ID:

dmo_494

 Coordinate:

scaffold_6328:1520076-1520226 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.8 -17.8 -17.5

Flybase annnotation

exon [dmoj_GLEANR_16917:4]; CDS [Dmoj\GI16188-cds]; intron [Dmoj\GI16188-in]

No Repeatable elements found

mature
  1. scaffold_5592:1899-1924 -
  2. dmo_494  scaffold_6328:1520137-1520162 -
  3. scaffold_6473:13795666-13795691 -
  4. scaffold_6482:2195567-2195592 -
  5. scaffold_6482:2733149-2733174 -
  6. scaffold_6498:2001254-2001279 -
  7. scaffold_6498:3332343-3332368 -
  8. scaffold_6500:30526520-30526545 -
  9. scaffold_6500:30706430-30706455 -
  10. scaffold_6500:31459834-31459859 -
  11. scaffold_6500:32269847-32269872 -
  12. scaffold_6540:563721-563746 -
  13. scaffold_6540:837675-837700 -
  14. scaffold_6540:929763-929788 -
  15. scaffold_6540:1413910-1413935 -
  16. scaffold_6541:892397-892422 -
  17. scaffold_6541:1085718-1085743 -
  18. scaffold_6541:1787756-1787781 -
  19. scaffold_6541:2308834-2308859 -
  20. scaffold_6680:24423672-24423697 -
  21. scaffold_119:337-362 +
  22. scaffold_1731:440-465 +
  23. scaffold_3973:4452-4477 +
  24. scaffold_4108:387-412 +
  25. scaffold_4743:308-333 +
  26. scaffold_6262:17368-17393 +
  27. scaffold_6482:308857-308882 +
  28. scaffold_6482:528699-528724 +
  29. scaffold_6482:2418493-2418518 +
  30. scaffold_6482:2536519-2536544 +
  31. scaffold_6498:2562953-2562978 +
  32. scaffold_6500:31443270-31443295 +
  33. scaffold_6500:31654765-31654790 +
  34. scaffold_6500:32029772-32029797 +
  35. scaffold_6540:210683-210708 +
  36. scaffold_6540:1185921-1185946 +
  37. scaffold_6541:1048-1073 +
  38. scaffold_6541:1516060-1516085 +
  39. scaffold_6541:1868270-1868295 +
  40. scaffold_6541:2015430-2015455 +
  41. scaffold_3801:2744-2769 +
  42. scaffold_6382:4384-4409 +
  43. scaffold_6500:29234559-29234584 +
  44. scaffold_6500:30674258-30674283 +
star
  1. scaffold_119:396-420 +
  2. scaffold_1731:498-522 +
  3. scaffold_3801:2803-2827 +
  4. dmo_494  scaffold_6328:1520079-1520103 -
  5. scaffold_6473:3833186-3833210 +
  6. scaffold_6473:13795608-13795632 -
  7. scaffold_6482:308917-308941 +
  8. scaffold_6482:528757-528781 +
  9. scaffold_6482:2045079-2045103 -
  10. scaffold_6482:2426797-2426821 -
  11. scaffold_6498:2001196-2001220 -
  12. scaffold_6498:2563012-2563036 +
  13. scaffold_6500:30126014-30126038 +
  14. scaffold_6500:31443329-31443353 +
  15. scaffold_6500:31459776-31459800 -
  16. scaffold_6500:32029831-32029855 +
  17. scaffold_6500:32269789-32269813 -
  18. scaffold_6540:1413852-1413876 -
  19. scaffold_6541:1868329-1868353 +
  20. scaffold_6541:2015489-2015513 +
  21. scaffold_6541:1505225-1505249 -
  22. scaffold_5592:1841-1865 -
  23. scaffold_6482:2733092-2733116 -
  24. scaffold_6498:3332286-3332310 -
  25. scaffold_6500:30706372-30706396 -
  26. scaffold_6540:837618-837642 -
  27. scaffold_6541:1085660-1085684 -
  28. scaffold_6541:2308777-2308801 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGCGGCCACGGTCAAGGCGAAGGCGTTCTTCAAGAGCTGCATGGATCTGCGTGAGTAGACATATGTATATATGTGCATGTATATGCCTTATAAGTTATAACCAGAGCTTGCAAATGAGAGTTGAGCGTTTTTTCGTTTATTCTCTTTCTCGCATCATACCCAAAAAAAAATTGTGTAGACACGTCTCTCTCTGAGCGTCACTCTCTTTTTTCTTTAGCATCTGTTTCGCTCAGACGCAATGCGATCACTCA
******************************************************************************************************************.((((((.(((((......)))))))))))..(((((((..................)))).))).(((.(((.....))))))***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V056
head
..................................................................................................................TGAGAGTTGAGCGTTTTTTCGTTTAT............................................................................................................... 26 0 20 1.45 29 29 0 0 0 0
.................................................................................................................................................................................................................TTCTTTAGCATCTGTTTCGCTCAGA................. 25 0 20 1.45 29 0 29 0 0 0
...GGCCACGGTCAAGGCGAAGGCGTTCTTCA........................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0
.............................................................................................................................................................................TGTAGACACGTCTCTCTCTGAGCGT..................................................... 25 0 20 0.40 8 3 4 1 0 0
..................................................................................................................TGAGAGTTGAGCGTTTTTTCGTTTA................................................................................................................ 25 0 20 0.20 4 0 4 0 0 0
...............................................................................................................................................................................TAGACACGTCTCTCTCTGAGCG...................................................... 22 0 20 0.15 3 1 0 2 0 0
....................................................................................................................................................TCGCATCATACCCAAAAAAAAATTGTG............................................................................ 27 0 20 0.15 3 3 0 0 0 0
..................................................................................................................TGAGAGTTGAGCGTTTTTTCGTTTATT.............................................................................................................. 27 0 20 0.15 3 3 0 0 0 0
..................................................................................................................TGAGAGTTGAGCGTTTTTTCGTTTAC............................................................................................................... 26 1 20 0.15 3 0 3 0 0 0
..........................................................................................................................................................................TTGTGTAGACACGTCTCTCTCTGAGCGT..................................................... 28 0 20 0.10 2 2 0 0 0 0
.........................................................................................................................................................................ATTGTGTAGACACGTCTCTCTCTGA......................................................... 25 0 20 0.10 2 2 0 0 0 0
...........................................................................................................................................................................TGTGTAGACACGTCTCTCTCTGAGC....................................................... 25 0 20 0.10 2 1 0 0 1 0
.................................................................................................................................................................................................................TTCTTTAGCATCTGTTTCGCTC.................... 22 0 20 0.10 2 2 0 0 0 0
............................................................................................................................................................TACCCAAAAAAAAATTGTGTAGACACGTC.................................................................. 29 0 20 0.10 2 0 2 0 0 0
...............................................................................................................................................................................TAGACACGTCTCTCTCTGAGCGTC.................................................... 24 0 20 0.10 2 2 0 0 0 0
...............................................................................................................................................................................TAGACACGTCTCTCTCTGAGC....................................................... 21 0 20 0.10 2 0 2 0 0 0
..................................................................................................AACCAGAGCTTGCAAATGAG..................................................................................................................................... 20 0 12 0.08 1 0 0 0 0 1
.............................................................................................................................................................................................................TTTTTTCTTTAGCATCTGTTTCGC...................... 24 0 18 0.06 1 0 1 0 0 0
.................................................................................................................................................................................................................TTCTTTAGCATCTGTTTCTCTCAGACG............... 27 1 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................TGTGTAGACACGTCTCTCCCTGAG........................................................ 24 1 20 0.05 1 0 0 0 1 0
...............................................................................................................................................................................TAGACACGTCTCTCTCTGAGCGTCAC.................................................. 26 0 20 0.05 1 1 0 0 0 0
............................................................................................................................................TCTCTTTCTCGCATCATACCC.......................................................................................... 21 0 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................................................................CTTTAGCATCTGTTTCGCTCAGA................. 23 0 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................................................................TCTTTAGCATCTGTTTCGCTCA................... 22 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................TTGTGTAGACACGTCTCTCTCTGAGC....................................................... 26 0 20 0.05 1 0 0 0 1 0
...............................................................................................................................................................................TAGACACGTCTCTCTCTGAGCGT..................................................... 23 0 20 0.05 1 1 0 0 0 0
..................................................................................................................TGAGAGTTGAGCGTTTTTTCGTAAA................................................................................................................ 25 2 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................................TTCTTTAGCATCTGTTTCGCTCAG.................. 24 0 20 0.05 1 0 0 1 0 0
..............................................................................................................................................................CCCAAAAAAAAATTGTGTAGACACG.................................................................... 25 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................GTAGACACGTCTCTCTCTGAGCGT..................................................... 24 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................................TGTAGACACGTCTCTCTCTGAGCG...................................................... 24 0 20 0.05 1 1 0 0 0 0
..................................................................................................................TGAGAGTTGAGCGTTTTTTCGTTTATA.............................................................................................................. 27 1 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................GACACGTCTCTCTCTGAGCGTCAC.................................................. 24 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................ATCATACCCAAAAAAAAATTGTGTAGA........................................................................ 27 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................TTTCTCCCATCATACCCAAAAAAAAA................................................................................. 26 1 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................TAGACACGTCTCTCTCTGAGCGTCACTC................................................ 28 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................CTCTCTCTGAGCGTCACTCTCTT............................................ 23 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................................................................TGCGCTCAGACGCAATGCGATCACTCA 27 1 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................................TTCTTTAGCATCTGTTTCCCTCAGAC................ 26 1 20 0.05 1 1 0 0 0 0
.........................................................................................................................TGAGCGTTTTTTCGTTTATTCTCTT......................................................................................................... 25 0 20 0.05 1 0 0 1 0 0
..........................................................................................................................................................................TTGTGTAGACACGTCTCTCTCTGATCG...................................................... 27 1 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................................................................CTTTAGCATCTGTTTCGC...................... 18 0 20 0.05 1 0 1 0 0 0
..........................................................................................................................................................................TTGTGTAGACACGTCTCTCTCTGAGCG...................................................... 27 0 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................................................................CTTTAGCATCTGTTTCGCTCAGACG............... 25 0 20 0.05 1 1 0 0 0 0
...........................................................................................................TTGCAAATGAGAGTTGAGCGTTTTT....................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
..........................................................................................................................................................................TTCTGTAGACACGTCTCTCTCTGAGCG...................................................... 27 1 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................................TTCTTTAGCATCTGTTTCG....................... 19 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................TAGACACGTCTCTCTCTGAGCGTCACCCC............................................... 29 2 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................CATACCCAAAAAAAAATTGTGTAGACACG.................................................................... 29 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................................TGTAGCATCTGTTTCGCTCAGA................. 22 1 20 0.05 1 0 1 0 0 0
............................................................................................................................................TCTCTTTCTCGCATCATACCCA......................................................................................... 22 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................TGTCTCTCTGAGCGTCACTCTCTTC........................................... 25 2 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................ATACCCAAAAAAAAATTGTGTAGACACG.................................................................... 28 0 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

ACGCCGGTGCCAGTTCCGCTTCCGCAAGAAGTTCTCGACGTACCTAGACGCACTCATCTGTATACATATATACACGTACATATACGGAATATTCAATATTGGTCTCGAACGTTTACTCTCAACTCGCAAAAAAGCAAATAAGAGAAAGAGCGTAGTATGGGTTTTTTTTTAACACATCTGTGCAGAGAGAGACTCGCAGTGAGAGAAAAAAGAAATCGTAGACAAAGCGAGTCTGCGTTACGCTAGTGAGT
*****************************************************.((((((.(((((......)))))))))))..(((((((..................)))).))).(((.(((.....))))))****************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V110
male body		 V056
head
....................................................................................................GGTCTCGAACGTTTACTCTCAACT............................................................................................................................... 24 0 20 1.40 28 23 4 1 0 0
..................................................................................................TTGGTCTCGAACGTTTACTCTCAACT............................................................................................................................... 26 0 12 1.33 16 9 7 0 0 0
.................................................................................................................................................................................................TCGCAGTGAGAGAAAAAAGAAATCGT................................ 26 0 20 0.50 10 8 0 0 2 0
..................................................................................................................................................................................................CGCAGTGAGAGAAAAAAGAAATCGT................................ 25 0 20 0.50 10 6 2 1 1 0
...............................................................................................AAATTGGTCTCGAACGTTTACTCTCAAC................................................................................................................................ 28 1 4 0.25 1 1 0 0 0 0
.........................................................................................................CGAACGTTTACTCTCAACTCGCAAAA........................................................................................................................ 26 0 20 0.25 5 0 5 0 0 0
...................................................................................................TGGTCTCGAACGTTTACTCTCAACT............................................................................................................................... 25 0 20 0.25 5 4 1 0 0 0
............................................................................................................ACGTTTACTCTCAACTCGCAAAA........................................................................................................................ 23 0 20 0.25 5 4 1 0 0 0
...................................................................................................................................................................................................GCAGTGAGAGAAAAAAGAAATCGT................................ 24 0 20 0.20 4 4 0 0 0 0
.............................................................................................................................................GAGAAAGAGCGTAGTATGGGTTTT...................................................................................... 24 0 20 0.15 3 3 0 0 0 0
.............................................................................................................CGTTTACTCTCAACTCGCAAAA........................................................................................................................ 22 0 20 0.10 2 2 0 0 0 0
....................................................................................................GGTCTCGAACGTTTACTCTCAAC................................................................................................................................ 23 0 20 0.10 2 2 0 0 0 0
..........................................................................................................GAACGTTTACTCTCAACTCGCAAAA........................................................................................................................ 25 0 20 0.10 2 2 0 0 0 0
...........................................................................................................................................................................................................................AGACAAAGCGAGTCTGCGTT............ 20 0 20 0.10 2 0 1 1 0 0
..................................................................................................TTGGTCTCGAACGTTTACTCTCTACT............................................................................................................................... 26 1 12 0.08 1 0 1 0 0 0
..................................................................................................TTGGTCTCGAACGTTTACTCTCAAGT............................................................................................................................... 26 1 12 0.08 1 0 1 0 0 0
..................................................................................................TGGGTCTCGAACGTTTACTCTCAACT............................................................................................................................... 26 1 16 0.06 1 0 1 0 0 0
........................................................................................................................................................................................GGGAGAGACTCGCAGTGAGAG.............................................. 21 1 20 0.05 1 0 0 0 1 0
......................................................................................................................................................................................................GTGAGAGAAAAAAGAAATCGT................................ 21 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................GCAAAAAAGCAAATAAGAGAAAGAGCGT.................................................................................................. 28 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................CGCAGTGAGAGAAAAAAGATATCGT................................ 25 1 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................................................GACTCGCAGTGAGAGAAAAAAGAAAGCGT................................ 29 1 20 0.05 1 0 1 0 0 0
................................................................................................................................................................................TCTGTGCAGAGAGAGACTCGCAGTT.................................................. 25 1 20 0.05 1 1 0 0 0 0
..........................................................................................................................................TAAGAGAAAGAGCGTAGTATGGG.......................................................................................... 23 0 20 0.05 1 1 0 0 0 0
.................................................................................................................TACTCTCAACTCGCAAAAAAGCAAAT................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0
...........................................................................................................................................AAGAGAAAGAGCGTAGTATGGGTT........................................................................................ 24 0 20 0.05 1 1 0 0 0 0
....................................................................................................GGTCTCGAACGTTTACTCTCA.................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................GCAAAAAAGCAAATAAGAGAAAGAGCGTA................................................................................................. 29 0 20 0.05 1 1 0 0 0 0
...........................................................................................................AACGTTTACTCTCAACTCGCAAAA........................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................AGAGACTCGGAGTGAGAGAAA........................................... 21 1 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................................CTCGCAGTGAGAGAAAAAAGAAATCGT................................ 27 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................TCGCAGTGAGAGAAAAAAGAAATAGT................................ 26 1 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................................................GCAGTGAGAGAAAAAAGAAATCG................................. 23 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................................................AGACAAAGCGAGTCTGCG.............. 18 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................AGAGACTCGCAGTGAGAG.............................................. 18 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................GCAGAGAGAGACTCGCAGTGA................................................. 21 0 20 0.05 1 0 0 1 0 0
..................................................................................................................................................................................................CGCATTGAGAGAAAAAAGAAATCGT................................ 25 1 20 0.05 1 0 0 1 0 0
...................................................................................................TGGTCTCGAACGTTTACTCTCAAGT............................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0
.........................................................................................................................................ATAAGAGAAAGAGCGTAGTATGGGTT........................................................................................ 26 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................CGCAGTGAGAGAAAAAAGAAATAGT................................ 25 1 20 0.05 1 0 1 0 0 0
................................................................................................................................................AAAGAGCGTAGTATGGGTTT....................................................................................... 20 0 20 0.05 1 0 0 0 0 1
...................................................................................................................................................................................................GCAGTGAGAGAAAAAAGAAATCGTAGA............................. 27 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................................CTCGCAGTGAGAGAAAAAAGAAATCG................................. 26 0 20 0.05 1 1 0 0 0 0
....................................................................................................GGTCTCGAACGTTTACTCTCAACC............................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0
.............................................................................................................................................GAGAAAGAGCGTAGTATGGGTTT....................................................................................... 23 0 20 0.05 1 1 0 0 0 0
..........................................................................................................GAACGTTTACTCTCAACTCGCAAA......................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
......................................................................................................TCTCGAACGTTTACTCTCAACTCA............................................................................................................................. 24 1 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................TCGCAGTGAGAGAAAAAAGAAATCG................................. 25 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................CGCAGTGAGAGAAAAAAGAAATCTT................................ 25 1 20 0.05 1 0 1 0 0 0
............................................................................................................................................AGAGAAAGAGCGTAGTATGGGTTTT...................................................................................... 25 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6328:1520026-1520276 - dmo_494 TGCGGCCACGGTCAAGGCGAAGG--------CGTTCTTCAAGAGCTGCATGGATCT-----GCGT------GAGTAGACA----------TA----------TGTATATATGTGCA---------------TGTATATGCCTTAT-AAGTTATAACCAGAGCTTGCAAATGAGAGTTGAGCGT------------------TTTT-TCGTTTATTCTCTTT---------------CTCGCATCATACCCAAAAAAAAATTGTGTAGACACG-TCTCTCTCTGAGCGTCACTCTCTTTTTTCTTTAGCATCTGTTTCG-CTCAGACGCAATGCGATCACTCA--------
droVir3 scaffold_13042:1866893-1866999 - GTAGTTA----------------------------------------T-----------------ATAT------ATATAT----------GTATGTATATAT-----------------------------------ATC-----------GTATCATATATAGCATGTGTTATATGAACAT------------------TTTC-TTTTTTTTTTT------------------------AC-------------------------------------------------------------------------CATGCAGAGAACAATACTTTTTAGAC--------
droGri2 scaffold_15110:605336-605534 - ATGTATG----------------------------------------T-----------------AAGT------AGGTAT----------ATGTGTATATGT----------GTG------TGCAATACATAC---------AT-ATACAACAACGAA-----ACGACTACGAAATGAACATTTTGCATCTTTCGATCGTCGTTTATATTGGCGATGCCTCTGCCAGCGTCACTGCTGCACAAAAAACAC-ACA-TACACACATTAATATG-AGTTACTTTGAGCATCATTTTTTGCATTTT------------------------------------GTA--------
droWil2 scf2_1100000004824:63659-63857 + GCACACA----------------------------------------T-----------------ATATATC--TATATA----------AA----------TATATATATATATAGGTACA---------TAT------------------ATATCATAGTTCGCAAATGACAGTTGATCGT------------------TGTA-TCTTATATGCTCTGC---------------TTCGTATCATAACCGAAAA-A-ATTGTCCAGAAACGATCTCTTTCTGAGCGGCTCTCTTTGTTTTGTTTTGAATTGGT-TTTTGGCAAGCGCTTTGCATTAACTCA--------
dp5 4_group2:395796-395871 + AGATGCA----------------------------------------G-----------------GGAT------ACACGAGTGTGCATGT----------GCGGGTGTACATGCA---------------TGTGTGTGTCTCAT-A------------------------------------------------------------------------------------------------------TAAAACAACATTTT---------------------------------------------------------------------------GTAA--------
droPer2 scaffold_64:119697-119868 - TATCT-----------------------------------------------------------------------------------------------------------------------------------------------ATTGAAACCATAGCTCGCAAACGACGGTCAACACT------------------TTTT-CCCATTGCTGTCTCG---------------TCACTGACAAAACCGAAAA-AGACCACGCAGAAACGGTCTCTCACTGAGCAGAACACTTTTTGTCTCTTCGCTTGTGTTATGTGTTTCGGGTTTTCAGTTGAGTCCGACACACG
droAna3 scaffold_3780:2836-3082 - TTTGGCCATTTTCGGGAAGTAGT--------AC---TCGGAGAGTACCTGCTTATTGATTGCC-----------CTAAGA----------TG----------GCTTCCTAAGGGCA---------------C-AATACATGTTATTA-GTTATTATCATAGCTTGCAAATAACTGCCGACCGT------------------TTTT-TTTCTTGAGCTCTCG---------------TTGCGAGCACAACCGAAAA-AGTTCATACTCTTTCGCTCTCGCTCTGAGCAAGAGACTTTTGCTATCTTTATTTCTGTTTCCTGTTGAGCGT-TTTCGTTGAGCTC--------
droBip1 scf7180000396603:34282-34447 + CTTTTGG---------------------------------------------------------------------------------------------------------------------------------------------CTTCCAACCATAGCTTGCAAATAACTGTTAACCGT------------------TTTT-TTCTTTACGCTCTGT---------------TCGCGAGAACAACCGAAAA-AAAGCATGCCGTTTCGGTTTCTCTCTGAGCAGCAGACTTTGTTTCTTTTTGTTTCGATTTTCTGTTGAAAGCATTACGATGAGCCG--------
droKik1 scf7180000302221:302-479 + TATGCAAATG-----------------------------------------------------------------------------------------------------------------------------T--ATTAGAC-CTGTAAAAACCAGAGCTTGCAAATAACTGTTGACGGG------------------GTTT-T-TCCTGTGCTCTCG---------------TTGCGAGTAAAACCGAAAA-AGATCATACTCTCTCGCTCTCGTTCAGAGCAAGGGAGTTTTGCTGTCTTCATTTCGGTTTTTTGTTGAACGCTTTTCGTTGAGCTC--------
droFic1 scf7180000454071:11191-11392 - TGCACGAAT------------------------------------------------------------------AAACGATTTATAA----------------------CGTTAA---------------AGCTCATATTGTTT-A-ATTTAAACCAGAGCTCGCAAATAACAGTTGACCGT------------------TTTT-CATCTAGTGCTCTCG---------------GTGCGAGCACAACCGAAAA-AGTTCATACTGTCTCGCTCTCGCTCTGAGCAAGAGCCCCTTGCTGTCATCCTTTGTGTTTTCTGTTGAGCACTTTTTGTTGAGCTC--------
droEle1 scf7180000490141:711297-711355 + CCAGGCCACCATCAAGGCCAAAA--------CCTTCTTCAAAAGCTGCATGGATAT-----ACGT------GAG----------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA--------
droRho1 scf7180000776583:18358-18533 - ATAGTTG----------------------------------------T-----------------GCAA---------------------------------------------------------------CTTTATGC-------AGTCAAA----ACGCTATTAACTAACTGTTGACCGT------------------TTTT-CTTCTTGCGCTCTCG---------------TTGCAAGCACAACCGAAAA-AGTTCATACTCTCTCGCTCTCGCTCTGAGCAAGAGACTCTTTCTGTATTCATTTATGTTTTCTGTTGAGCGCTTTTCGTTGAGAAA--------
droBia1 scf7180000301308:1784-1971 - TATAAA--------------------------------------------------------------------------------------------------------TGTGAA---------------TGTGTATATTATTT-CGCTTATTATCAGAGCTTGTAAATAACTGTCGACCGT------------------TTTTTTTTCTTGTGCTCTCG---------------TTGCGAGCACAACCTAAAA-AGTTCATACTCTCTCGCTCTCGCTCTGAACAAGAGACTTTTGCTGCCTTCAATTCTGTTTTCTGATGAGCGCTTTTCGTTGAGCCC--------
droTak1 scf7180000415765:269913-270102 - AAACCAA----------------------------------------T-----------------ATAC------ATATGATATCTTATAT----------GTT------------------------------------------A-GTTTTAACCAAAGCATGCAAATAACTGTTAACCGT------------------TTTT-TTCCTTACGCTCTAC---------------TCCCGAGAACAACCGAAAA-ATAGCATGCCC-CTCGTTCTCTCTCTGCGCAGCACACTTCGTTTCCTTTCGTTTTGGTTTTCGGTTGAGCCTTTTACGTTGAGCTG--------
droEug1 scf7180000409033:321920-321975 + CAAGGCCACCATCAAGGCCAAAA--------CCTTCTTCAAAAGCTGCATGGATAT-----ACGT------AAG----------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3R:7152610-7152701 - TGCAGCGACAGCCACTGCAATTCTCTATGTACGTGCTCAGAGATA--TATGTGTC-------------------CATATA----------TA----------TGTACATATATATATGTATAT-----A----T--AT--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATA--------
droSim2 2l:19518072-19518149 + ACGGTAGAC---------GAAAA--------CGTGTAACAGAAAGTATATCCATAT-----GTAT------GT--ATATA----------CA----------TATGTATATGTATA------T-----ACATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATG--------
droSec2 scaffold_4:770141-770196 - CAAGGCCACCATTAAGGCCAAAA--------CCTTCTTCAAGAGCTGCATGGATAT-----TCGT------AAG----------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:2005087-2005224 + CAAGGCCACCATAAAGGCGAAAA--------CCTTCTTCAAGAGCTGCATGGATAT-----TCGT------AAG----------------------T--------TGAACTCTTCATGTTTAG-----C----T--AT--TTTAT---------------------AATTAAT-----------------------------------------TTTAAAT---------------TTGCTATCACAAGCTAACG-CTTTTTCATTCTCTCAATCGC----------------------------------------------------------------A--------
droEre2 scaffold_4690:14974312-14974370 + CAAGGCCACGATAAAGGCAAAAA--------CCTTCTTCAAGAGCTGCATGGATAT-----ACGT------AAG----------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA--------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TGCGGCCACGGTCAAGGCGAAGG--------CGTTCTTCAAGAGCTGCATGGATCT-----GCGT------GAGTAGACA----------TA----------TGTATATATGTGCA---------------TGTATATGCCTTAT-AAGTTATAACCAGAGCTTGCAAATGAGAGTTGAGCGT------------------TTTT-TCGTTTATTCTCTTT---------------CTCGCATCATACCCAAAAAAAAATTGTGTAGACACG-TCTCTCTCTGAGCGTCACTCTCTTTTTTCTTTAGCATCTGTTTCG-CTCAGACGCAATGCGATCACTCA--------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................TGAGAGTTGAGCGT------------------TTTT-TCGTTTAT........................................................................................................................................26201.45292900000
...........................................................................................................................................................................................................................................................................................................TTCTTTAGCATCTGTTTCG-CTCAGA.........................25201.45290000290
...GGCCACGGTCAAGGCGAAGG--------CGTTCTTCA......................................................................................................................................................................................................................................................................................................................2911.001000001
......................................................................................................................................................................................................................................................................TGTAGACACG-TCTCTCTCTGAGCGT..............................................................25200.408300041
.........................................................................................................................................................................TGAGAGTTGAGCGT------------------TTTT-TCGTTTA.........................................................................................................................................25200.204000040
........................................................................................................................................................................................................................................................................TAGACACG-TCTCTCTCTGAGCG...............................................................22200.153100002
.............................................................................................................................................................................................................................................TCGCATCATACCCAAAAAAAAATTGTG......................................................................................27200.153300000
.........................................................................................................................................................................TGAGAGTTGAGCGT------------------TTTT-TCGTTTATT.......................................................................................................................................27200.153300000
.........................................................................................................................................................................TGAGAGTTGAGCGT------------------TTTT-TCGTTTAC........................................................................................................................................26200.153000030
...................................................................................................................................................................................................................................................................TTGTGTAGACACG-TCTCTCTCTGAGCGT..............................................................28200.102200000
..................................................................................................................................................................................................................................................................ATTGTGTAGACACG-TCTCTCTCTGA..................................................................25200.102200000
....................................................................................................................................................................................................................................................................TGTGTAGACACG-TCTCTCTCTGAGC................................................................25200.102110000
...........................................................................................................................................................................................................................................................................................................TTCTTTAGCATCTGTTTCG-CTC............................22200.102200000
.....................................................................................................................................................................................................................................................TACCCAAAAAAAAATTGTGTAGACACG-TC...........................................................................29200.102000020
........................................................................................................................................................................................................................................................................TAGACACG-TCTCTCTCTGAGCGTC.............................................................24200.102200000
........................................................................................................................................................................................................................................................................TAGACACG-TCTCTCTCTGAGC................................................................21200.102000020
.........................................................................................................................................................AACCAGAGCTTGCAAATGAG.................................................................................................................................................................................20120.081000100
.......................................................................................................................................................................................................................................................................................................TTTTTTCTTTAGCATCTGTTTCG-C..............................24180.061000010
........................................................................................................................................................................................................................................................................TAGACACG-TCTCTCTCTGAGCGTCAC...........................................................26200.051100000
......................................................................................................................................................................................................................TCTCTTT---------------CTCGCATCATACCC....................................................................................................21200.051000010
.............................................................................................................................................................................................................................................................................................................CTTTAGCATCTGTTTCG-CTCAGA.........................23200.051000010
............................................................................................................................................................................................................................................................................................................TCTTTAGCATCTGTTTCG-CTCA...........................22200.051100000
...................................................................................................................................................................................................................................................................TTGTGTAGACACG-TCTCTCTCTGAGC................................................................26200.051010000
........................................................................................................................................................................................................................................................................TAGACACG-TCTCTCTCTGAGCGT..............................................................23200.051100000
...........................................................................................................................................................................................................................................................................................................TTCTTTAGCATCTGTTTCG-CTCAG..........................24200.051000001
.......................................................................................................................................................................................................................................................CCCAAAAAAAAATTGTGTAGACACG-.............................................................................25200.051100000
.......................................................................................................................................................................................................................................................................GTAGACACG-TCTCTCTCTGAGCGT..............................................................24200.051100000
......................................................................................................................................................................................................................................................................TGTAGACACG-TCTCTCTCTGAGCG...............................................................24200.051100000
.........................................................................................................................................................................TGAGAGTTGAGCGT------------------TTTT-TCGTTTATA.......................................................................................................................................27200.051100000
..........................................................................................................................................................................................................................................................................GACACG-TCTCTCTCTGAGCGTCAC...........................................................24200.051100000
.................................................................................................................................................................................................................................................ATCATACCCAAAAAAAAATTGTGTAGA..................................................................................27200.051100000
........................................................................................................................................................................................................................................................................TAGACACG-TCTCTCTCTGAGCGTCACTC.........................................................28200.051100000
..................................................................................................................................................................................................................................................................................CTCTCTCTGAGCGTCACTCTCTT.....................................................23200.051100000
................................................................................................................................................................................TGAGCGT------------------TTTT-TCGTTTATTCTCTT..................................................................................................................................25200.051000001
.............................................................................................................................................................................................................................................................................................................CTTTAGCATCTGTTTCG-C..............................18200.051000010
...................................................................................................................................................................................................................................................................TTGTGTAGACACG-TCTCTCTCTGAGCG...............................................................27200.051000010
.............................................................................................................................................................................................................................................................................................................CTTTAGCATCTGTTTCG-CTCAGACG.......................25200.051100000
..................................................................................................................................................................TTGCAAATGAGAGTTGAGCGT------------------TTTT-................................................................................................................................................25200.051000010
...........................................................................................................................................................................................................................................................................................................TTCTTTAGCATCTGTTTCG-...............................19200.051100000
...................................................................................................................................................................................................................................................CATACCCAAAAAAAAATTGTGTAGACACG-.............................................................................29200.051100000
......................................................................................................................................................................................................................TCTCTTT---------------CTCGCATCATACCCA...................................................................................................22200.051100000
....................................................................................................................................................................................................................................................ATACCCAAAAAAAAATTGTGTAGACACG-.............................................................................28200.051000010
droVir3
GTAGTTA----------------------------------------T-----------------ATAT------ATATAT----------GTATGTATATAT-----------------------------------ATC-----------GTATCATATATAGCATGTGTTATATGAACAT------------------TTTC-TTTTTTTTTTT------------------------AC-------------------------------------------------------------------------CATGCAGAGAACAATACTTTTTAGAC--------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
ATGTATG----------------------------------------T-----------------AAGT------AGGTAT----------ATGTGTATATGT----------GTG------TGCAATACATAC---------AT-ATACAACAACGAA-----ACGACTACGAAATGAACATTTTGCATCTTTCGATCGTCGTTTATATTGGCGATGCCTCTGCCAGCGTCACTGCTGCACAAAAAACAC-ACA-TACACACATTAATATG-AGTTACTTTGAGCATCATTTTTTGCATTTT------------------------------------GTA--------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GCACACA----------------------------------------T-----------------ATATATC--TATATA----------AA----------TATATATATATATAGGTACA---------TAT------------------ATATCATAGTTCGCAAATGACAGTTGATCGT------------------TGTA-TCTTATATGCTCTGC---------------TTCGTATCATAACCGAAAA-A-ATTGTCCAGAAACGATCTCTTTCTGAGCGGCTCTCTTTGTTTTGTTTTGAATTGGT-TTTTGGCAAGCGCTTTGCATTAACTCA--------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................TATCATAGTTCGCAAATGACAGTTGA...........................................................................................................................................................................2620.50101000
.........................................................................................................................................................TATCATAGTTCGCAAATGACAGTTG............................................................................................................................................................................2520.50100010
..................................................................................................................................................................................................................................................TCATAACCGAAAA-A-ATTGTCCAGAA.................................................................................2520.50101000
.............................................................................................................................................................ATAGTTCGCAAATGACAGTTGATCG........................................................................................................................................................................2590.22201010
.................................................................................................................................................................................................................................................................................................TCTCTTTGTTTTGTTTTGAATTGGT-...................................25160.13200020
...........................................................................................................................................................................................................................................................................................AGCGGCTCTCTTTGTTTTGTTTTG...........................................24170.12202000
.......................................................................................................................................................................................................................................................................................TCTGAGCGGCTCTCTTTGTTTTGTT..............................................25170.12201010
..............................................................................................................................................................TAGTTCGCAAATGACAGTTGATCGT------------------T....................................................................................................................................................2690.11101000
.................................................................................................................................................................TTCGCAAATGACAGTTGATCG........................................................................................................................................................................2190.11100010
.............................................................................................................................................................ATAGTTCGCAAATGACAGTTGATCGT------------------T....................................................................................................................................................2790.11100010
..............................................................................................................................................................TAGTTCGCAAATGACAGTTGATCGT------------------.....................................................................................................................................................2590.11101000
............................................................................................................................................................CATAGTTCGCAAATGACAGT..............................................................................................................................................................................20120.08101000
.................................................................................................................................................................................................................................................................................................TCTCTTTGTTTTGTTTTGAATTGGT-TT.................................27160.06100010
.................................................................................................................................................................................................................................................................................................TCTCTTTGTTTTGTTTTGAATTGGT-T..................................26160.06100010
....................................................................................................................................................................................................................................................................................................CTTTGTTTTGTTTTGAATTGGT-TTTT...............................26170.06101000
.....................................................................................................................................................................................................................................................................................................TTTGTTTTGTTTTGAATTGGT-TTT................................24170.06101000
..................................................................................................................................................................................................................................................................................................CTCTTTGTTTTGTTTTGAATTGGT-T..................................25170.06100010
.....................................................................................................................................................................................................................................................................................................TTTGTTTTGTTTTGAATTGGT-...................................21180.06100010
dp5
AGATGCA----------------------------------------G-----------------GGAT------ACACGAGTGTGCATGT----------GCGGGTGTACATGCA---------------TGTGTGTGTCTCAT-A------------------------------------------------------------------------------------------------------TAAAACAACATTTT---------------------------------------------------------------------------GTAA--------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TATCT-----------------------------------------------------------------------------------------------------------------------------------------------ATTGAAACCATAGCTCGCAAACGACGGTCAACACT------------------TTTT-CCCATTGCTGTCTCG---------------TCACTGACAAAACCGAAAA-AGACCACGCAGAAACGGTCTCTCACTGAGCAGAACACTTTTTGTCTCTTCGCTTGTGTTATGTGTTTCGGGTTTTCAGTTGAGTCCGACACACGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................TCACTGACAAAACCGAAAA-AGACCACGC.....................................................................................282142.0028422784000
......................................................................................................................................................................AAACGACGGTCAACACT------------------TTTT-CCCAT...........................................................................................................................................263114.33343303120001
............................................................................................................................................................................................................................................TCACTGACAAAACCGAAAA-AGACCAC.......................................................................................261074.9074987390002
......................................................................................................................................................................AAACGACGGTCAACACT------------------TTTT-CCCA............................................................................................................................................25347.6714301430000
......................................................................................................................................................................AAACGACGGTCAACACT------------------TTTT-CCCATTG.........................................................................................................................................28324.007211610000
............................................................................................................................................................................................................................................TCACTGACAAAACCGAAAA-AGACCA........................................................................................251019.7019701970000
............................................................................................................................................................................................................................................TCACTGACAAAACCGAAAA-AGACCACGCA....................................................................................29213.50270270000
......................................................................................................................................................................AAACGACGGTCAACACT------------------TTTT-CCCATTGC........................................................................................................................................29311.00332310000
.............................................................................................................................................................................................................................................CACTGACAAAACCGAAAA-AGACCACGC.....................................................................................27210.00200200000
.......................................................................................................................................................................AACGACGGTCAACACT------------------TTTT-CCCAT...........................................................................................................................................2539.67290290000
......................................................................................................................................................................AAACGACGGTCAACACT------------------TTTT-CCCATT..........................................................................................................................................2739.67292270000
............................................................................................................................................................................................................................................TCACTGACAAAACCGAAAA-AGACCACG......................................................................................2769.33560560000
.............................................................................................................................................................................................................................................CACTGACAAAACCGAAAA-AGACCAC.......................................................................................25109.00900900000
............................................................................................................................................................................................................................................TCACTGACAAAACCGAAAA-AGACC.........................................................................................24106.90697620000
......................................................................................................................................................................AAACGACGGTCAACACT------------------TTTT-CCC.............................................................................................................................................24115.916514501000
.............................................................................................................................................................................................................................................CACTGACAAAACCGAAAA-AGACCACGCA....................................................................................2823.006060000
...........................................................................................................................................................................................................................CG---------------TCACTGACAAAACCGAAAA-AGACCA........................................................................................2793.00270270000
...........................................................................................................................................................................................................................CG---------------TCACTGACAAAACCGAAAA-AGACCAC.......................................................................................2892.67240240000
.............................................................................................................................................................................................................................................CACTGACAAAACCGAAAA-AGACCA........................................................................................24102.20220220000
.......................................................................................................................................................................AACGACGGTCAACACT------------------TTTT-CCCA............................................................................................................................................2432.006060000
............................................................................................................................................................................................................................................TCACTGACAAAACCGAAAA-AGAC..........................................................................................23101.80180180000
............................................................................................................................................................................................................T-CCCATTGCTGTCTCG---------------TCACTGACA.........................................................................................................2531.675050000
......................................................................................................................................................................AAACGACGGTCAACACT------------------TTTT-CC..............................................................................................................................................23121.33160160000
...........................................................................................................................................................................................................TT-CCCATTGCTGTCTCG---------------TCACTGACAA........................................................................................................2731.334310000
......................................................................................................................................................................AAACGACGGTCAACACT------------------TTTT-C...............................................................................................................................................22131.15150150000
...........................................................................................................................................................................................................................CG---------------TCACTGACAAAACCGAAAA-AGAC..........................................................................................2591.11100100000
..........................................................................................................................................................................................................................................................................GAAACGGTCTCTCACTGAGCAGAACACT........................................................2811.001010000
........................................................................................................................................................................................................................TCTCG---------------TCACTGACAAAACCGAAAA-AGA...........................................................................................27101.00100100000
.......................................................................................................................................................................AACGACGGTCAACACT------------------TTTT-CCCATTG.........................................................................................................................................2731.003030000
............................................................................................................................................................................................................................................................................AACGGTCTCTCACTGAGCAGAACAC.........................................................2511.001100000
..............................................................................................................................................................................................................................................ACTGACAAAACCGAAAA-AGACCACGC.....................................................................................2621.002020000
............................................................................................................................................................................................................................................................................................................................TGTGTTTCGGGTTTTCAGTTGAGT..........2411.001010000
...........................................................................................................................................................................................................................................................................AAACGGTCTCTCACTGAGCAGAACAC.........................................................2611.001100000
.......................................................................................................................................................................AACGACGGTCAACACT------------------TTTT-CCCATTGC........................................................................................................................................2831.003030000
......................................................................................................................................................................AAACGACGGTCAACACT------------------TTTT-CCCAC...........................................................................................................................................2631.003120000
.....................................................................................................................................................................................................................................................................................................................TGTGTTATGTGTTTCGGGTTTTCAAA...............2611.001010000
................................................................................................................................................................................................................................................TGACAAAACCGAAAA-AGACCACGCAG...................................................................................2621.002200000
.............................................................................................................................................................................................................................................CACTGACAAAACCGAAAA-AGACCACG......................................................................................2660.835050000
...........................................................................................................................................................................................................................CG---------------TCACTGACAAAACCGAAAA-AGA...........................................................................................24100.808080000
.......................................................................................................................................................................AACGACGGTCAACACT------------------TTTT-CCC.............................................................................................................................................23110.738080000
....................................................................................................................................................................................................................................................................................................CTTTTTGTCTCTTCGCTTGTGT....................................22170.71120120000
............................................................................................................................................................................................................................G---------------TCACTGACAAAACCGAAAA-AGACCAC.......................................................................................27100.707070000
.............................................................................................................................................................................................................................................CACTGACAAAACCGAAAA-AGACC.........................................................................................23100.707070000
.....................................................................................................................................................................CAAACGACGGTCAACACT------------------TTTT-CCCAT...........................................................................................................................................2730.672110000
.......................................................................................................................................................................AACGACGGTCAACACT------------------TTTT-CCCAA...........................................................................................................................................2530.672020000
........................................................................................................................................................................ACGACGGTCAACACT------------------TTTT-CCCAT...........................................................................................................................................2430.672020000
...........................................................................................................................................................................................................................CG---------------TCACTGACAAAACCGAAAA-AGACC.........................................................................................2690.676060000
.....................................................................................................................................................................................................................................................................................................TTTTTGTCTCTTCGCTTGTGTT...................................22160.569090000
.....................................................................................................................................................................................................................................................................................................TTTTTGTCTCTTCGCTTGTGTTATG................................25130.547070000
.............................................................................................................................................................................................................................................................................................................TCTTCGCTTGTGTTATGTGTTTCGG........................25100.505050000
..............................................................................................................................................................................................................................................ACTGACAAAACCGAAAA-AGACCACGCA....................................................................................2720.501010000
................................................................................................................................................................................................................................................TGACAAAACCGAAAA-AGACCACGCA....................................................................................2520.501001000
............................................................................................................................................................................................................................G---------------TCACTGACAAAACCGAAAA-AGACCA........................................................................................26100.505050000
.....................................................................................................................................................................................................................................................................................TCACTGAGCAGAACACTTTTTGTC.................................................24200.408170000
.............................................................................................................................................................................................................................................................................................................TCTTCGCTTGTGTTATGTGTTTCGGG.......................26100.404130000
..............................................................................................................................................................................................................................................ACTGACAAAACCGAAAA-AGACCAC.......................................................................................24110.364040000
...........................................................................................................................................................................ACGGTCAACACT------------------TTTT-CCCAT...........................................................................................................................................2130.331010000
......................................................................................................................................................................AAACGACGGTCAACACT------------------TTTT-CCCATTC.........................................................................................................................................2830.331010000
......................................................................................................................................................................AAACGACGGTCAACACT------------------TTTT-CCCATAA.........................................................................................................................................2830.331010000
......................................................................................................................................................................AAACGACGGTCAACACT------------------TTTT-................................................................................................................................................21150.335050000
......................................................................................................................................................................AAACGACGGTCAACACT------------------TTTT-CCCATTGA........................................................................................................................................2930.331010000
............................................................................................................................................................................................................T-CCCATTGCTGTCTCG---------------TCACT.............................................................................................................2130.331010000
............................................................................................................................................................................................................T-CCCATTGCTGTCTCG---------------TCACTGACAAA.......................................................................................................2730.331010000
...........................................................................................................................................................................................................TT-CCCATTGCTGTCTCG---------------TCACTG............................................................................................................2330.331010000
.................................................................................................................................................................................................................ATTGCTGTCTCG---------------TCACTGA...........................................................................................................1930.331001000
...........................................................................................................................................................................................................TT-CCCATTGCTGTCTCG---------------TCACTGACA.........................................................................................................2630.331010000
......................................................................................................................................................................AAACGACGGTCAACACT------------------TTTT-CCCAA...........................................................................................................................................2630.331010000
.......................................................................................................................................................................AACGACGGTCAACACT------------------TTTT-CCCATT..........................................................................................................................................2630.331010000
............................................................................................................................................................................................................T-CCCATTGCTGTCTCG---------------TCACTGACAA........................................................................................................2630.331010000
..............................................................................................................................................................................................................CCCATTGCTGTCTCG---------------TCACTGAC..........................................................................................................2330.331010000
...........................................................................................................................................................................................................................................................................AAACGGTCTCTCACTGAGC................................................................1930.331010000
...............................................................................................................................................................................TCAACACT------------------TTTT-CCCATTGCTGTCTCG---------------..................................................................................................................2730.331010000
......................................................................................................................................................................................T------------------TTTT-CCCATTGCTGTCTCG---------------..................................................................................................................2030.331010000
......................................................................................................................................................................AAACGACGGTCAACACT------------------TTTT-CCCATTT.........................................................................................................................................2830.331010000
.......................................................................................................................................................................AACGACGGTCAACACT------------------TTTT-CCCATTT.........................................................................................................................................2730.331010000
.........................................................................................................................................................................................................................................................................AGAAACGGTCTCTCACTGAGCAGA.............................................................2430.331010000
............................................................................................................................................................................................................................G---------------TCACTGACAAAACCGAAAA-AGAC..........................................................................................24100.303030000
.....................................................................................................................................................................................................................................................................................................................TGTGTTATGTGTTTCGGGTTTTC..................23110.273030000
......................................................................................................................................................................AAACGACGGTCAACACT------------------T....................................................................................................................................................18150.274220000
......................................................................................................................................................................................................................TGTCTCG---------------TCACTGACAAAACCGAAA................................................................................................25120.253030000
........................................................................................................................................................................................................................TCTCG---------------TCACTGACAAAACCGAAAA-AGAC..........................................................................................2890.222020000
.................................................................................................................................................................................................................................................................................................................CGCTTGTGTTATGTGTTTCGGGTTT....................25100.202020000
....................................................................................................................................................................................................................................................................................................CTTTTTGTCTCTTCGCTTGTGTT...................................23150.203030000
.........................................................................................................................................................................................................................CTCG---------------TCACTGACAAAACCGAAAA-AGA...........................................................................................26100.202020000
........................................................................................................................................................................................................................TCTCG---------------TCACTGACAAAACCGAAAA-AG............................................................................................26100.202020000
.....................................................................................................................................................................................................................................................................................TCACTGAGCAGAACACTTTTTG...................................................22200.204040000
............................................................................................................................................................................................................................................TCACTGACAAAACCGAAAA-AGACCG........................................................................................25100.202020000
................................................................................................................................................................................................................................................................................................................TCGCTTGTGTTATGTGTTTCGGGT......................24100.202011000
......................................................................................................................................................................AAACGACGGTCAACACT------------------TT...................................................................................................................................................19150.203030000
..................................................................................................................................................................................................................................................................................................CACTTTTTGTCTCTTCGCTTGTGT....................................24160.193021000
............................................................................................................................................................................................................................................TCACTGACAAAACCGAAAA-AGACCAA.......................................................................................26110.182020000
..............................................................................................................................................................................................................................................ACTGACAAAACCGAAAA-AGACC.........................................................................................22110.182020000
.....................................................................................................................................................................................................................................................................................................TTTTTGTCTCTTCGCTTGTGT....................................21180.173030000
...................................................................................................................................................................................................................TGCTGTCTCG---------------TCACTGACAAAACCG...................................................................................................25120.172020000
......................................................................................................................................................................................................................TGTCTCG---------------TCACTGACAAAACCGAA.................................................................................................24120.172020000
...................................................................................................................................................................................................................TGCTGTCTCG---------------TCACTGACAAAACCGA..................................................................................................26120.172020000
......................................................................................................................................................................AAACGACGGTCAACACT------------------TTTT-CCA.............................................................................................................................................24130.152020000
.............................................................................................................................................................................................................................................................................ACGGTCTCTCACTGAGCAGAACACTT.......................................................26200.153030000
.................................................................................................................................................................................................................................................................................TCTCTCACTGAGCAGAACACTTTT.....................................................24200.153030000
..............................................................................................................................................................................................................................................................................CGGTCTCTCACTGAGCAGAACACTT.......................................................25200.153030000
.............................................................................................................................................................................................................................................................................ACGGTCTCTCACTGAGCAGAACACT........................................................25200.153120000
................................................................................................................................................................................................................................................TGACAAAACCGAAAA-AGACCACG......................................................................................2370.141010000
......................................................................................................................................................................................................................................................................................................TTTTGTCTCTTCGCTTGTGTTATG................................24140.142020000
.............................................................................................................................................................................................................................................CACTGACAAAACCGAAAA-AGACCACGG.....................................................................................2770.141010000
...............................................................................................................................................................................................................................................................................................................TTCGCTTGTGTTATGTGTTTCG.........................22160.132020000
.......................................................................................................................................................................................................................................................................................................TTTGTCTCTTCGCTTGTGTTATGTGT.............................26160.132020000
......................................................................................................................................................................................................................................................................................................TTTTGTCTCTTCGCTTGTGTT...................................21170.122010001
...........................................................................................................................................................................................................................CG---------------TCACTGACAAAACCGAAAA-AGACA.........................................................................................2690.111010000
...........................................................................................................................................................................................................................CG---------------TCACTGACAAAACCGAAAA-AGACCAA.......................................................................................2890.111010000
.........................................................................................................................................................................................................................................................................................TGAGCAGAACACTTTTTGTCTCTTCGCT.........................................28180.112020000
.....................................................................................................................................................................................................................................................................................TCACTGAGCAGAACACTTTTTGTCTC...............................................26190.112020000
..........................................................................................................................................................................................................................TCG---------------TCACTGACAAAACCGAAAA-AGA...........................................................................................25100.101010000
...........................................................................................................................................................................................................................................................................................................TCTCTTCGCTTGTGTTATGTGTTTCGGG.......................28100.101010000
...........................................................................................................................................................................................................................................................................................................TCTCTTCGCTTGTGTTATGTGTTTCGG........................27100.101010000
.................................................................................................................................................................................................................................................................................................................CGCTTGTGTTATGTGTTTCGGGT......................23100.101010000
................................................................................................................................................................................................................................................................................................................TCGCTTGTGTTATGTGTTTCGGGTT.....................25100.101010000
.............................................................................................................................................................................................................................................CACTGACAAAACCGAAAA-AGAC..........................................................................................22100.101010000
............................................................................................................................................................................................................................................TCACTGACAAAACCGAAAA-AGACCAG.......................................................................................26100.101010000
.................................................................................................................................................................................................................................................................................................................CGCTTGTGTTATGTGTTTCGGG.......................22100.101010000
...............................................................................................................................................................................................................................................................................................................TTCGCTTGTGTTATGTGTTTCGGGT......................25100.101010000
............................................................................................................................................................................................................................................TCACTGACAAAACCGAAAA-AGACCACC......................................................................................27100.101100000
..............................................................................................................................................................................................................................................................................................................CTTCGCTTGTGTTATGTGTTTCGGGA......................26100.101010000
........................................................................................................................................................................................................................TCTCG---------------TCACTGACAAAACCGAAAA-AGG...........................................................................................27100.101010000
......................................................................................................................................................................................................................................................................................CACTGAGCAGAACACTTTTTGTC.................................................23200.102200000
................................................................................................................................................................................................................................................................................................................TCGCTTGTGTTATGTGTTTCGG........................22100.101010000
...........................................................................................................................................................................................................................CG---------------TCACTGACAAAACCGAAAA-AGG...........................................................................................24100.101010000
.............................................................................................................................................................................................................................................................................................................TCTTCGCTTGTGTTATGTGTTTCGGGT......................27100.101010000
......................................................................................................................................................................................................................TGTCTCG---------------TCACTGACAAAACCGAAAA-..............................................................................................26110.091010000
...............................................................................................................................................................................................................................................CTGACAAAACCGAAAA-AGACCAC.......................................................................................23110.091010000
............................................................................................................................................................................................................................................TCACTGACAAAACCGAAAA-AG............................................................................................21110.091010000
.....................................................................................................................................................................................................................................................................................................................TGTGTTATGTGTTTCGGGTT.....................20110.091010000
............................................................................................................................................................................................................................................TCACTGACAAAACCGAAAA-A.............................................................................................20110.091010000
....................................................................................................................................................................GCAAACGACGGTCAACACT------------------TTTT-CCC.............................................................................................................................................26110.091010000
.....................................................................................................................................................................................................................................................................................................................TGTGTTATGTGTTTCGGGTTTTA..................23110.091010000
................................................................................................................................................................................................................................................TGACAAAACCGAAAA-AGACCAC.......................................................................................22110.091010000
..............................................................................................................................................................................................................................................ACTGACAAAACCGAAAA-AGACCA........................................................................................23110.091010000
........................................................................................................................................................................................................................TCTCG---------------TCACTGACAAAACCGAAAA-..............................................................................................24110.091010000
....................................................................................................................................................................................................................................................................................................................TTGTGTTATGTGTTTCGGGTTTTC..................24110.091010000
....................................................................................................................................................................................................................GCTGTCTCG---------------TCACTGACAAAACCGAA.................................................................................................26120.081010000
...................................................................................................................................................................................................................TGCTGTCTCG---------------TCACTGACAAAACCGAAA................................................................................................28120.081010000
........................................................................................................................................................................................................................TCTCG---------------TCACTGACAAAACCG...................................................................................................20120.081010000
........................................................................................................................................................................................................................TCTCG---------------TCACTGACAAAACC....................................................................................................19120.081010000
......................................................................................................................................................................................................................TGTCTCG---------------TCACTGACAAAACCGA..................................................................................................23120.081010000
.......................................................................................................................................................................................................................GTCTCG---------------TCACTGACAAAACCGAA.................................................................................................23120.081010000
.......................................................................................................................................................................AACGACGGTCAACACT------------------TTTT-CC..............................................................................................................................................22120.081010000
......................................................................................................................................................................................................................................................................................................TTTTGTCTCTTCGCTTGTGTTATGT...............................25120.081010000
...................................................................................................................................................................................................................TGCTGTCTCG---------------TCACTGACAAAACCGAAT................................................................................................28120.081010000
...................................................................................................................................................................................................................TGCTGTCTCG---------------TCACTGACAAAACCGAA.................................................................................................27120.081010000
.....................................................................................................................................................................................................................................................................................................TTTTTGTCTCTTCGCTTGTGTTAT.................................24130.081010000
.....................................................................................................................................................................................................................................................................................................TTTTTGTCTCTTCGCTTGTGTTA..................................23130.081010000
.......................................................................................................................................................................................................................................................................................................................TGTTATGTGTTTCGGGTTTT...................20130.081100000
.......................................................................................................................................................................AACGACGGTCAACACT------------------TTTT-CCA.............................................................................................................................................23130.081010000
......................................................................................................................................................................................................................................................................................................TTTTGTCTCTTCGCTTGTGTTAA.................................23140.071000001
......................................................................................................................................................................................................................................................................................................TTTTGTCTCTTCGCTTGTGTTATAA...............................25150.071010000
......................................................................................................................................................................AAACGACGGTCAACACT------------------TTT..................................................................................................................................................20150.071010000
..........................................................................................................................................................................................................................................................................................................................TATGTGTTTCGGGTTTTC..................18150.071010000
...............................................................................................................................................................................................................................................................................................GAACACTTTTTGTCTCTTCGCTTGTGT....................................27160.061010000
...................................................................................................................................................................................................................................................................................................ACTTTTTGTCTCTTCGCTTGTGT....................................23160.061010000
.................................................................................................................................................................................................................................................................................................ACACTTTTTGTCTCTTCGCTTGTGT....................................25160.061010000
.........................................................................................................................................................................................................................................................................................................TGTCTCTTCGCTTGTGTTATGTGT.............................24160.061010000
..........................................................................................................................................................................................................................................................................................................GTCTCTTCGCTTGTGTTATGT...............................21160.061010000
.......................................................................................................................................................................................................................................................................................................TTTGTCTCTTCGCTTGTGTTATGTG..............................25160.061010000
..........................................................................................................................................................................................................................................................................................................GTCTCTTCGCTTGTGTTATGTG..............................22160.061010000
.........................................................................................................................................................................................................................................................................................................TGTCTCTTCGCTTGTGTTATGTGA.............................24160.061010000
.....................................................................................................................................................................................................................................................................................TCACTGAGCAGAACACTTTTTGTCTCT..............................................27180.061010000
..............................................................................................................................................................................................................................................................................................AGAACACTTTTTGTCTCTTCGCTTG.......................................25180.061010000
..............................................................................................................................................................................................................................................................................CGGTCTCTCACTGAGCAGAACACTTTT.....................................................27180.061010000
.......................................................................................................................................................................................................................................................................................................TTTGTCTCTTCGCTTGTGTTATG................................23180.061010000
...........................................................................................................................................................................................................................................................................................................TCTCTTCGCTTGTGTTATGTG..............................21180.061010000
.........................................................................................................................................................................................................................................................................................TGAGCAGAACACTTTTTGTCTCTTCGC..........................................27180.061010000
.................................................................................................................................................................................................................................................................................................ACACTTTTTGTCTCTTCGCTTG.......................................22190.051010000
.......................................................................................................................................................................................................................................................................................................TTTGTCTCTTCGCTTGTGTTA..................................21190.051010000
..................................................................................................................................................................................................................................................................................................CACTTTTTGTCTCTTCGCTTGT......................................22190.051010000
.............................................................................................................................................................................................................................................................................................................TCTTCGCTTGTGTTATGTGTT............................21190.051010000
......................................................................................................................................................................................................................................................................................CACTGAGCAGAACACTTTTTGTCTCT..............................................26190.051010000
.................................................................................................................................................................................................................................................................................TCTCTCACTGAGCAGAACACTTTTTGTC.................................................28190.051010000
..............................................................................................................................................................................................................................................................................................................CTTCGCTTGTGTTATGTG..............................18200.051010000
.................................................................................................................................................................................................................................................................................TCTCTCACTGAGCAGAACACTT.......................................................22200.051010000
.............................................................................................................................................................................................................................................................................................CAGAACACTTTTTGTCTCTT.............................................20200.051010000
.................................................................................................................................................................................................................................................................................TCTCTCACTGAGCAGAACACTTT......................................................23200.051010000
.............................................................................................................................................................................................................................................................................................CAGAACACTTTTTGTCTCTTCGCT.........................................24200.051010000
.............................................................................................................................................................................................................................................................................ACGGTCTCTCACTGAGCAGAACAC.........................................................24200.051010000
...................................................................................................................................................................................................................................................................................TCTCACTGAGCAGAACACTTTTT....................................................23200.051010000
.......................................................................................................................................................................................................................................................................................................TTTGTCTCTTCGCTTGTGT....................................19200.051010000
droAna3
TTTGGCCATTTTCGGGAAGTAGT--------AC---TCGGAGAGTACCTGCTTATTGATTGCC-----------CTAAGA----------TG----------GCTTCCTAAGGGCA---------------C-AATACATGTTATTA-GTTATTATCATAGCTTGCAAATAACTGCCGACCGT------------------TTTT-TTTCTTGAGCTCTCG---------------TTGCGAGCACAACCGAAAA-AGTTCATACTCTTTCGCTCTCGCTCTGAGCAAGAGACTTTTGCTATCTTTATTTCTGTTTCCTGTTGAGCGT-TTTCGTTGAGCTC--------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................TCTCG---------------TTGCGAGCACAACCGAAAA-AGT...........................................................................................2780.383030000
........................................................................................................................................................................................................................TCTCG---------------TTGCGAGCACAACCGAAAA-AG............................................................................................2680.252200000
..........................................................................................................................................................................................................................TCG---------------TTGCGAGCACAACCGAAAA-AGT...........................................................................................2580.252020000
.............................................................................................................................................................................................................................................................AA-AGTTCATACTCTTTCGCTCTCGC.......................................................................25110.182200000
.........TTTCGGGAAGTAGT--------AC---TCGGAGAGTACC..............................................................................................................................................................................................................................................................................................................28200.153300000
..........TTCGGGAAGTAGT--------AC---TCGGAGAGTACC..............................................................................................................................................................................................................................................................................................................27200.153300000
.......................................................................................................................................................................................................................................................................................................................TGTTTCCTGTTGAGCGT-TTTCGTTGA............26140.142010010
.......................................................................................................................................................................................................................................................................................................................TGTTTCCTGTTGAGCGT-TTTCGTTGAGC..........28140.142200000
..........................................................................................................................................................................................................................................................................................................................TTCCTGTTGAGCGT-TTTCGTTGAGC..........25140.142110000
.....................................................................................................................................................................................................................................................................................................................TCTGTTTCCTGTTGAGCGT-TTTCGT...............25150.132020000
.......................................................................................................................................................................................................................................................................................................................TGTTTCCTGTTGAGCGT-TTTCGTT..............24150.132200000
........................................................................................................................................................................................................................TCTCG---------------TTGCGAGCACAACCGAAAA-AGTT..........................................................................................2880.131100000
.....................................................................................................................................................................................................................................................................................................................TCTGTTTCCTGTTGAGCGT-TTTCG................24160.132000020
.......................................................................................................................................................................................................................CTCTCG---------------TTGCGAGCACAACCGAAAA-AGT...........................................................................................2880.131100000
..........................................................................................................................................................................................................................TCG---------------TTGCGAGCACAACCGAAAA-AG............................................................................................2480.131100000
.............................................................................................................................................................................................................................................TGCGAGCACAACCGAAAA-AGTTCATAC.....................................................................................2790.111100000
.............................................................................................................................................................................................................................................................AA-AGTTCATACTCTTTCGCTCTCGCTCTG...................................................................29110.091100000
...........................................................................................................................................................................................................................................................................................................................TCCTGTTGAGCGT-TTTCGTTGAGC..........24140.071100000
........................................................................................................................................................................................................................................................................................................................GTTTCCTGTTGAGCGT-TTTCGTTGA............25140.071100000
...........................................................................................................................................................................................................................................................................................................................TCCTGTTGAGCGT-TTTCGTTGAG...........23140.071100000
.......................................................................................................................................................................................................................................................................................................................TGTTTCCTGTTGAGCGT-TTTCGTTG.............25140.071100000
.........................................................................................................................................................................................................................................................................................................................TTTCCTGTTGAGCGT-TTTCGTTGAGC..........26140.071010000
..........................................................................................................................................................................................................................................................................................................................TTCCTGTTGAGCGT-TTTCGTTGAGCT.........26140.071010000
........................................................................................................................................................................................................................................................................................................................GTTTCCTGTTGAGCGT-TTTCGTTGAGC..........27140.071100000
..........................................................................................................................................................................................................................................................................................................................TTCCTGTTGAGCGT-TTTCGTTGAG...........24140.071100000
.....................................................................................................................................................................................................................................................................................................................TCTGTTTCCTGTTGAGCGT-TTTCGTC..............26150.071010000
...................................................................................................................................................................................................................................................................................................................TTTCTGTTTCCTGTTGAGCGT-TTTCGT...............27150.071010000
...................................................................................................................................................................................................................................................................................................................TTTCTGTTTCCTGTTGAGCGT-TTTC.................25160.061000010
...................................................................................................................................................................................................................................................................................................................TTTCTGTTTCCTGTTGAGCGT-TTTCG................26160.061100000
....................................................................................................................................................................................................................................................................................................................TTCTGTTTCCTGTTGAGCGT-TT...................22160.061100000
.....CCATTTTCGGGAAGTAGT--------AC---TCGGA.....................................................................................................................................................................................................................................................................................................................25200.051010000
...........TCGGGAAGTAGT--------AC---TCGGAGAGTA................................................................................................................................................................................................................................................................................................................24200.051100000
droBip1
CTTTTGG---------------------------------------------------------------------------------------------------------------------------------------------CTTCCAACCATAGCTTGCAAATAACTGTTAACCGT------------------TTTT-TTCTTTACGCTCTGT---------------TCGCGAGAACAACCGAAAA-AAAGCATGCCGTTTCGGTTTCTCTCTGAGCAGCAGACTTTGTTTCTTTTTGTTTCGATTTTCTGTTGAAAGCATTACGATGAGCCG--------SizeHit CountTotal NormTotal
No Reads
droKik1
TATGCAAATG-----------------------------------------------------------------------------------------------------------------------------T--ATTAGAC-CTGTAAAAACCAGAGCTTGCAAATAACTGTTGACGGG------------------GTTT-T-TCCTGTGCTCTCG---------------TTGCGAGTAAAACCGAAAA-AGATCATACTCTCTCGCTCTCGTTCAGAGCAAGGGAGTTTTGCTGTCTTCATTTCGGTTTTTTGTTGAACGCTTTTCGTTGAGCTC--------SizeHit CountTotal NormTotal
No Reads
droFic1
TGCACGAAT------------------------------------------------------------------AAACGATTTATAA----------------------CGTTAA---------------AGCTCATATTGTTT-A-ATTTAAACCAGAGCTCGCAAATAACAGTTGACCGT------------------TTTT-CATCTAGTGCTCTCG---------------GTGCGAGCACAACCGAAAA-AGTTCATACTGTCTCGCTCTCGCTCTGAGCAAGAGCCCCTTGCTGTCATCCTTTGTGTTTTCTGTTGAGCACTTTTTGTTGAGCTC--------SizeHit CountTotal NormTotal
No Reads
droEle1
CCAGGCCACCATCAAGGCCAAAA--------CCTTCTTCAAAAGCTGCATGGATAT-----ACGT------GAG----------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA--------SizeHit CountTotal NormTotal
No Reads
droRho1
ATAGTTG----------------------------------------T-----------------GCAA---------------------------------------------------------------CTTTATGC-------AGTCAAA----ACGCTATTAACTAACTGTTGACCGT------------------TTTT-CTTCTTGCGCTCTCG---------------TTGCAAGCACAACCGAAAA-AGTTCATACTCTCTCGCTCTCGCTCTGAGCAAGAGACTCTTTCTGTATTCATTTATGTTTTCTGTTGAGCGCTTTTCGTTGAGAAA--------SizeHit CountTotal NormTotal
No Reads
droBia1
TATAAA--------------------------------------------------------------------------------------------------------TGTGAA---------------TGTGTATATTATTT-CGCTTATTATCAGAGCTTGTAAATAACTGTCGACCGT------------------TTTTTTTTCTTGTGCTCTCG---------------TTGCGAGCACAACCTAAAA-AGTTCATACTCTCTCGCTCTCGCTCTGAACAAGAGACTTTTGCTGCCTTCAATTCTGTTTTCTGATGAGCGCTTTTCGTTGAGCCC--------SizeHit CountTotal NormTotal
No Reads
droTak1
AAACCAA----------------------------------------T-----------------ATAC------ATATGATATCTTATAT----------GTT------------------------------------------A-GTTTTAACCAAAGCATGCAAATAACTGTTAACCGT------------------TTTT-TTCCTTACGCTCTAC---------------TCCCGAGAACAACCGAAAA-ATAGCATGCCC-CTCGTTCTCTCTCTGCGCAGCACACTTCGTTTCCTTTCGTTTTGGTTTTCGGTTGAGCCTTTTACGTTGAGCTG--------SizeHit CountTotal NormTotal
No Reads
droEug1
CAAGGCCACCATCAAGGCCAAAA--------CCTTCTTCAAAAGCTGCATGGATAT-----ACGT------AAG----------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TGCAGCGACAGCCACTGCAATTCTCTATGTACGTGCTCAGAGATA--TATGTGTC-------------------CATATA----------TA----------TGTACATATATATATGTATAT-----A----T--AT--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATA--------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................ACGTGCTCAGAGATA--TATG...........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACGGTAGAC---------GAAAA--------CGTGTAACAGAAAGTATATCCATAT-----GTAT------GT--ATATA----------CA----------TATGTATATGTATA------T-----ACATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATG--------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CAAGGCCACCATTAAGGCCAAAA--------CCTTCTTCAAGAGCTGCATGGATAT-----TCGT------AAG----------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CAAGGCCACCATAAAGGCGAAAA--------CCTTCTTCAAGAGCTGCATGGATAT-----TCGT------AAG----------------------T--------TGAACTCTTCATGTTTAG-----C----T--AT--TTTAT---------------------AATTAAT-----------------------------------------TTTAAAT---------------TTGCTATCACAAGCTAACG-CTTTTTCATTCTCTCAATCGC----------------------------------------------------------------A--------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................CTGCATGGATAT-----TCGT------AAG----------------------T--------T....................................................................................................................................................................................................................................................2111.00100000010000
.....................AA--------CCTTCTTCAAGAGCTGCATGGATAT-----.................................................................................................................................................................................................................................................................................................2711.00100000010000
droEre2
CAAGGCCACGATAAAGGCAAAAA--------CCTTCTTCAAGAGCTGCATGGATAT-----ACGT------AAG----------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA--------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........TAAAGGCAAAAA--------CCTTCTTCAAGAGC.................................................................................................................................................................................................................................................................................................................2611.0010000001

Generated: 05/17/2015 at 10:28 PM