dmo_478

Name	Class	Family	Strand
GA-rich	Low_complexity	Low_complexity	+
(TTG)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ACAGCAGTCGGTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGAGCACAACAGAGCACCAAACAACAACAACAACTACTACTCCAACAATAACAACCACTACAACAGCAACAACAACAACAATAAACAACAACAACAACAACAAGAACAAGAACAAGCAACAACATATTTGCACCACAACAAGCATTGCTCTCTGTCTATCACACACTCTCTCTCTCTCTCCCTTTCTGTCTCCATATA ************************************************......................................................................................................................(((...........................)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo
....................................GTCCAAACTACTAGGTGGG....................................................................................................................................................................................................	19	3	6	0.17	1	1	0
...........................................................................................................................................................AGAACAAGAAAAAGAAACAAC...........................................................................	21	2	20	0.05	1	0	1

TGTCGTCAGCCACTGTAGCATGCTCAGGGATTTTTTCAGGTTTAGTGTTCCACCCTCGTGTTGTCTCGTGGTTTGTTGTTGTTGTTGATGATGAGGTTGTTATTGTTGGTGATGTTGTCGTTGTTGTTGTTGTTATTTGTTGTTGTTGTTGTTGTTCTTGTTCTTGTTCGTTGTTGTATAAACGTGGTGTTGTTCGTAACGAGAGACAGATAGTGTGTGAGAGAGAGAGAGAGGGAAAGACAGAGGTATAT ************************************************......................................................................................................................(((...........................)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	M046 female body
............................GATTTTTTCAGGTTTAGTGTT..........................................................................................................................................................................................................	21	0	1	1.00	1	1	0
........................................................................................................ATTGGTGATGTGGTCGTTG................................................................................................................................	19	2	18	0.06	1	1	0
...............................................................................................................ATGTTGTCGTTGTTGTTGTTG.......................................................................................................................	21	0	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6328:924798-925048 -	dmo_478	ACAGCAGTCG--GTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------CA----------------------------------------AACAACAA-CAACAACT-----ACTACTCCAA------------------------------CAATAACAACCACTAC-----------------AACAGCAACAAC------------------AACAACAA--------------------------TA-------AACAACAACAACAAC--------------------------------------------------------AACAAGAACAAG---------AACA-------------AGCAAC----------------AACATA----------TTTGCACCAC--------------------AACAAGCA------T-----TGCTCTCT-GTCTA----T-CACACA--------C-------------TC------TCTCT----------CTCTCTC----CCTTTCTGT--CTCCATATA
droVir3	scaffold_13052:1897950-1898200 -		GCAACAGCCG--CAGCAGCAGCAGCAGCCGCAGCAGCAGCCGCAGCAGCAA----------C--------A---------------------------------GCAGCAGCAAATGCAGCAACATCAAA--ATCA---------------GCTGCCG---------------------------------------TAACAGCCGCAGC-----------------AGCAGCAGCAGC----------------------------------------------------------------AGCAGCAGCAGCA-GCAG-------CAG--------------------------C-------AGCCACAACAACAACAACAA------CAACA---------------------------------------AC-----------AACAACAAC--------------------AACAACAACAACAAT-----ATCATC-AT--CAAAACAACAGCGCCAT------C-----AAATCGGTCA------ATATG----------ACCAACATC----CACTTAA--CACATCAAT
droGri2	scaffold_15203:5489622-5489898 +		ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGAGAGCACAAACAGAGAGCAC-------------T---GTTAACAGCC--------------------------ACAACAA---------------------------------------------------------CAACAACAATAACTAC-----------------AACAATAACAAC------------------AAC------AACAAAC----TACTATAACAACTAGTATT-GCAAGATTAA---AA-----------------------------------------------------------CGAAAAAAAAGA------------AAAGAAAAACAAAAACA-----GAGCA----ACTGCAACAAA-----------CTGCACCAC--------------------AACAAGCA------T-----TTCTCTCTT--CTT--------------------------AATCTCTCTC------TCTCT----------CTCTATC----CCTCTCTCA--CACTCTGTC
