ID:

dmo_477

 Coordinate:

scaffold_6328:916957-917107 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.9 -26.6 -26.5

Flybase annnotation

exon [dmoj_GLEANR_16950:1]; CDS [Dmoj\GI16225-cds]; intron [Dmoj\GI16225-in]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+
mature
  1. scaffold_6308:1471269-1471289 +
  2. dmo_477  scaffold_6328:917071-917091 -
  3. scaffold_6473:5771871-5771891 +
  4. scaffold_6473:7409864-7409884 +
  5. scaffold_6473:8070568-8070588 -
  6. scaffold_6473:8690310-8690330 -
  7. scaffold_6473:8835567-8835587 +
  8. scaffold_6473:9897952-9897972 +
  9. scaffold_6473:10399764-10399784 -
  10. scaffold_6496:2034802-2034822 +
  11. scaffold_6496:6141269-6141289 -
  12. scaffold_6496:7416888-7416908 -
  13. dmo_1041  scaffold_6496:8442466-8442486 +
  14. scaffold_6496:12320827-12320847 -
  15. scaffold_6500:5374396-5374416 +
  16. scaffold_6500:6906636-6906656 -
  17. scaffold_6500:7167310-7167330 +
  18. scaffold_6500:7255764-7255784 +
  19. scaffold_6500:11408434-11408454 -
  20. scaffold_6540:17721186-17721206 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCGTTCCCAGATCATAATCGGCGGCAAATATCGGGTGATACGCAAGATCGGTAAGTCGCCACATAGATGTATGTATGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCTCTATTATAAATACATATTCATTCAGGAATTTTGTTTAAGCCCAAACTCTTTTAGGTCCATTCATAGCTCAGGCCCATAACTGT
**************************************************......(((((((((.((((((((((....)))))))))).)))))).)))............................................((.(((.((((((((.((((.......)))).)))))))).))).)).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V041
embryo
 V049
head
................................GGGTGATACGCAAGATCG......................................................................................................................................................................................................... 18 0 1 2.00 2 1 0 1 0
.............................ATCGGGTGATACGCAAGATCGGCA...................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0
...............................CGGGTGATACGCAAGATCG......................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1
...........................................................................................................................................................................................ATTCAGGAATTTTGTTTAAGCCC......................................... 23 0 1 1.00 1 0 1 0 0
.................................GGTGATACGCAAGATCGGC....................................................................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0
...............AATCGGCGGCAAATATCGG......................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
.........................AAATATCGGGTGATACGCAAG............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................ATCATTCGGGAATTTTGTT................................................ 19 2 3 0.33 1 1 0 0 0
..................................................................ATGTATGTATGTGTGTATGTG.................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0

Anti-sense strand reads

AGCAAGGGTCTAGTATTAGCCGCCGTTTATAGCCCACTATGCGTTCTAGCCATTCAGCGGTGTATCTACATACATACACACATACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATAGAGATAATATTTATGTATAAGTAAGTCCTTAAAACAAATTCGGGTTTGAGAAAATCCAGGTAAGTATCGAGTCCGGGTATTGACA
**************************************************......(((((((((.((((((((((....)))))))))).)))))).)))............................................((.(((.((((((((.((((.......)))).)))))))).))).)).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
................................CCCACTGTATGTTCTAGC......................................................................................................................................................................................................... 18 3 15 0.07 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6328:916907-917157 - dmo_477 TCGT--------------------------------------------------------------------------------------TCCCAGATCATAATCGGCGGCAAATATCGGGTG-------------------------------------------------------------------ATACGC--AAGATCGGTAAGTCGCCACA---------------TAGATGT-----------------------A----------------------------TGTATGTGTGTATGTGTGT------------------------GT----GTG---------------TGTGTGTGT--GTG------------TGTGT--GTG--------------T--GTGTGTGTGTG----TG--T----GT----GTGTGTG--------T----GTGT---------------------------------GTGTGTGTGT----GTGTG--T--------------------------------GTG--------------TATCT------CTATTATAAA--TACATA----------------------------------------------TTCATTCAGGAAT----------------------TTTGT-------------------T-T--AAGCCCAAACTCTTTTAGGTC------CATTCATAGCTCAGGCCCAT--AACTG--T------------------------------------------------------------------------
droVir3 scaffold_12875:18976136-18976343 + TGTA--------------------------------------------------------------------------------------TG------------------------------------------------------------------------TATGTTTGTAA---TATTGTCTGTAAGTATACAAGAATTTTGTACGAAGGCAAA---------------TAAGTAT-----------------------ATATATA----------TGT------------G----AGTGTGTGTGTGTGT--------------------TTG-------------------------TGTGTGCGTATGT----------AGGT--GTG--------------T------GTGTGTG----G--------GC----------GTGTGTGTGTTAGTG--T---------------------AT----------G--CATGTAT----GTATG--T------------------------------ATGCA----------------TTT------A-----------------------------------------------------------------------TATATATATATATATGCATGCATGCTTGTTTT-------------------C-T--AATACCA----------------------------------------------A--A------------------------------------------------------------------------
droGri2 scaffold_15245:11278286-11278474 + TGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGT----GTGTGTG--------------------TGTGTGTGTGTG-------------------TGTGT--GTG------------TGTGT--GTG--------------T--GTGTGTGTGTG----TG--TGTGTGT--------GTG--------T----GTGT---------------------------------GTGTGTATG----TGTATGTGT--------------------------------------GTGTTGGTAAGTGTGT------GTATGA---GCG---------TATGCTGTGTGCATGTGCGTTATTTAAACTGTAAATATTG-TA--------CGACCACACGAGTGTACATGCG------------------------------------------------------------------------------TGC--AACTA--T------------------------------------------------------------------------
droWil2 scf2_1100000004401:342436-342612 + TGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGT----GTGTGTG--------------------TGTGTGTGTGTG-------------------TGTGT--GTG------------TGTGT--GTG--------------T--GTGTGTGTGTG----TG--TGTGTGT------------------------GTGT---------------------------------GTGTGTGTGTCTGTCTGTGTTG--------------------------------------GTTTTGTT-------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------TG-------------TTTTTTTAAATATTGATATTCCGATTCCGTTTGAAATATTTTTGCATCAATTTACTATCCGATAACAATGATAAT
dp5 XL_group1a:2879860-2880041 - CAAA--------------------------------------------------------------------------------------------------AACGATGGAA----------------------------ATTAACAAATAAATATGCAAAAAATATATCCATGATAT-------------------------------------------------------------------------------------------------------GC------------A----AGTGTGCGCGTGTGG--------------------TTGCATCTG-------------------TGTGT--GTG----------------TGTGTG--------------TTTGTGTGT----GTGCGTG--TTTCAGT------------------------GTGT---------------------------------GTGTGTGCTTGTATCTG----T--------------------------------GAGGTAC-A-------------------AAATTATGAA--TGCATT----------------------------------------------TTCCATTATACATG--------------TTTT-------------------------------------------------------------------------------------T--T------------------------------------------------------------------------
droPer2 scaffold_12:383678-383849 + TTAA---------------------------------------------------------------------------------------------------------------------------------------------CAAATAAATATGCAAAAAATATATCCATGATAT-------------------------------------------------------------------------------------------------------GC------------A----AGTGTGCGCGTGTGG--------------------TTGCATCTG-------------------TGTGT--GTG----------------TGTGTG--------------TGTGTGTGT----GTGCGTG--TTTCAGT------------------------ATGT---------------------------------GTGTGTGTTTGTATCTG----T--------------------------------GAGGTAC-A-------------------AAATTATGAA--TGCATT----------------------------------------------TTCCATTATACATG--------------TTTTTT---------------------------------------------------------------------TG-------------TTC------------------------------------------------------------------------
droAna3 scaffold_13337:2680441-2680598 + ATCC------------------------------------------------------------------------------------------------------AGGGTGAATCCAGGGTGATTCCGGGGCGATTGGTACTGCTGGGTAGATAC--------AGTATCTGGAG-------------------------------------------------------------------T----------------------------------------------------GTGTGTGTGTGTGTG------------------------TGT----GT---------------GTGTGTGTGT--GTG------------TGTGT--GTG--------------T--GTGTGTGTGCG----TG--T----GT----GTGTGCG--------T----GTGT---------------------------------GTGTGCGTG----TGTGTGTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------TGT------------------------------------------------------------------------
droBip1 scf7180000395836:248-461 + TATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAA-------------------------------------------------------------------T----------------------------------------------------GCGTAC--------ACA----------------TGT--ATGT--ATAT---------------GTATGTATAT--GTT------------AGTGT--GCG--------------A--ATAAACTTGCA----TG--C----AT----GCATGTG--------T----ACAT---------------------------------GTACATGCG----AGTATGTATGTATTCTCCCTTTTTCACATACGTGTACATATGTAGTA--------------------------------CA---------CGGATTATATGTACATACATTCTTTA--------------------------AT-TA--------------ACTAA------------------------------TTAACACTTATTTCTTTTAATC-----------AGAGCTC--GCAAAT--AACAG--T------------------------------------------------------------------------
droKik1 scf7180000302544:1238666-1238834 + AAGA--------------------------------------------------------------------------------------TCG--------------GGGAA----------------------------A---------------------------------------------------------------------------------------------------TT----------------ATTTA-TCAAATAAACACAGT----------------TTGCGTGCTTCGGTG------------------------TGA--GTGT-GTTTTCTTTGT--------ATT----ATG------------AGTGT--GTG--------------T--GTGTGTGT----------------GT----GTGTGTG--------T----GTGT---------------------------------GTGTCTGTGT----GTTTG--T--------------------------------CTT--------------TATCC------TTGCTA---AAA---------TACAT----------------------------------------CAAACAGGAAT----------------------GG---------------------------------------------------------------------TGGGTAAAACTC--T------------------------------------------------------------------------
droFic1 scf7180000454072:1099650-1099796 - GCAA-----------------------------------------------------------------------------------------------A----------------------------------------------CATTACGTATA-------------CGTAA-------------------------------------------------------------------TACGTATACGTAATATACCTT-AACGTT--TGATTGT----------------TCGTGGGGATCAGTA------------------------TTT--GTGT-----------------------GT--CTCTCTA--------TGTCTGTGTG--------------C--CTGTGTGTTTG----TG--T----GT----TTGTATG--------T----GTGT---------------------------------GT--GTAGG----GATAAG--T---------------------------------------------------------------------------ATC----------------------------------------------------------------------------------------------------------------------------------------------------------------CACT--A------------------------------------------------------------------------
droEle1 scf7180000491006:51444-51603 - AGGTCATAAGCAGCTAAGAACGGAAAGGGG--ATGACTCCACACAAGAAAGA--------------------------------------CAA--------------------------------------------------------T-----------GCGTCTGTACGGGATTT-------------------------------------------------------------------------------------------------------GT------------G----TGTGTGTGTGTGTGT--------------------GTGTGTGTG-------------------TGTGT--GTG------------TGTGT--GTG--------------T--GTGTGT----GTGTGTG--TGTGTGT------------------------GTGT---------------------------------GTGTGTGTGTGTGTGTG----T--------------------------------GCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777040:5029-5211 - TGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGT----GTGTGTG--------------------TGTGTGTGTGTG-------------------TGTGT--GTG------------TGTGT--GTG--------------T--GTGTGTGTGTG----TG--TGTGTGT--------GTG--------T----GTGT---------------------------------GTGTGTGTG----TGTGTGTGT--------------------------------------GTGTTGGG-------------------TTGGG--G--GTAGTATATAC-ATATATCTCTGCGATAATTAAGCACAC-ATTATG-AA-----------------------------------------------------------------------CGCTCATCTGGGCCCCTCAT--------------TCACAT--GTATT--C------------------------------------------------------------------------
droBia1 scf7180000301760:1516039-1516198 - CCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------TGTCTGTGTGGATGCACGTGCGC--------------------CCATCTCAG-------------------CGTGT--GTG----------------TGTGTG--------------TGTGTGTGT----GTGTGTG--T----GT----GT--------------------GT--------GTGTGTGTGTGCT------------GT--GAGCGA----GTGTG--T------------------------------GTGCACTACATTTGTT-TC-----AAACAA---------TTA---------TGTGCCGA--------------------------------------------------------------------------------------------------GTGGCACACACTCCTCTGGATC--------------------------------C--A------------------------------------------------------------------------
droTak1 scf7180000415871:1016325-1016504 - GGCA-----------------------------------------------------------------------------------------------AT----------TAATATCTTG------------------------------------------------------------------TGGATACGCTTTAAATCGTTACAAGGACAAA---------------CTGACAT-----------------------A----------------------------CATCTACATGTACACGTGTATGGCCATGTGTGTGCGTGAACGTGT--GGGT-GTTGCCTGTGA----------------------------------------------------------TGTGT--TAG----C----------------------------------G--AGTGTGTGTGTGTGTGTGCACT------------TT--GAGTA---------------------------------------------------------------------------------------CAAT----------------------------------------------T-----TACATATGTTTAT------------TTA---------------------------------------------------------------------CG-------------TAT------------------------------------------------------------------------
droEug1 scf7180000409538:119107-119292 + CAGTGGCAAGG------------------G------------------------------------------------------------------------------------------GTG-----------GCAG--G------------CCT----------------------------------------AAAAAGGCGCCACAGGTGTAAA----------------------AT----------------GCTTA-TAAATCTGCT--------------------------AAACTCTCTGTCTGT--------------------C-----------------------T--GTGTGTGTGTGTGTGTGTGTGTGTGCTT--GTG--------------T--GTGTGTGTGCT----T----------------------------------GTGT---------------------GTGTGTGCCTGTGAATGAGAA----TAA------------------------------------------------------------------ATGTTATTGT--TGAACA----------------------------------------------TTGCTTAATGAAC-------------------------------------------------------------T---------------------------------------TTTT--T------------------------------------------------------------------------
dm3 chrUextra:23520703-23520903 + TCTC------------------------------------------------------------------------------------------------------C---------------------------------------GTATATATGTA-----------------T---ATATGTATATATGTATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTATAT--ATG------------TATAT--ATG--------------T--ATATATGTATA----TA--T----GT----ATATATG--------T----ATAT---------------------------------ATGTATATA----TGTATATATGTATATATGTATATATGTATATATGTATATATGTA-TA---------TATGTA---------------------------------TATATGTATATATGTACCTATGC------------CTA--------TATGTATATATGTATATATGTA------------------------------------------------------------------------------TAT--ATGTA--T------------------------------------------------------------------------
droSim2 2l:9507891-9508046 - ATCA-----------------------------------------------------------------------------------------------A---------------------------------------------TAAATAAATAC---------------AT-ATTT-------------------------------------------------------------------GCATATGTGTTGT-----------------------------------------------CCCAA--------------------------------TA-----TG----T--CT--GTGTGTGCGTCTGC----------GTGC--GTG--------------------TGT----------G--TGTGTGTGTGTGTGTGCG--------T----GTAT---------------------ATGT--------GTGA----------GTG-------------------------------------------T-G-------------------AAAGCCTGAA--C--ATT----------------------------------------------TTTACTTTTGTTTG--------------TTCTTT---------------------------------------------------------------------TGACATTT--TATTT--A------------------------------------------------------------------------
droSec2 scaffold_4:2321262-2321429 - GCGCCCCCAGC------------------GTCATAAAT------ACGCAACAAACGTAAAATTAAACAAAAACATAACAAATTAATAGATTCA--------------------------------------------------------T----------------------------------------------------------------------------------------GT-----------------------G----------------------------TGTGTGTGT--------GTG----------------TGTGTGTGT----GTG---------------TGTGTGTGT--GTG------------TGTGT--GTG--------------T--GTGTGTGTGTG----TG--T----GT----GTGTGTG--------T----GTGT---------------------------------GTGTGTGTG----TGTGTGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------TGT------------------------------------------------------------------------
droYak3 X:18902456-18902675 - GGCC-----------------------------------------------------------------------------------------------ATAAACG-TGGCA----------------------------A---------------------------------------CTGTCGTTAAATATACATGAGGGCGCCAGGCGAACGCATAAATTGCCATTTAATGAG-----T----------------------------------------------------GCGTAT--------ATG----------------CGT----GTG----TG-----------TGTGTGTGTGTGT--G--------------TAAGT--GTG--------------A----GTGT----------A------------------------------------A---------------------------------------------------GTGA--------------------------------------GTGTTGGTATGGGTGC------CTGTGG---GTG---------TGCAACATGT----------------------------------------ACGAGT--------------ATACAATCGGACTCCATTACCGGGAAATTCGCT-TTGTGGCCCGAAGTCTTTTA---------------------------------------G------------------------------------------------------------------------
droEre2 scaffold_4770:6674194-6674411 - TCAA--------------------------------------------------------------------------------------TCCGA------AAACT-CTACA----------------------------A------------TTTACCATAAATAT---------------------------------------------------------------------------------------------------------TTACATTTTGTGGGCATGTATGTATGT------------------------------------ATG-------------------------TATGTACGTATGT----------ATGT--ATGTATGTACCTATGTAT--GTATGT----------ACATATGTAT----GT--------------------AT---------------------------------------GTA----TGTATGTATG--------------------TAT--------GT----------ACATATGTAT------GTACAT---ATG---------TATGCTGTGTA--------------------------------ATCATTCA---AT----------------------TTTGT-------------------CTCTAAAATGTAAATTTTTTTGG------------------------CAATTGAAAGAT--T------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TCGT--------------------------------------------------------------------------------------TCCCAGATCATAATCGGCGGCAAATATCGGGTG-------------------------------------------------------------------ATACGC--AAGATCGGTAAGTCGCCACA---------------TAGATGT-----------------------A----------------------------TGTATGTGTGTATGTGTGT------------------------GT----GTG---------------TGTGTGTGT--GTG------------TGTGT--GTG--------------T--GTGTGTGTGTG----TG--T----GT----GTGTGTG--------T----GTGT---------------------------------GTGTGTGTGT----GTGTG--T--------------------------------GTG--------------TATCT------CTATTATAAA--TACATA----------------------------------------------TTCATTCAGGAAT----------------------TTTGT-------------------T-T--AAGCCCAAACTCTTTTAGGTC------CATTCATAGCTCAGGCCCAT--AACTG--T------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................GGGTG-------------------------------------------------------------------ATACGC--AAGATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002110000
.....................................................................................................................CGGGTG-------------------------------------------------------------------ATACGC--AAGATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGGAAT----------------------TTTGT-------------------T-T--AAGCCC...........................................................................................................................2311.001000001
.......................................................................................................................GGTG-------------------------------------------------------------------ATACGC--AAGATCGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.....................................................................................................AATCGGCGGCAAATATCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...............................................................................................................AAATATCGGGTG-------------------------------------------------------------------ATACGC--AAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
............................................................................................................................................................................................................................................ATGT-----------------------A----------------------------TGTATGTGTGTATGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
droVir3
TGTA--------------------------------------------------------------------------------------TG------------------------------------------------------------------------TATGTTTGTAA---TATTGTCTGTAAGTATACAAGAATTTTGTACGAAGGCAAA---------------TAAGTAT-----------------------ATATATA----------TGT------------G----AGTGTGTGTGTGTGT--------------------TTG-------------------------TGTGTGCGTATGT----------AGGT--GTG--------------T------GTGTGTG----G--------GC----------GTGTGTGTGTTAGTG--T---------------------AT----------G--CATGTAT----GTATG--T------------------------------ATGCA----------------TTT------A-----------------------------------------------------------------------TATATATATATATATGCATGCATGCTTGTTTT-------------------C-T--AATACCA----------------------------------------------A--A------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................TATGT----------AGGT--GTG--------------T------GTGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................1990.111000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................................TATGT----------AGGT--GTG--------------T------GTGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102000002000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................TATGT----------AGGT--GTG--------------T------GTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................18100.101000000010000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................T------------G----AGTGTGTGTGTGTGT--------------------TT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----------G--CATGTAT----GTATG--T------------------------------AT.............................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................AGTGTGTGTGTGTGT--------------------TTG-------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................TA----------TGT------------G----AGTGTGTGTGTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000100
..................................................................................................................................................................................................................................................................................................................TGTGTGTGT--------------------TTG-------------------------TGTGTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000001000000000000000000000000000000000000000000000000000000
droGri2
TGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGT----GTGTGTG--------------------TGTGTGTGTGTG-------------------TGTGT--GTG------------TGTGT--GTG--------------T--GTGTGTGTGTG----TG--TGTGTGT--------GTG--------T----GTGT---------------------------------GTGTGTATG----TGTATGTGT--------------------------------------GTGTTGGTAAGTGTGT------GTATGA---GCG---------TATGCTGTGTGCATGTGCGTTATTTAAACTGTAAATATTG-TA--------CGACCACACGAGTGTACATGCG------------------------------------------------------------------------------TGC--AACTA--T------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGT----GTGTGTG--------------------TGTGTGTGTGTG-------------------TGTGT--GTG------------TGTGT--GTG--------------T--GTGTGTGTGTG----TG--TGTGTGT------------------------GTGT---------------------------------GTGTGTGTGTCTGTCTGTGTTG--------------------------------------GTTTTGTT-------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------TG-------------TTTTTTTAAATATTGATATTCCGATTCCGTTTGAAATATTTTTGCATCAATTTACTATCCGATAACAATGATAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
CAAA--------------------------------------------------------------------------------------------------AACGATGGAA----------------------------ATTAACAAATAAATATGCAAAAAATATATCCATGATAT-------------------------------------------------------------------------------------------------------GC------------A----AGTGTGCGCGTGTGG--------------------TTGCATCTG-------------------TGTGT--GTG----------------TGTGTG--------------TTTGTGTGT----GTGCGTG--TTTCAGT------------------------GTGT---------------------------------GTGTGTGCTTGTATCTG----T--------------------------------GAGGTAC-A-------------------AAATTATGAA--TGCATT----------------------------------------------TTCCATTATACATG--------------TTTT-------------------------------------------------------------------------------------T--T------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................TG----------------TGTGTG--------------TTTGTGTGT----GTGC............................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
droPer2
TTAA---------------------------------------------------------------------------------------------------------------------------------------------CAAATAAATATGCAAAAAATATATCCATGATAT-------------------------------------------------------------------------------------------------------GC------------A----AGTGTGCGCGTGTGG--------------------TTGCATCTG-------------------TGTGT--GTG----------------TGTGTG--------------TGTGTGTGT----GTGCGTG--TTTCAGT------------------------ATGT---------------------------------GTGTGTGTTTGTATCTG----T--------------------------------GAGGTAC-A-------------------AAATTATGAA--TGCATT----------------------------------------------TTCCATTATACATG--------------TTTTTT---------------------------------------------------------------------TG-------------TTC------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................TGTG--------------TGTGTGTGT----GTGCGTG--TT.....................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
.........................................................................................................................................................................................................................................................................................................................................................................................................TG--------------TGTGTGTGT----GTGCGTG--.......................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................GTGTG--------------TGTGTGTGT----GTGCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
droAna3
ATCC------------------------------------------------------------------------------------------------------AGGGTGAATCCAGGGTGATTCCGGGGCGATTGGTACTGCTGGGTAGATAC--------AGTATCTGGAG-------------------------------------------------------------------T----------------------------------------------------GTGTGTGTGTGTGTG------------------------TGT----GT---------------GTGTGTGTGT--GTG------------TGTGT--GTG--------------T--GTGTGTGTGCG----TG--T----GT----GTGTGCG--------T----GTGT---------------------------------GTGTGCGTG----TGTGTGTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------TGT------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTG------------------------TGT----GT---------------GTGTGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.408000008
..............................................................................................................................................................................................................................................................................................................................................................................GT--GTG------------TGTGT--GTG--------------T--GTGTGTGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................24200.306000006
..............................................................................................................................................................................................................................................................................................................................................................................GT--GTG------------TGTGT--GTG--------------T--GTGTGTGTGCG----...........................................................................................................................................................................................................................................................................................................................................................................................................................25200.255000005
..........................................................................................................................................................................................................................................................................................................................................................................................................G--------------T--GTGTGTGTGCG----TG--T----GT----............................................................................................................................................................................................................................................................................................................................................................................................................18200.153000003
.............................................................................................................................TCCGGGGCGATTGGTACTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102020000
............................................................................................................................TTCCGGGGCGATTGGTACTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102101000
............................................................................................................................TTCCGGGGCGATTGGTACTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102101000
..................................................................................................................................................................................................................................................................................................................................................................................GTG------------TGTGT--GTG--------------T--GTGTGTGTGCG----T..........................................................................................................................................................................................................................................................................................................................................................................................................................24200.102100001
.............................................................................................................................................................................................................................................................................................................................................................................TGT--GTG------------TGTGT--GTG--------------T--GTGTGTGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102000002
..................................................................................................................................................................................................................................................................................................................................................................................GTG------------TGTGT--GTG--------------T--GTGTGTGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000002
.....................................................................................................................................................................................................................................................................................................................................................................................................T--GTG--------------T--GTGTGTGTGCG----TG--T----GT----G...........................................................................................................................................................................................................................................................................................................................................................................................................22140.071000001
...................................................................................................................................................................................................................................................................................................................................................................................................TGT--GTG--------------T--GTGTGTGTGCG----T..........................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGCG----TG--T----GT----GTGT........................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
....................................................................................................................CAGGGTGATTCCGGGGCGATTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT---------------------------------GTGTGCGTG----TGTGTGTG..............................................................................................................................................................................................................................................................................................................................21200.051000010
..........................................................................................................................................................................................................................................................................................................TGTGTGTGTGTG------------------------TGT----GT---------------GTGTGTGTGT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................T--GTG------------TGTGT--GTG--------------T--GTGTGTGTGCG----TG--.......................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000001
.........................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTG------------------------TGT----GT---------------GTGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
...................................................................................................................................................................................................................................................................................................................................................................................TG------------TGTGT--GTG--------------T--GTGTGTGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
..................................................................................................................TCCAGGGTGATTCCGGGGCGATTGGTAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
................................................................................................................................................................................................................................................................................................................TGTGTG------------------------TGT----GT---------------GTGTGTGTGT--GT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000001
.................................................................................................................................................................................................................................................................................................................................................................................................TGTGT--GTG--------------T--GTGTGTGTGCG----...........................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................G--T----GT----GTGTGCG--------T----GTGT---------------------------------GTGTG..............................................................................................................................................................................................................................................................................................................................................21200.051000010
............................................................................................................................TTCCGGGGCGATTGGTACTGCTGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
............................................................................................................................TTCCGGGGCGATTGGTACTGCTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
................................................................................................................................GGGGCGATTGGTACTGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
............................................................................................................................................................................GAG-------------------------------------------------------------------T----------------------------------------------------GTGTGTGTGTGTGTG------------------------TGT----GT---------------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000001
..................................................................................................................................................................................................................................................................................................................................................................................................GTGT--GTG--------------T--GTGTGTGTGCG----...........................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
..........................................................................................................................GATTCCGGGGCGATTGGTACTGCTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
................................................................................................................AATCCAGGGTGATTCCGGGGCGATTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
......................................................................................................................GGGTGATTCCGGGGCGATTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.............................................................................................................................................................................AG-------------------------------------------------------------------T----------------------------------------------------GTGTGTGTGTGTGTG------------------------TGT----G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
..................................................................................................................TCCAGGGTGATTCCGGGGCGATTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
..................................................................................................................................................................................................................................................................................................................TGTG------------------------TGT----GT---------------GTGTGTGTGT--GTG------------T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000001
............................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGCG----TG--T----GT----GTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
droBip1
TATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAA-------------------------------------------------------------------T----------------------------------------------------GCGTAC--------ACA----------------TGT--ATGT--ATAT---------------GTATGTATAT--GTT------------AGTGT--GCG--------------A--ATAAACTTGCA----TG--C----AT----GCATGTG--------T----ACAT---------------------------------GTACATGCG----AGTATGTATGTATTCTCCCTTTTTCACATACGTGTACATATGTAGTA--------------------------------CA---------CGGATTATATGTACATACATTCTTTA--------------------------AT-TA--------------ACTAA------------------------------TTAACACTTATTTCTTTTAATC-----------AGAGCTC--GCAAAT--AACAG--T------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAGA--------------------------------------------------------------------------------------TCG--------------GGGAA----------------------------A---------------------------------------------------------------------------------------------------TT----------------ATTTA-TCAAATAAACACAGT----------------TTGCGTGCTTCGGTG------------------------TGA--GTGT-GTTTTCTTTGT--------ATT----ATG------------AGTGT--GTG--------------T--GTGTGTGT----------------GT----GTGTGTG--------T----GTGT---------------------------------GTGTCTGTGT----GTTTG--T--------------------------------CTT--------------TATCC------TTGCTA---AAA---------TACAT----------------------------------------CAAACAGGAAT----------------------GG---------------------------------------------------------------------TGGGTAAAACTC--T------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCAA-----------------------------------------------------------------------------------------------A----------------------------------------------CATTACGTATA-------------CGTAA-------------------------------------------------------------------TACGTATACGTAATATACCTT-AACGTT--TGATTGT----------------TCGTGGGGATCAGTA------------------------TTT--GTGT-----------------------GT--CTCTCTA--------TGTCTGTGTG--------------C--CTGTGTGTTTG----TG--T----GT----TTGTATG--------T----GTGT---------------------------------GT--GTAGG----GATAAG--T---------------------------------------------------------------------------ATC----------------------------------------------------------------------------------------------------------------------------------------------------------------CACT--A------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGGTCATAAGCAGCTAAGAACGGAAAGGGG--ATGACTCCACACAAGAAAGA--------------------------------------CAA--------------------------------------------------------T-----------GCGTCTGTACGGGATTT-------------------------------------------------------------------------------------------------------GT------------G----TGTGTGTGTGTGTGT--------------------GTGTGTGTG-------------------TGTGT--GTG------------TGTGT--GTG--------------T--GTGTGT----GTGTGTG--TGTGTGT------------------------GTGT---------------------------------GTGTGTGTGTGTGTGTG----T--------------------------------GCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGT----GTGTGTG--------------------TGTGTGTGTGTG-------------------TGTGT--GTG------------TGTGT--GTG--------------T--GTGTGTGTGTG----TG--TGTGTGT--------GTG--------T----GTGT---------------------------------GTGTGTGTG----TGTGTGTGT--------------------------------------GTGTTGGG-------------------TTGGG--G--GTAGTATATAC-ATATATCTCTGCGATAATTAAGCACAC-ATTATG-AA-----------------------------------------------------------------------CGCTCATCTGGGCCCCTCAT--------------TCACAT--GTATT--C------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------TGTCTGTGTGGATGCACGTGCGC--------------------CCATCTCAG-------------------CGTGT--GTG----------------TGTGTG--------------TGTGTGTGT----GTGTGTG--T----GT----GT--------------------GT--------GTGTGTGTGTGCT------------GT--GAGCGA----GTGTG--T------------------------------GTGCACTACATTTGTT-TC-----AAACAA---------TTA---------TGTGCCGA--------------------------------------------------------------------------------------------------GTGGCACACACTCCTCTGGATC--------------------------------C--A------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GGCA-----------------------------------------------------------------------------------------------AT----------TAATATCTTG------------------------------------------------------------------TGGATACGCTTTAAATCGTTACAAGGACAAA---------------CTGACAT-----------------------A----------------------------CATCTACATGTACACGTGTATGGCCATGTGTGTGCGTGAACGTGT--GGGT-GTTGCCTGTGA----------------------------------------------------------TGTGT--TAG----C----------------------------------G--AGTGTGTGTGTGTGTGTGCACT------------TT--GAGTA---------------------------------------------------------------------------------------CAAT----------------------------------------------T-----TACATATGTTTAT------------TTA---------------------------------------------------------------------CG-------------TAT------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CAGTGGCAAGG------------------G------------------------------------------------------------------------------------------GTG-----------GCAG--G------------CCT----------------------------------------AAAAAGGCGCCACAGGTGTAAA----------------------AT----------------GCTTA-TAAATCTGCT--------------------------AAACTCTCTGTCTGT--------------------C-----------------------T--GTGTGTGTGTGTGTGTGTGTGTGTGCTT--GTG--------------T--GTGTGTGTGCT----T----------------------------------GTGT---------------------GTGTGTGCCTGTGAATGAGAA----TAA------------------------------------------------------------------ATGTTATTGT--TGAACA----------------------------------------------TTGCTTAATGAAC-------------------------------------------------------------T---------------------------------------TTTT--T------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TCTC------------------------------------------------------------------------------------------------------C---------------------------------------GTATATATGTA-----------------T---ATATGTATATATGTATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTATAT--ATG------------TATAT--ATG--------------T--ATATATGTATA----TA--T----GT----ATATATG--------T----ATAT---------------------------------ATGTATATA----TGTATATATGTATATATGTATATATGTATATATGTATATATGTA-TA---------TATGTA---------------------------------TATATGTATATATGTACCTATGC------------CTA--------TATGTATATATGTATATATGTA------------------------------------------------------------------------------TAT--ATGTA--T------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTATATATGTATATATGT...........................................................................................................................................................................................................................................................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000005000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................T--ATG------------TATAT--ATG--------------T--ATATATGT..................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TATGTATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTATAT--ATG------------TA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATATATGTATATATGTA------------------------------------------------------------------------------.....................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTA--------TATGTATATATGTATA.........................................................................................................................................................................19200.0510000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TATATGTATA----TA--T----GT----ATATA.......................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................T----ATATATG--------T----ATAT---------------------------------ATGTATAT...........................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTATATATGTATAT.......................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------ATGTATATA----TGTATATATGTA..........................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TA----TA--T----GT----ATATATG--------T----ATAT---------------------------------A..................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTATATATGTATATATG....................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATCA-----------------------------------------------------------------------------------------------A---------------------------------------------TAAATAAATAC---------------AT-ATTT-------------------------------------------------------------------GCATATGTGTTGT-----------------------------------------------CCCAA--------------------------------TA-----TG----T--CT--GTGTGTGCGTCTGC----------GTGC--GTG--------------------TGT----------G--TGTGTGTGTGTGTGTGCG--------T----GTAT---------------------ATGT--------GTGA----------GTG-------------------------------------------T-G-------------------AAAGCCTGAA--C--ATT----------------------------------------------TTTACTTTTGTTTG--------------TTCTTT---------------------------------------------------------------------TGACATTT--TATTT--A------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GCGCCCCCAGC------------------GTCATAAAT------ACGCAACAAACGTAAAATTAAACAAAAACATAACAAATTAATAGATTCA--------------------------------------------------------T----------------------------------------------------------------------------------------GT-----------------------G----------------------------TGTGTGTGT--------GTG----------------TGTGTGTGT----GTG---------------TGTGTGTGT--GTG------------TGTGT--GTG--------------T--GTGTGTGTGTG----TG--T----GT----GTGTGTG--------T----GTGT---------------------------------GTGTGTGTG----TGTGTGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------TGT------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................GT-----------------------G----------------------------TGTGTGTGT--------GTG----------------TGTGTGTGT----GTG---------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1020200
....................................................................................................................................................................................................................................................................................................TGTGTGTGT--------GTG----------------TGTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020200
.......................................................................................................................................................................................................................................................................................................................G----------------TGTGTGTGT----GTG---------------TGTGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510001
......................................................................................................................................................................................................................................................................................................TGTGTGT--------GTG----------------TGTGTGTGT----GTG---------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510010
...........................................................................................CA--------------------------------------------------------T----------------------------------------------------------------------------------------GT-----------------------G----------------------------TGTGTGTGT--------GTG----------------TGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100
droYak3
GGCC-----------------------------------------------------------------------------------------------ATAAACG-TGGCA----------------------------A---------------------------------------CTGTCGTTAAATATACATGAGGGCGCCAGGCGAACGCATAAATTGCCATTTAATGAG-----T----------------------------------------------------GCGTAT--------ATG----------------CGT----GTG----TG-----------TGTGTGTGTGTGT--G--------------TAAGT--GTG--------------A----GTGT----------A------------------------------------A---------------------------------------------------GTGA--------------------------------------GTGTTGGTATGGGTGC------CTGTGG---GTG---------TGCAACATGT----------------------------------------ACGAGT--------------ATACAATCGGACTCCATTACCGGGAAATTCGCT-TTGTGGCCCGAAGTCTTTTA---------------------------------------G------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................CCATTTAATGAG-----T----------------------------------------------------GCGTAA--------T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.25101000000000
droEre2
TCAA--------------------------------------------------------------------------------------TCCGA------AAACT-CTACA----------------------------A------------TTTACCATAAATAT---------------------------------------------------------------------------------------------------------TTACATTTTGTGGGCATGTATGTATGT------------------------------------ATG-------------------------TATGTACGTATGT----------ATGT--ATGTATGTACCTATGTAT--GTATGT----------ACATATGTAT----GT--------------------AT---------------------------------------GTA----TGTATGTATG--------------------TAT--------GT----------ACATATGTAT------GTACAT---ATG---------TATGCTGTGTA--------------------------------ATCATTCA---AT----------------------TTTGT-------------------CTCTAAAATGTAAATTTTTTTGG------------------------CAATTGAAAGAT--T------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................ATTTTGTGGGCATGTATGTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.1820000020
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAT------GTACAT---ATG---------TATGCTGTGTA--------------------------------.................................................................................................................................................................................................2660.1710001000
.........................................................................................................................................................................................................................................................................................GTGGGCATGTATGTATGT------------------------------------ATG-------------------------T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22100.1010100000
.....................................................................................................................................................................................................................................................................................TTTTGTGGGCATGTATGTATGT------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.0910000100
.....................................................................................................................................................................................................................................................................................TTTTGTGGGCATGTATGTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.0910000010
......................................................................................................................................................................................................................................................................................TTTGTGGGCATGTATGTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20120.0810000100
......................................................................................................................................................................................................................................................................................TTTGTGGGCATGTATGTATGT------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.0810000100
.......................................................................................................................................................................................................................................................................................TTGTGGGCATGTATGTATGT------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20130.0810000010
..........................................................................................................................................................................................................................................................................................................T------------------------------------ATG-------------------------TATGTACGTATGT----------ATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
..........................................................................................................................................................................................................................................................................................................T------------------------------------ATG-------------------------TATGTACGTATGT----------ATGT--A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000010

Generated: 05/17/2015 at 10:25 PM