ID:

dmo_500

 Coordinate:

scaffold_6328:1716283-1716433 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dmoj\GI16177-cds]; exon [dmoj_GLEANR_16907:9]; intron [Dmoj\GI16177-in]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCTGAGCCACACGTCCGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTCTATGTGTTTGTGTGTGTGCGTGTGTGTTTGTATGTTATGCATGAATTTACTTTCGACTATATACACTAATCGTTTGCCCTCTTGCCCTTAACACCTTCCACCCTCTGCTGCTGCGTCCTCATCGTCGCCCTCGTCCAGGTATCAGAGGCAACAGCGGCGCGAGGGTCTGCTGCCCAATGCGGATAATC
**************************************************..(((((((((((...(((((((((((((.(((((........))))))))))))))))..))....))).))))))))...........................................((.(((.......))).))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 V110
male body
.....................................................................................................................................................CTTCTCACCTTCCACCATCTG................................................................................. 21 3 6 0.17 1 1 0
...............................................................................TGCGTATGTGTTTGTATGTAAT...................................................................................................................................................... 22 2 9 0.11 1 0 1
.........................................................................TATGTGTGCGTGTGTGTTTGTAT........................................................................................................................................................... 23 1 20 0.10 2 0 2
.....................................TATGTGTATGTGTATGTGTAT................................................................................................................................................................................................. 21 0 20 0.05 1 1 0
.........................TATGTGTATGTGTATGTGTAT............................................................................................................................................................................................................. 21 0 20 0.05 1 1 0
...............................TATGTGTATGTGTATGTGTAT....................................................................................................................................................................................................... 21 0 20 0.05 1 1 0
................................................................................................GTTGTGCAGGAACTTACTT........................................................................................................................................ 19 3 20 0.05 1 0 1

Anti-sense strand reads

GGACTCGGTGTGCAGGCACATACACATACACATACACATACACATACACATACACATACACAGATACACAAACACACACACGCACACACAAACATACAATACGTACTTAAATGAAAGCTGATATATGTGATTAGCAAACGGGAGAACGGGAATTGTGGAAGGTGGGAGACGACGACGCAGGAGTAGCAGCGGGAGCAGGTCCATAGTCTCCGTTGTCGCCGCGCTCCCAGACGACGGGTTACGCCTATTAG
**************************************************..(((((((((((...(((((((((((((.(((((........))))))))))))))))..))....))).))))))))...........................................((.(((.......))).))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V041
embryo
...........................................................................................................................TAGGTGATTAGCAAACGA.............................................................................................................. 18 2 7 0.14 1 1 0
........................................................................................................................ATTTTTGTGATTAGCTAACGG.............................................................................................................. 21 3 8 0.13 1 0 1
........................................................................................................................................................................................AGCAGCGGGAACAGGTGC................................................. 18 2 8 0.13 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6328:1716233-1716483 - dmo_500 CCTGAGCCACACGTCCGTGTATGTGTATGTGT--AT-----GTG----TA----------------T----GTGT----------ATGTGTATGTG--TATG--T----GTCT----A--------------TG----TGTTTGTGTGTGTG--------CGTGTGTGTT-----------------------T----------------------------GTAT------------GTTAT-------GCATGAATTTAC-TTTCGACT--------------------------------------------------------------------------------------------------------------------------------------------A------TATACACTAATC-----------------GTTTGCCCTCTT------------G---------------CCCTTA-A------------------------------------------------CACCTTCC----------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------CCCTCTGCTGCTGC-GTC------------C--------------------TCATCGTCGC------CCT---------CGTCCAGGTATCAGAGGCAACAGCGGCGCGAGGGTCTGCTGCCC----------AATG-CG---GATAATC
droVir3 scaffold_12928:749921-750184 - dvi_8333 CTACACG-----C------------TGCGTAACGG-------T--G--TGCGTGTGTGTG------C--GTGCAT----GTGTG--------------T--GTGCAATTGGCA----G--------------TG----TGTAAAAGTCATAG--------TGTT---------------------ATG------------G------------------TGTGAGT------------GTAAT-------GCATGACTCCGT-CAAGGACA-----------AGACAG-----------------------------------------------------------------------------------------------------------------------------------------TAATC-----------------GTTTG---------CCC----TATGCCCTTTTATCG------------------------------------------------------------------------------CCGGGAACTGCGGATGC------------------------------AGTCGTAGTCGTCGTCGTA-C-------------------------------------------------GATTCG----------------------------------------------------------------------------------------------------------------------TGGTGCTCG-CCCC-----ACTTCTGCAGGTATCAGCGGCAGCAGCGTCGGGAGGGCCTGCTTCCT----------AATG-CG---GACAATC
droGri2 scaffold_14853:7753501-7753758 + GTGTGTG------------------TGTGTGT--GT-----GTG----TG--TGTGT------GTGTGTGTGTGT----GTGT----T--------TGT----GT------------GTGTG--------TATG----TGTTTGTGTGT----------GT------ACA-----------------------TGTATGTG------------------T--GTGG--------ATATATTAT-------GCATGATTT-GCCAAGTGACA-----------ACACAC-----------------------------------------------------------------------------------------------------------------------------------------TTATCATATATATAT-------A------TTTGT-GCCC----TTTGCCC---------------TTT-T------------------------------------------------CGCCTTCTT-------CCCCTCGAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTG------------TCGTCC--------------------TTGACGTCGTCC--------------TTGCTGCAGGTATCAGCGCCAGCAACGTCGGGAGGGTCTGCTGCCC----------AATG-CG---GACAATT
droWil2 scf2_1100000004963:3125131-3125342 - CATGT-G------------------TGTATAT--GT-----GTG----TG--TGTGT--GT--GTATGTGTGTGT------GT----G----------T--GTGT------------ATGTG--------TGGG----TGG------GGATGTG------TA------TA---------------------CGTGTTTGGG------------------GGTCTAT------------GTT-------------------------TT--------------------------------------------------------------------------------------------------------------------------------------------CCATTGTTAACTGGCATTGTTC-----------------CATT--------------------GCTTTGTTGTTA----------------------------------------------------CTATTGCTG---------------------------CTGACGT------------------------------TGATGTTGCTGTTGTCGCT-T-------------------------------------------------GTCATG-----------------------------------------------------------------------------------------------------------------TCG------------CCCTGTCCC-----CAACAGCAATAGCAGCAGCAACAGCAG-----------------------------------------G
dp5 XR_group6:7913012-7913214 - CACTT-C----CGTG----TGAATATATTTGT--AT-----CTG----CA----------------TCTGTGTGT------GT----TTGTGTGTG--GGTG--T----TTAAGGGCG--T----------GTG----TGT------GTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTATGTCCCTTGCAAAATGTCTGTG---------------CC-------------------------------------------TGACTGCTTAATGACATTGTAC-----------------GTGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTCCCTTACGTCTACG---------------------------------------------------------------------------------------TCTACGTCTA--CGCTCTGCATCT--------------------------------------------------------------------GTATTTGTATCTGCGGCCGTGTC-----------------------------------CG------TGTA
droPer2 scaffold_2:684464-684649 + CCAAAACTGTATGTG------------C--G---G-------T--G--TGTGTGTGTGTG------T--CTGTGT----GTGTCTGTG----------T--G--T------------G--T----------CTG--TGT--------GTGTGTGTGT--GT------TTA-------TCAGTGGGATTGCGGTTGTGTA-------------------------------------------T-------GCGTGATATTGT-GTTTGGCA-----------ATGCAG-----------------------------------------------------------------------------------------------------------------------------------------TTGCT-----------------GCTGG---------CGA----GAATGCATTTTATGCCCTGCTCTTG-C------------------------------------------------TGCTTTCT----------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------------CTTTCTGTTGC---------------------------------------------------------------------------------------------------------------------------------------TGCG
droAna3 scaffold_13335:1386454-1386629 + GCCTGTG------------------TCTGTGT--CT-----GTG----TA--TGTGT------GTGTGTGTGTGT----GTGT------------------G--T----GTAGGTGAG--T----------GGG----TGA------GTATG--------CG------TG-------------------------------CGTGTCCTGTTCTTTTGTTAC-------AAC---------------------------------------------------------------------------------------------------------------------------------------AATTTTT-GCGCA-------------------------------------------------------------------------------------------ATTT---------------CTT-T------------------------------------------------TG---------------------------TG------------------------------------------------------------------------------------------------------------------CTTTGTGCAGCCGC-----------------------------CGCCAACGCTTCCATTTTCCATTGCCGCTGTC------------A--------------------TAA------------------------------------------------------------------------------------CT---GTCGCTC
droBip1 scf7180000396712:1708698-1708907 - GTATGTG------------------TATGTGT--AT-----GTG----TA--TGTGT------ATGTGTATGTGT----ATGT------------GTAT--GTGT------------AT---GG------TGTA----TGT--GTATGTGTA--------T------GTG-----------------------TATATGTG------------------A----------GCAACTATACTAGGGTAGGAGCATGGACCTAA-GTTGTGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACG-GCCGTGAAGCAATGCTTCGCACACCTCTGGCGCCCTACTCCTCCCG---------------------------------------------------------------------CCCATTAC----GC-GCC------------C--------TCTCCAGGGCTCTCAG------------CT-----------------------------------------------------------------------------ACGT
droKik1 scf7180000302610:1439912-1440111 + CACAAAG------------------AACACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTTGTGTACAGACATGTGTGTGAAACCCCCGCGAATTGTCTGTGAAATGTGTGTCGCTAATCGAATTGTT-ACT------------------------------------------------------------------------------CTT------------A---------------CCCCAA-A-A--------------------------------------ACCCCACCT---------------------------GCTGCTG------------------------------CTGACCAACCACCACCCA----------------------------------------------------------------CCATCCA-------------------------------------------------------------------------------------------------------------------------------CCATCAGGTACCAGCGACAGCAGCGCAAGGAGGGCCTTCTACCC----------AATG-CC---GACAATT
droFic1 scf7180000453829:364152-364375 + GTCCATA------------------TGTGCAT--GA-----GTG----CG--AGTGT--------GTGTGTGTGT----GTGT------------GTGT--GTGT------------AT------------GGTTGTGT----------CTTTGTGTGTGT------GTTGCCTTCGCTGTTTCGCCTGCGGTATTGAA-------------------------------------------C-------AGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTGTCGCCTTCCCAAAGATCAACAATTTAATGGGCATCGTTGTCCTTGTATC-GTCCTGTTGAACTCCCTCCCCCTCCTCT------------------------------------CTG------------------------------------------------CTCTCTCCTCTTCC-CTT------------TTCCCACCCCCT--------------------------------------------------------------------------------------------------------CCCC
droEle1 scf7180000491011:165792-165994 + TGTAC-G----CATT----------CAGATAT--TT-----ATA----CA--T------AT--ATATATTTGTGT----------GAGTGAGTGTG--TGTG--T----GTCAAT----------------TTA----TAT--ATATGTGTA--------CA------TA-----------------------TATGTAAG----------------------------AACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGC----------GCTCGTCAATTGCAAAC--------------GCGTCGCTGCCG----------------------------------------------------ACGTCGACT---------------------------GCGGCAG------------------------------CGACGTCGCTGCCATTGA----------------------------------------------------------------ATTTTCA-------------------------------------------------------------------------------------------------------------------------------CTGTCAAGGTCGA--------------ACGTTGTTCTGATGCGC----------AACG------------C
droRho1 scf7180000776942:182944-183119 + ATATATG------------------TATGTAC--GGGCAAGGAG----TA--TGTTTGTATGTGTGCCATTGTGTTGCCATCA----------------------------------C--TG--------TG------T----------GTTTCTG----T------GTG-------------------------------TGTTTTTTATTTTTCA--CA------------------------------------TTTAT-TTTCT--------------------------------------------------------------------------------------------------------------------------------------------AGTTTGCTCGCT-------------------------------------------------------------------------------------------CGTTGTTTTGTTAACTCTTATTTAGTTTTCTTTG---------------------------CGTCTT------------------------------CAGCGTCGCTGCCTTCGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCA
droBia1 scf7180000302421:792204-792424 - CCTGACC------------------CCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCGACC-----------CCAAGAACATAGAACACGATGTTTTGTGTACAGACATGAGTGTGCGAACCCCGCGGACTGTCAGTTGAACT--TGTCGCTAATCGAATTGTT-ATTCC-------------------------------------------------------------------------------------------ACCC---------------CCT-C------------------------------------------------TGCCACCCA-------ACCACCGAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCCACACCTCC---------------------------------------------------------GTGGTGC-------------ACCGCCACAGGTACCAGCGACAGCAGCGCAAGGAGGGCCTACTGCCC----------AACG-CA---GACAACT
droTak1 scf7180000414425:25654-25861 - CCTGACC------------------CCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGACC-----------CCAAAAACAGAGAACACGATGTTTTGTGTACAGACATGAGTGTGTGAACCCCGCGAACTGTCAGTTGAACT--TGTCGCTAATCGAATTGTT-ATTCC-------------------------------------------------------------------------------------------ACCC---------------ACT-C------------------------------------------------TGCCACCCACT-CTGCACCACCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCA-------------------------------------------------------------------------------------------CCCACAGGTACCAGCGACAACAGCGCAAGGAGGGCCTACTGCCC----------AATG-CC---GACAATC
droEug1 scf7180000409033:349291-349560 - CCTGACC------------------CCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCGACCCACCACCCCCCCCAAAAACAGAGAACACGATGTTTTGTGTACAGACATGAGTGTGTGAACCCCGCGAACTGTCATTTGAACT--TGTCGCTAATCGAATTGTT-ATTCC-------------------------------------------------------------------------------------------ATCC---------------ACT-CTGTCCATCTGCCCATCTGCCACCTAACCAA------------------------CCACTACTGAACCATCGAAC-------------------------------------------------------------------------------------------------------------GACCCG----------------------------CAACG----------AAAC-------------------------------------------CA--------------------ATGTGGTGGTGC--------------TTGCTACAGGTACCAGCGACAGCAGCGCAAGGAGGGCCTACTGCCC----------AATG-CC---GACAATT
dm3 chrX:15315624-15315833 - ATGTGCT------------------TGTGTGC--CA-----CTGTG--TGTGTGTGTGTG------T--GTGTGT----GTGT----------GTG--TGCG--T------------G--T----------AAG----TGT------GTGTGTGTG----T------GTG-----------------------------------TGCTGGTGCT---------GT------------GTT---------------------------------------------------------------------------------------------------------------G--TGTTTGCAACTAAATTGTT-AGA--------------------------------------------CA-----------------------------------------------TTTT--------------A-ATT-AATT-------------------------------------------------TCC--------------------------------------------------------------------------------ACTTTAATGTTTACTTA------------------------------GCTAAA--------------------------------------------TGTT----------------TT-----------------------------------------------CCT------------CCCTG-------CCTGCAGGCAATAACAACAACAACAACGGAGA---------CTT----------CGAG-CG---G---ATA
droSim2 x:12871183-12871318 + TGCG-TA------------------TGCGCAT--TA-----TTA----GG--TGCGT--------ATGCGTGAGT----GTGTG------------TGT--GTGT------------TT------------------------------------------------GGCTCTATTT------TCATGTTACCTTCGCATA------------------C--ACGCTCCCACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT------------C---------------CC---C-C----------------------------------TACCCCACCTCCTCTG--------------------------------G------------------------------CTGGTC--------------------------------------------------------------------------------------------------------------------------------------CCCCTCCC---------------------------------------------------------CT--------------------------------------------------------------------CG------ATCA
droSec2 scaffold_4:1309360-1309566 - ATGTGTG------------------TGTGTGT--GT-----GCG----T----------------------GTGT----GTGCG------------TAT--G--T--------------------------------------------------------------GTTTTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTTT--TTTCGTTAGCTAAATTGTTTATTTTATTAGCAATTTGGAGAATTTATGTGCGCGACA------TGTGAAATTTGC-----------------GCTTCACCCTTT-GCCC----TCTGTTC---------------TCT-T------------------------------------------------TGCCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCCCCTGC-CC----------------------TCT-----GTACTTGG------------CCACGCCCC-------CAGGC------CGCAGAAGCTAAAG------------------------------------GCGGCG
droYak3 3L:6411021-6411266 - CGTGT-G------------------TGT-TGT--GT-----GTG----C----C-----------CCGTCCGTGTATCCGTAT--CCG----------T--G--A-----------------GATACGCGTGAG----TGT------------CCG----C------GTC-----------------------------------TGCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCGCACATCATCATCGCCGTACACCATCCGCCGTC-------CAACATCCA-CCAT-----------------------------CATCATCATCATCATC-GCCATCGCCATCGACATCATCGTCGTCT--------------------TCGTCGTCGTCGTCGTCATCGTCATCAGAGATCAGAGATCTGCGGCGGA----------GTGTGTGCCAGAAAAGAGGA---A----TCGTGAATCAGA
droEre2 scaffold_4845:17095874-17096126 - CCACT-G--TGCGTC------------C------G-------T--GTGTG--TGTGTGTGT--GTGCGTCCGTGT----------GTG----------T--G--T------------GTGT----------GTG--TGT----------GTGTGTGTGTGT------GTCACCATCC------GGATGCTGCTTGTGTGGG------------------T--GTGC------------GT-------------------------------------------------------------------------------------------------------------------------------------T-ACT------------------------------------------------------------------------------CTCAACCGTCAGTCCCGTC--------------G-ATC-TGTC------------CGTCGTCCC-TCGTCCCT--------------CATCCATCG-------TCCTTC-----------------------------------------------------------------------------------------------------------------GACCTACGCTCCTCGTCC------TTGCGCCCCTCCACTCCGCCAACAAAGGACG-------------------------------------------------------------------------------------------TCCGCACGG-------------------AGAA------------AACGGCAACAGCTGCTC---GACAATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CCTGAGCCACACGTCCGTGTATGTGTATGTGT--AT-----GTG----TA----------------T----GTGT----------ATGTGTATGTG--TATG--T----GTCT----A--------------TG----TGTTTGTGTGTGTG--------CGTGTGTGTT-----------------------T----------------------------GTAT------------GTTAT-------GCATGAATTTAC-TTTCGACT--------------------------------------------------------------------------------------------------------------------------------------------A------TATACACTAATC-----------------GTTTGCCCTCTT------------G---------------CCCTTA-A------------------------------------------------CACCTTCC----------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------CCCTCTGCTGCTGC-GTC------------C--------------------TCATCGTCGC------CCT---------CGTCCAGGTATCAGAGGCAACAGCGGCGCGAGGGTCTGCTGCCC----------AATG-CG---GATAATCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................TA----------------T----GTGT----------ATGTGTATGTG--TAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000100
.........................TATGTGT--AT-----GTG----TA----------------T----GTGT----------AT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000100
...............................T--AT-----GTG----TA----------------T----GTGT----------ATGTGTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000100
droVir3
CTACACG-----C------------TGCGTAACGG-------T--G--TGCGTGTGTGTG------C--GTGCAT----GTGTG--------------T--GTGCAATTGGCA----G--------------TG----TGTAAAAGTCATAG--------TGTT---------------------ATG------------G------------------TGTGAGT------------GTAAT-------GCATGACTCCGT-CAAGGACA-----------AGACAG-----------------------------------------------------------------------------------------------------------------------------------------TAATC-----------------GTTTG---------CCC----TATGCCCTTTTATCG------------------------------------------------------------------------------CCGGGAACTGCGGATGC------------------------------AGTCGTAGTCGTCGTCGTA-C-------------------------------------------------GATTCG----------------------------------------------------------------------------------------------------------------------TGGTGCTCG-CCCC-----ACTTCTGCAGGTATCAGCGGCAGCAGCGTCGGGAGGGCCTGCTTCCT----------AATG-CG---GACAATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................G-------T--G--TGCGTGTGTGTG------C--GTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000100000000000000000000000000000000000000000000000000000
droGri2
GTGTGTG------------------TGTGTGT--GT-----GTG----TG--TGTGT------GTGTGTGTGTGT----GTGT----T--------TGT----GT------------GTGTG--------TATG----TGTTTGTGTGT----------GT------ACA-----------------------TGTATGTG------------------T--GTGG--------ATATATTAT-------GCATGATTT-GCCAAGTGACA-----------ACACAC-----------------------------------------------------------------------------------------------------------------------------------------TTATCATATATATAT-------A------TTTGT-GCCC----TTTGCCC---------------TTT-T------------------------------------------------CGCCTTCTT-------CCCCTCGAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTG------------TCGTCC--------------------TTGACGTCGTCC--------------TTGCTGCAGGTATCAGCGCCAGCAACGTCGGGAGGGTCTGCTGCCC----------AATG-CG---GACAATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................TGT----GTGT----T--------TGT----GT------------GTGTG--------TA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101
droWil2
CATGT-G------------------TGTATAT--GT-----GTG----TG--TGTGT--GT--GTATGTGTGTGT------GT----G----------T--GTGT------------ATGTG--------TGGG----TGG------GGATGTG------TA------TA---------------------CGTGTTTGGG------------------GGTCTAT------------GTT-------------------------TT--------------------------------------------------------------------------------------------------------------------------------------------CCATTGTTAACTGGCATTGTTC-----------------CATT--------------------GCTTTGTTGTTA----------------------------------------------------CTATTGCTG---------------------------CTGACGT------------------------------TGATGTTGCTGTTGTCGCT-T-------------------------------------------------GTCATG-----------------------------------------------------------------------------------------------------------------TCG------------CCCTGTCCC-----CAACAGCAATAGCAGCAGCAACAGCAG-----------------------------------------GSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................T--GTATGTGTGTGT------GT----G----------T--GT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.10200002
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAATAGCAGCAGC..................................................18150.07100010
...GT-G------------------TGTATAT--GT-----GTG----TG--TGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100
..TGT-G------------------TGTATAT--GT-----GTG----TG--TGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100001
dp5
CACTT-C----CGTG----TGAATATATTTGT--AT-----CTG----CA----------------TCTGTGTGT------GT----TTGTGTGTG--GGTG--T----TTAAGGGCG--T----------GTG----TGT------GTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTATGTCCCTTGCAAAATGTCTGTG---------------CC-------------------------------------------TGACTGCTTAATGACATTGTAC-----------------GTGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTCCCTTACGTCTACG---------------------------------------------------------------------------------------TCTACGTCTA--CGCTCTGCATCT--------------------------------------------------------------------GTATTTGTATCTGCGGCCGTGTC-----------------------------------CG------TGTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CCAAAACTGTATGTG------------C--G---G-------T--G--TGTGTGTGTGTG------T--CTGTGT----GTGTCTGTG----------T--G--T------------G--T----------CTG--TGT--------GTGTGTGTGT--GT------TTA-------TCAGTGGGATTGCGGTTGTGTA-------------------------------------------T-------GCGTGATATTGT-GTTTGGCA-----------ATGCAG-----------------------------------------------------------------------------------------------------------------------------------------TTGCT-----------------GCTGG---------CGA----GAATGCATTTTATGCCCTGCTCTTG-C------------------------------------------------TGCTTTCT----------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------------CTTTCTGTTGC---------------------------------------------------------------------------------------------------------------------------------------TGCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............GTG------------C--G---G-------T--G--TGTGTGTGTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19120.081000001
.............................................G--TGTGTGTGTGTG------T--CTGTGT----G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
droAna3
GCCTGTG------------------TCTGTGT--CT-----GTG----TA--TGTGT------GTGTGTGTGTGT----GTGT------------------G--T----GTAGGTGAG--T----------GGG----TGA------GTATG--------CG------TG-------------------------------CGTGTCCTGTTCTTTTGTTAC-------AAC---------------------------------------------------------------------------------------------------------------------------------------AATTTTT-GCGCA-------------------------------------------------------------------------------------------ATTT---------------CTT-T------------------------------------------------TG---------------------------TG------------------------------------------------------------------------------------------------------------------CTTTGTGCAGCCGC-----------------------------CGCCAACGCTTCCATTTTCCATTGCCGCTGTC------------A--------------------TAA------------------------------------------------------------------------------------CT---GTCGCTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................TGT--CT-----GTG----TA--TGTGT------GTGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20160.061100000
............................GTGT--CT-----GTG----TA--TGTGT------GTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20160.061100000
...............................T--CT-----GTG----TA--TGTGT------GTGTGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
droBip1
GTATGTG------------------TATGTGT--AT-----GTG----TA--TGTGT------ATGTGTATGTGT----ATGT------------GTAT--GTGT------------AT---GG------TGTA----TGT--GTATGTGTA--------T------GTG-----------------------TATATGTG------------------A----------GCAACTATACTAGGGTAGGAGCATGGACCTAA-GTTGTGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACG-GCCGTGAAGCAATGCTTCGCACACCTCTGGCGCCCTACTCCTCCCG---------------------------------------------------------------------CCCATTAC----GC-GCC------------C--------TCTCCAGGGCTCTCAG------------CT-----------------------------------------------------------------------------ACGTSizeHit CountTotal NormTotal
No Reads
droKik1
CACAAAG------------------AACACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTTGTGTACAGACATGTGTGTGAAACCCCCGCGAATTGTCTGTGAAATGTGTGTCGCTAATCGAATTGTT-ACT------------------------------------------------------------------------------CTT------------A---------------CCCCAA-A-A--------------------------------------ACCCCACCT---------------------------GCTGCTG------------------------------CTGACCAACCACCACCCA----------------------------------------------------------------CCATCCA-------------------------------------------------------------------------------------------------------------------------------CCATCAGGTACCAGCGACAGCAGCGCAAGGAGGGCCTTCTACCC----------AATG-CC---GACAATTSizeHit CountTotal NormTotal
No Reads
droFic1
GTCCATA------------------TGTGCAT--GA-----GTG----CG--AGTGT--------GTGTGTGTGT----GTGT------------GTGT--GTGT------------AT------------GGTTGTGT----------CTTTGTGTGTGT------GTTGCCTTCGCTGTTTCGCCTGCGGTATTGAA-------------------------------------------C-------AGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTGTCGCCTTCCCAAAGATCAACAATTTAATGGGCATCGTTGTCCTTGTATC-GTCCTGTTGAACTCCCTCCCCCTCCTCT------------------------------------CTG------------------------------------------------CTCTCTCCTCTTCC-CTT------------TTCCCACCCCCT--------------------------------------------------------------------------------------------------------CCCCSizeHit CountTotal NormTotal
No Reads
droEle1
TGTAC-G----CATT----------CAGATAT--TT-----ATA----CA--T------AT--ATATATTTGTGT----------GAGTGAGTGTG--TGTG--T----GTCAAT----------------TTA----TAT--ATATGTGTA--------CA------TA-----------------------TATGTAAG----------------------------AACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGC----------GCTCGTCAATTGCAAAC--------------GCGTCGCTGCCG----------------------------------------------------ACGTCGACT---------------------------GCGGCAG------------------------------CGACGTCGCTGCCATTGA----------------------------------------------------------------ATTTTCA-------------------------------------------------------------------------------------------------------------------------------CTGTCAAGGTCGA--------------ACGTTGTTCTGATGCGC----------AACG------------CSizeHit CountTotal NormTotal
No Reads
droRho1
ATATATG------------------TATGTAC--GGGCAAGGAG----TA--TGTTTGTATGTGTGCCATTGTGTTGCCATCA----------------------------------C--TG--------TG------T----------GTTTCTG----T------GTG-------------------------------TGTTTTTTATTTTTCA--CA------------------------------------TTTAT-TTTCT--------------------------------------------------------------------------------------------------------------------------------------------AGTTTGCTCGCT-------------------------------------------------------------------------------------------CGTTGTTTTGTTAACTCTTATTTAGTTTTCTTTG---------------------------CGTCTT------------------------------CAGCGTCGCTGCCTTCGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCASizeHit CountTotal NormTotal
No Reads
droBia1
CCTGACC------------------CCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCGACC-----------CCAAGAACATAGAACACGATGTTTTGTGTACAGACATGAGTGTGCGAACCCCGCGGACTGTCAGTTGAACT--TGTCGCTAATCGAATTGTT-ATTCC-------------------------------------------------------------------------------------------ACCC---------------CCT-C------------------------------------------------TGCCACCCA-------ACCACCGAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCCACACCTCC---------------------------------------------------------GTGGTGC-------------ACCGCCACAGGTACCAGCGACAGCAGCGCAAGGAGGGCCTACTGCCC----------AACG-CA---GACAACTSizeHit CountTotal NormTotal
No Reads
droTak1
CCTGACC------------------CCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGACC-----------CCAAAAACAGAGAACACGATGTTTTGTGTACAGACATGAGTGTGTGAACCCCGCGAACTGTCAGTTGAACT--TGTCGCTAATCGAATTGTT-ATTCC-------------------------------------------------------------------------------------------ACCC---------------ACT-C------------------------------------------------TGCCACCCACT-CTGCACCACCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCA-------------------------------------------------------------------------------------------CCCACAGGTACCAGCGACAACAGCGCAAGGAGGGCCTACTGCCC----------AATG-CC---GACAATCSizeHit CountTotal NormTotal
No Reads
droEug1
CCTGACC------------------CCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCGACCCACCACCCCCCCCAAAAACAGAGAACACGATGTTTTGTGTACAGACATGAGTGTGTGAACCCCGCGAACTGTCATTTGAACT--TGTCGCTAATCGAATTGTT-ATTCC-------------------------------------------------------------------------------------------ATCC---------------ACT-CTGTCCATCTGCCCATCTGCCACCTAACCAA------------------------CCACTACTGAACCATCGAAC-------------------------------------------------------------------------------------------------------------GACCCG----------------------------CAACG----------AAAC-------------------------------------------CA--------------------ATGTGGTGGTGC--------------TTGCTACAGGTACCAGCGACAGCAGCGCAAGGAGGGCCTACTGCCC----------AATG-CC---GACAATTSizeHit CountTotal NormTotal
No Reads
dm3
ATGTGCT------------------TGTGTGC--CA-----CTGTG--TGTGTGTGTGTG------T--GTGTGT----GTGT----------GTG--TGCG--T------------G--T----------AAG----TGT------GTGTGTGTG----T------GTG-----------------------------------TGCTGGTGCT---------GT------------GTT---------------------------------------------------------------------------------------------------------------G--TGTTTGCAACTAAATTGTT-AGA--------------------------------------------CA-----------------------------------------------TTTT--------------A-ATT-AATT-------------------------------------------------TCC--------------------------------------------------------------------------------ACTTTAATGTTTACTTA------------------------------GCTAAA--------------------------------------------TGTT----------------TT-----------------------------------------------CCT------------CCCTG-------CCTGCAGGCAATAACAACAACAACAACGGAGA---------CTT----------CGAG-CG---G---ATASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................TGTGC--CA-----CTGTG--TGTGTGTGTGTG------T--GTGTGT----GTGT----------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................35113.001300000000000000000000000000000000000000000000000000000000010120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GTGC--CA-----CTGTG--TGTGTGTGTGTG------T--GTGTGT----GTGT----------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3517.0070000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GTGTGC--CA-----CTGTG--TGTGTGTGTGTG------T--GTGTGT----GTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3512.0020000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TGTGTGTG----T------GTG-----------------------------------TGCTGGTGCT---------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................TG--TGCG--T------------G--T----------AAG----TGT------GTGTGTGTG----T------GTG-----------------------------------TGCTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TG--TGTGTGTGTGTG------T--GTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000
...........................................GTG--TGTGTGTGTGTG------T--GTGTGT----GTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000
....................................................TGTGTGTG------T--GTGTGT----GTGT----------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000
........................................................................TGT----GTGT----------GTG--TGCG--T------------G--T----------AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................GC--CA-----CTGTG--TGTGTGTGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
................................................TGTGTGTGTGTG------T--GTGTGT----GTGT----------GTG--T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000
..................................................TGTGTGTGTG------T--GTGTGT----GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
............................................................................................................................................T------GTGTGTGTG----T------GTG-----------------------------------TGCTGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TG--TGTGTGTGTGTG------T--GTGTGT----GTGT----------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000
............................................TG--TGTGTGTGTGTG------T--GTGTGT----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CA-----CTGTG--TGTGTGTGTGTG------T--GTGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................A-----CTGTG--TGTGTGTGTGTG------T--GTGTGT----GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................G--T------------G--T----------AAG----TGT------GTGTGTGTG----T------G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TG------T--GTGTGT----GTGT----------GTG--TGCG--T------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............................................................................................................................................T------GTGTGTGTG----T------GTG-----------------------------------TGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................CTGTG--TGTGTGTGTGTG------T--GTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................T----------AAG----TGT------GTGTGTGTG----T------GTG-----------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......................................................................GTGT----GTGT----------GTG--TGCG--T------------G--T----------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................TGT------GTGTGTGTG----T------GTG-----------------------------------TGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
................................................TGTGTGTGTGTG------T--GTGTGT----G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................T--GTGTGT----GTGT----------GTG--TGCG--T------------G--T----------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................T--GTGTGT----GTGT----------GTG--TGCG--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TGTG--TGTGTGTGTGTG------T--GTGTGT----GTGT----------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................................................................TGTGT----GTGT----------GTG--TGCG--T------------G--T----------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................TGTGTGTGTG------T--GTGTGT----GTGT----------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.................................................GTGTGTGTGTG------T--GTGTGT----GTGT----------GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
....................................................................................................................................................TGTGTGTG----T------GTG-----------------------------------TGCTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................GTGTGTGTG----T------GTG-----------------------------------TGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................T----------AAG----TGT------GTGTGTGTG----T------GT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................................CTGTG--TGTGTGTGTGTG------T--G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
droSim2
TGCG-TA------------------TGCGCAT--TA-----TTA----GG--TGCGT--------ATGCGTGAGT----GTGTG------------TGT--GTGT------------TT------------------------------------------------GGCTCTATTT------TCATGTTACCTTCGCATA------------------C--ACGCTCCCACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT------------C---------------CC---C-C----------------------------------TACCCCACCTCCTCTG--------------------------------G------------------------------CTGGTC--------------------------------------------------------------------------------------------------------------------------------------CCCCTCCC---------------------------------------------------------CT--------------------------------------------------------------------CG------ATCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................T--------ATGCGTGAGT----GTGTG------------TG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.33100000000001000000
..................................................................TGCGTGAGT----GTGTG------------TGT--G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
droSec2
ATGTGTG------------------TGTGTGT--GT-----GCG----T----------------------GTGT----GTGCG------------TAT--G--T--------------------------------------------------------------GTTTTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTTT--TTTCGTTAGCTAAATTGTTTATTTTATTAGCAATTTGGAGAATTTATGTGCGCGACA------TGTGAAATTTGC-----------------GCTTCACCCTTT-GCCC----TCTGTTC---------------TCT-T------------------------------------------------TGCCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCCCCTGC-CC----------------------TCT-----GTACTTGG------------CCACGCCCC-------CAGGC------CGCAGAAGCTAAAG------------------------------------GCGGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......G------------------TGTGTGT--GT-----GCG----T----------------------GTGT----G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100
droYak3
CGTGT-G------------------TGT-TGT--GT-----GTG----C----C-----------CCGTCCGTGTATCCGTAT--CCG----------T--G--A-----------------GATACGCGTGAG----TGT------------CCG----C------GTC-----------------------------------TGCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCGCACATCATCATCGCCGTACACCATCCGCCGTC-------CAACATCCA-CCAT-----------------------------CATCATCATCATCATC-GCCATCGCCATCGACATCATCGTCGTCT--------------------TCGTCGTCGTCGTCGTCATCGTCATCAGAGATCAGAGATCTGCGGCGGA----------GTGTGTGCCAGAAAAGAGGA---A----TCGTGAATCAGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGAAAAGAGGA---A----TCGT........2011.00100000010000
droEre2
CCACT-G--TGCGTC------------C------G-------T--GTGTG--TGTGTGTGT--GTGCGTCCGTGT----------GTG----------T--G--T------------GTGT----------GTG--TGT----------GTGTGTGTGTGT------GTCACCATCC------GGATGCTGCTTGTGTGGG------------------T--GTGC------------GT-------------------------------------------------------------------------------------------------------------------------------------T-ACT------------------------------------------------------------------------------CTCAACCGTCAGTCCCGTC--------------G-ATC-TGTC------------CGTCGTCCC-TCGTCCCT--------------CATCCATCG-------TCCTTC-----------------------------------------------------------------------------------------------------------------GACCTACGCTCCTCGTCC------TTGCGCCCCTCCACTCCGCCAACAAAGGACG-------------------------------------------------------------------------------------------TCCGCACGG-------------------AGAA------------AACGGCAACAGCTGCTC---GACAATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................TGT----------GTG----------T--G--T------------GTGT----------GTG--TGT----------G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000010

Generated: 05/17/2015 at 10:25 PM