droWil2	scf2_1100000004909:1909997-1910180 +		ACAGCAGTCA--GTGACATCGTATGAATCTTTCAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC----------------AGTTAACAACA--------------------------ACAACAA---------------------------------------------------------CAACAACAACTATTAC-----------------AACAACAACAAC------------------AACAACAATAACAAC-------------------------------AACAACCAG-----------------------------------------------------------AACAACAAGAAA---------AA--------------------------CA----AC---TGCAACCTGCAAC---------CTAC--------------------AGCAAGAA-----------------------------------------------------------------------------------------------------------------T
dp5	XL_group1a:3330609-3330911 +		ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCACAGTGTTTACAACCTACAGCA-----------------------------------AACAGCAA-------CCAAACTACCGTT--AACAGAGCACAGTTTTGTTGGCAGTAAACGGCCAACAGCAAACAGCAAAACTACCGTTAACAGCC---------------------------------------------------AGAACCACATGAACAACA-ACAAGCAACAACTACAGCAAACAGCAAACAGCAATACTGCAACAACAAATGCACCAACAAATCACAGA-------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------ACAAC--ATGCGTTCTCTCTCTCT----------CT----C----TCTCTCTTA-----CACAGA
droPer2	scaffold_77:177267-177562 -		ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCACAGTGTTTACAACCTACAGCA-----------------------------------AACAGCAA-------CCAAACTACCGTT--AACAGAGCACAGTTTTGTTGGCAGTAAACGGCCAACAGCAAACAGCAAAACTACCGTTAACAGCC---------------------------------------------------AGAACCACATGAACAACA-ACAAGCAACAACTACAGCAAACAG-------CAATACTGCAACAACAAATGCACCAACAAATCACAGA-------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------ACAAC--ATGCGTTCTCTCTCTCT----------CTCTCTC----TCTCTCTTA---------CA
droAna3	scaffold_13117:3453767-3453956 +		ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAATCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------AATAACA------------------------------------ACA----ACAACAACA-----ACAG-------------------------CAAC-TACAGC-AACAGCAACTATAAT-----------------TACAACAACAAC---------------AACAACAATAAT----------------------------------AGCAACAACAA----------------------------------------------TCCACAAA------AACAACAACAAC------------------------------------------------TACAAA-----------TAGCACAAC--------------------AA------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000395895:98548-98722 -		ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAAACCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------AACAACA---------------------------------ACAACAA----------------------------------------------CAAG-AACAGCAAACTGCAACAACAAC-----------------AGCAACAACAAC------------------------TA--------------TGATTACAACAACAATT-GC------------------------------------------------------------------------AACAACAACAAC------------------------------------------------AACAGA-----------TTGCACTTC--------------------AAAA---------------------------------------------------------------------------------------------------------------------A
droKik1	scf7180000302610:151768-152000 +		ATTCCGGAGG--CAACAAGTGC-----------AACAAGTGCAATTCCCATAATAACA--AT--------A---------------------------------GCAATTGCAACAATAATAATAAT--------------------------------------------------------------ACAATTAGTAACAACAACAAC-----------------AACAACAATAAT------------------AA-----------------------TAGTAGCAATAATA-ACAA-CAACAACAACAAC--------------------------------------------------------AATACGAACAACAA------CAACA---------------------------------------AT-----------ATCCATTAC--------------------AACAATTA------C-----AATAACTAT--TAT---AA-GA---------------AAAAG--TCTCGT------ATGCC----------GCCCATTTG----CCGTTAG--TATTGCATT
droFic1	scf7180000453882:298490-298677 +		ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------TACAGAA-A---------------------------------AACAACAA-------CTA-----CAACTACAACAA----------------CAAT-AACAGCTAACAGCAATCACTAC-----------------AACAA-----------------------------------------------------CAGCAATAAAT-ACAAGCAACAACAAC-----------------------------------------------------------AGCAACAACAAC---T---------------------------------------------ATTAA------CAAG-CA--ACAA---------------------------------------------------------------------------------------------------------------------------------------------CA
droEle1	scf7180000491023:223444-223631 +		ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------TACAGTA-----------------------------------AACA-----------------------------------------------------ACAACTAACAGCAACCACTAC-----------------AACAACAACTA-----------------------------------------------CAGCAATAAAT-ACAAGAAACAACCAA-----------------------------------------------------------AGCAACAAAAGC------------AACAAATAACAAAAACA-----AAAA------A-GAAACAAA-----------TTGCACC------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000779985:139022-139298 -		ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------TACAGTA-----------------------------------AACA-----------------------------------------------------ACAGCTAACAGCAACCACTAC-----------------AACAACAACAAC------------------AAC--------------------------AGCAATAAAT-ACAAGAAACAACTAC-----------------------------------------------------------TGCAACAACAACAAC------------AAATA------ACAAACC-AAAA------A-AAAACAAA-----------TTGCACCTTTAGTCATGAAC------AACAAATAGCA------T-----TTTTTTCAAGTGTA----C-CACACA--------CAGGC---ACCTTCTA------TATACAGTTGAACTTCTCT----AACGTGAT-------------AA
