))......((.(((((.........((((.((((..........)))).)))).........))))).)).))))))))))))).)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 M060
embryo
 M046
female body
 V041
embryo
............................................GATCCCCGTCGGCTTTCTTG........................................................................................................................................................................................... 20 3 2 0.50 1 1 0 0 0
...........................................GAATTCCCGGTGGTTTTC.............................................................................................................................................................................................. 18 2 3 0.33 1 1 0 0 0
.....................................................................................................................CCGCAGCTGGCCTCCAATGAG................................................................................................................. 21 3 5 0.20 1 0 1 0 0
......................................................................................................................AGCAGCTGGTCTACAAGGT.................................................................................................................. 19 2 6 0.17 1 0 0 0 1
........................................................................................................................................................................CAGACCCAGCAGCAGCAGCA............................................................... 20 0 6 0.17 1 1 0 0 0
...................................TTATCATGGATTTCCCGTT..................................................................................................................................................................................................... 19 3 20 0.15 3 0 0 3 0
.......................................................................................................CCTCACCATCCCGCCTGCAG................................................................................................................................ 20 3 8 0.13 1 0 1 0 0
.....................................................................................................................................................................................AGCAGCAACAAGAGCAGC.................................................... 18 0 9 0.11 1 0 0 1 0
.......................................................................................................................GCAGCTGGCCTCCAATGG.................................................................................................................. 18 2 20 0.05 1 1 0 0 0
..................................................................................................................TCCCAGCAGCTGGTCTCCAA..................................................................................................................... 20 3 20 0.05 1 0 0 1 0

Anti-sense strand reads

GCTCCGTGTTTCCTGTTCGAGCGTATAAAAAGCATCAAAGTACCTTAAGGGCAACCGAAAGAACAACGTCTACGGTCGAAACTGCCGTCGCTACCTTGGCACGGGAGTGGTCGGGGGGTCGTCGACCGGATGTTACACGAGGCCGGCTATGACTTCAGCGTCGTCGTGGTCTGGGTCGTCGTCGTCGTTGTTCTCGTCGTCTTCGACGTCGTGAACGTCGTCAACGTCTTACACGTCGTTTACGTCGTCGT
**************************************************.....(((((((((((((...(((..(((.(((.((((.((.......)))))).)))..)))......((.(((((.........((((.((((..........)))).)))).........))))).)).))))))))))))).)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V041
embryo
 M060
embryo
 V056
head
.....................................................................................................CGGGAGTGGTCGGGGGGACGGT................................................................................................................................ 22 3 2 0.50 1 0 0 1 0 0
...........................................TTGAAGGGCAACCTAAAGAACA.......................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0
...................................AATAGTACCTAAAGGGCAA..................................................................................................................................................................................................... 19 3 20 0.30 6 4 2 0 0 0
.................................................................................CTCCCGTCGCTACTTGGGCAC..................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0
....................................AAAGCATCTTAAGGGCAAACG.................................................................................................................................................................................................. 21 3 4 0.25 1 0 1 0 0 0
..............................................................................................GTTGGCACTGGAATGGTCG.......................................................................................................................................... 19 3 7 0.14 1 0 1 0 0 0
....................................ATAGTACCTAAAGGGCAA..................................................................................................................................................................................................... 18 2 12 0.08 1 0 1 0 0 0
...................................................................................................................................................................TCGTGTTCTGGGTCGTGGTA.................................................................... 20 3 20 0.05 1 0 0 0 0 1
..........................AAAAAGCACCGAAGTACCAT............................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6328:3953769-3954019 - dmo_526 CGAGGCACAAAGGACA-----------AGCTCGCATATTTTTCGTAGTTTCAT------------------------------------------------------GGAATTCCCGT--------T----------GGCTTTCTTG----------------T---TGCAGATGCCAGCT------TTGACGGCAGC-GATGGAACC---GTGCCCTCACCA---G--------CCCCCC-----------------------------------------------------------------------------------------------A---------------------------------------------------G--------------------------------------------------CAGCT--------------------------------------------------------------------------------------------------------------------------------------GG--C---------------------------------------CTACAATGTGCTCCGG--------CCGATA------------------------CTGAAGTCGCAGCAGCACC-----AGACCCA-----------------------------GCAGCAGCAGCAAC------AAGAG------------------------------------------------------------------------------------------------------------CA------------------GCAGAAGCTGCAGCACTTG----------------------------------------------------CAGCAGTTGCAGAA-------------------------------------------------------TGT---GCAGCAAA---T-G-C---------------A---GCAGCA---------
droVir3 scaffold_12875:5643509-5643790 + CCAAGCGCCAAAAACC-----------TGCTCGGATAGT--------------------------------GTAATTA----------------CTCGCAATCTTATCAAAATGCCGT--------C----------GCGTG---------------------------CCTCTTTCGGCG------TCTATAAAAGCA-AAGCACACACCAAGCACTCGAC---ACACACACAC-------------------------------------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------CAGCCGGTCTCAGCAATATGTTCGCACTGACAGCAACAACCACGCTTATTGCCCTGAACAGCGCAT-----------------------------------------------------------------------------------------------------------------------GCAACAT--------GCCGCGGCAGCAG------------------------C----------------------------------------------------------------------------AGCAACAA------------------------------CAG-------------------------------------------------------------CAGA--------TTCA------------------GCGGTTGCAAC---AAATG----------------------------------------------------CAGCAGCTGCAAAT-------------------------------------------------------GTT---GCAGCAGA---G-T-C---------------AATACAAGCA---------
droGri2 scaffold_14853:1620650-1620935 - CACAACAC----------------------------------------------------------------------CGACACAGAA-------------------------------------------TC--------------------------CCATATTAGCCAT-----GACT------TCAATGATGA---ATGCAA----------------------------------CAGTTGGATTACCAGCAGCAGCAGCAGCC------------GTAACAACAACGCCCGCTGTTGT-CAGCACGGCGCTGGTGACGCTCAG------------------------------------------------------CAACAGCAACAGCAACACGAATAACATTAGCTCACAGCCA---------------------------------------------------------------------------------------------------------------------------------------------------GCCACGC---------------------------------------------------------------------------------------------------------------------CCACAA-----AGG-CAACAGC-AGCA------------------------------GCAGCAGCAG---CTGCAGGAGCAGCAGCAGCAGTAGCAGAAGCGAACAAACAGCAATTGCAGCAGCAGCAGCAACAACAGCAACATCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCA---------
droWil2 scf2_1100000004558:1672402-1672635 - AAACACA--AAGAACA-----------ATTTCTAATATTTTTA--------------------------------------------ATT--TTTAGGTAACTTTATG-----CC-----------CAATGGT--------------------------GGAGCACCCAATGGCGGGGCAC------CAAATGGCGGC-AATGGT--G---GCATGATG------------------GCTGGGCC------------------------CAATGTGCCACAAA---------------TGCAATTGACTCCGGCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGCAGCAGCAAT-----TGATGCG-----------------------------ACAACAACAACAAC------AGCAG------------------------------CAG-------------------------------------------------------------CAACAT--CAAAT----------------------------------------------------------------------------------------------------------------------GGTTCC---------------TGGT--------------------GGTGGTAACAAC---ATG-C---------------A---ACAGAT---------
dp5 2:9760287-9760510 - GGCGACAT----------------------------------------------------------------------CTTCACCCAA-------------------------------------------TC--------------------------CTCGCCCGCCCATGTCCCGGTG------GCCGTCACGCCG-GAGCCCCT---GC-------------------------------------------------------------------------------------GGCAGTCCACCCCCGTGCCGGTCA-----TGCAGCACCA---------------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAG-GCGGCCATGGCCA--CCA---TCCA-----------------------------------------------GCTGCAGCAGCAG------------------------CA-------------------------------------------------------------------------GCAACAGCAG------------------------------CAG-------------------------------------------------------------CAGGCC--CAGATCCA------------------GCAGCTGCAGCATCAGCTGCAGCAGACGCAGTCGCA--------------------------------------------------------------------------------------------------------GGT---GCAGCAGG---C-C-C---------------A---GCAGCA---------
droPer2 scaffold_0:10719199-10719422 + GGCGACAT----------------------------------------------------------------------CTTCACCCAA-------------------------------------------TC--------------------------CTCGCCCGCCCATGTCCCGGTG------GCCGTCACGCCG-GAGCCCCT---GC-------------------------------------------------------------------------------------GGCAGTCCACCCCCGTGCCGGTCA-----TGCAGCACCA---------------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAG-GCGGCCATGGCCA--CCA---TCCA-----------------------------------------------GCTGCAGCAGCAG------------------------CA-------------------------------------------------------------------------GCAACAGCAG------------------------------CAG-------------------------------------------------------------CAGGCC--CAGATCCA------------------GCAGCTGCAGCATCAGCTGCAGCAGACGCAGTCGCA--------------------------------------------------------------------------------------------------------GGT---GCAGCAGG---C-C-C---------------A---GCAGCA---------
droAna3 scaffold_12929:2933479-2933693 - AATTTCAGAA----------------------------------------------------------------------ACAACCAA------------------T-------------------TGGCTCT--------------------------CCCGCC------------------------------GCCT-CAGCAACT---GC-------------------------------------------------------------------------------------AGCAGCC----------------------------------------------------------------------------------------GCCACC---------------TCGAGCT-------------------------------------------------------------------------------------CAACCGCAGCAACAG---------------------------------------CAGCT-----------------------------------------------------------GCAACA---------------------TGTGTCGCA------------------------------GCCTC-----CGCAGAT-GCAACAGT-TGCAACATCTAGCCCAAGCACAGCAGCAACATC------TTACT------------------------------CCG-------------------------------------------------------------TTGCAG--------CA------------------GCAGCAGCAGCAGCAG-------------------------------------------------------CAGCAGCAGAATCT-------------------------------------------------------TGC---GC---------T-G-C---------------A---GCAGAA---------
droBip1 scf7180000396580:1192377-1192624 - AAGAACGA--------------------TCTCGAATCGCTTTT---------------------------------------------------GCAG---------------------------------------------------------------------------------------------------------------------GATGCCAAGG----------ATCTAGACTT------------------------------------------------------------------------GGATT-----TGATAGACGATAACCTGTCGGCGGTGGGGATGGATGTCGGCGATGCGCTCAGCACGTTGCAA--GAAACTCC---------------GCTAGATCCCCAG------------C------------------------A-------------------------------------------------TCAACAGCAGCAGCAGCAGGGTGGAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TG------------------CAG-------------------------------------------------------------CAGCCA--CAAATGAT------------------GCAAATGCCCTACCAGCAGCAGCAGCAGCAGCAGCC--------------------------------------------------------------------------------------------------------TCC---ACAAC------T-G-C---------------A---ACAGCAGATGATCAT
droKik1 scf7180000302685:142353-142552 + CGTATTTT---------------------------------TATTAAT----T------------------------------------------------------GCA-----------------GATGTCCGCCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCAG------------------------------------------------------TTGCAG--ATGGCCCCGCAGACTACTTCGGCCCTAAGTCACCACCATCCTAACCAGC------------------------AGCAACAGCAG-------------------------CAGCTGC------------------------AG--------------------------------------------------------------------------------CCACCTCAGCAGCAGCAGGC--------C-------------------------------------------------CGC---------------------------------------------------------------------------CCCGCAGCAGCAGC-----------------------------------------AACAACAGCAGCATTTTGCGAATCATCACAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---CCAAC------A-G-C---------------A---GCAGCA---------
droFic1 scf7180000454104:1161832-1162026 + CCGTTG------------------------------------------------------------------------C-AGC-------------------------------------------TGCTG-C--------------------------TG---------------CGCAG------CCAGCGACGAC-AG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------A-------------------------------------------------GCAACAGCAGCAACAGCAGCAACACGAGCAGCAGCAGCAACAACAGCAACAGA---AACAAGAC--------------------------------------------------------------------------------------------------------AAGCAGCAACGCCAGCAG-----CAG-C-------------------------------------------AACAGCAG------------------------------CAG-------------------------------------------------------------CAACAG--------CA------------------GCAGCAGCAGCGGCAG-------------------------------------------------------CAGCAGCAGCAGCT-------------------------------------------------------AAGGCAGCAGCAAC---AAT-C---------------A---GCAACA---------
droEle1 scf7180000490996:931430-931663 + CAGGT-GCAAGTG-CA-----------GACGAGC--AGC--------------------------------GCCTACG-----CCTTG-------------------------------------------TA--------------------------TCCACCAGCTAGT----------------------------------------------CCCC---AAACGCAGAC-------------------------------------------------------------------------------------GC-----CG--------------------------------------------------------------------------------------------------------------C------------------------AGCAACAGCAG-------------------------------------------------CAGCCACCGGG----------------------------------------AGCCGCC--GACTTTC----------ACTATGTCAACT-----------CCAGCAA--------GG----------------------------------------------------------------------------------------------------------------------------------CGCAACAGCAGC------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCGCCAG----------------------------------------------------CAGCAGCAACAGACTTCCAATCAAATGGTTCCTCCACACGTGGTCGTCGGCCTGGGTGGTCATCCACTCAG-----------------------------------T---CTAGCC---------
droRho1 scf7180000776529:9126-9365 - AATTTTGT--------------------------TTATTTTTCTTCATCTTTT------------------------------------------------------GCA-----------------GATGTCCGCTGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTCAG------------------------------------------------------TTGCAG--ATGGCCCCGCAGACCACTTCGGCCCTAAGTCATCACCATCCCAATCAGC------------------------AG------CAG-------------------------CAGTTGC------------------------AA--------------------------------------------------------------------------------CCGCCGCAGCA------------------------GCAG------------------------------CCGCAACAGCCCC-----CGCCTCC-GCAACAGC----------------------------AGCAGC------AT--------------------------------------------------------------------------------TTTGCTAACCATCACAGCAAC----------CA------------------ACAGTCGCAGC---AA-------------------------------------------------------CAGGAGCAACAGAA-------------------------------------------------------TCC---GCAGCAGG---C-A-C---------------A---ACAGCA---------
droBia1 scf7180000302428:7172944-7173179 - TGCAGCACATGGTGCA-----------GGCGGGCGTGGC--------------------------------GCCTTTC-----CCG---------------------GGCGCTCCGGC--------C----------GGCTATGCCGCCGCACCGAATCCC-----------------GCTGCAGCGGCT-------------------------------------------------------------------------------------------GTTGCAGCAGCG-------------GCCGCCGC------CC-----AGCAGCAGCA---------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGGC--------C---------------------------------------------------------------CA-----------------------------GCAACAACAACAGCAGCAGCAGCAA------------------------------CAG-------------------------------------------------------------CAGGCC--CAACAGCA------------------GCAGCAACAACAACAG---------------------------------------------GTGGCCGCAGGAGGACCGCCGCCC-------------------------------------------------------AACGCTGC--CGAC---AGTCT---------------G---TCAATG---------
droTak1 scf7180000415765:541737-541997 - GCAG-CATTAGCAACATCACCGGCAACATTTCCAGCGGCA-------TTT--------------------------------------------GCTGCACTTCCAGCA----------------------------ACATTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCTGCACT-----TGCAACATCT---------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCGTTGGCAGCACTT--CCA---GCTACACTCGAGG------------CCGCACCGGCAGCATCA---------------------TGAGCAATAGTTCCAGCGGCATTTGCTGCACTTCCAGCCACACT-----CGAGGCC-----------------------------GCACCGGCAGCATC------ATGAG------------------------------C---------------------------------------------------------------------------------------------------------------------AATAGTTCCAGCGGCA--------------------------------------------------------------------------------------------------------TTG---GCAGCACT---T-C-CAGCCACACTCGAGGCC---GCACCG---------
droEug1 scf7180000409458:71695-71909 - GGTTAAGC----------------------TC----------------------------------------------TCTTACCCAG--TATTGTAATACCCACATTG------ACTCTTTCAGCTGGTTCC--------------------------GATACCGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACAACTCGGATAATATTCT-ACCAAACTCC---------GGA---C------------------------A-------------------------------------------------ACAGCAGCAGCAACGGCAGAGT---GCCC------------------------------------GCC--AGCAAAT----------GTT---------------------------ACCCCAAG---------G------------------------------------CAGCAATGCC--CAG-----CAG-C---AACA----------------------------GC---------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCAGCAGCAACAACAGCAACT--------------------------------------------------------------------------------------------------------CTT---GCAGC------A-G-C---------------A---GCAGCA---------
dm3 chrX:4960434-4960661 + GGATTT------------------------------------------------------------------------CGAGC-------------------------------------------TGGTGTC--------------------------CACGCCCTCGCTAACGCCGGAT------TCAGTGACGCC-GGTGGAGCA---GCACAATACCAATA----------CAACCCAGCT------------------------------------------------------------------------GGATG-----TCCTGCACGAGAATCTGTTGACGCAGC-----------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------GA--C---------------------------------------CCACAATATAGTCCGGG---------G------------------------------------CGGCAGCAAT--CAG-----CAG-C---AGCA----------------------------GCACC------ATCAACAGCATGGTGTGCAGCAGCAAC------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------------CAGCAGCAGCATAG-------------------------------------------------------TGT---GCAGCAGC---A-A-C---------------A---GCAGCA---------
droSim2 3r:18660704-18660928 - ACATACCCAT------------------------ATCTATAACATTGTCTAAT------------------------------------------------------CCAATTACCAT--------C----------TCATGTTTCG----------------T---ATCGCTTACAGGCT------ACA---------------------------------------------------------------------------------------------------------------------------------------------ACACCA---------------------------------------------------G-----------------------------------------------------------------------------------CAA-------------------------CACACAC------------------------GA--------------------------------------------------------------------------------CCGCATCAACAACAGCACGC--------CCCCGCAGCAG------------------------CA------------GC-------------------------------------------------------------AATCGCAG------------------------------CAG-------------------------------------------------------------CCGACTGTCAATGGCA------------------GCGGTAGCGCC---AGCAGCAACAACAATAACTCCA----------------------------------------------TG---------------------------CTGCCGCCCGCTGTCC-------------AGCAGAGCAACAAC---A-G-C---------------A---ACAACG---------
droSec2 scaffold_4:1786490-1786711 - GGACTT------------------------------------------------------------------------CGAGC-------------------------------------------TGGTGTC--------------------------CACGCCCTCGCTAACGCCGGAT------TCAGTGACGCC-GGTGGAGCA---GCACAGTGCCAATA----------CACCCCAGCT------------------------------------------------------------------------GGATG-----TCCTGCACGAGAATCTGTTGTCGCATC-----------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------GA--C---------------------------------------CAACAATGTAGTCCGGG---------G------------------------------------CAGCAGCAAT--CAG-----CAG-C---AGCA----------------------------GCACC------ATCAGCATCACGGTGTGCAGCAGCAAC------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------------CAGCAGCAGCATAA-------------------------------------------------------TGT---GCA----------G-C---------------A---GCAGCA---------
droYak3 X:15910862-15911082 + CGAGACGAAAGGGGAG-----------AACGCGTGAAAGCCCCTAAGTCCTATGAAAGACTCGATGAGCAT-------ACTCA------------------------------------------------------------------------------------CCCAAACGCCCAGC------GAGCCAAACGC-AGCGCATC-------------------------------CCCAGCT------------------------------------------------------------------------GCAC-------------------------------------------------------------------------------------------------------CACCACCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTAC--------GCTGCAGCAGCAG------------------------C----------------------------------------------------------------------------AGCAGCAC------------------------------CAC-------------------------------------------------------------CAGC--------AGCA------------GCACCACCACCTACACTACGGCCTG--------------------------------------------------------------------------------------------CAGCCACCGGCGGTGG-------------CGC---ACAGCATCCATA-G-C---------------A---GCAGCA---------
droEre2 scaffold_4784:13998041-13998268 + AGCAGCACAAC-AGCA-----------AGCCCACGTGGTA----------------------------------------------------TTGCCGCAACCGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCTGCAGCAGCAAGCGCAGCAAAGTCAGGA--GCCCTT--GGCTGTT---------------------------------------------------ATAGCAGCAG------------------------C----------------------------------------------------------------------------TGCAGCTG----------CG------------------CAG-------------------------------------------------------------CAGCCC--ATGGCCACCTATTTTGTTCG------GCAACCGCAGCAAAAACAGCAATCGCCAAAGCCGCATGCTCTTGTGGCACAACAGCAACATGTGG-------------------------------------------------TC----------------------------------GGTG---C-G-C---------------A---ACAGCA---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CGAGGCACAAAGGACA-----------AGCTCGCATATTTTTCGTAGTTTCAT------------------------------------------------------GGAATTCCCGT--------T----------GGCTTTCTTG----------------T---TGCAGATGCCAGCT------TTGACGGCAGC-GATGGAACC---GTGCCCTCACCA---G--------CCCCCC-----------------------------------------------------------------------------------------------A---------------------------------------------------G--------------------------------------------------CAGCT--------------------------------------------------------------------------------------------------------------------------------------GG--C---------------------------------------CTACAATGTGCTCCGG--------CCGATA------------------------CTGAAGTCGCAGCAGCACC-----AGACCCA-----------------------------GCAGCAGCAGCAAC------AAGAG------------------------------------------------------------------------------------------------------------CA------------------GCAGAAGCTGCAGCACTTG----------------------------------------------------CAGCAGTTGCAGAA-------------------------------------------------------TGT---GCAGCAAA---T-G-C---------------A---GCAGCA---------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----AGACCCA-----------------------------GCAGCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................2060.171000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAAC------AAGAG------------------------------------------------------------------------------------------------------------CA------------------GC..................................................................................................................................................................................................1890.111100000
droVir3
CCAAGCGCCAAAAACC-----------TGCTCGGATAGT--------------------------------GTAATTA----------------CTCGCAATCTTATCAAAATGCCGT--------C----------GCGTG---------------------------CCTCTTTCGGCG------TCTATAAAAGCA-AAGCACACACCAAGCACTCGAC---ACACACACAC-------------------------------------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------CAGCCGGTCTCAGCAATATGTTCGCACTGACAGCAACAACCACGCTTATTGCCCTGAACAGCGCAT-----------------------------------------------------------------------------------------------------------------------GCAACAT--------GCCGCGGCAGCAG------------------------C----------------------------------------------------------------------------AGCAACAA------------------------------CAG-------------------------------------------------------------CAGA--------TTCA------------------GCGGTTGCAAC---AAATG----------------------------------------------------CAGCAGCTGCAAAT-------------------------------------------------------GTT---GCAGCAGA---G-T-C---------------AATACAAGCA---------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................CTCGGATAGT--------------------------------GTAATTA----------------CTCGCAATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGCAATATGTTCGCACTGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCAGCAG------------------------C----------------------------------------------------------------------------AGCAACAA------------------------------C.....................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG------------------------C----------------------------------------------------------------------------AGCAACAA------------------------------CAG-------------------------------------------------------------CAG...................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
CACAACAC----------------------------------------------------------------------CGACACAGAA-------------------------------------------TC--------------------------CCATATTAGCCAT-----GACT------TCAATGATGA---ATGCAA----------------------------------CAGTTGGATTACCAGCAGCAGCAGCAGCC------------GTAACAACAACGCCCGCTGTTGT-CAGCACGGCGCTGGTGACGCTCAG------------------------------------------------------CAACAGCAACAGCAACACGAATAACATTAGCTCACAGCCA---------------------------------------------------------------------------------------------------------------------------------------------------GCCACGC---------------------------------------------------------------------------------------------------------------------CCACAA-----AGG-CAACAGC-AGCA------------------------------GCAGCAGCAG---CTGCAGGAGCAGCAGCAGCAGTAGCAGAAGCGAACAAACAGCAATTGCAGCAGCAGCAGCAACAACAGCAACATCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCA---------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................................................ACAACGCCCGCTGTTGT-CAGCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110
..CAACAC----------------------------------------------------------------------CGACACAGAA-------------------------------------------TC--------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGCAGCAGCAGCAGT...........................................................................................................................................................................................................................................................................................................2070.14101
droWil2
AAACACA--AAGAACA-----------ATTTCTAATATTTTTA--------------------------------------------ATT--TTTAGGTAACTTTATG-----CC-----------CAATGGT--------------------------GGAGCACCCAATGGCGGGGCAC------CAAATGGCGGC-AATGGT--G---GCATGATG------------------GCTGGGCC------------------------CAATGTGCCACAAA---------------TGCAATTGACTCCGGCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGCAGCAGCAAT-----TGATGCG-----------------------------ACAACAACAACAAC------AGCAG------------------------------CAG-------------------------------------------------------------CAACAT--CAAAT----------------------------------------------------------------------------------------------------------------------GGTTCC---------------TGGT--------------------GGTGGTAACAAC---ATG-C---------------A---ACAGAT---------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAT----------------------------------------------------------------------------------------------------------------------GGTTCC---------------TGGT--------------------GGTGGT................................................2111.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--CAAAT----------------------------------------------------------------------------------------------------------------------GGTTCC---------------TGGT--------------------GGTGGT................................................2311.00100010
......................................................................................................................................................................................................................TGATG------------------GCTGGGCC------------------------CAATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
................................................................................................................................ATGGT--------------------------GGAGCACCCAATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
..............................................................................................................................................................................................................................................................................................................ATTGACTCCGGCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----TGATGCG-----------------------------ACAACAACAAC..................................................................................................................................................................................................................................................................................................................................................1911.00100010
...........................................................................................................................................................................................CAAATGGCGGC-AATGGT--G---GC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.............................................................................................................................................................................................AATGGCGGC-AATGGT--G---GCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.25100001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAAC------AGCAG------------------------------CAG-------------------------------------------------------------CAACAT--C.............................................................................................................................................................................................................................24110.09100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-----------------------------ACAACAACAACAAC------AGCAG------------------------------C.....................................................................................................................................................................................................................................................................................................22120.08100001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------------------ACAACAACAACAAC------AGCAG------------------------------CA....................................................................................................................................................................................................................................................................................................22200.05100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAAC------AGCAG------------------------------CAG-------------------------------------------------------------......................................................................................................................................................................................................................................19200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAAC------AGCAG------------------------------CAG-------------------------------------------------------------CAA...................................................................................................................................................................................................................................21200.05100010
dp5
GGCGACAT----------------------------------------------------------------------CTTCACCCAA-------------------------------------------TC--------------------------CTCGCCCGCCCATGTCCCGGTG------GCCGTCACGCCG-GAGCCCCT---GC-------------------------------------------------------------------------------------GGCAGTCCACCCCCGTGCCGGTCA-----TGCAGCACCA---------------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAG-GCGGCCATGGCCA--CCA---TCCA-----------------------------------------------GCTGCAGCAGCAG------------------------CA-------------------------------------------------------------------------GCAACAGCAG------------------------------CAG-------------------------------------------------------------CAGGCC--CAGATCCA------------------GCAGCTGCAGCATCAGCTGCAGCAGACGCAGTCGCA--------------------------------------------------------------------------------------------------------GGT---GCAGCAGG---C-C-C---------------A---GCAGCA---------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................CA-----TGCAGCACCA---------------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAG-GCGGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCTGCAGCAGACGCAGTC...................................................................................................................................................................2211.0010000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGACGCAGTCGCA--------------------------------------------------------------------------------------------------------GGT---GCAGC.............................................2611.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAG------------------------CA-------------------------------------------------------------------------GCAACAGC......................................................................................................................................................................................................................................................................................................................................19200.0510000000010
droPer2
GGCGACAT----------------------------------------------------------------------CTTCACCCAA-------------------------------------------TC--------------------------CTCGCCCGCCCATGTCCCGGTG------GCCGTCACGCCG-GAGCCCCT---GC-------------------------------------------------------------------------------------GGCAGTCCACCCCCGTGCCGGTCA-----TGCAGCACCA---------------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAG-GCGGCCATGGCCA--CCA---TCCA-----------------------------------------------GCTGCAGCAGCAG------------------------CA-------------------------------------------------------------------------GCAACAGCAG------------------------------CAG-------------------------------------------------------------CAGGCC--CAGATCCA------------------GCAGCTGCAGCATCAGCTGCAGCAGACGCAGTCGCA--------------------------------------------------------------------------------------------------------GGT---GCAGCAGG---C-C-C---------------A---GCAGCA---------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC--CAGATCCA------------------GCAGCTGCA...........................................................................................................................................................................................2011.001001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAG------------------------CA-------------------------------------------------------------------------GCAACAGCAG------------------------------CA....................................................................................................................................................................................................................................................................................................23200.102011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAG------------------------CA-------------------------------------------------------------------------GCAACAGCAG------------------------------CAG-------------------------------------------------------------......................................................................................................................................................................................................................................23200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG------------------------CA-------------------------------------------------------------------------GCAACAGCAG------------------------------CA....................................................................................................................................................................................................................................................................................................20200.051010000
droAna3
AATTTCAGAA----------------------------------------------------------------------ACAACCAA------------------T-------------------TGGCTCT--------------------------CCCGCC------------------------------GCCT-CAGCAACT---GC-------------------------------------------------------------------------------------AGCAGCC----------------------------------------------------------------------------------------GCCACC---------------TCGAGCT-------------------------------------------------------------------------------------CAACCGCAGCAACAG---------------------------------------CAGCT-----------------------------------------------------------GCAACA---------------------TGTGTCGCA------------------------------GCCTC-----CGCAGAT-GCAACAGT-TGCAACATCTAGCCCAAGCACAGCAGCAACATC------TTACT------------------------------CCG-------------------------------------------------------------TTGCAG--------CA------------------GCAGCAGCAGCAGCAG-------------------------------------------------------CAGCAGCAGAATCT-------------------------------------------------------TGC---GC---------T-G-C---------------A---GCAGAA---------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------GCAGCAGCAGCAGCAG-------------------------------------------------------CAGC.........................................................................................................................22200.102020000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAG--------CA------------------GCAGCAGCAGCAGCAG-------------------------------------------------------CAGC.........................................................................................................................27140.071010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAG-------------------------------------------------------CAGCAG.......................................................................................................................22200.051100000
droBip1
AAGAACGA--------------------TCTCGAATCGCTTTT---------------------------------------------------GCAG---------------------------------------------------------------------------------------------------------------------GATGCCAAGG----------ATCTAGACTT------------------------------------------------------------------------GGATT-----TGATAGACGATAACCTGTCGGCGGTGGGGATGGATGTCGGCGATGCGCTCAGCACGTTGCAA--GAAACTCC---------------GCTAGATCCCCAG------------C------------------------A-------------------------------------------------TCAACAGCAGCAGCAGCAGGGTGGAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TG------------------CAG-------------------------------------------------------------CAGCCA--CAAATGAT------------------GCAAATGCCCTACCAGCAGCAGCAGCAGCAGCAGCC--------------------------------------------------------------------------------------------------------TCC---ACAAC------T-G-C---------------A---ACAGCAGATGATCATSizeHit CountTotal NormTotal
No Reads
droKik1
CGTATTTT---------------------------------TATTAAT----T------------------------------------------------------GCA-----------------GATGTCCGCCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCAG------------------------------------------------------TTGCAG--ATGGCCCCGCAGACTACTTCGGCCCTAAGTCACCACCATCCTAACCAGC------------------------AGCAACAGCAG-------------------------CAGCTGC------------------------AG--------------------------------------------------------------------------------CCACCTCAGCAGCAGCAGGC--------C-------------------------------------------------CGC---------------------------------------------------------------------------CCCGCAGCAGCAGC-----------------------------------------AACAACAGCAGCATTTTGCGAATCATCACAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---CCAAC------A-G-C---------------A---GCAGCA---------SizeHit CountTotal NormTotal
No Reads
droFic1
CCGTTG------------------------------------------------------------------------C-AGC-------------------------------------------TGCTG-C--------------------------TG---------------CGCAG------CCAGCGACGAC-AG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------A-------------------------------------------------GCAACAGCAGCAACAGCAGCAACACGAGCAGCAGCAGCAACAACAGCAACAGA---AACAAGAC--------------------------------------------------------------------------------------------------------AAGCAGCAACGCCAGCAG-----CAG-C-------------------------------------------AACAGCAG------------------------------CAG-------------------------------------------------------------CAACAG--------CA------------------GCAGCAGCAGCGGCAG-------------------------------------------------------CAGCAGCAGCAGCT-------------------------------------------------------AAGGCAGCAGCAAC---AAT-C---------------A---GCAACA---------SizeHit CountTotal NormTotal
No Reads
droEle1
CAGGT-GCAAGTG-CA-----------GACGAGC--AGC--------------------------------GCCTACG-----CCTTG-------------------------------------------TA--------------------------TCCACCAGCTAGT----------------------------------------------CCCC---AAACGCAGAC-------------------------------------------------------------------------------------GC-----CG--------------------------------------------------------------------------------------------------------------C------------------------AGCAACAGCAG-------------------------------------------------CAGCCACCGGG----------------------------------------AGCCGCC--GACTTTC----------ACTATGTCAACT-----------CCAGCAA--------GG----------------------------------------------------------------------------------------------------------------------------------CGCAACAGCAGC------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCGCCAG----------------------------------------------------CAGCAGCAACAGACTTCCAATCAAATGGTTCCTCCACACGTGGTCGTCGGCCTGGGTGGTCATCCACTCAG-----------------------------------T---CTAGCC---------SizeHit CountTotal NormTotal
No Reads
droRho1
AATTTTGT--------------------------TTATTTTTCTTCATCTTTT------------------------------------------------------GCA-----------------GATGTCCGCTGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTCAG------------------------------------------------------TTGCAG--ATGGCCCCGCAGACCACTTCGGCCCTAAGTCATCACCATCCCAATCAGC------------------------AG------CAG-------------------------CAGTTGC------------------------AA--------------------------------------------------------------------------------CCGCCGCAGCA------------------------GCAG------------------------------CCGCAACAGCCCC-----CGCCTCC-GCAACAGC----------------------------AGCAGC------AT--------------------------------------------------------------------------------TTTGCTAACCATCACAGCAAC----------CA------------------ACAGTCGCAGC---AA-------------------------------------------------------CAGGAGCAACAGAA-------------------------------------------------------TCC---GCAGCAGG---C-A-C---------------A---ACAGCA---------SizeHit CountTotal NormTotal
No Reads
droBia1
TGCAGCACATGGTGCA-----------GGCGGGCGTGGC--------------------------------GCCTTTC-----CCG---------------------GGCGCTCCGGC--------C----------GGCTATGCCGCCGCACCGAATCCC-----------------GCTGCAGCGGCT-------------------------------------------------------------------------------------------GTTGCAGCAGCG-------------GCCGCCGC------CC-----AGCAGCAGCA---------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGGC--------C---------------------------------------------------------------CA-----------------------------GCAACAACAACAGCAGCAGCAGCAA------------------------------CAG-------------------------------------------------------------CAGGCC--CAACAGCA------------------GCAGCAACAACAACAG---------------------------------------------GTGGCCGCAGGAGGACCGCCGCCC-------------------------------------------------------AACGCTGC--CGAC---AGTCT---------------G---TCAATG---------SizeHit CountTotal NormTotal
No Reads
droTak1
GCAG-CATTAGCAACATCACCGGCAACATTTCCAGCGGCA-------TTT--------------------------------------------GCTGCACTTCCAGCA----------------------------ACATTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCTGCACT-----TGCAACATCT---------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCGTTGGCAGCACTT--CCA---GCTACACTCGAGG------------CCGCACCGGCAGCATCA---------------------TGAGCAATAGTTCCAGCGGCATTTGCTGCACTTCCAGCCACACT-----CGAGGCC-----------------------------GCACCGGCAGCATC------ATGAG------------------------------C---------------------------------------------------------------------------------------------------------------------AATAGTTCCAGCGGCA--------------------------------------------------------------------------------------------------------TTG---GCAGCACT---T-C-CAGCCACACTCGAGGCC---GCACCG---------SizeHit CountTotal NormTotal
No Reads
droEug1
GGTTAAGC----------------------TC----------------------------------------------TCTTACCCAG--TATTGTAATACCCACATTG------ACTCTTTCAGCTGGTTCC--------------------------GATACCGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACAACTCGGATAATATTCT-ACCAAACTCC---------GGA---C------------------------A-------------------------------------------------ACAGCAGCAGCAACGGCAGAGT---GCCC------------------------------------GCC--AGCAAAT----------GTT---------------------------ACCCCAAG---------G------------------------------------CAGCAATGCC--CAG-----CAG-C---AACA----------------------------GC---------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCAGCAGCAACAACAGCAACT--------------------------------------------------------------------------------------------------------CTT---GCAGC------A-G-C---------------A---GCAGCA---------SizeHit CountTotal NormTotal
No Reads
dm3
GGATTT------------------------------------------------------------------------CGAGC-------------------------------------------TGGTGTC--------------------------CACGCCCTCGCTAACGCCGGAT------TCAGTGACGCC-GGTGGAGCA---GCACAATACCAATA----------CAACCCAGCT------------------------------------------------------------------------GGATG-----TCCTGCACGAGAATCTGTTGACGCAGC-----------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------GA--C---------------------------------------CCACAATATAGTCCGGG---------G------------------------------------CGGCAGCAAT--CAG-----CAG-C---AGCA----------------------------GCACC------ATCAACAGCATGGTGTGCAGCAGCAAC------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------------CAGCAGCAGCATAG-------------------------------------------------------TGT---GCAGCAGC---A-A-C---------------A---GCAGCA---------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................AGTGACGCC-GGTGGAGCA---GCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22137.0037000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000001215305000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................ATCTGTTGACGCAGC-----------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------GA--C---------------------------------------CCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................23112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002180000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................GACGCC-GGTGGAGCA---GCACAATACCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2718.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------------CCACAATATAGTCCGGG---------G------------------------------------CGGC............................................................................................................................................................................................................................................................................................................................................................................................................2318.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TG-----TCCTGCACGAGAATCTGTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATAGTCCGGG---------G------------------------------------CGGCAGCAAT--C...................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................AGTGACGCC-GGTGGAGCA---GCACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................AGTGACGCC-GGTGGAGCA---GC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................AGTGACGCC-GGTGGAGCA---G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000020000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................G-----TCCTGCACGAGAATCTGTTGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................CACGAGAATCTGTTGACGCAGC-----------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000
.............................................................................................................................................................................................................................................ACCCAGCT------------------------------------------------------------------------GGATG-----TCCTGCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TGACGCC-GGTGGAGCA---GCACAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................CTAACGCCGGAT------TCAGTGACGCC-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
.............................................................................................................................................................................................AGTGACGCC-GGTGGAGCA---GCACAATACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................CACGAGAATCTGTTGACGCAGC-----------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------GA--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TGACGCC-GGTGGAGCA---GCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTCCGGG---------G------------------------------------CGGCAGCAAT--C...................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................ACCCAGCT------------------------------------------------------------------------GGATG-----TCCTGCACGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA----------------------------GCACC------ATCAACAGC................................................................................................................................................................................................................................................................................................................................1822.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................CGAGAATCTGTTGACGCAGC-----------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.................................................................................................................................................................................................................................................................................................................................................GAATCTGTTGACGCAGC-----------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------GA--C---------------------------------------CCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................AATCTGTTGACGCAGC-----------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------GA--C---------------------------------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................GGAT------TCAGTGACGCC-GGTGGAGCA---GCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................................................................................................................................................................................................................................AATCTGTTGACGCAGC-----------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------GA--C---------------------------------------CCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------------CAGCAGCAGCATAG-------------------------------------------------------TGT---..................................................2412.0020000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................AGTGACGCC-GGTGGAGCA---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................CCAGCT------------------------------------------------------------------------GGATG-----TCCTGCACGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCATGGTGTGCAGCA...................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CCCTCGCTAACGCCGGAT------TCAGTGACGCC-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CCCTCGCTAACGCCGGAT------TCAGTGACGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCATAG-------------------------------------------------------TGT---GCAGC.............................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TCAGTGACGCC-GGTGGAGCA---GCACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------GCACC------ATCAACAGCATGGTGTGC.......................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................CGAGAATCTGTTGACGCAGC-----------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------GA--C---------------------------------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATAGTCCGGG---------G------------------------------------CGGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................CAGTGACGCC-GGTGGAGCA---GCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................CTCGCTAACGCCGGAT------TCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................GTGACGCC-GGTGGAGCA---GCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCATAG-------------------------------------------------------TGT---GCAGCAGC---A-A-...................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................GACGCC-GGTGGAGCA---GCACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................CACGCCCTCGCTAACGCCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TGACGCC-GGTGGAGCA---GC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
ACATACCCAT------------------------ATCTATAACATTGTCTAAT------------------------------------------------------CCAATTACCAT--------C----------TCATGTTTCG----------------T---ATCGCTTACAGGCT------ACA---------------------------------------------------------------------------------------------------------------------------------------------ACACCA---------------------------------------------------G-----------------------------------------------------------------------------------CAA-------------------------CACACAC------------------------GA--------------------------------------------------------------------------------CCGCATCAACAACAGCACGC--------CCCCGCAGCAG------------------------CA------------GC-------------------------------------------------------------AATCGCAG------------------------------CAG-------------------------------------------------------------CCGACTGTCAATGGCA------------------GCGGTAGCGCC---AGCAGCAACAACAATAACTCCA----------------------------------------------TG---------------------------CTGCCGCCCGCTGTCC-------------AGCAGAGCAACAAC---A-G-C---------------A---ACAACG---------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------CACACAC------------------------GA--------------------------------------------------------------------------------CCGCATCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000000000
droSec2
GGACTT------------------------------------------------------------------------CGAGC-------------------------------------------TGGTGTC--------------------------CACGCCCTCGCTAACGCCGGAT------TCAGTGACGCC-GGTGGAGCA---GCACAGTGCCAATA----------CACCCCAGCT------------------------------------------------------------------------GGATG-----TCCTGCACGAGAATCTGTTGTCGCATC-----------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------GA--C---------------------------------------CAACAATGTAGTCCGGG---------G------------------------------------CAGCAGCAAT--CAG-----CAG-C---AGCA----------------------------GCACC------ATCAGCATCACGGTGTGCAGCAGCAAC------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------------CAGCAGCAGCATAA-------------------------------------------------------TGT---GCA----------G-C---------------A---GCAGCA---------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CGAGACGAAAGGGGAG-----------AACGCGTGAAAGCCCCTAAGTCCTATGAAAGACTCGATGAGCAT-------ACTCA------------------------------------------------------------------------------------CCCAAACGCCCAGC------GAGCCAAACGC-AGCGCATC-------------------------------CCCAGCT------------------------------------------------------------------------GCAC-------------------------------------------------------------------------------------------------------CACCACCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTAC--------GCTGCAGCAGCAG------------------------C----------------------------------------------------------------------------AGCAGCAC------------------------------CAC-------------------------------------------------------------CAGC--------AGCA------------GCACCACCACCTACACTACGGCCTG--------------------------------------------------------------------------------------------CAGCCACCGGCGGTGG-------------CGC---ACAGCATCCATA-G-C---------------A---GCAGCA---------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG------------------------C----------------------------------------------------------------------------AGCAGCAC------------------------------CAC-------------------------------------------------------------CAGC--------AGCA------------GC........................................................................................................................................................................................................2560.17100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAC------------------------------CAC-------------------------------------------------------------CAGC--------AGCA------------..........................................................................................................................................................................................................19200.05101000000000
droEre2
AGCAGCACAAC-AGCA-----------AGCCCACGTGGTA----------------------------------------------------TTGCCGCAACCGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCTGCAGCAGCAAGCGCAGCAAAGTCAGGA--GCCCTT--GGCTGTT---------------------------------------------------ATAGCAGCAG------------------------C----------------------------------------------------------------------------TGCAGCTG----------CG------------------CAG-------------------------------------------------------------CAGCCC--ATGGCCACCTATTTTGTTCG------GCAACCGCAGCAAAAACAGCAATCGCCAAAGCCGCATGCTCTTGTGGCACAACAGCAACATGTGG-------------------------------------------------TC----------------------------------GGTG---C-G-C---------------A---ACAGCA---------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACATGTGG-------------------------------------------------TC----------------------------------GG............................................2011.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACATGTGG-------------------------------------------------TC----------------------------------GGTG---C-G-C---------------A---AC.............2511.0010100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGTTCG------GCAACCGC............................................................................................................................................................................................1811.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACATGTGG-------------------------------------------------TC----------------------------------GGTG---C-G-C---------------A---ACAGCA---------2811.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGCAAGCGCAGCAAAGTCAGGA--.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
............................................................................................................A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCTGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCTCTTGTGGCACAACAGC............................................................................................................................................2311.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGTGG-------------------------------------------------TC----------------------------------GGTG---C-G-C---------------A---ACA............2111.0010000010

Generated: 05/17/2015 at 10:31 PM