dmo_474

exon [dmoj_GLEANR_16954:3]; exon [dmoj_GLEANR_16954:2]; CDS [Dmoj\GI16229-cds]; CDS [Dmoj\GI16229-cds]; intron [Dmoj\GI16229-in]

Name	Class	Family	Strand
TART_DV	LINE	Jockey	-

##################################################---------------------------------------------------------------------------################################################## AGCGACAACTGGAGCATTAACAGCAAAAGGCAGCAACAATAACGGCAGCGGTGGCAGCGGCGGCGGCAGCGGCAGCGCAAATGTGAAACAAACGACAGCAACAACGGCAACTTCGTCGTCGTCAGCAAATCAGTTGCAAACGAAATGCAAACCAGGCCAGAGCGTTGCTGAAGCA ************************************************......((((((((((.((..((........(((..........))).........))..))))))))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M060 embryo	M046 female body	V110 male body	V056 head
.........................................................................................AAACGACAGCAACAACGGCA..................................................................	20	0	1	1.00	1	1	0	0	0
.............................................................................................................................................GAAATGCAAACCAGGCCAGAGCGT..........	24	0	1	1.00	1	0	0	1	0
.......................................................................................................................................GCAAACGAAATGCAAACCAGGCCAGAGC............	28	0	1	1.00	1	1	0	0	0
.....................................................................................................................................TTGCAAACGAAATGCAAACCAGGCC.................	25	0	1	1.00	1	1	0	0	0
....................................................................................................................................................AAACCAGGCCAGAGCGTT.........	18	0	1	1.00	1	0	1	0	0
..........................................................................................................................................AACGAAATGCAAACCAGGCCAGAGCG...........	26	0	1	1.00	1	0	1	0	0
....................................................................................................................................................AAACCAGGCCAGAGCGTTGCTGAAGCA	27	0	1	1.00	1	0	0	1	0
...........................................................................................................................................ACGAAATGCAAACCAGGCC.................	19	0	1	1.00	1	1	0	0	0
..........................................................................................AACGACAGCAACAACGGC...................................................................	18	0	2	0.50	1	1	0	0	0
.............................................CAGCGGTAGCAGCGGCGGCGGG............................................................................................................	22	2	8	0.13	1	0	0	0	1
.............................................................................................................................................................AAGAGCGTCGCTGAAGCA	18	2	8	0.13	1	0	1	0	0
...............................................................CGGCGGCGGCAGGGCAAA..............................................................................................	18	2	18	0.06	1	0	1	0	0
......................................................................................................ATCAGCAACTTCGTCGTC.......................................................	18	2	20	0.05	1	0	1	0	0

TCGCTGTTGACCTCGTAATTGTCGTTTTCCGTCGTTGTTATTGCCGTCGCCACCGTCGCCGCCGCCGTCGCCGTCGCGTTTACACTTTGTTTGCTGTCGTTGTTGCCGTTGAAGCAGCAGCAGTCGTTTAGTCAACGTTTGCTTTACGTTTGGTCCGGTCTCGCAACGACTTCGT ************************************************......((((((((((.((..((........(((..........))).........))..))))))))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V041 embryo	M046 female body	V110 male body
................................................................................................................................TAGTCAACGTTTGCTAAACGTG.........................	22	3	5	0.20	1	1	0	0
.......................................................TCGCCGCCGCCGTCGCCGTCG...................................................................................................	21	0	15	0.07	1	0	1	0
..............................................................................................CGTAGTTGTTACCGTTGAAGC............................................................	21	3	17	0.06	1	0	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6328:829065-829239 -	dmo_474	AGCGACAACT--GGAGCATTAACAGCAAAAGGCAGCAA---C---------------------------------AATAACGGC---AGCGG---------TGGCAGCGGCGG---------------CGGCAGC--------GGCAGCGCAAATGTG--------------------AAACAAACGACAGCAACAACGGCA---------------------------ACTTCGTCGTC---------------GTCAGC-------------------------------------------AAAT----------------------------------------------------------------------------------------------CAGTTGCAAACGAA------------------ATGCAAACCAGGCCAGAG---CGTTGCTG---------------AAGCA
droVir3	scaffold_13042:2785176-2785341 +		AGCGACAACT--GGAGCATTAACAGCAATAGGCAAC---------------------------------------AGCAACAGC---AGCGG------CGTCAGCGGCAG---------------------C-----------GGCAGCGCAAATGTG--------------------AAACAAACGGCAGCAACAGCGGCT---------------------------ACATCGTCGTC---------------GTCAGC-------------------------------------------AAAT----------------------------------------------------------------------------------------------CAGTTGCAAACGAA------------------ATGCAAACCAGGCCAGAG---CGTTGCTG---------------AAGCA
droGri2	scaffold_14853:1356658-1356808 -		AGCGACAGCG--CCGACAACAACAACTGGA-GCATT---------------------------------------AACAGCGAC---AG-----------------------------------------GC-----------GGCGGCGCAAATGTG--------------------AAACAAACGAC---GACTTCGTCG---------------------------TCGTCGTCGTC---------------GTCAGC-------------------------------------------AAAT----------------------------------------------------------------------------------------------CAGTTGCAAACGAA------------------ATGCAAACAGGGCCAGAAGGCCACTGCTG---------------ATGCA
droWil2	scf2_1100000003789:1898-2063 -		AGCAACAATT--GCAGCAACAACAGCAACA-GCAGCAA---CAATGGCAG---------------------------CAACAACAACAGCAA------CAACAACTGCAGCAG---CAA---CAATTGCAGCAACAACAGCAA---------------------------CAGCAGC------------AACAACAGCAGCA---------------------------ACAACAACAGC---------AGCAGCAACAGC-------------------------AGCATCA------------------------------GC------------------------------------------------AAC-------------------------------------------------------------------------------AGCAACAG---------------CAGCA
dp5	3:11298432-11298597 +		AGCTGCAGCA--GCAGCAACAACAGCAGCA-ACATC---------------------------------------AACTGCAGC---AGCAG------CATCAGCAGCAGCAGCAGCAACTG------CAGCAGAAGCAG------------------------------CAACAGCA---------ACAACAGCAGCAGCA---------------------------ACATAAACATC---------------AACAGC-------------------------------------------AACA---ACAGCAGCAGCAAC------------------------------------ATAAACATC---AGC-------------------------------------------------------------------------------AGCAACAG---------------CAGCA
droPer2	scaffold_38:553402-553590 +		AGCAACAACA--ACAGCAACAGCAGCAACA-GCAGC---------------------------------------AGCAACAGCAGCAGCAG------CAACAACAGCAGCAG---------------CAGCAGCAACAGCAG---------------------------CAAGTGTT---------GCAACATCAGCAGCA---------------------------G------------------------------CATACACCGAACACACCGTCGTCGAG---TGT------------GGGA----------------------------------------------------------------------------------------------TCATCGGCAACGAT------------------GA-CCAGCCAGGTAATGT---CGCCGCAGAGTCCGCT-------GGGCA
droAna3	scaffold_13117:4718700-4718865 -		AGCGGCAGCA--GAGACAACTGGAGCATTA-ACGGA---------------------------------------GACAGCAAC---AGCAG------CAGCAGCAGCAGCAG---------------CAACACAAGCG---------------------------GCAGCGACAGCA---------GCGGCAGCAGCAGCA---------------------------ACGTCGTCGTC---------------GTCAGC-------------------------------------------AAAT----------------------------------------------------------------------------------------------CAATTGTTAACGAA------------------ATGCAAACCCGGCCAGAG---CGTTGCTG---------------AAGGC
droBip1	scf7180000396717:238749-238915 -		AGCAGCAACA--GCAACAACAACAGCAACA-ACAGC---------------------------------------AACAACAAC---AGCAA------CATCAGCAGCAGCTT---------------CATCATCACCA---------------------------TCAACAACAACA---------ACAACAGCAGCAACA---T--------TTGACGCCG------GCGGCTGT---------------------------------------------------------------------GA-------------------CAAATGTGAATGGAAATAT-----------------------------------------------------------------------------------------TGCAGCACAGGC--------------AG------CAGTAGCTGCAGCC
droKik1	scf7180000302351:235700-235886 +		AGCAACAACA--GATGCAGCAGCAGCATCA-GCTGC---------------------------------------ACCAGCAACTCCAAATG------CAGCAGCAGCAACAG---------------CACCAACAGCAGCAG---------------------------CAGCTGC------------AACAACACCAGCA---------------------------GCAAC-------------------------------------------------------AGCAACAACA---------------GCAGCAGC---------------------------------------------------AGCA-------------CA----------CAACGTCATACAATAACGCCAAATTCCCAAACTCG-----CTGTTCCGAC---CGCTGCAG---------------GATCA
droFic1	scf7180000454045:65687-65850 +		GGCGGCAATC----AACATCAACAGCAGCA-GCAGCAT---CATCAGCACGG---TGTGCAGCAGCAACAGCACGGCG---------------------------TGCAG---------------------C-----------AGCAGCACAA-TGTGCAGCAGCAGCAGCAAC------------------AGCACAA---------------------------------------TGTGCAGCAGCAGCAGCAACAGC-------------------------------------------------------------------------------------------------ACAATGTACAGCAGCAGCA-------------------------------------------------------------------------------CGTGCAG---------------CAGCA
droEle1	scf7180000491214:2531610-2531788 +		AACATCAGCA--ACAGCAACACCAGCAGTT-GCAAC---------------------------------------ATTAACAACCTCCAAAG------CAGCAGCAGCAGCAG---------------TAGCAGCAACC------------ACAGATG--------------------TTGCTGGTGGCAATAGCAATAGCA---------------------------ACACCAACAGC---------------AACAGC-------------------------------------------AAAC----------------------------------------------------------------------------------------------CCAGTACAAGTAC----ACG------------AGATAAACTAAGCGAGTTGTCGACTGCTG--------------ACAACA
droRho1	scf7180000778058:6400-6580 -		AGCGACAACA--GCAGCAGCAACAACAGCA-GCAAC---------------------------------------AGCAACAACAACAGCAG------CAGCAGCAGCAGCAA---------------CAACAGCAGCA---------------------------GCAACAACAGC---------------AGCAGCAACTACAG--------CA-------------GCAGC---------------------AGCAAC----------------------------------AACAGCAGCATACC------------------------CAGCCGGATCCGCTGCAGCAACTAA-------------------------------------------------------------------------------CCAACTA------------CACGCAG------CAGCAGTTGCCGCA
droBia1	scf7180000299102:993097-993268 +		GGCAGCAGCA--GGAGCACAAAAAACAGCA-GCAAC------ACATACGACAGAGGCAGC---------------AGCAACATC---AACAG------CACCAGCAGCAATCC---------------CAACAGCAACA---------------------------------------------------------TCAGCA---CACCCAACA---------GCAACAT---------------------------CAGC-------------------------------------------ACACCCAACAGCAACATCAGCAATGCAATC---------------------------------------AG-------------------------------------------------------------------CTGGCAACAG---CGTTGCCC---------------AGTTA
droTak1	scf7180000415352:514432-514594 -		AGCAGCAACA--GAAGCAAAATCAGCAGCA-ACAGAAACAAAATCAGC---------AGCAGCAGCAACAGCAAAACCAGCAGCCACGCTTG------CA------------------------------GCAGCAGCA---------------------------GAAGCAACAGC------------AGCAACGTCTGCA---------------------------GCAGCAACAGC---------GTTTGCAACAGC-------------------------AACAGCA------------------------------GC------------------------------------------------AAC-------------------------------------------------------------------------------AACAGCAG---------------CAGCA
droEug1	scf7180000409727:321-490 +		AGCGACAACA--GCGGCAGCGACAACAGCG-GCAGC---------------------------------------GACAACAGCGGCAGCGA------CAGCAGCGGCGGCGA---------------CGTCGTCGGCGGCAA---------------------------CGACGAC------------GGCAGCAGCAGCG---------------------------ACGAC-------------------------------------------------------GGCAGC------------------------------------------------------------------------------GACG-GCCACAACAACATA----------CAAAACCATACGAA------------------ATGTGAGT-AGGCT---T---TTTGTCTG---------------AATTA
dm3	chrX:9305797-9305965 +		AGCAGCAACAATGGAACAGCAGCAGCAACC-GCAGCCA---GGAC------------------------------AACAGCAAC---ATCAGCAGCAGCAGCAGCTGCA---------------------GC-----------AGCAGCACAAAAGCA--------------------ACACAGAGCACAGCAGCAACATCA---G--------TTAACTGCA------GCAACAGT---------------GGCAACAAT-------------------------AACAGC---------------------------------------------------------------------------------AGCA---------------------------------------------------------------------CAAAAA---GGCTGCAG---------------CAGCA
droSim2	3l:5195362-5195541 -		AACAACATCC--GTAGCCACAACATCAACA-GCAGC---------------------------------------AGCAGCAGCAACAGCAG------CAGCATCAGCAGCGG---------------CGGCAGGAGCAGCAA---------------------------CAGTAGC------------AGCAGCACAAGCA---------------------GCAACAC---------------------------CGAA----------------------------GGAAGCA---------------ACATCCGCAGGAGC------------------------------------------------AAC-------------ACCGTCAGCCGCTAAATATCCTA-------------------------------AGGCCAGCT---CCTTGAGC---------------CAGCA
droSec2	scaffold_1:4459500-4459666 -		AAGAGCAGCA--GCAGCAGTAGCAGCAACA-GCAGC---------------------------------------AGCAATAGCAGCAGTAG------CAGCCACAGTAGCAG---------------CAGCAGC---A---------------------------------TCA------------GCGGCAGCAGCGAC----------------------------------------------------------------------------------------------------------------------------------------------------------CAGCCAACACACAGCAACATTCC-GCGCAGCACCATCGTCCGCCTGACGACGGCCAACGGG------------------AAGCCA-----------------GGAGCG---------------GCTGG
droYak3	3L:8358710-8358888 -		AACAGCAGCA--GCAGCAACAACAGCAACA-GCAGC---------------------------------------AGCAGCAGCAACAGCAA------CAGCAGCAGCAGCAA---------------CAACAGCAACA---------------------------GCAGCAACAGCA---------GCAACAGCAGCAACA---------------------------ACAAC-------------------------------------------------------AGCAGCAACA---------------GCAGCAGTTA---------C---------------------------------------AGC-------------TGCAGCAACAAAATGATAT-----------------------------CTTACTGCGCGAGGA---CATCGATG---------------ATATA
droEre2	scaffold_4690:4660505-4660654 +		GGCGCCGAGT--CATGCTGCAACAGCAACA-GCAAC---------------------------------------AACAACGGCAACAGTTG------CAACTGCAACGGCAA---------------CAACAACGGCG---------------------------A----ACCA------------GCAGCAGCAGCAGCA---------------------------ACATCATAATC---------------ACCATA-------------------------ATCTTC---------------------------------------------------------------------------------AGCA--------------------------------------C------------------ATGCAATCAAGGC--------AATTGCAG---------------GCACA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

AGCGACAACT--GGAGCATTAACAGCAAAAGGCAGCAA---C---------------------------------AATAACGGC---AGCGG---------TGGCAGCGGCGG---------------CGGCAGC--------GGCAGCGCAAATGTG--------------------AAACAAACGACAGCAACAACGGCA---------------------------ACTTCGTCGTC---------------GTCAGC-------------------------------------------AAAT----------------------------------------------------------------------------------------------CAGTTGCAAACGAA------------------ATGCAAACCAGGCCAGAG---CGTTGCTG---------------AAGCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................................AAACGACAGCAACAACGGCA---------------------------..............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAA------------------ATGCAAACCAGGCCAGAG---CGT.........................	24	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACGAA------------------ATGCAAACCAGGCCAGAG---C...........................	28	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAAACGAA------------------ATGCAAACCAGGCC...................................	25	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCAGGCCAGAG---CGTT........................	18	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................AACGAA------------------ATGCAAACCAGGCCAGAG---CG..........................	26	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCAGGCCAGAG---CGTTGCTG---------------AAGCA	27	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACGAA------------------ATGCAAACCAGGCC...................................	19	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................AACGACAGCAACAACGGC..........................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	1	0

droVir3

AGCGACAACT--GGAGCATTAACAGCAATAGGCAAC---------------------------------------AGCAACAGC---AGCGG------CGTCAGCGGCAG---------------------C-----------GGCAGCGCAAATGTG--------------------AAACAAACGGCAGCAACAGCGGCT---------------------------ACATCGTCGTC---------------GTCAGC-------------------------------------------AAAT----------------------------------------------------------------------------------------------CAGTTGCAAACGAA------------------ATGCAAACCAGGCCAGAG---CGTTGCTG---------------AAGCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACCAGGCCAGAG---CG..........................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAACCAGGCCAGAG---CG..........................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACGAA------------------ATGCAAACCAGGCCAGAG---C...........................	28	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................AAACGAA------------------ATGCAAACCAGGCCAGAG---C...........................	26	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCCAGAG---CGTTGCTG---------------AA...	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCAGGCCAGAG---CGTTGC......................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AACAGC---AGCGG------CGTCAGCGGCA......................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................AGC---AGCGG------CGTCAGCGGCAG---------------------C-----------GGC.................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACCAGGCCAGAG---CGTTGCTG---------------.....	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................CGAA------------------ATGCAAACCAGGCCAGAG---CGTT........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGAG---CGTTGCTG---------------AAG..	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGGCCAGAG---CGTTGCTG---------------.....	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................G--------------------AAACAAACGGCAGCAACAGCG............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACCAGGCCAGAG---CGT.........................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACCAGGCCAGAG---CGTTGCT.....................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAACCAGGCCAGAG---CG..........................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................CAAATGTG--------------------AAACAAACGGCA.....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................AGCGG------CGTCAGCGGCAG---------------------C-----------GGCAGC..............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................GCGCAAATGTG--------------------AAACAAACGGC......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGGCCAGAG---CGTTGCTG---------------AA...	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAACCAGGCCAGAG---CGTTGCT.....................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................AGC---AGCGG------CGTCAGCGGCAG---------------------C-----------GGCA................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACCAGGCCAGAG---CGTTGCTG---------------AAG..	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................GGCAGCGCAAATGTG--------------------AAACAAACGGCA.....................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAA------------------ATGCAAACCAGGCCAGAG---CGTT........................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................ATAGGCAAC---------------------------------------AGCAACAGC---AGCGG------C................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAACCAGGCCAGAG---CGTTGCTG---------------.....	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................AAATGTG--------------------AAACAAACGGCAGC...................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACCAGGCCAGAG---CGTTGC......................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAACGAA------------------ATGCAAACCAGGCCAGAG---C...........................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................GGCT---------------------------ACATCGTCGTC---------------GTCAGC-------------------------------------------G..................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................AGCAACAGC---AGCGG------CGTC.............................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAGGCCAGAG---CGTTG.......................	18	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAGGCCAGAG---CGTTGC......................	19	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

AGCGACAGCG--CCGACAACAACAACTGGA-GCATT---------------------------------------AACAGCGAC---AG-----------------------------------------GC-----------GGCGGCGCAAATGTG--------------------AAACAAACGAC---GACTTCGTCG---------------------------TCGTCGTCGTC---------------GTCAGC-------------------------------------------AAAT----------------------------------------------------------------------------------------------CAGTTGCAAACGAA------------------ATGCAAACAGGGCCAGAAGGCCACTGCTG---------------ATGCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCCACTGCTG---------------ATGCA	19	1	1.00	1	1	0

droWil2

AGCAACAATT--GCAGCAACAACAGCAACA-GCAGCAA---CAATGGCAG---------------------------CAACAACAACAGCAA------CAACAACTGCAGCAG---CAA---CAATTGCAGCAACAACAGCAA---------------------------CAGCAGC------------AACAACAGCAGCA---------------------------ACAACAACAGC---------AGCAGCAACAGC-------------------------AGCATCA------------------------------GC------------------------------------------------AAC-------------------------------------------------------------------------------AGCAACAG---------------CAGCA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................AA---CAATGGCAG---------------------------CAACAACAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.70	14	0	14	0	0	0
.................AACAACAGCAACA-GCAGCAA---CAATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.35	7	0	7	0	0	0
...............................................................................................................................................................................................................................................................AACAGC-------------------------AGCATCA------------------------------GC------------------------------------------------AAC-------------------------------------------------------------------------------AGC.........................	21	4	0.25	1	0	0	0	1	0
.....................................................................................................................AA---CAATTGCAGCAACAACAG.......................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0
...AACAATT--GCAGCAACAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0
....................................................................................................................................................................................................GCAGCA---------------------------ACAACAACAGC---------A.........................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	3	0
.................AACAACAGCAACA-GCAGCAA---CAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
....................................................................................................................................AACAACAGCAA---------------------------CAGCAGC------------AACAA.................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
..................................................................................................CAACAACTGCAGCAG---CAA---CAATTGC..................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
..............AGCAACAACAGCAACA-GCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0
....................................AA---CAATGGCAG---------------------------CAACAACAACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0
.........T--GCAGCAACAACAGCAACA-GCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
.................................................................................................................................AGCAACAACAGCAA---------------------------CAGCAG...................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0
..............................................................................................................................TGCAGCAACAACAGCAA---------------------------CAGCAG...................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
...AACAATT--GCAGCAACAACAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	2	0
.....................................................................................................................AA---CAATTGCAGCAACAACAGCA.....................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	2	0
..............................................................................................................................................................................................................................................................................................AGCATCA------------------------------GC------------------------------------------------AAC-------------------------------------------------------------------------------AGCAACAG---------------CAG..	23	17	0.06	1	0	1	0	0	0
.............................A-GCAGCAA---CAATGGCAG---------------------------CAACAACA..............................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
................CAACAACAGCAACA-GCAGCAA---C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................A------------------------------GC------------------------------------------------AAC-------------------------------------------------------------------------------AGCAACAG---------------CAGCA	19	20	0.05	1	0	1	0	0	0
............................................TGGCAG---------------------------CAACAACAACAGCAA------CAA..............................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
............................................TGGCAG---------------------------CAACAACAACAGCAA------CAACAA...........................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
.......................AGCAACA-GCAGCAA---CAATGGCAG---------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..CAACAATT--GCAGCAACAACAGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.........T--GCAGCAACAACAGCAACA-GCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.............................................GGCAG---------------------------CAACAACAACAGCAA------C................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.....................................................................................ACAGCAA------CAACAACTGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.............................................................................................................................TTGCAGCAACAACAGCAA---------------------------CAGCAGC------------......................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
..............................................................................AACAACAACAGCAA------CAACAACTGC.......................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
..............................................................................AACAACAACAGCAA------CAACAACTGCAGC....................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.........T--GCAGCAACAACAGCAACA-GCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................CAACAGCAGCA---------------------------ACAACAACAGC---------AGC.......................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
........TT--GCAGCAACAACAGCAACA-GCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................C------------AACAACAGCAGCA---------------------------ACAACAAC......................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.....................................................................................................................AA---CAATTGCAGCAACAACAGC......................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..................................................................................................CAACAACTGCAGCAG---CAA---CAATTGCAGC...............................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
...................................................................................................AACAACTGCAGCAG---CAA---CAATTG...................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..........................................AATGGCAG---------------------------CAACAACAACAGCAA------CAAC.............................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
...................CAACAGCAACA-GCAGCAA---CAATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
............................................................................................................................................CAA---------------------------CAGCAGC------------AACAACAGC.............................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
..............................................................................................................................TGCAGCAACAACAGCAA---------------------------CAGCA....................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
....................................................................................................................CAA---CAATTGCAGCAACAACAGCAA---------------------------.........................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...AACAATT--GCAGCAACAACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...................................................................................................AACAACTGCAGCAG---CAA---CAATT....................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.............................................................................................................................TTGCAGCAACAACAGCAA---------------------------CAGCAG...................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...........................................................................................................................AATTGCAGCAACAACAGCAA---------------------------CAGC.....................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
..........................................................................................AA------CAACAACTGCAGCAG---CAA---C........................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.................................................................................AACAACAGCAA------CAACAACTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................ACAACAACAGC---------AGCAGCAACAG...............................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
.......................................................................................AGCAA------CAACAACTGCAGCAG---CAA---CA.......................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
..........................................AATGGCAG---------------------------CAACAACAACAGCAA------CA...............................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
.....................................A---CAATGGCAG---------------------------CAACAACAACAGCA........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................CAACAGCAA------CAACAACTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.....................................................................................................................AA---CAATTGCAGCAACAACAGCAA---------------------------C........................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................CAACAACAGCAA---------------------------CAGCAGC------------AAC...................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
...AACAATT--GCAGCAACAACAGCAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
............................................TGGCAG---------------------------CAACAACAACAGCAA------CAACAAC..........................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
...................................CAA---CAATGGCAG---------------------------CAACAACAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................AGCAGCA---------------------------ACAACAACAGC---------AG........................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
.................................AGCAA---CAATGGCAG---------------------------CAACAACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
........TT--GCAGCAACAACAGCAACA-GCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................ACAGCAGCA---------------------------ACAACAACAGC---------A.........................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
................................................................................CAACAACAGCAA------CAACAACTGCAGC....................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
.....................................A---CAATGGCAG---------------------------CAACAACAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
................................................AG---------------------------CAACAACAACAGCAA------CAACAACTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0
......AATT--GCAGCAACAACAGCAACA-GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................AACAACAGC---------AGCAGCAACAGC-------------------------A....................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.....................................................................................................................AA---CAATTGCAGCAACAACAGCAA---------------------------.........................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
....................................................................................AACAGCAA------CAACAACTGCAGCAG---C..............................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
..........................................AATGGCAG---------------------------CAACAACAACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
............................CA-GCAGCAA---CAATGGCAG---------------------------CAA...................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
..............................................................................................................................TGCAGCAACAACAGCAA---------------------------CAGCAGC------------......................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
..............................................................................AACAACAACAGCAA------CAACAACT.........................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.............................................GGCAG---------------------------CAACAACAACAGCAA------CAA..............................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..........................................AATGGCAG---------------------------CAACAACAACAGCA........................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
...AACAATT--GCAGCAACAACAGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0

dp5

AGCTGCAGCA--GCAGCAACAACAGCAGCA-ACATC---------------------------------------AACTGCAGC---AGCAG------CATCAGCAGCAGCAGCAGCAACTG------CAGCAGAAGCAG------------------------------CAACAGCA---------ACAACAGCAGCAGCA---------------------------ACATAAACATC---------------AACAGC-------------------------------------------AACA---ACAGCAGCAGCAAC------------------------------------ATAAACATC---AGC-------------------------------------------------------------------------------AGCAACAG---------------CAGCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................ATC---------------AACAGC-------------------------------------------AACA---ACAGCAGCAG..................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................CAG------CATCAGCAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	2	0	0	1	0	0	0	0	0
.........................................................................................CAG------CATCAGCAGCAGCAGCAG...............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	1	0	0	2	0	0
.........A--GCAGCAACAACAGCAGCA-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
................................................................................CAGC---AGCAG------CATCAGCAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............GCAGCAACAACAGCAGCA-AC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
................................................................................CAGC---AGCAG------CATCAGCAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................G------CATCAGCAGCAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.................................................................................AGC---AGCAG------CATCAGCAGCAGCAGCAG...............................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................AGC-------------------------------------------AACA---ACAGCAGCAGCAA...............................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
....GCAGCA--GCAGCAACAACAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....CAGCA--GCAGCAACAACAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0
........CA--GCAGCAACAACAGCAGCA-ACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................ACAGCA---------ACAACAGCAGCAGCA---------------------------..............................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................CAGC---AGCAG------CATCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
........................................................................................GCAG------CATCAGCAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................AGCAGCAGCAGCAGCAACTG------...................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................CAG------CATCAGCAGCAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................GCAG------------------------------CAACAGCA---------ACAACAGCAGCA............................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................CAACAGCA---------ACAACAGCAGCA............................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................G------------------------------CAACAGCA---------ACAACAGCAGCAGC..........................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................AGCAG------CATCAGCAGCAGCAGCAG...............................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................CATC---AGC-------------------------------------------------------------------------------AGCAACAG---------------CAGC.	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................AG------------------------------CAACAGCA---------ACAACAGCAGC.............................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................C---AGCAG------CATCAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0

droPer2

AGCAACAACA--ACAGCAACAGCAGCAACA-GCAGC---------------------------------------AGCAACAGCAGCAGCAG------CAACAACAGCAGCAG---------------CAGCAGCAACAGCAG---------------------------CAAGTGTT---------GCAACATCAGCAGCA---------------------------G------------------------------CATACACCGAACACACCGTCGTCGAG---TGT------------GGGA----------------------------------------------------------------------------------------------TCATCGGCAACGAT------------------GA-CCAGCCAGGTAATGT---CGCCGCAGAGTCCGCT-------GGGCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................AACAACAGCAGCAG---------------CAGCAGCAACAG.......................................................................................................................................................................................................................................................................................................................................................	26	18	0.06	1	0	1	0	0	0	0
.........................................................................................................AGCAGCAG---------------CAGCAGCAACAGCAG---------------------------CAA......................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.....................GCAGCAACA-GCAGC---------------------------------------AGCAACAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0
................CAACAGCAGCAACA-GCAGC---------------------------------------AGCA....................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.......................................................................................................ACAGCAGCAG---------------CAGCAGCAAC.........................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
..................................................................................GCAGCAGCAG------CAACAACAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
...................................C---------------------------------------AGCAACAGCAGCAGCAG------CAACA............................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
..........................................................................................AG------CAACAACAGCAGCAG---------------CAGC...............................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
...........................................................................................G------CAACAACAGCAGCAG---------------CAGC...............................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0

droAna3

AGCGGCAGCA--GAGACAACTGGAGCATTA-ACGGA---------------------------------------GACAGCAAC---AGCAG------CAGCAGCAGCAGCAG---------------CAACACAAGCG---------------------------GCAGCGACAGCA---------GCGGCAGCAGCAGCA---------------------------ACGTCGTCGTC---------------GTCAGC-------------------------------------------AAAT----------------------------------------------------------------------------------------------CAATTGTTAACGAA------------------ATGCAAACCCGGCCAGAG---CGTTGCTG---------------AAGGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................GACAGCAAC---AGCAG------CAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCGGCCAGAG---CGTTGCT.....................	20	1	2.00	2	0	0	0	0	0	2
...........................................................................................................................................................................................GCGGCAGCAGCAGCA---------------------------ACGTCGTCGTC---------------G...................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................TAACGAA------------------ATGCAAACCCGGC....................................	20	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................G---------------------------GCAGCGACAGCA---------GCGGCAGCAGCAGC..........................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACCCGGCCAGAG---CGTTGCTG---------------AAGGC	28	1	1.00	1	0	1	0	0	0	0
...............................................................................................................AG---------------CAACACAAGCG---------------------------GCAGCGACAGCA---------........................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................CGAA------------------ATGCAAACCCGGCCAG.................................	20	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................CAGCAGCAGCA---------------------------ACGTCGTCG.....................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........A--GAGACAACTGGAGCATTA-AC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
............GAGACAACTGGAGCATTA-ACGGA---------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
................................................................................................................G---------------CAACACAAGCG---------------------------GCAGCGACA....................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAA------------------ATGCAAACCCGGCCAGAG---CGTTGCT.....................	28	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................CAGCAGCA---------------------------ACGTCGTCGTC---------------GTCAGC-------------------------------------------AA.................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................GTC---------------GTCAGC-------------------------------------------AAAT----------------------------------------------------------------------------------------------CAATTGT..........................................................................	20	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................GCAGCAGCA---------------------------ACGTCGTCGTC---------------GTCAGC-------------------------------------------A..................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACGAA------------------ATGCAAACCCGGCCAGAG---C...........................	28	1	1.00	1	0	0	0	0	1	0
................................................................................CAAC---AGCAG------CAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	2
..............................................................................AGCAAC---AGCAG------CAGCAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.................................................................................AAC---AGCAG------CAGCAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0
..................................................................................AC---AGCAG------CAGCAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................CAGCA---------GCGGCAGCAGCAGC..........................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0

droBip1

AGCAGCAACA--GCAACAACAACAGCAACA-ACAGC---------------------------------------AACAACAAC---AGCAA------CATCAGCAGCAGCTT---------------CATCATCACCA---------------------------TCAACAACAACA---------ACAACAGCAGCAACA---T--------TTGACGCCG------GCGGCTGT---------------------------------------------------------------------GA-------------------CAAATGTGAATGGAAATAT-----------------------------------------------------------------------------------------TGCAGCACAGGC--------------AG------CAGTAGCTGCAGCC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGCAACAACA--GATGCAGCAGCAGCATCA-GCTGC---------------------------------------ACCAGCAACTCCAAATG------CAGCAGCAGCAACAG---------------CACCAACAGCAGCAG---------------------------CAGCTGC------------AACAACACCAGCA---------------------------GCAAC-------------------------------------------------------AGCAACAACA---------------GCAGCAGC---------------------------------------------------AGCA-------------CA----------CAACGTCATACAATAACGCCAAATTCCCAAACTCG-----CTGTTCCGAC---CGCTGCAG---------------GATCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGCGGCAATC----AACATCAACAGCAGCA-GCAGCAT---CATCAGCACGG---TGTGCAGCAGCAACAGCACGGCG---------------------------TGCAG---------------------C-----------AGCAGCACAA-TGTGCAGCAGCAGCAGCAAC------------------AGCACAA---------------------------------------TGTGCAGCAGCAGCAGCAACAGC-------------------------------------------------------------------------------------------------ACAATGTACAGCAGCAGCA-------------------------------------------------------------------------------CGTGCAG---------------CAGCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AACATCAGCA--ACAGCAACACCAGCAGTT-GCAAC---------------------------------------ATTAACAACCTCCAAAG------CAGCAGCAGCAGCAG---------------TAGCAGCAACC------------ACAGATG--------------------TTGCTGGTGGCAATAGCAATAGCA---------------------------ACACCAACAGC---------------AACAGC-------------------------------------------AAAC----------------------------------------------------------------------------------------------CCAGTACAAGTAC----ACG------------AGATAAACTAAGCGAGTTGTCGACTGCTG--------------ACAACA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGCGACAACA--GCAGCAGCAACAACAGCA-GCAAC---------------------------------------AGCAACAACAACAGCAG------CAGCAGCAGCAGCAA---------------CAACAGCAGCA---------------------------GCAACAACAGC---------------AGCAGCAACTACAG--------CA-------------GCAGC---------------------AGCAAC----------------------------------AACAGCAGCATACC------------------------CAGCCGGATCCGCTGCAGCAACTAA-------------------------------------------------------------------------------CCAACTA------------CACGCAG------CAGCAGTTGCCGCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGCAGCAGCA--GGAGCACAAAAAACAGCA-GCAAC------ACATACGACAGAGGCAGC---------------AGCAACATC---AACAG------CACCAGCAGCAATCC---------------CAACAGCAACA---------------------------------------------------------TCAGCA---CACCCAACA---------GCAACAT---------------------------CAGC-------------------------------------------ACACCCAACAGCAACATCAGCAATGCAATC---------------------------------------AG-------------------------------------------------------------------CTGGCAACAG---CGTTGCCC---------------AGTTA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGCAGCAACA--GAAGCAAAATCAGCAGCA-ACAGAAACAAAATCAGC---------AGCAGCAGCAACAGCAAAACCAGCAGCCACGCTTG------CA------------------------------GCAGCAGCA---------------------------GAAGCAACAGC------------AGCAACGTCTGCA---------------------------GCAGCAACAGC---------GTTTGCAACAGC-------------------------AACAGCA------------------------------GC------------------------------------------------AAC-------------------------------------------------------------------------------AACAGCAG---------------CAGCA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGCGACAACA--GCGGCAGCGACAACAGCG-GCAGC---------------------------------------GACAACAGCGGCAGCGA------CAGCAGCGGCGGCGA---------------CGTCGTCGGCGGCAA---------------------------CGACGAC------------GGCAGCAGCAGCG---------------------------ACGAC-------------------------------------------------------GGCAGC------------------------------------------------------------------------------GACG-GCCACAACAACATA----------CAAAACCATACGAA------------------ATGTGAGT-AGGCT---T---TTTGTCTG---------------AATTA	Size	Hit Count	Total Norm	Total
No Reads

dm3

AGCAGCAACAATGGAACAGCAGCAGCAACC-GCAGCCA---GGAC------------------------------AACAGCAAC---ATCAGCAGCAGCAGCAGCTGCA---------------------GC-----------AGCAGCACAAAAGCA--------------------ACACAGAGCACAGCAGCAACATCA---G--------TTAACTGCA------GCAACAGT---------------GGCAACAAT-------------------------AACAGC---------------------------------------------------------------------------------AGCA---------------------------------------------------------------------CAAAAA---GGCTGCAG---------------CAGCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................................................................CAAAAGCA--------------------ACACAGAGCACAGCAGC................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AC------------------------------AACAGCAAC---ATCAGCAGCAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................	27	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................A--------------------ACACAGAGCACAGCAGCAACAT...........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................GCAAC---ATCAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................AC---ATCAGCAGCAGCAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................ACAGCAAC---ATCAGCAGCAGCAGCAA...........................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGCAAC---ATCAGCAGCAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGCAAC---ATCAGCAGCAGCAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................CAGCAGCAGCAGCAGCTGCA---------------------.................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................CAAC---ATCAGCAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................CAGCAAC---ATCAGCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AACAACATCC--GTAGCCACAACATCAACA-GCAGC---------------------------------------AGCAGCAGCAACAGCAG------CAGCATCAGCAGCGG---------------CGGCAGGAGCAGCAA---------------------------CAGTAGC------------AGCAGCACAAGCA---------------------GCAACAC---------------------------CGAA----------------------------GGAAGCA---------------ACATCCGCAGGAGC------------------------------------------------AAC-------------ACCGTCAGCCGCTAAATATCCTA-------------------------------AGGCCAGCT---CCTTGAGC---------------CAGCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................ACA-GCAGC---------------------------------------AGCAGCAGCAACAGCAG------.................................................................................................................................................................................................................................................................................................................................................................................................	25	20	1.30	26	0	0	0	0	0	26	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGCAGCAACAGCAG------CAGCATC..........................................................................................................................................................................................................................................................................................................................................................................................	21	19	1.05	20	0	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CAACAC---------------------------CGAA----------------------------GGAAGCA---------------ACATCCGCAGGA................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................AAC-------------ACCGTCAGCCGCTAAAT.............................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................AG------CAGCATCAGCAGCGG---------------C..................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AAGAGCAGCA--GCAGCAGTAGCAGCAACA-GCAGC---------------------------------------AGCAATAGCAGCAGTAG------CAGCCACAGTAGCAG---------------CAGCAGC---A---------------------------------TCA------------GCGGCAGCAGCGAC----------------------------------------------------------------------------------------------------------------------------------------------------------CAGCCAACACACAGCAACATTCC-GCGCAGCACCATCGTCCGCCTGACGACGGCCAACGGG------------------AAGCCA-----------------GGAGCG---------------GCTGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................................................................................................................................A---------------------------------TCA------------GCGGCAGCAGCGAC----------------------------------------------------------------------------------------------------------------------------------------------------------CAGC............................................................................................................................	22	1	1.00	1	1	0	0	0
.AGAGCAGCA--GCAGCAGTAGCAGCAACA-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
................................CAGC---------------------------------------AGCAATAGCAGCAGA.........................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0

droYak3

AACAGCAGCA--GCAGCAACAACAGCAACA-GCAGC---------------------------------------AGCAGCAGCAACAGCAA------CAGCAGCAGCAGCAA---------------CAACAGCAACA---------------------------GCAGCAACAGCA---------GCAACAGCAGCAACA---------------------------ACAAC-------------------------------------------------------AGCAGCAACA---------------GCAGCAGTTA---------C---------------------------------------AGC-------------TGCAGCAACAAAATGATAT-----------------------------CTTACTGCGCGAGGA---CATCGATG---------------ATATA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................AT-----------------------------CTTACTGCGCGAGGA---CATCGATG---------------AT...	27	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.......................................................................................AGCAA------CAGCAGCAGCAGCAA---------------CAACAGC............................................................................................................................................................................................................................................................................................................................................................	27	20	1.20	24	0	0	0	0	0	0	0	0	0	0	24
.......................................................................................................................................................................................................................................AAC-------------------------------------------------------AGCAGCAACA---------------GCAGCAGTT................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0
.................AACAACAGCAACA-GCAGC---------------------------------------AGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................A---------GCAACAGCAGCAACA---------------------------ACAAC-------------------------------------------------------AGCA..............................................................................................................................................................................................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CAACA---------------------------ACAAC-------------------------------------------------------AGCAGCAACA---------------GC.......................................................................................................................................................................	22	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0
..............AGCAACAACAGCAACA-GCAGC---------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...........................ACA-GCAGC---------------------------------------AGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................CAA------CAGCAGCAGCAGCAA---------------CA.................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................GCAGCAGCAACAGCAA------CAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................A---------------CAACAGCAACA---------------------------GCAGCA.......................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................AGCAA---------------CAACAGCAACA---------------------------GCAGC........................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................ACAGCAGCAACA---------------------------ACAAC-------------------------------------------------------AGC...............................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................GC---------------------------------------AGCAGCAGCAACAGCAA------C................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................GCAACA-GCAGC---------------------------------------AGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0
..................ACAACAGCAACA-GCAGC---------------------------------------A.......................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................CAGCAACAGCA---------GCAACAGCA...............................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................A---------GCAACAGCAGCAACA---------------------------ACAA..........................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................AGCAGCAACAGCAA------CAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................AACAGCAACA---------------------------GCAGCAACAG...................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................CAAC-------------------------------------------------------AGCAGCAACA---------------GCAGCA...................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................AACAGCA---------GCAACAGCAGC.............................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0

droEre2

GGCGCCGAGT--CATGCTGCAACAGCAACA-GCAAC---------------------------------------AACAACGGCAACAGTTG------CAACTGCAACGGCAA---------------CAACAACGGCG---------------------------A----ACCA------------GCAGCAGCAGCAGCA---------------------------ACATCATAATC---------------ACCATA-------------------------ATCTTC---------------------------------------------------------------------------------AGCA--------------------------------------C------------------ATGCAATCAAGGC--------AATTGCAG---------------GCACA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................................................................................A---------------CAACAACGGCG---------------------------A----ACCA------------GCAGCAGCA...............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0

dmo_474

scaffold_6328:829115-829189 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads