ID:

dmo_502

 Coordinate:

scaffold_6328:2034371-2034448 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dmoj_GLEANR_16894:4]; CDS [Dmoj\GI16163-cds]; exon [dmoj_GLEANR_16894:3]; CDS [Dmoj\GI16163-cds]; intron [Dmoj\GI16163-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+
mature
star
  1. dmo_502  scaffold_6328:2034376-2034394 -
  2. scaffold_6359:2146010-2146028 -
  3. scaffold_6359:4439133-4439151 -

Sense Strand Reads

##################################################------------------------------------------------------------------------------##################################################
GCAAGATGCGACAGCAAACGTTGCAATCGCTGCAAAGCAGCAAATCACTTGTGCCACAACAGTCGCAGCAGCAGCAGCAAGCGCCGCCGTCGCAGCAGCAGCAGCAGCAGCAACAACATCCACCGGAGCAGCTGTCGTCGCAGCTGAAGGAGAAGGAGCGCTGCTCGAGCCTCTCGAA
*******************************************************************((.((.((.((..((((.((....)).)).)).)).)).)).))............******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
 V110
male body
...................................................................GCAGCAGCAGCAAGCGCCGCCGTCGC..................................................................................... 26 0 1 1.00 1 1 0 0
....................................................................................................................................................GGAGAAGGAGCGCTGCTCGAGC........ 22 0 1 1.00 1 0 1 0
........................................................................................................CAGCAGCAACAACATCCAC....................................................... 19 0 3 0.33 1 1 0 0
...........................................ATCATTTGTTCCACTACAGT................................................................................................................... 20 3 8 0.13 1 0 1 0
..........................................................................................CGCAGCAGCAGCAGCAGCAGCAACAAC............................................................. 27 0 8 0.13 1 1 0 0
..................................................................................GCCGTCGTCGCAGTAGCAGCAGC......................................................................... 23 2 8 0.13 1 0 1 0
.........................................................AACAGTCGCAGCAGCAGCA...................................................................................................... 19 0 15 0.07 1 0 1 0
........................................................................................GTCGCAGCAGCAGCAGCAT....................................................................... 19 1 20 0.05 1 0 1 0
....................................................................................................................................................GGAGAAGGGGAGCTGATCG........... 19 3 20 0.05 1 0 0 1

Anti-sense strand reads

CGTTCTACGCTGTCGTTTGCAACGTTAGCGACGTTTCGTCGTTTAGTGAACACGGTGTTGTCAGCGTCGTCGTCGTCGTTCGCGGCGGCAGCGTCGTCGTCGTCGTCGTCGTTGTTGTAGGTGGCCTCGTCGACAGCAGCGTCGACTTCCTCTTCCTCGCGACGAGCTCGGAGAGCTT
*******************************************************((.((.((.((..((((.((....)).)).)).)).)).)).))............******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6328:2034321-2034498 - dmo_502 GCAAGATGCG---AC------------------------AGCAAACGT--------------------------------------TGCAATCGCTG---CA---------------------------A-AGCA-G-------------------------------CAAATCACTTGT------G------------------CCACAACAGTCGCAGCAGCAGCAGCAAGCGC---CG------------------------------------------------------------------CCGTC------------GCAG----------CAGCAG---CAGCA------GCA------GCAACAACATCCAC-------CGGAGCAGCTGTC---------------GTCGCAGC---TGAA-----------------------------------------------------------GGAGAAGGAGCGCTGCTCGAGCCT-----------CT----------CGAA
droVir3 scaffold_12928:1055257-1055413 - dvi_8360 GCAAGATGCG---TC------------------------AGCAAACGG--------------------------------------TGCAATCCCTG---CAAG------------------------CGTCCAA-GTCAA-------------------------------GC----GTGCATCAGCCGCA------------------------------------GCAGCCCGT---C------------------------------------------------------------------GAACA-------------------------GCAGCACC------AGCAGCAGCA------GCAGCAACCGGCACT-GTC------A------TC---------------CCAGCTGA------A-----------------------------------------------------------GGAGAAGGAGCGCTGCTCGAGCCT-----------GT----------CCAA
droGri2 scaffold_12473:1128-1308 - GCAG-TGGCG---CT------------------------AACACACGCTCTGA-------TCAGCAACAGCAGCAGCAGCAGCAGCGGCA---------------------------------GCACC--------------------AGCAGCAT-------------------------------CAGCA------------GCA------------------------GCAAAA---------------------------------ACGGCAGCACCAACAGCAGCAGCAGCAGCAGCGTCAA-------------------------------CATCAGCA---GCA---------GCA---GCAGCAGCAG-------------------CAGCAAAAACAGCAGCAGCAACA---------------G--------------CAGCA---------------------------------------------------------GCA-----------GC----------TAAA
droWil2 scf2_1100000004577:3108021-3108195 - GCGAGTAGCA---GC------------------------AGCAGCACC-----------------------------AGC------AGCAGTAGCAG---C---AACATCAG---------CACTGCC--------------AGC------AGCA-------------------------------CCAGCA------------------------------------GCAGCACTG---C------------------------------------------------GA-------------------------------------GTAGCAGCAGCAGCACCAGCAGC------AGTA------GCAGCAACATCAGC-------ACTGCCAGCAGCA---------------CCAGCAGCAGTAGCAGCA--------------------ACAT---------C------------------------------AGCACTGCCA-------------GCAGCACC--------AGCA
dp5 2:12228974-12229147 + GCAG-CATCA---GC------------------------AGCAAATGC-----------------------------ATC------AGCAGCAGCAACAGC---------------ACATGCAGCAG--------------CAGCAAATGCAGCAG-------------------------------CAGCA------------GCA------------------------GCAAAT-------------------------------------------------------------------------------------------GCAGCAGCAACAGCAGCAGCAAC------AACA------GCAGCAACAACAGC-------AGCAGCAGCAGCA---------------ACAGCAGCAGCAACAGCA--------------------ACA---------AC-----------------------------------AGCAGCAGCGC-----------ACCC--------AGCA
droPer2 scaffold_3:4686304-4686480 + GTCAGCAGCA---CC------------------------AACAAATGT--------------------------------------CGCAGATGTCG---CAGCAGGCGCACTATCCCGTGCAGCAG--------------C------AGCAACAG-------------------------------CAGCA------------GGA------------------------GCATGT-------------------------------------------------------------------------------------------CCGTCGCCAACAGCAGCA---GCAGCAGCACCA------GCATCAAGCGCAGC-AGCAG------------CA---------------TCAGGCGCAGCAGCAGCG---------AAGCAGCAGCA--------------------------------------------------A-CCAAAGTC-----------GT----------CAAA
droAna3 scaffold_12916:2925925-2926084 - GCAA-CAGCAGCAGC------------------------AGCAGGTGC--------------------------------------AGCAGTTGCAG---C---------------------------AGCAGGT-GCAAC-------------------------------AG-------------------------------TT---------GCAACAGCAGCAGCAACAGTT---G------------------------------------------------------------------TTGCA------------GCAA----------CAACAGCA---GCA------GCA------GCAACAACAGCAGC----------AGCAGCAGCA---------------TCAGCCGCAGCAGCAGCAA--------------CAACG--------------------------------------------------ACCACCGCCT-----------AC----------GCAT
droBip1 scf7180000396737:1834834-1834988 + AACAGCAGCA---GC------------------------AGCAGGTGC--------------------------------------AGCAATTGCAG---C---------------------------AGCAAGT-GCAAC-------------------------------AG-------------------------------TT---------GCAACAGCAGCAGCAACAGTT---G------------------------------------------------------------------CTGCA------------GCAA----------CAACAGCA---GCA------GCA------GCAACAACAACAGC-AGCAG------------CA---------------TCAGCCACAGCAGCAACAA--------------CAACG--------------------------------------------------ACCACCGCCT-----------AC----------GCAT
droKik1 scf7180000302706:2183846-2184013 - GCAGCAGGCG---GG------------------------AGCGGGCGCGGGAACGGGCGTCC------------------------------AGCAA---C---------------------------AGCAGGC-GGCAC----------AGCAG-------------------------------CAGCA------------GCA------------------------GCAACCACCG-------------------------------------------------------------------------------------------CAGGCACAGGCCCAGCAGC------AGCA------GCAGCAGGCGCCAC-------AGCAGCAGCCGAA---------------ACCGCGAC-GC---AA----------------------------------------------------------CAATAAGAATCGCACCAATAACCA-----------CA----------CGGA
droFic1 scf7180000453882:701387-701580 + AGCAGCAGCA---GC------------------------AGCAGCAGC--------------------------------------AGCAGCAGCAG---C---------------------------AACAGCA-GCAAC-------------------------------AG-------------------------------CA---------GCAACAACAGC------------------------------------------------------------AGCAACAACAGCAGCAACAA-------------------------------CAGCAGCA---GCA---------GCA---GCAGCAGCAACAGC-AGCAA------------CA------CCAGCAACATCA---------------G--------------TTGCA---G---------CAGCAAATGGCCGCCGCGCTGCAGAAGACGGAGCAGCGGACGTGGA--------GCTTCT------ACAGCGAA
droEle1 scf7180000491338:150171-150350 - GCAA-CAACAACAAC------------------------AACAGCAGC--------------------------------------AGCAGTTGCAA---C---------------------------AGCAAC--------------TAATGCT-------------------------------GCAACA------------ACA---------GCAGAGGCAGCAGCAACAATTGCCG---------------------------------------------------------------------CA---------GTTG-------------CAACAGCG---CCA------GCA------GCAGCAACAGGTGC-AGCGACAAATGCAACTGCA---------------ACAGCAGCAGC---A---G--------------CAACAACAG---------T------------------------------TGCAGTTGGT-------------ACAGCGCC--------AGCA
droRho1 scf7180000773422:50410-50568 + AGCAGCAGCA---AC------------------------AGCAACAGC--------------------------------------AACT---GCTT---C---------------------------AGCAGCA-G-------------------------------CAACAG-------------------------------CT---------------------------TCA---A------------CAGCAGCAACAGCTAC---------------------------------------AGCAGCAGCAACAGCTACA-G---------CAGCAG---CAACA------GCA------GCAGCAAAAGCCAC--------GG------------AGC---AGTA---GCA---------------G--------------CAGTAGCAG---------T---------------------AGTAGACGAG----------------------GCAGCTCC--------TCGA
droBia1 scf7180000301468:766900-767073 + ATG--TTGCC---AC------------------------AGCAGCAGC--------------------------------------AGCATTTGCT--------------------------------------------------------GGTG-------------------------------CAGCA------------GCA------------------------GCCACA---------------------------------ACCGCAGCAGCAGTTGCAGCAGCAGCAGCAGCAGCAG-------------------------------CAGCAGCA---GCA---------GCAGCAGTTGCAACAGCAAC-AT---------------GC------CCCGCAGCAACA---------------G--------------CTGCA--------------------------------------------------GCACTCGCCCTCGGACGGCGGCTCATCGAATTGCTCG
droTak1 scf7180000415141:5867-6041 - AGATGCAGCA---GA------------------------TGCAGCTGC--------------------------------------AGCAGCAGCAG---CAGCAG---------------CAACACCAGCAGCAA-----CAGCAGACGCACCAG-------------------------------CAGCA------------GCA------------------------GCAACT-------------------------------------------------------------------------------------------AAGCCAGCAGCAGCTGC------AGCAGCAACA------GCAGCAACTGACGCA-GCA------G------CA---------------GCAGCTGC------AGCA--------------------ACAGCAGCAGCAAT---------------------------------TCCAGCA-------------GCAACACC--------AGCA
droEug1 scf7180000409759:625178-625333 + CAAA-CAGCAACAGC------------------------AACA--CGC--------------------------------------AGCAGCAACAG---C---------------------------AGCAGCA-G-----------------------------------------------------CA------------ACT---------------------------------CGAAATGACCCAGCAGCAGCAGCAGCAAC---------------------------------------AGCAGCAGCAGCAGCAA-------------CAACAGCA---GCA------GCA------GCAGCACCAGGATC-AG---------------GA--ATC---------------C------GCGGCGG--------------CCAC--------------------------------------------------TGCTGCAGCCT-----------AC----------CAAA
dm3 chr3R:10558850-10559014 - ACAA-TATCAGCAGGAAC---------------------TGCGGTCAC--------------------------------------CACCATAGCAG---C---------------------------AACAAAC-ACA-----------------------------------------------ACACCA------------------ACACTCGCCACAGCAGCAACATCATC---AG------------------------------------------------------------------CAG----------------------------CAGCTGC------AGCAGCAACA------ACAGCAAGATCATC-AAC---TGCCGCAGTCATT---------------TTCGCCGC------AGCAG--------------CCGCT--------------------------------------------------GCTACCGCCT--------------T--------CGCA
droSim2 x:9977353-9977518 - GCAG-CAGCAACAAGAACACCAGCAATCACAAAAACAACAGCAAACGC--------------------------------------TGCAGTCGCAG---C---------------------------------------------------------------------------------------------------------AGCAGCAGTCGCAGCAGCAGCAGCAGCAGC---TG------------------------------------------------------------------CAGTA------------GCA----------------------------------------GCAGCAGCAGCAGC-AGCAA------------CG---------------CTAGCGTCGGCAGCAGCA--------------------------------TG------T------------CCAAAACAAGCAGCGGTAATC-----------------------------CAGC
droSec2 scaffold_13:226621-226793 + TCAAGTCGCG---CC------------------------TGCAACAGC--------------------------------------AACAGCTACTG---CAGCAG---------------CACCAGCAACAGAT-----------------ACA-------------------------------GCAGCAGCAGCACGGGGAGCAGCAACA---GGAGCAG---------------------------------------------------------------------------------------CA-------------------------GCAGCAAC------AGGAGCAGCA------GCAGCAACAGGAGCA-GCA------G---CAGCAACTGC---A------GCAGCA------GCAGCA--------------------ACT---------GC-----------------------------------AGCAGCAGCAG-----------CA----------CGAG
droYak3 3L:5349417-5349600 + TGCAGCAACG---AA------------------------AACAAACTACGAAT-------AC------------------------TACAATCGCAA---G----------CGAAATTGTGCAGCAG--------------C------AGCAACAGCAGCAGCAGCAACAATAG-------------------------------GA---------------------------GC---CA------------CAGCAGCAGCAGCAAC----------------------------------------------------------------------------------------AGCA------GCAGCAACAACA-------------------------------------TCACCGGCAACAGCAGCAACATCAACGGATCAGCA---------------------------------------GGAG--GCAACGCTGTTTGCGGCT-----------GA----------CGTT
droEre2 scaffold_4690:4989635-4989800 + GCAAGCAGGA---GC------------------------AGCAGCAGC--------------------------------------AGCAGCAGCAG---CAGC------------------------------A-G-------------------------------CAACAG-------------------------------CA---------------------------GCA---A------------CAGCAGCAGCAGCAACAGCAGCAGC---------AGCAACAG------------CAG----------------------------CAGCAG---CAGCA------GCAGCAGCAGCAGCAACAGCAGC-AGCAG------------CA---------------ACAGCAGC------AGCA--------------------ACA---------GC---------------------------AGCAGCA--A-CATCTCCA-----------GC----------ATCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GCAAGATGCG---AC------------------------AGCAAACGT--------------------------------------TGCAATCGCTG---CA---------------------------A-AGCA-G-------------------------------CAAATCACTTGT------G------------------CCACAACAGTCGCAGCAGCAGCAGCAAGCGC---CG------------------------------------------------------------------CCGTC------------GCAG----------CAGCAG---CAGCA------GCA------GCAACAACATCCAC-------CGGAGCAGCTGTC---------------GTCGCAGC---TGAA-----------------------------------------------------------GGAGAAGGAGCGCTGCTCGAGCCT-----------CT----------CGAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................GCAGCAGCAGCAAGCGC---CG------------------------------------------------------------------CCGTC------------GC.......................................................................................................................................................................................................................2611.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAAGGAGCGCTGCTCGAGC.............................2211.001100000
..............................................................................................................................................................................................................................................................................................................................................................CA------GCA------GCAACAACATCCAC-------.........................................................................................................................................................1930.331000010
.......................................................................................................................................................................................................................................................................................................................C------------GCAG----------CAGCAG---CAGCA------GCA------GCAACAAC......................................................................................................................................................................2780.131000010
.................................................................................................................................................................................................................AACAGTCGCAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................19150.071100000
.....................................................................................................................................................................................................................................................................................................................GTC------------GCAG----------CAGCAG---CAGCA------T......................................................................................................................................................................................19200.051100000
droVir3
GCAAGATGCG---TC------------------------AGCAAACGG--------------------------------------TGCAATCCCTG---CAAG------------------------CGTCCAA-GTCAA-------------------------------GC----GTGCATCAGCCGCA------------------------------------GCAGCCCGT---C------------------------------------------------------------------GAACA-------------------------GCAGCACC------AGCAGCAGCA------GCAGCAACCGGCACT-GTC------A------TC---------------CCAGCTGA------A-----------------------------------------------------------GGAGAAGGAGCGCTGCTCGAGCCT-----------GT----------CCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................GA------A-----------------------------------------------------------GGAGAAGGAGCGCTGCTCGAGCC............................2612.002200000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGA------A-----------------------------------------------------------GGAGAAGGAGC........................................1821.503000000020000000000000000000000000000000000000000000000000000010
.......................................................................................GCAATCCCTG---CAAG------------------------CGTCCAA-.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................GTCCAA-GTCAA-------------------------------GC----GTGCATCAGCC................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................CGCA------------------------------------GCAGCCCGT---C------------------------------------------------------------------GAACA-------------------------GCAGCAC.....................................................................................................................................................................................................2611.001000000000000000000000000000000000001000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGCGCTGCTCGAGCCT-----------................2111.001000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GA------A-----------------------------------------------------------GGAGAAGGAGCGCTGCT..................................2011.001000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................GTCCAA-GTCAA-------------------------------GC----GTGCATCAGCCG...............................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................ATCAGCCGCA------------------------------------GCAGCCCGT---C------------------------------------------------------------------GAAC......................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000100000000000000000000000000
.........G---TC------------------------AGCAAACGG--------------------------------------TGCAATCCCTG---CAAG------------------------C............................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................CT-GTC------A------TC---------------CCAGCTGA------A-----------------------------------------------------------GGAGAA.............................................2311.001000000000000000000000000000000000000000000000000000000000000100
......................................................................................................................................................................................ATCAGCCGCA------------------------------------GCAGCCCGT---C------------------------------------------------------------------GAACA-------------------------GC..........................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................CCTG---CAAG------------------------CGTCCAA-GTCAA-------------------------------GC----GTG........................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................G---CAAG------------------------CGTCCAA-GTCAA-------------------------------GC----...........................................................................................................................................................................................................................................................................................................................................................................1911.001000000000001000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGA------A-----------------------------------------------------------GGAGAAGGAGCGCTGCTC.................................2211.001000000000000010000000000000000000000000000000000000000000000000
.........................................CAAACGG--------------------------------------TGCAATCCCTG---CAAG------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
..........................................................................................................................................................................................GCCGCA------------------------------------GCAGCCCGT---C------------------------------------------------------------------GAACA-------------------------............................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
.....................................................................................................................................................................................................................................................................................................................................................................AGCA------GCAGCAACCGGCACT-GTC------A------TC---------------C............................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................C------------------------------------------------------------------GAACA-------------------------GCAGCACC------AGCAGCAGC.....................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................C------------------------------------------------------------------GAACA-------------------------GCAGCACC------AGCAGC........................................................................................................................................................................................2020.501000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................GCAGCACC------AGCAGCAGCA------GC............................................................................................................................................................................20200.102000200000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................ACA-------------------------GCAGCACC------AGCAGCAGC.....................................................................................................................................................................................20140.071001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................AGCACC------AGCAGCAGCA------GCAGCAA.......................................................................................................................................................................23160.061001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................A-------------------------GCAGCACC------AGCAGCAGCA------GCAGCA........................................................................................................................................................................25200.051000000000000000000000000000000000000000000000000000000000000100
.................................................................................................................................................................................................................................................................................................................................................GCAGCACC------AGCAGCAGCA------GCAGC.........................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
GCAG-TGGCG---CT------------------------AACACACGCTCTGA-------TCAGCAACAGCAGCAGCAGCAGCAGCGGCA---------------------------------GCACC--------------------AGCAGCAT-------------------------------CAGCA------------GCA------------------------GCAAAA---------------------------------ACGGCAGCACCAACAGCAGCAGCAGCAGCAGCGTCAA-------------------------------CATCAGCA---GCA---------GCA---GCAGCAGCAG-------------------CAGCAAAAACAGCAGCAGCAACA---------------G--------------CAGCA---------------------------------------------------------GCA-----------GC----------TAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................................................................................................................A---------GCA---GCAGCAGCAG-------------------CAGCAA...........................................................................................................................................20200.05110
.......................................................................AGCAGCAGCAGCAGCGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05110
......................................................................CAGCAGCAGCAGCAGCGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05110
droWil2
GCGAGTAGCA---GC------------------------AGCAGCACC-----------------------------AGC------AGCAGTAGCAG---C---AACATCAG---------CACTGCC--------------AGC------AGCA-------------------------------CCAGCA------------------------------------GCAGCACTG---C------------------------------------------------GA-------------------------------------GTAGCAGCAGCAGCACCAGCAGC------AGTA------GCAGCAACATCAGC-------ACTGCCAGCAGCA---------------CCAGCAGCAGTAGCAGCA--------------------ACAT---------C------------------------------AGCACTGCCA-------------GCAGCACC--------AGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................AGTAGCAG---C---AACATCAG---------C...................................................................................................................................................................................................................................................................................................................................................................................................................................18170.18300030
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGCAGCA--------------------ACAT---------C------------------------------AGC........................................18170.18300030
.....................................................................................................................................................................................................................................................................................................................................................................AGTA------GCAGCAACATCAGC-------.........................................................................................................................................................18170.18300030
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTAGCAGCA--------------------ACAT---------C------------------------------AG.........................................18170.12200020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTAGCAGCA--------------------ACAT---------C------------------------------AGCA.......................................20170.12200020
..............................................................................................................................................................................................................................................................................................................................................................C------AGTA------GCAGCAACATCAG.................................................................................................................................................................18170.12200020
..............................................................................................................................................................................................................................................................................................................................................................C------AGTA------GCAGCAACATCAGC-------A........................................................................................................................................................20170.12200020
........................................................................................CAGTAGCAG---C---AACATCAG---------....................................................................................................................................................................................................................................................................................................................................................................................................................................18170.12200020
........................................................................................CAGTAGCAG---C---AACATCAG---------CA..................................................................................................................................................................................................................................................................................................................................................................................................................................20170.12200020
....................................................................................................................................................................................................................................................................................................................................................................................AACATCAGC-------ACTGCCAGCAG..............................................................................................................................................2090.11100010
....................................................................................................C---AACATCAG---------CACTGCC--------------AGC------AG....................................................................................................................................................................................................................................................................................................................................................................................................2190.11100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGCAGCA--------------------ACAT---------C------------------------------AGCACT.....................................2190.11101000
.........................................................................................AGTAGCAG---C---AACATCAG---------CACT................................................................................................................................................................................................................................................................................................................................................................................................................................2190.11101000
.........................................................................................................ACATCAG---------CACTGCC--------------AGC------AGC...................................................................................................................................................................................................................................................................................................................................................................................................2090.11101000
.....................................................................................................................................................................................................................................................................................................................................................................................ACATCAGC-------ACTGCCAGCAGC.............................................................................................................................................2090.11101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------ACAT---------C------------------------------AGCACTGCCA-------------GCAG................2090.11100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------------------ACAT---------C------------------------------AGCACTGCCA-------------GCAG................2190.11100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT---------C------------------------------AGCACTGCCA-------------GCAGC...............2090.11101000
........................................................................................................AACATCAG---------CACTGCC--------------AGC------AG....................................................................................................................................................................................................................................................................................................................................................................................................2090.11100010
...................................................................................................................................................................................................................................................................................................................................................................................CAACATCAGC-------ACTGCCAGCAG..............................................................................................................................................2190.11100010
.....................................................................................................................................................................................................................................................................................................................................................................AGTA------GCAGCAACATCAGC-------ACT......................................................................................................................................................2190.11101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCA--------------------ACAT---------C------------------------------AGCACTGCCA-------------GCA.................21100.10101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGTAGCAGCA--------------------ACAT---------C------------------------------AG.........................................24100.10100010
................................................................................................G---C---AACATCAG---------CACTGCC--------------AGC------A.....................................................................................................................................................................................................................................................................................................................................................................................................21100.10101000
........................................................................................................................................................................................................................................................................................................................................................CAGCAGC------AGTA------GCAGCAACATCAG.................................................................................................................................................................24100.10100010
...............................................C-----------------------------AGC------AGCAGTAGCAG---C---AACATCAG---------....................................................................................................................................................................................................................................................................................................................................................................................................................................24100.10100010
..................................................................................................................................................................................................................................................................................................................................................................................GCAACATCAGC-------ACTGCCAGCA...............................................................................................................................................21100.10101000
.........................................................................................AGTAGCAG---C---AACATCAG---------CA..................................................................................................................................................................................................................................................................................................................................................................................................................................19170.06100010
.....................................................................................................................................................................................................................................................................................................................................................................AGTA------GCAGCAACATCAGC-------A........................................................................................................................................................19170.06100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGCAGCA--------------------ACAT---------C------------------------------AGCA.......................................19170.06100010
............................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCACCAGCAGC------A.......................................................................................................................................................................................20200.05100010
dp5
GCAG-CATCA---GC------------------------AGCAAATGC-----------------------------ATC------AGCAGCAGCAACAGC---------------ACATGCAGCAG--------------CAGCAAATGCAGCAG-------------------------------CAGCA------------GCA------------------------GCAAAT-------------------------------------------------------------------------------------------GCAGCAGCAACAGCAGCAGCAAC------AACA------GCAGCAACAACAGC-------AGCAGCAGCAGCA---------------ACAGCAGCAGCAACAGCA--------------------ACA---------AC-----------------------------------AGCAGCAGCGC-----------ACCC--------AGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAAC------........................................................................................................................................................................................20200.1530030000000
...............................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAGC-------AGCAGCA..................................................................................................................................................21200.1020200000000
.................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGC-------AGCAGCAGCA...............................................................................................................................................22200.1020200000000
.......................................................................................................................................................................................................................................................................................................................................................GCAGCAAC------AACA------GCAGCAAC......................................................................................................................................................................20200.1020200000000
......................................................................................................................................................................................................................................................................................................................................................................ACA------GCAGCAACAACAGC-------AGCAGCAGCAG..............................................................................................................................................28100.1010000100000
...........................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAAC------AACA------GCA...........................................................................................................................................................................27170.0610100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---------------ACAGCAGCAGCAACAGCA--------------------AC.....................................................................................26170.0610001000000
.............................................................................................................................................................................................................................................................................................................................................................AC------AACA------GCAGCAACAACAGC-------.........................................................................................................................................................20200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................................CAACAGC-------AGCAGCAGCAGCA---------------ACA..........................................................................................................................23200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................CAGCAAC------AACA------GCAGCAACAA....................................................................................................................................................................21200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................CAGCAGCAAC------AACA------GCAGCAACA.....................................................................................................................................................................23200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................ACA------GCAGCAACAACAGC-------AG.......................................................................................................................................................19200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................C------AACA------GCAGCAACAACAGC-------.........................................................................................................................................................19200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCA---------------ACAGCAGCA....................................................................................................................20200.0510000001000
..............................................................................................................................................................................................................................................................................................................................................................C------AACA------GCAGCAACAACAGC-------AGCA.....................................................................................................................................................23200.0510000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCA--------------------ACA---------AC-----------------------------------AGCAGCAGC.............................23200.0510000001000
...........................................................................................................................................................................................................................................................................................................................................................................................GC-------AGCAGCAGCAGCA---------------ACAGC........................................................................................................................20200.0510010000000
................................................................................................................................................................................................................................................................................................................................................................................................................A---------------ACAGCAGCAGCAACAGCA--------------------AC.....................................................................................21200.0510000000010
......................................................................................................................................................................................................................................................................................................................................................................ACA------GCAGCAACAACAGC-------AGC......................................................................................................................................................20200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---------------ACAGCAGCAGCAACAGCA--------------------.......................................................................................24200.0510000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCA--------------------ACA---------AC-----------------------------------AGCAGC................................21200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCA--------------------ACA---------AC-----------------------------------AGC...................................23200.0510000100000
..................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAAC------AACA------GCAGCA........................................................................................................................................................................23200.0510000010000
..........................................................................................................................................................................................................................................................................................................................................................................................AGC-------AGCAGCAGCAGCA---------------ACAGCA.......................................................................................................................22200.0510000000001
................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAGC-------AGCAGCAGCAG..............................................................................................................................................24200.0510100000000
........................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGCA................................................................................................................................................................................................21200.0510000010000
.................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGC-------AGCAGCA..................................................................................................................................................19200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAGC-------AGCAGCAGCAGC.............................................................................................................................................23200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGC-------AGCAGCAGCAGCA---------------AC...........................................................................................................................25200.0510010000000
.........................................................................................................................................................................................................................................................................................................................................................AGCAAC------AACA------GCAGCAACAACA..................................................................................................................................................................22200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................ACAACAGC-------AGCAGCAGCA...............................................................................................................................................18200.0510000100000
..................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAGC-------AGCAGCAGCA...............................................................................................................................................21200.0510000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCA--------------------ACA---------AC-----------------------------------AGCAGCA...............................24200.0510000100000
....................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAAC------AACA------GCAGCA........................................................................................................................................................................21200.0510010000000
......................................................................................................................................................................................................................................................................................................................................................................................CAACAGC-------AGCAGCAGCAGCA---------------ACAGCA.......................................................................................................................26200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGC-------AGCAGCAGCAGC.............................................................................................................................................22200.0510001000000
......................................................................................................................................................................................................................................................................................................................................................................................CAACAGC-------AGCAGCAGCAGCA---------------AC...........................................................................................................................22200.0510010000000
.........................................................................................................................................................................................................................................................................................................................................................................................CAGC-------AGCAGCAGCAGCA---------------ACAGCAGC.....................................................................................................................25200.0510000000001
.................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGC-------AGCAGCAGCAG..............................................................................................................................................23200.0510100000000
droPer2
GTCAGCAGCA---CC------------------------AACAAATGT--------------------------------------CGCAGATGTCG---CAGCAGGCGCACTATCCCGTGCAGCAG--------------C------AGCAACAG-------------------------------CAGCA------------GGA------------------------GCATGT-------------------------------------------------------------------------------------------CCGTCGCCAACAGCAGCA---GCAGCAGCACCA------GCATCAAGCGCAGC-AGCAG------------CA---------------TCAGGCGCAGCAGCAGCG---------AAGCAGCAGCA--------------------------------------------------A-CCAAAGTC-----------GT----------CAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................A------------GGA------------------------GCATGT-------------------------------------------------------------------------------------------CCGTCGCCAAC..........................................................................................................................................................................................................2112.002200000
...........................................................................................................CGCACTATCCCGTGCAGCAG--------------C------A........................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
............................................ATGT--------------------------------------CGCAGATGTCG---CAGCAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA--------------------------------------------------A-CCAAAGTC-----------GT----------CAAA2511.001000001
............................................ATGT--------------------------------------CGCAGATGTCG---CAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...........................................................................................................................................................................................................................................GT-------------------------------------------------------------------------------------------CCGTCGCCAACAGCAGCA---GCAGCA..........................................................................................................................................................................................2611.001010000
............................................................................................................................CAG--------------C------AGCAACAG-------------------------------CAGCA------------GGA------------------------GC....................................................................................................................................................................................................................................................................................................................2240.251010000
...................................................................................................................................................................................................................................................................................................................................................AGCAGCA---GCAGCAGCACCA------GCAT..........................................................................................................................................................................2350.201010000
............................................................................................................................CAG--------------C------AGCAACAG-------------------------------CAGCA------------GGA------------------------G.....................................................................................................................................................................................................................................................................................................................2170.141010000
.....................................................................................................................................................................................................................................................................................................................................................CAGCA---GCAGCAGCACCA------GC............................................................................................................................................................................19200.051010000
...............................................................................................................................................................................................................................................................................................................................................CAACAGCAGCA---GCAGCAGCACC.....................................................................................................................................................................................22200.051100000
.................................................................................................................................................................................................................................................................................................................................................ACAGCAGCA---GCAGCAGCACCA------..............................................................................................................................................................................21200.051010000
droAna3
GCAA-CAGCAGCAGC------------------------AGCAGGTGC--------------------------------------AGCAGTTGCAG---C---------------------------AGCAGGT-GCAAC-------------------------------AG-------------------------------TT---------GCAACAGCAGCAGCAACAGTT---G------------------------------------------------------------------TTGCA------------GCAA----------CAACAGCA---GCA------GCA------GCAACAACAGCAGC----------AGCAGCAGCA---------------TCAGCCGCAGCAGCAGCAA--------------CAACG--------------------------------------------------ACCACCGCCT-----------AC----------GCATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---------------TCAGCCGCAGCAGCAGCAA--------------C...........................................................................................2511.001010000
.........AGCAGC------------------------AGCAGGTGC--------------------------------------AGCAGTTGCAG---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
....................................................................................................................................................................................................................................................................................................................TGCA------------GCAA----------CAACAGCA---GCA------GCA------GC............................................................................................................................................................................2450.402110000
................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGC----------AGCAGCAGCA---------------T............................................................................................................................2430.331100000
........CAGCAGC------------------------AGCAGGTGC--------------------------------------AGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.201100000
...................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGC----------AGCAGCAGCA---------------TCAGC........................................................................................................................2550.201010000
.............................................................................................GCAG---C---------------------------AGCAGGT-GCAAC-------------------------------A................................................................................................................................................................................................................................................................................................................................................................................1860.171100000
GCAA-CAGCAGCAGC------------------------AGCAGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.171100000
...................................................................................................................................................................................................................................................................................................................................................AACAGCA---GCA------GCA------GCAACAAC......................................................................................................................................................................21200.153000003
.....................................................................................................................................................................................................................................................................................................................................CAA----------CAACAGCA---GCA------GCA------GCAACAACAGC...................................................................................................................................................................28100.101010000
.....................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGC----------AGCAGCAGCA---------------TCA..........................................................................................................................21100.101100000
......................................................................................................................................................................................................................................................................................................................................AA----------CAACAGCA---GCA------GCA------GCAACAACAGC...................................................................................................................................................................27110.091100000
.......................................................................................................................................................................................................................................................................................................................A------------GCAA----------CAACAGCA---GCA------GCA------GCAACAAC......................................................................................................................................................................27120.081010000
...............................................................................................................................................................................................................................................................................................................................................................A------GCA------GCAACAACAGCAGC----------AGCAGC................................................................................................................................................24200.051100000
.........................................................................................................................................................................................................................................................................................................................................................A---GCA------GCA------GCAACAACAGCAGC----------......................................................................................................................................................21200.051001000
....................................................................................................................................................................................................................................................................................................................................................ACAGCA---GCA------GCA------GCAACAAC......................................................................................................................................................................20200.051001000
.......................................................................................................................................................................................................................................................................................................................................................................CA------GCAACAACAGCAGC----------AGC...................................................................................................................................................19200.051100000
........................................................................................................................................................................................................................................................................................................................................................................A------GCAACAACAGCAGC----------AGCAG.................................................................................................................................................20200.051010000
.......................................................................................................................................................................................................................................................................................................................A------------GCAA----------CAACAGCA---GCA------GCA------G.............................................................................................................................................................................20200.051010000
........................................................................................................................................................................................................................................................................................................................................................CA---GCA------GCA------GCAACAACAGC...................................................................................................................................................................19200.051001000
droBip1
AACAGCAGCA---GC------------------------AGCAGGTGC--------------------------------------AGCAATTGCAG---C---------------------------AGCAAGT-GCAAC-------------------------------AG-------------------------------TT---------GCAACAGCAGCAGCAACAGTT---G------------------------------------------------------------------CTGCA------------GCAA----------CAACAGCA---GCA------GCA------GCAACAACAACAGC-AGCAG------------CA---------------TCAGCCACAGCAGCAACAA--------------CAACG--------------------------------------------------ACCACCGCCT-----------AC----------GCATSizeHit CountTotal NormTotal
No Reads
droKik1
GCAGCAGGCG---GG------------------------AGCGGGCGCGGGAACGGGCGTCC------------------------------AGCAA---C---------------------------AGCAGGC-GGCAC----------AGCAG-------------------------------CAGCA------------GCA------------------------GCAACCACCG-------------------------------------------------------------------------------------------CAGGCACAGGCCCAGCAGC------AGCA------GCAGCAGGCGCCAC-------AGCAGCAGCCGAA---------------ACCGCGAC-GC---AA----------------------------------------------------------CAATAAGAATCGCACCAATAACCA-----------CA----------CGGASizeHit CountTotal NormTotal
No Reads
droFic1
AGCAGCAGCA---GC------------------------AGCAGCAGC--------------------------------------AGCAGCAGCAG---C---------------------------AACAGCA-GCAAC-------------------------------AG-------------------------------CA---------GCAACAACAGC------------------------------------------------------------AGCAACAACAGCAGCAACAA-------------------------------CAGCAGCA---GCA---------GCA---GCAGCAGCAACAGC-AGCAA------------CA------CCAGCAACATCA---------------G--------------TTGCA---G---------CAGCAAATGGCCGCCGCGCTGCAGAAGACGGAGCAGCGGACGTGGA--------GCTTCT------ACAGCGAASizeHit CountTotal NormTotal
No Reads
droEle1
GCAA-CAACAACAAC------------------------AACAGCAGC--------------------------------------AGCAGTTGCAA---C---------------------------AGCAAC--------------TAATGCT-------------------------------GCAACA------------ACA---------GCAGAGGCAGCAGCAACAATTGCCG---------------------------------------------------------------------CA---------GTTG-------------CAACAGCG---CCA------GCA------GCAGCAACAGGTGC-AGCGACAAATGCAACTGCA---------------ACAGCAGCAGC---A---G--------------CAACAACAG---------T------------------------------TGCAGTTGGT-------------ACAGCGCC--------AGCASizeHit CountTotal NormTotal
No Reads
droRho1
AGCAGCAGCA---AC------------------------AGCAACAGC--------------------------------------AACT---GCTT---C---------------------------AGCAGCA-G-------------------------------CAACAG-------------------------------CT---------------------------TCA---A------------CAGCAGCAACAGCTAC---------------------------------------AGCAGCAGCAACAGCTACA-G---------CAGCAG---CAACA------GCA------GCAGCAAAAGCCAC--------GG------------AGC---AGTA---GCA---------------G--------------CAGTAGCAG---------T---------------------AGTAGACGAG----------------------GCAGCTCC--------TCGASizeHit CountTotal NormTotal
No Reads
droBia1
ATG--TTGCC---AC------------------------AGCAGCAGC--------------------------------------AGCATTTGCT--------------------------------------------------------GGTG-------------------------------CAGCA------------GCA------------------------GCCACA---------------------------------ACCGCAGCAGCAGTTGCAGCAGCAGCAGCAGCAGCAG-------------------------------CAGCAGCA---GCA---------GCAGCAGTTGCAACAGCAAC-AT---------------GC------CCCGCAGCAACA---------------G--------------CTGCA--------------------------------------------------GCACTCGCCCTCGGACGGCGGCTCATCGAATTGCTCGSizeHit CountTotal NormTotal
No Reads
droTak1
AGATGCAGCA---GA------------------------TGCAGCTGC--------------------------------------AGCAGCAGCAG---CAGCAG---------------CAACACCAGCAGCAA-----CAGCAGACGCACCAG-------------------------------CAGCA------------GCA------------------------GCAACT-------------------------------------------------------------------------------------------AAGCCAGCAGCAGCTGC------AGCAGCAACA------GCAGCAACTGACGCA-GCA------G------CA---------------GCAGCTGC------AGCA--------------------ACAGCAGCAGCAAT---------------------------------TCCAGCA-------------GCAACACC--------AGCASizeHit CountTotal NormTotal
No Reads
droEug1
CAAA-CAGCAACAGC------------------------AACA--CGC--------------------------------------AGCAGCAACAG---C---------------------------AGCAGCA-G-----------------------------------------------------CA------------ACT---------------------------------CGAAATGACCCAGCAGCAGCAGCAGCAAC---------------------------------------AGCAGCAGCAGCAGCAA-------------CAACAGCA---GCA------GCA------GCAGCACCAGGATC-AG---------------GA--ATC---------------C------GCGGCGG--------------CCAC--------------------------------------------------TGCTGCAGCCT-----------AC----------CAAASizeHit CountTotal NormTotal
No Reads
dm3
ACAA-TATCAGCAGGAAC---------------------TGCGGTCAC--------------------------------------CACCATAGCAG---C---------------------------AACAAAC-ACA-----------------------------------------------ACACCA------------------ACACTCGCCACAGCAGCAACATCATC---AG------------------------------------------------------------------CAG----------------------------CAGCTGC------AGCAGCAACA------ACAGCAAGATCATC-AAC---TGCCGCAGTCATT---------------TTCGCCGC------AGCAG--------------CCGCT--------------------------------------------------GCTACCGCCT--------------T--------CGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......ATCAGCAGGAAC---------------------TGCGGTCAC--------------------------------------CACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................25113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..AA-TATCAGCAGGAAC---------------------TGCGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008202000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................GCAAGATCATC-AAC---TGCCGCAGTCATT---------------.............................................................................................................................27111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000010002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................ATC---AG------------------------------------------------------------------CAG----------------------------CAGCTGC------AGCAGCAAC.....................................................................................................................................................................................24111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022201000000000000000000210000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
........CAGCAGGAAC---------------------TGCGGTCAC--------------------------------------CACCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2519.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009
.................................................................................................................................................................................................................................................................................................................................................................................AGCAAGATCATC-AAC---TGCCGCAGTC...............................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002300000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
............................................................................................................................................................................................ACCA------------------ACACTCGCCACAGCAGCAACATC....................................................................................................................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................GCAACATCATC---AG------------------------------------------------------------------CAG----------------------------CAGCTGC------AGC...........................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
..........................................................................................................................................................................................ACACCA------------------ACACTCGCCACAGCA............................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000003000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................ATC---AG------------------------------------------------------------------CAG----------------------------CAGCTGC------AGCAGCAACA------AC............................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................A------ACAGCAAGATCATC-AAC---TGCCGCAGTC...............................................................................................................................................2816.0060000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGGAAC---------------------TGCGGTCAC--------------------------------------CACCATAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA------ACAGCAAGATCATC-AAC---T........................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................TCATC-AAC---TGCCGCAGTCATT---------------TTCGCC.......................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................ACAGCAAGATCATC-AAC---TGCCGCA..................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................CA-----------------------------------------------ACACCA------------------ACACTCGCCACAGCAGC..........................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.......TCAGCAGGAAC---------------------TGCGGTCAC--------------------------------------CACCATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.......................................................................................ACCATAGCAG---C---------------------------AACAAAC-ACA-----------------------------------------------ACACC..............................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.................................................................................................................................................................................................................................GCAACATCATC---AG------------------------------------------------------------------CAG----------------------------CAGCTGC------AG............................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
ACAA-TATCAGCAGGAAC---------------------TGCGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GATCATC-AAC---TGCCGCAGT................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..........................................................................................................................................................................................................................................................................................................................................................................................................AGTCATT---------------TTCGCCGC------AGCAG--------------CCGC........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................CAGCAAGATCATC-AAC---TGCCGCATC................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................AACATCATC---AG------------------------------------------------------------------CAG----------------------------CAGCTGC------AGCA..........................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................TCAC--------------------------------------CACCATAGCAG---C---------------------------AACAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................AGCAACA------ACAGCAAGATCATC-A..............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................CAACA------ACAGCAAGATCATC-AAC---T........................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................................................................................................................................................................................................................................................................................................................................................................CAGCAACA------ACAGCAAGATCATC-AA.............................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TGCCGCAGTCATT---------------TTCGCC.......................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......TCAGCAGGAAC---------------------TGCGGTCAC--------------------------------------CACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................................................................................................................................ACAAAC-ACA-----------------------------------------------ACACCA------------------ACACTCGCCA.................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................ACCA------------------ACACTCGCCACAGCAGCAAC.......................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................C---------------------------AACAAAC-ACA-----------------------------------------------ACACCA------------------ACACTCGC...................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................G----------------------------CAGCTGC------AGCAGCAACA------ACAGCAAGA.....................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GCGGTCAC--------------------------------------CACCATAGCAG---C---------------------------AAC..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................ACA------ACAGCAAGATCATC-AAC---TGCC.....................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................CAACATCATC---AG------------------------------------------------------------------CAG----------------------------CAGCT......................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.............................................CAC--------------------------------------CACCATAGCAG---C---------------------------AACAAAC-.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................A-----------------------------------------------ACACCA------------------ACACTCGCCACA...............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..........................................................................................................................................A-----------------------------------------------ACACCA------------------ACACTCGCCACAGCAGC..........................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................CA-----------------------------------------------ACACCA------------------ACACTCGCCACAGCAGCAA........................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA------ACAGCAAGATCAT.................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CAC--------------------------------------CACCATAGCAG---C---------------------------AACAAAC-ACA-----------------------------------------------ACAC...............................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......................................................................................................................................................................................................................................................................................................................................................................CA------ACAGCAAGATCATC-AAC---TG.......................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................AAC-ACA-----------------------------------------------ACACCA------------------ACACTCG....................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..........................................................................................................................................A-----------------------------------------------ACACCA------------------ACACTCGCCACAGCA............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................ACACCA------------------ACACTCGCCACAGCAGCAA........................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TCAC--------------------------------------CACCATAGCAG---C---------------------------AACAAAC-ACA-----------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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ACAA-TATCAGCAGGAAC---------------------TGCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............AGGAAC---------------------TGCGGTCAC--------------------------------------CACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TC-AAC---TGCCGCAGTCATT---------------TTCGCCGC------...............................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................CCA------------------ACACTCGCCACAGCAGCAACATC....................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCAG-CAGCAACAAGAACACCAGCAATCACAAAAACAACAGCAAACGC--------------------------------------TGCAGTCGCAG---C---------------------------------------------------------------------------------------------------------AGCAGCAGTCGCAGCAGCAGCAGCAGCAGC---TG------------------------------------------------------------------CAGTA------------GCA----------------------------------------GCAGCAGCAGCAGC-AGCAA------------CG---------------CTAGCGTCGGCAGCAGCA--------------------------------TG------T------------CCAAAACAAGCAGCGGTAATC-----------------------------CAGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................AGTCGCAG---C---------------------------------------------------------------------------------------------------------AGCAGCAGTCGCT..................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................A----------------------------------------GCAGCAGCAGCAGC-A..............................................................................................................................................................16200.05100000000001000000
droSec2
TCAAGTCGCG---CC------------------------TGCAACAGC--------------------------------------AACAGCTACTG---CAGCAG---------------CACCAGCAACAGAT-----------------ACA-------------------------------GCAGCAGCAGCACGGGGAGCAGCAACA---GGAGCAG---------------------------------------------------------------------------------------CA-------------------------GCAGCAAC------AGGAGCAGCA------GCAGCAACAGGAGCA-GCA------G---CAGCAACTGC---A------GCAGCA------GCAGCA--------------------ACT---------GC-----------------------------------AGCAGCAGCAG-----------CA----------CGAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................AACAGAT-----------------ACA-------------------------------GCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................1830.3310010
..................................................................................................................................CAGAT-----------------ACA-------------------------------GCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................1930.3310010
........................................................................................................................................................................................................................................................................................................................................................................A------GCAGCAACAGGAGCA-GCA------G---C................................................................................................................................................2150.2010001
...........................................................................................................................................................................................................AGCAGCAACA---GGAGCAG---------------------------------------------------------------------------------------CA-------------------------GC..........................................................................................................................................................................................................2150.2010001
.......................................................................................................................................................................................................................................................................................................................A-------------------------GCAGCAAC------AGGAGCAGCA------GC............................................................................................................................................................................2150.2010001
.................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGGAGCA-GCA------G---CA...............................................................................................................................................1960.1710010
..............................................................................................................................................................................................................AGCAACA---GGAGCAG---------------------------------------------------------------------------------------CA-------------------------GCA.........................................................................................................................................................................................................1960.1710010
...................................................................................................................................................................................................................................................................................................................................................AGCAAC------AGGAGCAGCA------GCA...........................................................................................................................................................................1960.1710010
............................................................................................................................................................................................................................................................................................................................................................................................CA-GCA------G---CAGCAACTGC---A------GCAGCA------GCA..............................................................................................................2690.1110010
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA------GCAGCA--------------------ACT---------GC-----------------------------------AGCAGCAGCA............................2690.1110010
...............................................................................................................................................................................................................................................................................................................................................................................................GCA------G---CAGCAACTGC---A------GCAGCA------GCA..............................................................................................................24150.0710010
.......................................................................................................................................................................................................................................................................................................................................................................................AGGAGCA-GCA------G---CAGCAAC..........................................................................................................................................18150.0710010
....................................................................................................................................................................................................................A---GGAGCAG---------------------------------------------------------------------------------------CA-------------------------GCAGCAAC------..............................................................................................................................................................................................18150.0710010
...............................................................................................................................................................................................................................................................................................................................................................AGGAGCAGCA------GCAGCAAC......................................................................................................................................................................18150.0710010
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------GCAGCA--------------------ACT---------GC-----------------------------------AGCAGCAGCA............................24150.0710010
....................................................................................................................................................................................................................................................................................................................................................................................................................................CA------GCAGCA--------------------ACT---------GC-----------------------------------AGCAGCAGC.............................22200.0510010
................................................................................................................................................................................................................................................................................................................................................................................................CA------G---CAGCAACTGC---A------GCAGCA------GC...............................................................................................................22200.0510010
droYak3
TGCAGCAACG---AA------------------------AACAAACTACGAAT-------AC------------------------TACAATCGCAA---G----------CGAAATTGTGCAGCAG--------------C------AGCAACAGCAGCAGCAGCAACAATAG-------------------------------GA---------------------------GC---CA------------CAGCAGCAGCAGCAAC----------------------------------------------------------------------------------------AGCA------GCAGCAACAACA-------------------------------------TCACCGGCAACAGCAGCAACATCAACGGATCAGCA---------------------------------------GGAG--GCAACGCTGTTTGCGGCT-----------GA----------CGTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................AGCAG--------------C------AGCAACAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................21200.10220000000000
...........................................................................................................................GCAG--------------C------AGCAACAGCAGCAGCAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
........................................................................................................................GCAGCAG--------------C------AGCAACAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
..............................................................................................................................................................................................................................................................AGCAGCAGCAGCAAC----------------------------------------------------------------------------------------AGCA------GCA...........................................................................................................................................................................22200.05101000000000
droEre2
GCAAGCAGGA---GC------------------------AGCAGCAGC--------------------------------------AGCAGCAGCAG---CAGC------------------------------A-G-------------------------------CAACAG-------------------------------CA---------------------------GCA---A------------CAGCAGCAGCAGCAACAGCAGCAGC---------AGCAACAG------------CAG----------------------------CAGCAG---CAGCA------GCAGCAGCAGCAGCAACAGCAGC-AGCAG------------CA---------------ACAGCAGC------AGCA--------------------ACA---------GC---------------------------AGCAGCA--A-CATCTCCA-----------GC----------ATCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................AGCAG---CAGCA------GCAGCAGCA..............................................................................................................................................................................19200.2550000050
..AAGCAGGA---GC------------------------AGCAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.1111000000
...................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGC-AGCAG------------CA---------------ACAGC........................................................................................................................22200.1020101000
..............................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAGCAGCA.........................................................................................................................................................................................................................................................................22200.0510000100
.....................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGC-AGCAG------------CA---------------ACAGCA.......................................................................................................................21200.0511000000
.................................................................................................................................................................................................................................................................................................................................................................................................AG------------CA---------------ACAGCAGC------AGCA--------------------ACA---------...........................................................................19200.0510001000
.......GGA---GC------------------------AGCAGCAGC--------------------------------------AGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510001000
.............................................................................................................................................................................................................................................................................AGCAGCAGC---------AGCAACAG------------CAG----------------------------CA.........................................................................................................................................................................................................22200.0510000100
.............................................................................................................................................................................................................................................................CAGCAGCAGCAGCAACAGC.............................................................................................................................................................................................................................................................................19200.0510000010
......................................................................................................GC------------------------------A-G-------------------------------CAACAG-------------------------------CA---------------------------GCA---A------------CAGCAGCAGC......................................................................................................................................................................................................................................................................................26200.0510100000
...............................................................................................................................................................................................................................................................................................................................................................................................GCAG------------CA---------------ACAGCAGC------AGCA--------------------ACA---------GC---------------------------AGCAGC........................................29200.0510100000
...........................................................................................................................................................................................................................................CA---A------------CAGCAGCAGCAGCAACAGCA............................................................................................................................................................................................................................................................................23200.0510000010
.............................................................................................................................................................................G-------------------------------CA---------------------------GCA---A------------CAGCAGCAGCAGCAA.................................................................................................................................................................................................................................................................................22200.0511000000
..............................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAGC-AGCAG------------..............................................................................................................................................20200.0510001000
.....................................................................................................................................................................................................................................................................................................................................................CAG---CAGCA------GCAGCAGCAGCAG..........................................................................................................................................................................21200.0510000010
.............................................................................................................................................................................................................CA---------------------------GCA---A------------CAGCAGCAGCAGCAAC................................................................................................................................................................................................................................................................................22200.0510100000
.......................................................................................................................................................................................................................................................................................................................................................................................AGCAGC-AGCAG------------CA---------------ACAGCAGC------A..............................................................................................................22200.0510000100
................................................................................................G---CAGC------------------------------A-G-------------------------------CAACAG-------------------------------CA---------------------------GCA---.............................................................................................................................................................................................................................................................................................................18200.0511000000
............................................CAGC--------------------------------------AGCAGCAGCAG---CAGC------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000
......................................................................................................GC------------------------------A-G-------------------------------CAACAG-------------------------------CA---------------------------GCA---A------------CAGCAGCA........................................................................................................................................................................................................................................................................................24200.0510000100
...............................................................................................................................................................................................................................................................................................AGCAACAG------------CAG----------------------------CAGCAG---CAGCA------GCA....................................................................................................................................................................................25200.0510000010
...................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGC-AGCAG------------CA---------------ACAGCA.......................................................................................................................23200.0510000010
...............................................................................................................................................................................................................................................................................................................................................................................................................CA---------------ACAGCAGC------AGCA--------------------ACA---------GC---------------------------AGCA..........................................23200.0510000010
.........................................................................................................................................................................................................................................................................CAACAGCAGCAGC---------AGCAACAG------------CA........................................................................................................................................................................................................................................23200.0510000010
............................................................................................................................................................................................................................................................................CAGCAGCAGC---------AGCAACAG------------C.........................................................................................................................................................................................................................................19200.0510000010
..................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGC---------A.............................................................................................................................................................................................................................................................21200.0510001000
.....................................................................................................AGC------------------------------A-G-------------------------------CAACAG-------------------------------CA---------------------------GCA---A------------CAGCAGCAG.......................................................................................................................................................................................................................................................................................26200.0511000000
..........................................................................................................................................................................................................................................GCA---A------------CAGCAGCAGCAGCAACA...............................................................................................................................................................................................................................................................................21200.0510000010
..................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGC---------..............................................................................................................................................................................................................................................................20200.0511000000
............................................................................................AGCAG---CAGC------------------------------A-G-------------------------------CAACAG-------------------------------CA---------------------------GC.................................................................................................................................................................................................................................................................................................................21200.0510001000
............................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGC-AGC............................................................................................................................................................20200.0510000010

Generated: 05/17/2015 at 10:27 PM