droBia1	scf7180000301760:4502473-4502745 +		ACAGGAGTGATGATGACGACGA------------CGACGACACAATCACAAG-----------CA-AC--AT------------------------TAGCA-CC--------------------------ACAACAACA-GCAACAACC-----ACTGCCACAA-------------------CAGC-AACAGCAA-------CAAAAAA-----------------A----CA----GAAAAACAACAGCAACCACC--------------------ACCACAACAGCACCAACA-ACACACAGCAGCAACAGCA-ACAG-------CAA------------------------------------C---AGCAAC---ATCAACTTTAACAGCA-------------ACA-----ATAA------C-TATATAAA-----------TAA----------------------------CAATAA------T-----ATTAAC-GC--CGACACTG------C--------CAG---AGTCTCTGTC------TCTGC----------CTCT----GCCCCCGCCTTCGC-----CTCC
droTak1	scf7180000414425:216096-216284 +		ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------TACAGAA-A------AAACCATA-----------------ACAACAA----------------------------------------------CAAT-AACAGCTAACAGCAATCACTAC-----------------AACAACAACAAC------------------AACA------------------AAATAACAGCAATAAAT-ACAAGCAACAACTACAAC--------------------------------------------------------AGCAAGAACAACAA------CAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409110:929674-929879 +		ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------TACAGTA-----------------------------------AACA-----------------------------------------------------ACAGCTAACAGCAACCACAAC-----------------AACAACAACAA---------------------------------------------------AATATATAACAAGCAACAACTACAGCA-ACAA-------CAA--------------------------T-------------AACAATAACAAC------AACAGCAACAAATA-------CCAACC-AACAAAAAA-C-CAAACAAA----------TTTGCACC------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chrX:12543166-12543435 +		ACAGCAGTCA--GTGACATCGTACGAATCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------TACAGTA-----------------------------------AACA-----------------------------------------------------ACAGCTAACAGCAACCACTAC-----------------AACAACTACAAC------------------AACAACAATAGCAACC----AAATATAACAGCAAGCAAT-ACAAGCAACAACAAC-----------------------------------------------------------AGCAA-AACAACAACCTAAACAGCA-------------ACCAACCA---------AA-TAATCAGA-----------TTGCACCTCTAGTCATGAAAAAAAAAAACAATTCGCA------TATTTTTTTTTACCAGTATA----C-CACG----------------------------------------------------------------------------CA
droSim2	x:11899387-11899646 +		ACAGCAGTCA--GTGACATCGTACGAATCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------TACAGTA-----------------------------------AACA-----------------------------------------------------ACAGCTAACAGCAACCACTAC-----------------AACAACTACAAC------------------AAC---AATAGCAACC----AATTATAACAGCAAGCAAT-ACAAGCAACAACAAC-----------------------------------------------------------AGCAAAAACAACAACCTAAACAGCA-------------ACCAACCA---------AA-TAATCAGA-----------TTGCACCTCTAGTCATGAAA------AACAAATTGCA------TA--TTTTTTTACCAGTATA----C-CACG----------------------------------------------------------------------------CA
droSec2	scaffold_21:297560-297813 +		ACAGCAGTCA--GTGACATCGTACGAATCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------TACAGTA-----------------------------------AACA-----------------------------------------------------ACAGCTAACAGCAACCACTAC-----------------AACAACAACAA---------------------------TAGCAACC----AAATATAACAGCAAGCAAT-ACAAGCAACAACAAC-----------------------------------------------------------AGCAAAAACAACAACCTAAACAGCA-------------ACCAACCA---------AA-TAATCAGA-----------TTGCACCTCTAGTCATGAAA------AACAAATTGCA------TA--TTTTTTTACCAGTATA----C-CACG----------------------------------------------------------------------------CA
droYak3	v2_chrX_random_027:298-472 +		ACAGCAGTCA--GTGACATCGTACGAATCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCACAA----------CTACAGTA-----------------------------------AACAA----------------------------------------------CAAC-TACAGCTAACAGCAACCACTAC-----------------AACAACAATAAC------------------AACAACAATAACAACCACCAAAATATAACAGCAAGCAAT-ACAAGCAACAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4690:14315734-14316041 -		ACAGCAGTCA--GTGACATCGTACGAATCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------TACAGTA-----------------------------------AACA-----------------------------------------------------ACAGCTAACAGCAACCACTAC-----------------AACAACTACAAC------------------AAC------------C----CAATATAACAGCAAGCAAT-ACAAGCAACAACAAC-----------------------------------------------------------AGCAAAAACAAC---CTAAACAGCA-------------ACCAACC-AAAA------A-TAATCAGA-----------CTGCACCTCTAGTCATGAAC------AACAAATTGCA------TAATTTTTTTTACCAGTGTA----C-CACGCA--CACACACAAAC---ACACTTTA------AATGCAGTTGAACTTCTCT----ATCGCGACCAACGA-----GTGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

ACAGCAGTCG--GTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------CA----------------------------------------AACAACAA-CAACAACT-----ACTACTCCAA------------------------------CAATAACAACCACTAC-----------------AACAGCAACAAC------------------AACAACAA--------------------------TA-------AACAACAACAACAAC--------------------------------------------------------AACAAGAACAAG---------AACA-------------AGCAAC----------------AACATA----------TTTGCACCAC--------------------AACAAGCA------T-----TGCTCTCT-GTCTA----T-CACACA--------C-------------TC------TCTCT----------CTCTCTC----CCTTTCTGT--CTCCATATA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droVir3

GCAACAGCCG--CAGCAGCAGCAGCAGCCGCAGCAGCAGCCGCAGCAGCAA----------C--------A---------------------------------GCAGCAGCAAATGCAGCAACATCAAA--ATCA---------------GCTGCCG---------------------------------------TAACAGCCGCAGC-----------------AGCAGCAGCAGC----------------------------------------------------------------AGCAGCAGCAGCA-GCAG-------CAG--------------------------C-------AGCCACAACAACAACAACAA------CAACA---------------------------------------AC-----------AACAACAAC--------------------AACAACAACAACAAT-----ATCATC-AT--CAAAACAACAGCGCCAT------C-----AAATCGGTCA------ATATG----------ACCAACATC----CACTTAA--CACATCAAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCGCCAT------C-----AAATCGGTC.....................................................	22	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	0	1	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCGCCAT------C-----AAATCGGTCA------AT............................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCGCCAT------C-----AAATCGGT......................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCGCCAT------C-----AAATCGGTCA------..............................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCGCCAT------C-----AAATCGGTCA------A.............................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCGCCAT------C-----AAATCGGTCA------..............................................	24	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATC-AT--CAAAACAACAGCGC.............................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCGCCAT------C-----AAATCGGTCA------ATA...........................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCGCCAT------C-----AAATCGGTCA------ATAT..........................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-----ATCATC-AT--CAAAACAACAGCGCCAA------....................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATC-AT--CAAAACAACAGCGCC............................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AT--CAAAACAACAGCGCCAT------C-----AAAT..........................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCGCCAT------C-----AAATCGGTC.....................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATC-AT--CAAAACAACAGCG..............................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGCCAT------C-----AAATCGGTC.....................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACAGCGCCAT------C-----AAAT..........................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................ATGCAGCAACATCAAA--ATCA---------------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AT--CAAAACAACAGCGCCAT------C-----AAA...........................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCGCCAT------C-----AAATCGGTCA------TC............................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AACATCAAA--ATCA---------------GCTGCCG---------------------------------------TAA...............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AT--CAAAACAACAGCGCCAT------C-----A.............................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCGCCAT------C-----AAATCGGT......................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCGCCAT------C-----AAATCGGTCA------AA............................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCGCCAT------C-----AAATCGGC......................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAAT-----ATCATC-AT--C..........................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................CA---------------GCTGCCG---------------------------------------TAACAGCCGCAGC-----------------AGCA................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-----ATCATC-AT--CAAAACAACAGCGCCA...........................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCGCCAT------C-----AAATCGGTCT------..............................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................AACA---------------------------------------AC-----------AACAACAAC--------------------AACAACAACA................................................................................................................	25	20	0.30	6	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CAGCAGCAGCAGCAGCCGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................GCAGCCGCAGCAGCAA----------C--------A---------------------------------GCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GCCG--CAGCAGCAGCAGCAGCCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................CA-GCAG-------CAG--------------------------C-------AGCCACAACAACA.............................................................................................................................................................................................................................	23	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CAGCAGCCGCAGCAGCAGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC--------------------AACAACAACAACAAT-----ATC...................................................................................................	22	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CCGCAGCAGCAGCCGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................GCAG-------CAG--------------------------C-------AGCCACAACAAC..............................................................................................................................................................................................................................	20	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................CAACA---------------------------------------AC-----------AACAACAAC--------------------AACA......................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CAGCAGCAGCAGCCGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AGCAGCCGCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AACAGCCG--CAGCAGCAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CAGCCGCAGCAGCAGCCGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AGCCGCAGCAGCAGCCGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................GCA-GCAG-------CAG--------------------------C-------AGCCACAAC.................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AGCA-GCAG-------CAG--------------------------C-------AGCCACA...................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AGCAGCCGCAGCAGCAGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................CCACAACAACAACAACAA------CAAC............................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA-GCAG-------CAG--------------------------C-------AGCCAC....................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AACAGCCG--CAGCAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................CGCAGCAGCAA----------C--------A---------------------------------GCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................CCACAACAACAACAACAA------CAACA---------------------------------------AC-----------AACAACAAC--------------------AA........................................................................................................................	36	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................CCGCAGCAGCAGCCGCAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGAGAGCACAAACAGAGAGCAC-------------T---GTTAACAGCC--------------------------ACAACAA---------------------------------------------------------CAACAACAATAACTAC-----------------AACAATAACAAC------------------AAC------AACAAAC----TACTATAACAACTAGTATT-GCAAGATTAA---AA-----------------------------------------------------------CGAAAAAAAAGA------------AAAGAAAAACAAAAACA-----GAGCA----ACTGCAACAAA-----------CTGCACCAC--------------------AACAAGCA------T-----TTCTCTCTT--CTT--------------------------AATCTCTCTC------TCTCT----------CTCTATC----CCTCTCTCA--CACTCTGTC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

ACAGCAGTCA--GTGACATCGTATGAATCTTTCAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC----------------AGTTAACAACA--------------------------ACAACAA---------------------------------------------------------CAACAACAACTATTAC-----------------AACAACAACAAC------------------AACAACAATAACAAC-------------------------------AACAACCAG-----------------------------------------------------------AACAACAAGAAA---------AA--------------------------CA----AC---TGCAACCTGCAAC---------CTAC--------------------AGCAAGAA-----------------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCACAGTGTTTACAACCTACAGCA-----------------------------------AACAGCAA-------CCAAACTACCGTT--AACAGAGCACAGTTTTGTTGGCAGTAAACGGCCAACAGCAAACAGCAAAACTACCGTTAACAGCC---------------------------------------------------AGAACCACATGAACAACA-ACAAGCAACAACTACAGCAAACAGCAAACAGCAATACTGCAACAACAAATGCACCAACAAATCACAGA-------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------ACAAC--ATGCGTTCTCTCTCTCT----------CT----C----TCTCTCTTA-----CACAGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................GCAAACAGCAAACAGCAATG..........................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	1	0	0	0

droPer2

ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCACAGTGTTTACAACCTACAGCA-----------------------------------AACAGCAA-------CCAAACTACCGTT--AACAGAGCACAGTTTTGTTGGCAGTAAACGGCCAACAGCAAACAGCAAAACTACCGTTAACAGCC---------------------------------------------------AGAACCACATGAACAACA-ACAAGCAACAACTACAGCAAACAG-------CAATACTGCAACAACAAATGCACCAACAAATCACAGA-------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------ACAAC--ATGCGTTCTCTCTCTCT----------CTCTCTC----TCTCTCTTA---------CA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAATCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------AATAACA------------------------------------ACA----ACAACAACA-----ACAG-------------------------CAAC-TACAGC-AACAGCAACTATAAT-----------------TACAACAACAAC---------------AACAACAATAAT----------------------------------AGCAACAACAA----------------------------------------------TCCACAAA------AACAACAACAAC------------------------------------------------TACAAA-----------TAGCACAAC--------------------AA------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................................................................................................................................................................C---------------AACAACAATAAT----------------------------------AGCAACA....................................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	1	0	0	0	0
.............................................................................................AACA------------------------------------ACA----ACAACAACA-----ACAG-------------------------CAAC-...........................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................AACAACAAC---------------AACAACAATA...............................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0

droBip1

ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAAACCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------AACAACA---------------------------------ACAACAA----------------------------------------------CAAG-AACAGCAAACTGCAACAACAAC-----------------AGCAACAACAAC------------------------TA--------------TGATTACAACAACAATT-GC------------------------------------------------------------------------AACAACAACAAC------------------------------------------------AACAGA-----------TTGCACTTC--------------------AAAA---------------------------------------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATTCCGGAGG--CAACAAGTGC-----------AACAAGTGCAATTCCCATAATAACA--AT--------A---------------------------------GCAATTGCAACAATAATAATAAT--------------------------------------------------------------ACAATTAGTAACAACAACAAC-----------------AACAACAATAAT------------------AA-----------------------TAGTAGCAATAATA-ACAA-CAACAACAACAAC--------------------------------------------------------AATACGAACAACAA------CAACA---------------------------------------AT-----------ATCCATTAC--------------------AACAATTA------C-----AATAACTAT--TAT---AA-GA---------------AAAAG--TCTCGT------ATGCC----------GCCCATTTG----CCGTTAG--TATTGCATT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------TACAGAA-A---------------------------------AACAACAA-------CTA-----CAACTACAACAA----------------CAAT-AACAGCTAACAGCAATCACTAC-----------------AACAA-----------------------------------------------------CAGCAATAAAT-ACAAGCAACAACAAC-----------------------------------------------------------AGCAACAACAAC---T---------------------------------------------ATTAA------CAAG-CA--ACAA---------------------------------------------------------------------------------------------------------------------------------------------CA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------TACAGTA-----------------------------------AACA-----------------------------------------------------ACAACTAACAGCAACCACTAC-----------------AACAACAACTA-----------------------------------------------CAGCAATAAAT-ACAAGAAACAACCAA-----------------------------------------------------------AGCAACAAAAGC------------AACAAATAACAAAAACA-----AAAA------A-GAAACAAA-----------TTGCACC------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------TACAGTA-----------------------------------AACA-----------------------------------------------------ACAGCTAACAGCAACCACTAC-----------------AACAACAACAAC------------------AAC--------------------------AGCAATAAAT-ACAAGAAACAACTAC-----------------------------------------------------------TGCAACAACAACAAC------------AAATA------ACAAACC-AAAA------A-AAAACAAA-----------TTGCACCTTTAGTCATGAAC------AACAAATAGCA------T-----TTTTTTCAAGTGTA----C-CACACA--------CAGGC---ACCTTCTA------TATACAGTTGAACTTCTCT----AACGTGAT-------------AA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACAGGAGTGATGATGACGACGA------------CGACGACACAATCACAAG-----------CA-AC--AT------------------------TAGCA-CC--------------------------ACAACAACA-GCAACAACC-----ACTGCCACAA-------------------CAGC-AACAGCAA-------CAAAAAA-----------------A----CA----GAAAAACAACAGCAACCACC--------------------ACCACAACAGCACCAACA-ACACACAGCAGCAACAGCA-ACAG-------CAA------------------------------------C---AGCAAC---ATCAACTTTAACAGCA-------------ACA-----ATAA------C-TATATAAA-----------TAA----------------------------CAATAA------T-----ATTAAC-GC--CGACACTG------C--------CAG---AGTCTCTGTC------TCTGC----------CTCT----GCCCCCGCCTTCGC-----CTCC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------TACAGAA-A------AAACCATA-----------------ACAACAA----------------------------------------------CAAT-AACAGCTAACAGCAATCACTAC-----------------AACAACAACAAC------------------AACA------------------AAATAACAGCAATAAAT-ACAAGCAACAACTACAAC--------------------------------------------------------AGCAAGAACAACAA------CAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACAGCAGTCA--GTGACATCGTACGAGTCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------TACAGTA-----------------------------------AACA-----------------------------------------------------ACAGCTAACAGCAACCACAAC-----------------AACAACAACAA---------------------------------------------------AATATATAACAAGCAACAACTACAGCA-ACAA-------CAA--------------------------T-------------AACAATAACAAC------AACAGCAACAAATA-------CCAACC-AACAAAAAA-C-CAAACAAA----------TTTGCACC------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACAGCAGTCA--GTGACATCGTACGAATCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------TACAGTA-----------------------------------AACA-----------------------------------------------------ACAGCTAACAGCAACCACTAC-----------------AACAACTACAAC------------------AACAACAATAGCAACC----AAATATAACAGCAAGCAAT-ACAAGCAACAACAAC-----------------------------------------------------------AGCAA-AACAACAACCTAAACAGCA-------------ACCAACCA---------AA-TAATCAGA-----------TTGCACCTCTAGTCATGAAAAAAAAAAACAATTCGCA------TATTTTTTTTTACCAGTATA----C-CACG----------------------------------------------------------------------------CA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................................................................................................................................................AACC----AAATATAACAGCAAGCAAT-A.............................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TAAAAAAGTCCAAATCACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ACAAGGTGGGA--GCACA-AC--AG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AGGTGGGA--GCACA-AC--AGAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................GGA--GCACA-AC--AGAGCAC-------------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................AGCAAT-ACAAGCAACAACAAC-----------------------------------------------------------AGCAA-AA............................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................................................................................................................................................................................................................................................................................................A-AACAACAACCTAAACAGCC-------------C.............................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GGTGGGA--GCACA-AC--AGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................AACAACAACCTAAACAGCG-------------C.............................................................................................................................................................................................	20	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTCATGAAAAAAAAAAAA..........................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................AACAACAACCTAAACAGCG-------------G.............................................................................................................................................................................................	20	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ACAGCAGTCA--GTGACATCGTACGAATCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------TACAGTA-----------------------------------AACA-----------------------------------------------------ACAGCTAACAGCAACCACTAC-----------------AACAACTACAAC------------------AAC---AATAGCAACC----AATTATAACAGCAAGCAAT-ACAAGCAACAACAAC-----------------------------------------------------------AGCAAAAACAACAACCTAAACAGCA-------------ACCAACCA---------AA-TAATCAGA-----------TTGCACCTCTAGTCATGAAA------AACAAATTGCA------TA--TTTTTTTACCAGTATA----C-CACG----------------------------------------------------------------------------CA

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

ACAGCAGTCA--GTGACATCGTACGAATCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------TACAGTA-----------------------------------AACA-----------------------------------------------------ACAGCTAACAGCAACCACTAC-----------------AACAACAACAA---------------------------TAGCAACC----AAATATAACAGCAAGCAAT-ACAAGCAACAACAAC-----------------------------------------------------------AGCAAAAACAACAACCTAAACAGCA-------------ACCAACCA---------AA-TAATCAGA-----------TTGCACCTCTAGTCATGAAA------AACAAATTGCA------TA--TTTTTTTACCAGTATA----C-CACG----------------------------------------------------------------------------CA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

ACAGCAGTCA--GTGACATCGTACGAATCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCACAA----------CTACAGTA-----------------------------------AACAA----------------------------------------------CAAC-TACAGCTAACAGCAACCACTAC-----------------AACAACAATAAC------------------AACAACAATAACAACCACCAAAATATAACAGCAAGCAAT-ACAAGCAACAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................TCACAAGGTGGGA--GCACA-AC--AGAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.................ATCGTACGAATCCCTAAAAAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

ACAGCAGTCA--GTGACATCGTACGAATCCCTAAAAAAGTCCAAATCACAAGGTGGGA--GCACA-AC--AGAGCAC-------------TACAGTA-----------------------------------AACA-----------------------------------------------------ACAGCTAACAGCAACCACTAC-----------------AACAACTACAAC------------------AAC------------C----CAATATAACAGCAAGCAAT-ACAAGCAACAACAAC-----------------------------------------------------------AGCAAAAACAAC---CTAAACAGCA-------------ACCAACC-AAAA------A-TAATCAGA-----------CTGCACCTCTAGTCATGAAC------AACAAATTGCA------TAATTTTTTTTACCAGTGTA----C-CACGCA--CACACACAAAC---ACACTTTA------AATGCAGTTGAACTTCTCT----ATCGCGACCAACGA-----GTGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................TAC-----------------AACAACTACAAC------------------AAC------------C----C.................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................TAC-----------------AACAACTACAAC------------------AAC------------C----..................................................................................................................................................................................................................................................................................................................................	19	11	0.09	1	0	1	0	0	0	0	0

dmo_478

scaffold_6328:924848-924998 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads