ID:

dmo_508

 Coordinate:

scaffold_6328:2336600-2336750 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.3 -14.3 -14.2

Flybase annnotation

exon [dmoj_GLEANR_17124:3]; CDS [Dmoj\GI16401-cds]; intron [Dmoj\GI16401-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+
mature
  1. dmo_508  scaffold_6328:2336679-2336700 +
  2. scaffold_6359:812406-812427 +
  3. scaffold_6473:7875550-7875571 +
  4. scaffold_6473:8309008-8309029 +
  5. scaffold_6496:1131115-1131136 +
  6. scaffold_6496:1301276-1301297 +
  7. scaffold_6496:7819621-7819642 +
  8. scaffold_6496:10452585-10452606 +
  9. scaffold_6496:15996267-15996288 +
  10. dmo_1210  scaffold_6496:20127708-20127729 +
  11. scaffold_6496:25088508-25088529 +
  12. scaffold_6500:3701711-3701732 +
  13. scaffold_6500:18625078-18625099 +
  14. scaffold_6540:3789677-3789698 +
  15. scaffold_6654:302193-302214 +
  16. scaffold_6680:1123683-1123704 +
  17. scaffold_6680:5382796-5382817 +
  18. scaffold_6680:7151118-7151139 +
  19. scaffold_6680:9731158-9731179 +
  20. scaffold_6680:12421995-12422016 +
  21. scaffold_6473:815561-815582 +
  22. scaffold_6473:5906244-5906265 +
  23. scaffold_6473:8736496-8736517 +
  24. scaffold_6500:4218509-4218530 +
  25. scaffold_6500:12175040-12175061 +
  26. scaffold_6500:16800025-16800046 +
  27. scaffold_6540:6295093-6295114 +
  28. scaffold_6540:20320797-20320818 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGGATGGCGTGGCCATCGATGTCGCTGGCGGCCAAATATATGAGCAGGAGGTAAGGAATAGGTGTACGTGGAAGTTCAATATGAATGCAACAAATTCTGATATAAGCTTATTCAACAACAACAACTACACCAACAACAACAACAACAGCAAACACAAACACAAACATTTGCTTAACTATCCATATAAGACCGTATCAATCCATTTGTCAATATTGGTTGAGGGCCTGAACTGACTGCCAAAGACATAATCA
**************************************************....(((((((((.((.(((((((((.....(((((((.................))..)))))................................((((((..............)))))).)))).))))).))..))).)))...)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V056
head
......GCGTGGCCATCGATGTCGCTGGC.............................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................................................TGAACTGACTGCCAAAGAC....... 19 0 1 1.00 1 0 1 0 0
...............................................................................................................................................................................................................TAAGATTGGTTTAGGGCCT......................... 19 3 16 0.06 1 0 0 1 0
...............................................................................................................................................AACAGCAAACACACATACAAA....................................................................................... 21 2 20 0.05 1 0 0 0 1
.................................................................................................................................CCAACAACAACAACAACAGCAA.................................................................................................... 22 0 20 0.05 1 1 0 0 0
.................................................................................................................................CCCACAACAACAACTACACCAAAC.................................................................................................. 24 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

TCCTACCGCACCGGTAGCTACAGCGACCGCCGGTTTATATACTCGTCCTCCATTCCTTATCCACATGCACCTTCAAGTTATACTTACGTTGTTTAAGACTATATTCGAATAAGTTGTTGTTGTTGATGTGGTTGTTGTTGTTGTTGTCGTTTGTGTTTGTGTTTGTAAACGAATTGATAGGTATATTCTGGCATAGTTAGGTAAACAGTTATAACCAACTCCCGGACTTGACTGACGGTTTCTGTATTAGT
**************************************************....(((((((((.((.(((((((((.....(((((((.................))..)))))................................((((((..............)))))).)))).))))).))..))).)))...)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 V056
head
 V041
embryo
 M046
female body
.....................................................................................................................................................................................TATATTCTGGCATGGTTAC................................................... 19 2 2 0.50 1 0 1 0 0
........................................................................................TTGTTTAAGCCTATGTTCCA............................................................................................................................................... 20 3 15 0.47 7 7 0 0 0
........................................................................................TTGTTTAAGCCTAGATTCGCA.............................................................................................................................................. 21 3 4 0.25 1 1 0 0 0
.............................CTGGTTTATATACTCGCGCT.......................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 1 0
..................................................................................................................................................................................AGGTATTTGCTGGCAGAGT...................................................... 19 3 10 0.10 1 0 0 0 1
........................................................................................TTGTTTAAGACTATGTCCCA............................................................................................................................................... 20 3 16 0.06 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6328:2336550-2336800 + dmo_508 AGGATGGC-----GT-GG-------------------------CCATCGATGTCG------CTGG---------------------------------------------CGGCCAA-----------------AT-------------------------ATATGAG-----------CAG------GAG--------------------GTAA-----------------------------------------GGAATAGGTGT-----------------------------ACGTGGAAGTTCAATATGAA------------------------------------------------------------TGCAACAAATTC------TGATATA-A------------------------------------------------------------------------------------------G------------------------------CTTATTCAACAACAACAA---CTACACCAACA---------------------ACAACAACAACA------GCAAACAC-AAACA---------CAAACATTTGCTTAACT---------------------------------------------------------AT--------------------------------CCAT----AT-------AAGACCGTATCAATCCATTTGTCAATA----TT-----GGTTGAGGGCCTG----------------------------------------------------------------AACT-GACTGCCAAAGACATAATCA
droVir3 scaffold_13246:2518156-2518354 - AAGCTAGCA----AG-AT--------G----------------CCCGCCACGGTG------CT--------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTGCTGCCTC--------------------------------------------------CGGT--------------------------------------------------------------------CACA------------------------CGAC------CAAGC-TAAGC------------------------AACAACAAC-------------------------------------------------------------------------------------------------AACAACAA---CAATAGC---------------------------AGCAACAATAGCAACAA------C-AAACACA----ACAA---------------------------------------------------------------------------T----ATAATGCTTAACAACAACATGAACAA-TAGCTTATGC------A------ACTCGATCGCCCATCTAAGCGAT------------TCAAGGACCA----------------------------------------------------------------ATCT-CACTGTCA-----------A
droGri2 scaffold_15252:8165775-8166046 - AGCGTCAGA----GC-AAACAGAGA-G----------------AAAGCGACAG-GCTGGCAAATGCCAGGGACGACATTGTGGACGAGAAATCCTCGTGGTT--GTT--------------------------------------------------------------TGA------------------------TTC--------------------------------------------------------------GAAAATTGAGTTTTAGCGGCGCAAATAAA-----------------------------------------------------------------------------------------------AAT------AAAACTT-AGAATACCAACAGCAACAGCAACAGC---------AGCAGCAGCA---ACAG----------------------------------------------------------------------------------------------------------------------------CAACAGCAGCA------GCAAAAAC-------A----ACAACAACAAAAGCTCAACC---------------------------------------------------------AT--------------------------------TAAA-------------AAGGAGTTATCACCCAATTT---AGCACCA-C----A-AGCG-------CG----------------------------------------------------------------AAAT-AACGCACACAAACACAGTCA
droWil2 scf2_1100000004511:5742606-5742831 - AGTGTAGGA----GT-TGTTGTAG-------------------TCGCC---------------------------------------------------------------GGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATCATCAGC---------ATCAGCAACATCAGCATCAG---------------------------------------------------------------------------------------------------------------------------------CA---ACATCAACACCACAACCAACATCAACAGC------AACAACA----------------------------------------A------CAA------------CAA------------------------CAGCAACA------A------C-AAATGCAAATGGTGG--------GCACAACTAGCTCCA----------------------TGGATG-----------------------------------------------------------------------------------------------------------------------------------------GCACCAGCCAGGTGGCCATGTGTCATGATGGTTTAGTTGGCACAGCAAATGAACT-GACTGTCTATGATGTGATTA
dp5 3:5866323-5866541 - AAAGATACA----AC-AA-------------------------CAGCTGT---TG------CT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCCACAAATACTGCCCCAACAACAGCCACAAA-----------------------------------------------------------------------TA------CTGCC-------------------------------------AC---AACAACAACAACAA----------------------------------------------------------------------------------------------------------------CAAAAGCTA------CAACAACAACAACAA------C-A----------AC-----------------AGGCGTTG----------------------TGGGCGGCATTAGGCGTGGCTCGAGTGC-------AAAATGCAAAACAACATTGAAGACGAGAAAATCTGGCTACTGTA------ATTTGT---------------------------------------------------------------------------------------------------------CT-GCCCACCAAAGACA---CGA
droPer2 scaffold_12:1683222-1683441 + AGCAGCAG-----CT---------------------------------GGTGGCC------CAGGCGGCGGACGGCAGCGAGAGTGGGGCGCC---GATGTC--GAT--------------------------------------------------------------TGC-----------------------------------------------------------------------------------------------------------------CCAGGTGCAGACCCTGCAGGGGCATCAGA-T---------------------------------------CATAG------GCA-ACTTGAATCAGGTGAATATGACTG----------------------------------ATTTCCAAC-------------------------------------------------------------------------------------------------AACAGCAG---CCACAGCAGCA---------------------GCCACCACAACA------GCAAACAC-------A----ACCCCAACAGACGCTC-------------------------------------------------------------------------------------------------------------TGA-------TCG------------------------GACA------AGACCGA----------------------------------------------------------------AACGTAGAATCTA----------TT
droAna3 scaffold_13337:10557351-10557574 - AACTTCCAT----AT-GG-------------------------GCATCAGTG----------------------------------------------------------------------------------------------------------------ACGATGGCTCGGAGACT-----------------------------------------------------CACAGTGAAGACAACAAGCTG--------AT------GCACAGCAACAGCAGCAATC-----AGATGCAGCAACATCAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCAAATG------------ATG---CAGCAAC------AACAGCA----------------------------------------G------CAG------------------------------------------CAACAGCAACAG------C-A----------GT---CC---------AA---------------------------------------------------------------------------------------------TAACTTCTTT------A------GCTCCAATCACTTTCTCAACA----ATAGTCAGAATCAGAACCAA----------------------------------------------------------------AATC-AGTTGCCAAA----------
droBip1 scf7180000396691:631385-631625 - ATAACCGC-----ATCGCC-ATCGTCATCGAAAAGCGAAGCGGCCA----------------------------------------------------------------------C-----------------AAACAATAA-----------------------------------------------------------------------------------------------------------------------------------------CAG------------------------------CAGCAGCAGCAGCACAAGCGGCACTAGCATAGTCGT---------AGCCACTAACGGTATCAAAGAGAGTAACAGTAACTT----------------------------------AAGTACAAC-------------------------------------------------------AA------------------------------CAGCACCGTCAG---CAACGCCAGCAT---CA------------TCAGCCA------CACCAGCAACAACAA------C-A----------AC---CA---------TACC------A-----TATCTGGTCGGCG-----------------------------------------------------------------------------------------------TTCCAACC---AGCAGTGA-------GGTG-AG-----------------------------------------------------------------------------TT-------GTGTGATCC
droKik1 scf7180000302391:1564221-1564399 + AACATCAAC----AC-AG-------------------------CAACTAATAAAA------CAA----------------------------------------------------------------------------------------------------------AGGCCAAAGCTTAAGGAGGAA--------------------ACAAAAACAACTTCTGTAAGACATAAAACAATAATACCACAGCTTTAAACC------------------------GATAT-----TTATGC------------------------------------------------------------------------------------------------------------------------------AATTGCAAC-------------------------------------------------------------------------------------------------ACCAGGAA---GAACATCAACA---------------------GCTAGATCAATA------ACGAAATGGAGACA---------CCAACACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCTA
droFic1 scf7180000454065:89154-89378 - AACTTTCAC----AT-GG-------------------------GCATCAGCG----------------------------------------------------------------------------------------------------------------ACGATGGCTCCGAGACC-----------------------------------------------------CAGAGCGAGGACAACAAGATG--------AT------GCACAGCTCCAGCAGCAATC-----AAATGCAACAGCAACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCA---ACAT------------CAG---CAAC----------------AT------------------------------CAGCAGCAGCAGCAG---CAG---------------------CAAATCCTGCA------GCAACACCAGCAG------C-A----------GT---CA---------AA---------------------------------------------------------------------------------------------CAACTTCTTC------A------GTGCGAATCCCTTTCTCAGCA----ACAGCCAGAACCAGAACCA-----------------------------------------------------------------------------------------A
droEle1 scf7180000490546:821347-821584 - ATGATAATG----AC-GA-------------------------CAACAGGACGTG------AACCTGGTGAACTAGAACTAGAA-----------T----CAAGACAGCC-AATC--------------------------------------------------------------------------------------------------------------A---------------------------------------------CTTTAGCAACTGCAACAAG-----------------------------------------------------------------------------------------------TAC------AAATCTA-ACCATAACAACAACAACAACAAC---------------GACAGCAAC--------------AACTAGCAACAACAAC------AACAACA----------------------------------------G------CAA------------CAACAGCAACAACAATTCCAACG-----------------------------------------------------CAAC---------------------TGGCAGTAC------------------------------T-----------------GCAA----------CAAC--------------------TCCAAGTCCAGAACTAGACA-------ACCAGGTG-GAGAC------------------------------------------------------------------------------------CTTAACCA
droRho1 scf7180000779841:473239-473452 - AGCAACAGC----AGCAAC-ACAATCAGCAGCAACAGATGCAACAA----------------------------------------------------------------------C-----------------A-----------------------------------------------------------------------------------------------------------------------G--------AT------T--CAACAACAGCAGCAA-C-----AGATGCAACAACAGCAGC---------------------------------------------------------------------------------------------------------------------------A------------ACAGCAGCAACACAATCATCAGCAACAGCAGCAAC-------TTAATCATCAGCAACAGCAGCAACTTAATCATCAGCAAC---AGCAGCAA---CACAATCATCA---------------------GCAACAGCAGCA------ACTTAATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAG-CAGCAACACAATCA
droBia1 scf7180000302402:3602359-3602525 - GAGTGGCCA----GC-AA-------------------------ATACCAGAG-------------------------------------------C----CGAAATCTAT-GCGAAA-----CC----------------------CAGCCAGGGGCAACAACACAAA-----------CCTACCTGGCCAGTAAAAACAGCCACGAAGAAG------------------------------------------TGGAAACGAATAT-----------------------------ACATAA------------------------------------------------------------------------------------------------------------------------------AAATCAAGT---------------------------------ACCAGCAGC------AGCAGCA----------------------------------------G------CAA------------CAA------------------------CAGCAACA-------------C-AAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACA
droTak1 scf7180000415211:49430-49586 - CGAATGTGGTTCAGC-GG-------------------------CAT--------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------TGTCG---------------------------------------------CCCCATCACCAGCAGCAGTCGCCGCACCTGCAACAGCAACAGCAG---------------------------------------------------------------------------------------------------------------------------CAGCAGCA---ACAC------------CTA---CACC----------------AG------------------------------CAGCAGCAGCAGCAA---CACCTACACC---A------------------GCAACACCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCAA----------------------------------------------------------------CCAC-AGGCGCTGGC----------
droEug1 scf7180000409672:210090-210284 + TGGCATC-----------------------------------------GGTGGCG------CAGG----------------------------------------------------------------------------------------CGGCAGCAGTACGAG-----------CAGGACGAGGTG---------------------------TACGTCCGCCGCCTG--------------------------------------------------TGGC--------------------------------------------------------------------CATGCC----------------------CATT------CTGGG-TGTGC------------------------AATTGCAAC-------------------------------------------------------------------------------------------------AACAGGAA---CTGCAGC---------------------------------AGCAACG-CGG------C-G----------G------------------------------------------------------------------------------TCTGC-CAGTGCCCAGCCAAGATATATCTAG-TAGCTC--------AGG-------TCCGACAAGTCG--------------------------------------C--CA----------------------------------------------------------AAATGCAGCCAAAGTAGTTT
dm3 chr3L:7757404-7757651 - TGCATGCAG----AT-GG-------------------------CCACCGAA--------------------------------------------T----CGAGTCCTTC-GATCAA-----CT----------------------TTCACATGGGCATCAGCGATGATGGCTCCGAAACG-----------------------------------------------------CAGAGCGAGGACAACAAGATG--------AT------GCACACTTCCGGCAGCAATC-----TGGTGCAGCAGCAACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAACAACAA----------------------------------------------------------------------------------------------------------------CAAATCCTGCA------GCAGCATCAACAG------C-A----------GT---CA---------AA---------------------------------------------------------------------------------------------TAGCTTCTTC------A------GTTCGAATCCCTTTCTCAACA-------GTCAGAATCAGAATCAA----------------------------------------------------------------AACC-AATTGCCAAA----------
droSim2 2r:5176665-5176812 - AGAAAGTC-----GT-GG-------------------------CCAACAATA---------------------------------------------------------------------------------------ATAAAATCAATCAGCGGCAACATGGCCAG-----------CCGGCCGTGGCATT----------------------------TGCCATC--------------------------------------------------------------------------------------------------------------------------------------------------ACATCGACTAACAATCACAT----------------------------------AAGCGGCC------------------------------------CAGCAGC------AACCATA----------------------------------------A------CAA------------CA---------------------A---CAGCGGCA------ACTGGCGA-------A----ACAACAACAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droSec2 scaffold_0:71055-71299 - TACATGCAG----AT-GG-------------------------CCACCGAA--------------------------------------------T----CGAGTCCTTC-GATCAA-----CT----------------------TTCACATGGGCATCAGCGATGATGGCTCCGAAACG-----------------------------------------------------CAGAGCGAGGACAACAAGATG--------AT------GCACACTTCCGGCAGCAATC-----TGGTGCAGCAGCAACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAACA---ACAA----------------------------------------------------------------------------------------------------------------CAAATCCTGCA------GCAGCATCAACAG------C-A----------GT---CA---------AA---------------------------------------------------------------------------------------------CAGCTTCTTC------A------GTTCGAATCCCTTTCTCAACA-------GTCAGAATCAGAACCAA----------------------------------------------------------------AACC-AGTTGCCAAA----------
droYak3 X:389187-389403 + AGATGGGAG----AG-GA-------------------------GAAATGATT------------------------------------------------TT--TTTTT-CGTCAAAAGGAGCGCAGTTTCAATA-------------------AGCAA-----------GAATGGAAGGGTAGAAGAAGA--------------------AGAAAGATAAATTCAATAAATGGTAATATATCTATATATT--------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------AAT-------------------------------------------------------------------------------------------------------TAAAGCAA---GCAAGCAAGCA---------------------GAAA----GGCA------A------C-A----------A------------------------------------------------------------------------------TATAA----AGC-------------AAGCAATTAAATTTAAG------T------ATTTGAATGTTTA--------------------------------------A--CA----------------------------------------------------------GAACGCCGTAAACATCCTTT
droEre2 scaffold_4770:7639861-7640117 - ACGAAACA-----AC-GG-------------------------CCACTAACA---------------------------------------------------------------------------------------ACAA-----------------------------------------------------------------------------------------------------------------------------------------TAGCAAC---------ACAAGCAGCAGCAGCAGCAG------------TAGCAGCAACAACATAGTCATACCGGCATCGGCCACTAACGGTATCAAAGAGAGTAACAGTAACTT----------------------------------AAGTACAAC-------------------------------------------------------------------------------------------------AACAGCAA---CAGTAGCAGCA---------------------GCAACAACAGTA------GAAGGAGT--A---------GCACCAGCAATAAC--------CTCCACAATCGTGGTGACCGGCGGCAC------------------------------T-----------------------------------------------------------CCTCCATTG---AGCAGTTT-------GGTG-AG----TAGCTCTGCCCCAAAAC------------------------------------------------------------------ACCAACCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AGGATGGC-----GT-GG-------------------------CCATCGATGTCG------CTGG---------------------------------------------CGGCCAA-----------------AT-------------------------ATATGAG-----------CAG------GAG--------------------GTAA-----------------------------------------GGAATAGGTGT-----------------------------ACGTGGAAGTTCAATATGAA------------------------------------------------------------TGCAACAAATTC------TGATATA-A------------------------------------------------------------------------------------------G------------------------------CTTATTCAACAACAACAA---CTACACCAACA---------------------ACAACAACAACA------GCAAACAC-AAACA---------CAAACATTTGCTTAACT---------------------------------------------------------AT--------------------------------CCAT----AT-------AAGACCGTATCAATCCATTTGTCAATA----TT-----GGTTGAGGGCCTG----------------------------------------------------------------AACT-GACTGCCAAAGACATAATCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......GC-----GT-GG-------------------------CCATCGATGTCG------CTGG---------------------------------------------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------------------------------------------------AACT-GACTGCCAAAGAC.......1911.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACA---------------------ACAACAACAACA------GCAA............................................................................................................................................................................................................................................................................................22200.051100000
droVir3
AAGCTAGCA----AG-AT--------G----------------CCCGCCACGGTG------CT--------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTGCTGCCTC--------------------------------------------------CGGT--------------------------------------------------------------------CACA------------------------CGAC------CAAGC-TAAGC------------------------AACAACAAC-------------------------------------------------------------------------------------------------AACAACAA---CAATAGC---------------------------AGCAACAATAGCAACAA------C-AAACACA----ACAA---------------------------------------------------------------------------T----ATAATGCTTAACAACAACATGAACAA-TAGCTTATGC------A------ACTCGATCGCCCATCTAAGCGAT------------TCAAGGACCA----------------------------------------------------------------ATCT-CACTGTCA-----------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-------------------------------------------------------------------------------------------------AACAACAA---CAATAGC---------------------------AGC.............................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
AGCGTCAGA----GC-AAACAGAGA-G----------------AAAGCGACAG-GCTGGCAAATGCCAGGGACGACATTGTGGACGAGAAATCCTCGTGGTT--GTT--------------------------------------------------------------TGA------------------------TTC--------------------------------------------------------------GAAAATTGAGTTTTAGCGGCGCAAATAAA-----------------------------------------------------------------------------------------------AAT------AAAACTT-AGAATACCAACAGCAACAGCAACAGC---------AGCAGCAGCA---ACAG----------------------------------------------------------------------------------------------------------------------------CAACAGCAGCA------GCAAAAAC-------A----ACAACAACAAAAGCTCAACC---------------------------------------------------------AT--------------------------------TAAA-------------AAGGAGTTATCACCCAATTT---AGCACCA-C----A-AGCG-------CG----------------------------------------------------------------AAAT-AACGCACACAAACACAGTCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AGTGTAGGA----GT-TGTTGTAG-------------------TCGCC---------------------------------------------------------------GGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATCATCAGC---------ATCAGCAACATCAGCATCAG---------------------------------------------------------------------------------------------------------------------------------CA---ACATCAACACCACAACCAACATCAACAGC------AACAACA----------------------------------------A------CAA------------CAA------------------------CAGCAACA------A------C-AAATGCAAATGGTGG--------GCACAACTAGCTCCA----------------------TGGATG-----------------------------------------------------------------------------------------------------------------------------------------GCACCAGCCAGGTGGCCATGTGTCATGATGGTTTAGTTGGCACAGCAAATGAACT-GACTGTCTATGATGTGATTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCCA----------------------TGGATG-----------------------------------------------------------------------------------------------------------------------------------------GCACCA......................................................................1911.00101000
dp5
AAAGATACA----AC-AA-------------------------CAGCTGT---TG------CT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCCACAAATACTGCCCCAACAACAGCCACAAA-----------------------------------------------------------------------TA------CTGCC-------------------------------------AC---AACAACAACAACAA----------------------------------------------------------------------------------------------------------------CAAAAGCTA------CAACAACAACAACAA------C-A----------AC-----------------AGGCGTTG----------------------TGGGCGGCATTAGGCGTGGCTCGAGTGC-------AAAATGCAAAACAACATTGAAGACGAGAAAATCTGGCTACTGTA------ATTTGT---------------------------------------------------------------------------------------------------------CT-GCCCACCAAAGACA---CGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................A------CTGCC-------------------------------------AC---AACAACAACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
droPer2
AGCAGCAG-----CT---------------------------------GGTGGCC------CAGGCGGCGGACGGCAGCGAGAGTGGGGCGCC---GATGTC--GAT--------------------------------------------------------------TGC-----------------------------------------------------------------------------------------------------------------CCAGGTGCAGACCCTGCAGGGGCATCAGA-T---------------------------------------CATAG------GCA-ACTTGAATCAGGTGAATATGACTG----------------------------------ATTTCCAAC-------------------------------------------------------------------------------------------------AACAGCAG---CCACAGCAGCA---------------------GCCACCACAACA------GCAAACAC-------A----ACCCCAACAGACGCTC-------------------------------------------------------------------------------------------------------------TGA-------TCG------------------------GACA------AGACCGA----------------------------------------------------------------AACGTAGAATCTA----------TTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................CTTGAATCAGGTGAATATGACTG----------------------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
...................................................................................................................................................................................................................................................................................................................................................................................CTTGAATCAGGTGAATATGACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----ACCCCAACAGACGCTC-------------------------------------------------------------------------------------------------------------TGA-------TCG------------------------GAC.......................................................................................................2611.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-------------------------------------------------------------------------------------------------AACAGCAG---CCACAGCAGCA---------------------GCCA..............................................................................................................................................................................................................................................................................................................2511.001010000
...............................................................................GAGAGTGGGGCGCC---GATGTC--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
...............................................................................................................................................................................................................................................................................................................GGGGCATCAGA-T---------------------------------------CATAG------GCA-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droAna3
AACTTCCAT----AT-GG-------------------------GCATCAGTG----------------------------------------------------------------------------------------------------------------ACGATGGCTCGGAGACT-----------------------------------------------------CACAGTGAAGACAACAAGCTG--------AT------GCACAGCAACAGCAGCAATC-----AGATGCAGCAACATCAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCAAATG------------ATG---CAGCAAC------AACAGCA----------------------------------------G------CAG------------------------------------------CAACAGCAACAG------C-A----------GT---CC---------AA---------------------------------------------------------------------------------------------TAACTTCTTT------A------GCTCCAATCACTTTCTCAACA----ATAGTCAGAATCAGAACCAA----------------------------------------------------------------AATC-AGTTGCCAAA----------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................CT-----------------------------------------------------CACAGTGAAGACAACAAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.......................................................................................................................................................................ATGGCTCGGAGACT-----------------------------------------------------CACAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..............................................TCAGTG----------------------------------------------------------------------------------------------------------------ACGATGGCTCGGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC------AACAGCA----------------------------------------G------CAG------------------------------------------CAACAGC....................................................................................................................................................................................................................................................................................................20200.255050000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA----------------------------------------G------CAG------------------------------------------CAACAGCAACA................................................................................................................................................................................................................................................................................................22200.153100002
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------G------CAG------------------------------------------CAACAGCAACAG------C-A----------GT---.......................................................................................................................................................................................................................................................................2180.131001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------AACAGCA----------------------------------------G------CAG------------------------------------------CAACAGCAAC.................................................................................................................................................................................................................................................................................................22200.102020000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------AACAGCA----------------------------------------G------CAG------------------------------------------CAACAGCAACA................................................................................................................................................................................................................................................................................................25200.102000002
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC------AACAGCA----------------------------------------G------CAG------------------------------------------CAACAGCAACAG------C-.......................................................................................................................................................................................................................................................................................26120.081010000
............................................................................................................................................................................................................................................................................................................GCAGCAACATCAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................23180.061010000
...............................................................................................................................................................................................................................................................................................................GCAACATCAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA----------------------------------------G------CAG------------------------------------------CAACAGCAA..................................................................................................................................................................................................................................................................................................20200.051000001
...............................................................................................................................................................................................................................................................................................................GCAACATCAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC------AACAGCA----------------------------------------G------CAG------------------------------------------CAACAG.....................................................................................................................................................................................................................................................................................................19200.051000001
...............................................................................................................................................................................................................................................................................................................GCAACATCAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------AACAGCA----------------------------------------G------CAG------------------------------------------CAACAGCAAC.................................................................................................................................................................................................................................................................................................25200.051010000
droBip1
ATAACCGC-----ATCGCC-ATCGTCATCGAAAAGCGAAGCGGCCA----------------------------------------------------------------------C-----------------AAACAATAA-----------------------------------------------------------------------------------------------------------------------------------------CAG------------------------------CAGCAGCAGCAGCACAAGCGGCACTAGCATAGTCGT---------AGCCACTAACGGTATCAAAGAGAGTAACAGTAACTT----------------------------------AAGTACAAC-------------------------------------------------------AA------------------------------CAGCACCGTCAG---CAACGCCAGCAT---CA------------TCAGCCA------CACCAGCAACAACAA------C-A----------AC---CA---------TACC------A-----TATCTGGTCGGCG-----------------------------------------------------------------------------------------------TTCCAACC---AGCAGTGA-------GGTG-AG-----------------------------------------------------------------------------TT-------GTGTGATCCSizeHit CountTotal NormTotal
No Reads
droKik1
AACATCAAC----AC-AG-------------------------CAACTAATAAAA------CAA----------------------------------------------------------------------------------------------------------AGGCCAAAGCTTAAGGAGGAA--------------------ACAAAAACAACTTCTGTAAGACATAAAACAATAATACCACAGCTTTAAACC------------------------GATAT-----TTATGC------------------------------------------------------------------------------------------------------------------------------AATTGCAAC-------------------------------------------------------------------------------------------------ACCAGGAA---GAACATCAACA---------------------GCTAGATCAATA------ACGAAATGGAGACA---------CCAACACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCTASizeHit CountTotal NormTotal
No Reads
droFic1
AACTTTCAC----AT-GG-------------------------GCATCAGCG----------------------------------------------------------------------------------------------------------------ACGATGGCTCCGAGACC-----------------------------------------------------CAGAGCGAGGACAACAAGATG--------AT------GCACAGCTCCAGCAGCAATC-----AAATGCAACAGCAACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCA---ACAT------------CAG---CAAC----------------AT------------------------------CAGCAGCAGCAGCAG---CAG---------------------CAAATCCTGCA------GCAACACCAGCAG------C-A----------GT---CA---------AA---------------------------------------------------------------------------------------------CAACTTCTTC------A------GTGCGAATCCCTTTCTCAGCA----ACAGCCAGAACCAGAACCA-----------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droEle1
ATGATAATG----AC-GA-------------------------CAACAGGACGTG------AACCTGGTGAACTAGAACTAGAA-----------T----CAAGACAGCC-AATC--------------------------------------------------------------------------------------------------------------A---------------------------------------------CTTTAGCAACTGCAACAAG-----------------------------------------------------------------------------------------------TAC------AAATCTA-ACCATAACAACAACAACAACAAC---------------GACAGCAAC--------------AACTAGCAACAACAAC------AACAACA----------------------------------------G------CAA------------CAACAGCAACAACAATTCCAACG-----------------------------------------------------CAAC---------------------TGGCAGTAC------------------------------T-----------------GCAA----------CAAC--------------------TCCAAGTCCAGAACTAGACA-------ACCAGGTG-GAGAC------------------------------------------------------------------------------------CTTAACCASizeHit CountTotal NormTotal
No Reads
droRho1
AGCAACAGC----AGCAAC-ACAATCAGCAGCAACAGATGCAACAA----------------------------------------------------------------------C-----------------A-----------------------------------------------------------------------------------------------------------------------G--------AT------T--CAACAACAGCAGCAA-C-----AGATGCAACAACAGCAGC---------------------------------------------------------------------------------------------------------------------------A------------ACAGCAGCAACACAATCATCAGCAACAGCAGCAAC-------TTAATCATCAGCAACAGCAGCAACTTAATCATCAGCAAC---AGCAGCAA---CACAATCATCA---------------------GCAACAGCAGCA------ACTTAATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAG-CAGCAACACAATCASizeHit CountTotal NormTotal
No Reads
droBia1
GAGTGGCCA----GC-AA-------------------------ATACCAGAG-------------------------------------------C----CGAAATCTAT-GCGAAA-----CC----------------------CAGCCAGGGGCAACAACACAAA-----------CCTACCTGGCCAGTAAAAACAGCCACGAAGAAG------------------------------------------TGGAAACGAATAT-----------------------------ACATAA------------------------------------------------------------------------------------------------------------------------------AAATCAAGT---------------------------------ACCAGCAGC------AGCAGCA----------------------------------------G------CAA------------CAA------------------------CAGCAACA-------------C-AAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACASizeHit CountTotal NormTotal
No Reads
droTak1
CGAATGTGGTTCAGC-GG-------------------------CAT--------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------TGTCG---------------------------------------------CCCCATCACCAGCAGCAGTCGCCGCACCTGCAACAGCAACAGCAG---------------------------------------------------------------------------------------------------------------------------CAGCAGCA---ACAC------------CTA---CACC----------------AG------------------------------CAGCAGCAGCAGCAA---CACCTACACC---A------------------GCAACACCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCAA----------------------------------------------------------------CCAC-AGGCGCTGGC----------SizeHit CountTotal NormTotal
No Reads
droEug1
TGGCATC-----------------------------------------GGTGGCG------CAGG----------------------------------------------------------------------------------------CGGCAGCAGTACGAG-----------CAGGACGAGGTG---------------------------TACGTCCGCCGCCTG--------------------------------------------------TGGC--------------------------------------------------------------------CATGCC----------------------CATT------CTGGG-TGTGC------------------------AATTGCAAC-------------------------------------------------------------------------------------------------AACAGGAA---CTGCAGC---------------------------------AGCAACG-CGG------C-G----------G------------------------------------------------------------------------------TCTGC-CAGTGCCCAGCCAAGATATATCTAG-TAGCTC--------AGG-------TCCGACAAGTCG--------------------------------------C--CA----------------------------------------------------------AAATGCAGCCAAAGTAGTTTSizeHit CountTotal NormTotal
No Reads
dm3
TGCATGCAG----AT-GG-------------------------CCACCGAA--------------------------------------------T----CGAGTCCTTC-GATCAA-----CT----------------------TTCACATGGGCATCAGCGATGATGGCTCCGAAACG-----------------------------------------------------CAGAGCGAGGACAACAAGATG--------AT------GCACACTTCCGGCAGCAATC-----TGGTGCAGCAGCAACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAACAACAA----------------------------------------------------------------------------------------------------------------CAAATCCTGCA------GCAGCATCAACAG------C-A----------GT---CA---------AA---------------------------------------------------------------------------------------------TAGCTTCTTC------A------GTTCGAATCCCTTTCTCAACA-------GTCAGAATCAGAATCAA----------------------------------------------------------------AACC-AATTGCCAAA----------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................G-----------------------------------------------------CAGAGCGAGGACAACAAGATG--------AT------GCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAG------C-A----------GT---CA---------AA---------------------------------------------------------------------------------------------TAGCT........................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TCACATGGGCATCAGCGATGATGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAG------C-A----------GT---CA---------AA---------------------------------------------------------------------------------------------TAGCTTCTTC------A------G.....................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CAA-----CT----------------------TTCACATGGGCATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTC------A------GTTCGAATCCCTTTCT......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
................................................................................................................................................................AGCGATGATGGCTCCGAAACG-----------------------------------------------------CAGAGCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................ACATGGGCATCAGCGATTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................CATGGGCATCAGCGATGATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TGCAG----AT-GG-------------------------CCACCGAA--------------------------------------------T----CGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................CAGCAACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................GTGCAGCAGCAACAGC---------------------------------------------------------------------------------------------------------------------------AGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................19110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................GCAGCAACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CAGCAGCAACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CAACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAACAACAA----------------------------------------------------------------------------------------------------------------C............................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................AGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAACAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGAAAGTC-----GT-GG-------------------------CCAACAATA---------------------------------------------------------------------------------------ATAAAATCAATCAGCGGCAACATGGCCAG-----------CCGGCCGTGGCATT----------------------------TGCCATC--------------------------------------------------------------------------------------------------------------------------------------------------ACATCGACTAACAATCACAT----------------------------------AAGCGGCC------------------------------------CAGCAGC------AACCATA----------------------------------------A------CAA------------CA---------------------A---CAGCGGCA------ACTGGCGA-------A----ACAACAACAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
TACATGCAG----AT-GG-------------------------CCACCGAA--------------------------------------------T----CGAGTCCTTC-GATCAA-----CT----------------------TTCACATGGGCATCAGCGATGATGGCTCCGAAACG-----------------------------------------------------CAGAGCGAGGACAACAAGATG--------AT------GCACACTTCCGGCAGCAATC-----TGGTGCAGCAGCAACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAACA---ACAA----------------------------------------------------------------------------------------------------------------CAAATCCTGCA------GCAGCATCAACAG------C-A----------GT---CA---------AA---------------------------------------------------------------------------------------------CAGCTTCTTC------A------GTTCGAATCCCTTTCTCAACA-------GTCAGAATCAGAACCAA----------------------------------------------------------------AACC-AGTTGCCAAA----------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................ACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAACA---ACAA----------------------------------------------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................19200.0510010
.............................................................................................................................................................................................................................................................................................................CAGCAGCAACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAACA---A................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510010
droYak3
AGATGGGAG----AG-GA-------------------------GAAATGATT------------------------------------------------TT--TTTTT-CGTCAAAAGGAGCGCAGTTTCAATA-------------------AGCAA-----------GAATGGAAGGGTAGAAGAAGA--------------------AGAAAGATAAATTCAATAAATGGTAATATATCTATATATT--------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------AAT-------------------------------------------------------------------------------------------------------TAAAGCAA---GCAAGCAAGCA---------------------GAAA----GGCA------A------C-A----------A------------------------------------------------------------------------------TATAA----AGC-------------AAGCAATTAAATTTAAG------T------ATTTGAATGTTTA--------------------------------------A--CA----------------------------------------------------------GAACGCCGTAAACATCCTTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
ACGAAACA-----AC-GG-------------------------CCACTAACA---------------------------------------------------------------------------------------ACAA-----------------------------------------------------------------------------------------------------------------------------------------TAGCAAC---------ACAAGCAGCAGCAGCAGCAG------------TAGCAGCAACAACATAGTCATACCGGCATCGGCCACTAACGGTATCAAAGAGAGTAACAGTAACTT----------------------------------AAGTACAAC-------------------------------------------------------------------------------------------------AACAGCAA---CAGTAGCAGCA---------------------GCAACAACAGTA------GAAGGAGT--A---------GCACCAGCAATAAC--------CTCCACAATCGTGGTGACCGGCGGCAC------------------------------T-----------------------------------------------------------CCTCCATTG---AGCAGTTT-------GGTG-AG----TAGCTCTGCCCCAAAAC------------------------------------------------------------------ACCAACCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAATCGTGGTGACCGGCGGCAC------------------------------T-----------------------------------------------------------.................................................................................................................................2512.0020000002
.........................................................................................................................................................................................................................................................................................................................................................................CACTAACGGTATCAAAGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGTA------GAAGGAGT--A---------GCACCAGC....................................................................................................................................................................................................................................................................2711.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CAGTAGCAGCA---------------------GCAAC.............................................................................................................................................................................................................................................................................................................1911.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTA------GAAGGAGT--A---------GCAC........................................................................................................................................................................................................................................................................2011.0010100000
.............................................................................................................................................................................................................................................................................................................................................GCAACAACATAGTCATACCGGCATCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CAGTAGCAGCA---------------------GCAACA............................................................................................................................................................................................................................................................................................................2011.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAC-------------------------------------------------------------------------------------------------AACAGCAA---CAGTAGCAGC........................................................................................................................................................................................................................................................................................................................................2511.0010100000
...........................................................................................................................................................................................................................................................................................................................................................................CTAACGGTATCAAAGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC-------------------------------------------------------------------------------------------------AACAGCAA---CAGTAGCA..........................................................................................................................................................................................................................................................................................................................................2111.0010100000
.............................................................................................................................................................................................................................................................................................................................................................ACCGGCATCGGCCACTAACGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------------GCAACAACAGTA------GAAGGAG.........................................................................................................................................................................................................................................................................................2111.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACCGGCGGCAC------------------------------T-----------------------------------------------------------CCTCCATTG---.....................................................................................................................2411.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTA------GAAGGAGT--A---------GCACCA......................................................................................................................................................................................................................................................................2111.0011000000
................................................AACA---------------------------------------------------------------------------------------ACAA-----------------------------------------------------------------------------------------------------------------------------------------TAGCAAC---------ACAAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
...................................................................................................................................................................................................................................................................................................................................................................................ATCAAAGAGAGTAACAGTAACTT----------------------------------AA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---------------------GCAACAACAGTA------GAAGG...........................................................................................................................................................................................................................................................................................2111.0010000010
.......................................................................................................................................................................................................................................................................................................................................................AGTCATACCGGCATCGGCCACTAACGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATCGTGGTGACCGGCGGCAC------------------------------T-----------------------------------------------------------.................................................................................................................................2411.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAC-------------------------------------------------------------------------------------------------AACAGCAA---CAGTAGCAGCA---------------------GCAA..............................................................................................................................................................................................................................................................................................................2911.0011000000

Generated: 05/17/2015 at 10:28 PM