dmo_439

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGTCAGACGGCATTGAAGTTGAACAAATTGTGGAGAGCAAGCCGAAAAGGGTGAGAGATACTTTTAACGCAATCTTACACACACTCACACACACACACAGATTTTTATATGGTATATGTATCAAGAAAATATTAAGTGCGGCACAAGACGAAACAAAAAGAATTAGACTCATAAGAGATGCGACAACGGGGCAGTTAAACAGCAACACAGCAACGGCAACAGCAGCGCAAAAGAAAATCTGCAGAAACAGA ************************************************.((((((...)))))).((((.(((((................(((....((((((...(((((....))))).)))))).....)))((........)).....................)))))..))))..(((......))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	M046 female body	V056 head	M060 embryo	V049 head
.GTCAGACGGCATTGAAGTT.......................................................................................................................................................................................................................................	19	0	1	2.00	2	1	1	0	0	0
.........................................CCGAAAAGGGTGAGAGATACT.............................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	1	0
..................TTGAACAAATTGTGGAGAGCA....................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.............TGAAGTTGAACAAATTGTGGAGAGCAA...................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
....................GAACAAATTGTGGAGAGCAAGCCG...............................................................................................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0
....AGACGGCATTGAAGTTGAA....................................................................................................................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0
....AGACGGCATTGAAGTTGAAC...................................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0
.GTCAGACGGCATTGAAGT........................................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	1
.................GTTGAACAAATTGTGGAGAGC.....................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
....................GAACAAATTGTGGAGAGCA....................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
................................................................................ACACACTCACACACACACAGATTTTTAT...............................................................................................................................................	28	2	3	0.33	1	0	1	0	0	0
..........................................................................................................................................................AAAAATGATTAGACTCATA..............................................................................	19	2	11	0.09	1	0	0	1	0	0
..............................................................................................................................................................................................................ACAGCAACGGCAACAGCAG..........................	19	0	16	0.06	1	1	0	0	0	0
.......................CAAAGCGTGGGGAGCAAGC.................................................................................................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0

ACAGTCTGCCGTAACTTCAACTTGTTTAACACCTCTCGTTCGGCTTTTCCCACTCTCTATGAAAATTGCGTTAGAATGTGTGTGAGTGTGTGTGTGTGTCTAAAAATATACCATATACATAGTTCTTTTATAATTCACGCCGTGTTCTGCTTTGTTTTTCTTAATCTGAGTATTCTCTACGCTGTTGCCCCGTCAATTTGTCGTTGTGTCGTTGCCGTTGTCGTCGCGTTTTCTTTTAGACGTCTTTGTCT ************************************************.((((((...)))))).((((.(((((................(((....((((((...(((((....))))).)))))).....)))((........)).....................)))))..))))..(((......))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body
..................................................................................TGAGTGTGTGTGTGTGTCT......................................................................................................................................................	19	0	20	0.05	1	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6308:2683862-2684112 +	dmo_439	TGTCAGACGGCATTGAAGTTG--AACAAATTGTGGAGAGCAAGCCGAAAAGGGTGAG------------------------------------AGATACTTTTAACGCAATC------TTAC--------ACACACTCACACACACA--------CACAGATTTTTATAT---GGTATATG-------TAT-------------------------------CAAGAAAATATTAAGTGCGG---CACAAGACGA--A-ACAAAAAGAATT-AGACTCATAAGAGATGCGACAACGGGGCAGTTAAACAGCAACACA-GCAACGGCAACAGCA---G----------CGCAAAAG-AAAATCTGCA----GAAACAGA
droVir3	scaffold_12472:746316-746567 -	dvi_1086	TGTCAGACGGCATTGAAGTTG--AACAAATTGTGGAGAGCAAACCGAGAAGGGTGAG------------------------------------AGATACTTTA---------------------------ACACATGCACACATACA--------GGCAGGAGTGCATCT---TGTATATG-------TAT-------------------------------TACGAAAATATTAAGTGCCG---CAAAAGACGA--A-ACAAAAAGAATT-AGACTCTTAGGAGATGCGACAACGGGGCAGTCAAACCGCAAAAGCAGCAGCAGCAGCAGCAGCAGAGGCGCAAAGCGCAAAAT-AAAATCTGCA----GAAACAGA
droGri2	scaffold_15203:3856713-3856994 +		TGTCAGACGGCATTGAAGTTG--AACAAATTGTGGAGACCAAGCCAAGAAGGGTGAG------------------------------------ACATCCTACAA----------------AC--------ACACACTCACACACA--CATTTACACTTGCAAGCATAC-TGCATACACACACATTTAGAATACGTAGAAACAAAGATGTACATATAATGTTATAAGAAAATATTAAGTGCGG---CCACAGACGACGA-ACAAAAAGAATT-AGACTTATAAAAGATGCGACAACAGGGCAGTCAAACACCA------GCAGCAGCAGCAGCA---G------------CAAAAG-AAAATCTGCA----GAAACAGA
droWil2	scf2_1100000004909:11362197-11362419 +		TGTCAGACGGCATTGAAGTTG--AACAAATCGTGGAGAGCAAGCCCAGAAGGGTAAGTACA-------CTCCAAAAGGGGAG-----------ACATACTATCA-----TTCATATATGTATAAATGGGCATACATATGT------ATAC--A------GG------------------GTGATCCAA-------------ATTGATGTTCTTGGAATATGATTTTTCATTTTT-------G-------------------AAAAATAACT-GCATTTT--GGACACCC----------------TATATTA------------------------A------------TATATGAACACTCTACA----TACATATA
dp5	XL_group3a:554700-554958 -		TGTCGGACGGCCTCGAGGTTG--AGCAGATCGTGGAGAGCAAGCCGAGAAGGGTGAGTACTCGTAGTCCTCCGGG---G-CGCTATATTTTATATAT---------------------TTACATATGTACATGCATACAC------ACAT--ACATACATAAGTACATGTGCATGTGTATGCATACAGAATAC-------------------------------AGAAAGTAATAAGTGCGGCGGCAAAAGACAA---CCAACCGAAAATTAAGAATTATAAAAGATTCGAT---GGGGAAACAAAAGAGCAAAAGAAAC-------------------------------------------GGG----GCAACAGA
droPer2	scaffold_39:102779-103058 -		TGTCGGACGGCATCGAGGTTG--AGCAGATCGTGGAGAGCAAGCCGAGAAGGGTGAGTACTCGTAGTCCTCCAGG---G-CGCTATATTTTATATAT---------------------TTACATATGTACATACATCCAC------ACAT--ACATATGTAAGTACATGTGCATGTGGATGCATACAGTATAC-------------------------------AGAAAGTAATAAGTGCGGCGGCAACAGACAA---CCAACCGAAAATTAAGAATTATAAAAGATTCGAT---GGGGAAACAAAAGAGCAAAAGAAAC-GGGGCAACA------G------------AGACAG-AAA----GAAGCAAGAGAC--A
droAna3	scaffold_13047:1087704-1087758 -		TGTCGGACGGTATCGAGGTCG--AGCAGATAGTGGAGAGCAAGCCGAGGAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396575:342168-342222 +		TGTCGGACGGCATCGAGGTCG--AGCAGATAGTGGAGAGCAAGCCGAGGAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453829:40467-40521 -		TGTCGGACGGCATCGAGGTCG--AGCAATTGGTGGAGACCAAGCCAAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491006:939515-939569 +		TGTCGGACGGCATCGAGGTCG--AGCAAATGGTGGAGAGCAAGCCGAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000779985:1413569-1413623 +		TGTCGGACGGCATCGAGGTCG--AGCAAATGGTGGAGAGCAAGCCGAGGAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302432:517633-517687 -		TGTCGGACGGCATCGAGGTCG--AGCAGTTGGTGGAGAGCAAGCCGAGGAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000414217:44375-44429 +		TGTCGGACGGCATCGAGGTCG--AGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409095:152009-152114 +		TGTCCACCAGCAGCAACATGAGGAACAAATCG--------------------------ACTTGCTGTCCACTCAA---C-CAACTCAGGTGAGAGATAA---------------------TCTGGGAGACACACAGACAC------AAAC--ACACACACAATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chrX:18669613-18669667 +		TGTCGGACGGCATCGAGGTCG--AGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	node_39788:161823-161877 +		TGTCGGACGGCATCGAGGTCG--AGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_8:968259-968313 +		TGTCGGACGGCATCGAGGTCG--AGCAATTGGTGGAGAGCAAGCCAAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	X:17291417-17291471 +		TGTCGGACGGCATCGAGGTCG--AGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4690:8968853-8968907 +		TGTCGGACGGCATCGAGGTCG--AGCAGTTGGTGGAGAGCAAGCCGAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

TGTCAGACGGCATTGAAGTTG--AACAAATTGTGGAGAGCAAGCCGAAAAGGGTGAG------------------------------------AGATACTTTTAACGCAATC------TTAC--------ACACACTCACACACACA--------CACAGATTTTTATAT---GGTATATG-------TAT-------------------------------CAAGAAAATATTAAGTGCGG---CACAAGACGA--A-ACAAAAAGAATT-AGACTCATAAGAGATGCGACAACGGGGCAGTTAAACAGCAACACA-GCAACGGCAACAGCA---G----------CGCAAAAG-AAAATCTGCA----GAAACAGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.GTCAGACGGCATTGAAGTT......................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	1	0	0	0	0	1
...........................................CCGAAAAGGGTGAG------------------------------------AGATACT......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
..................TTG--AACAAATTGTGGAGAGCA.................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.............TGAAGTTG--AACAAATTGTGGAGAGCAA................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
....................G--AACAAATTGTGGAGAGCAAGCCG............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....AGACGGCATTGAAGTTG--AA.................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
....AGACGGCATTGAAGTTG--AAC................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
.GTCAGACGGCATTGAAGT.......................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
.................GTTG--AACAAATTGTGGAGAGC..................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
....................G--AACAAATTGTGGAGAGCA.................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................ACA-GCAACGGCAACAGCA---G----------...............................	19	16	0.06	1	0	0	0	0	0	1

droVir3

TGTCAGACGGCATTGAAGTTG--AACAAATTGTGGAGAGCAAACCGAGAAGGGTGAG------------------------------------AGATACTTTA---------------------------ACACATGCACACATACA--------GGCAGGAGTGCATCT---TGTATATG-------TAT-------------------------------TACGAAAATATTAAGTGCCG---CAAAAGACGA--A-ACAAAAAGAATT-AGACTCTTAGGAGATGCGACAACGGGGCAGTCAAACCGCAAAAGCAGCAGCAGCAGCAGCAGCAGAGGCGCAAAGCGCAAAAT-AAAATCTGCA----GAAACAGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................G--AACAAATTGTGGAGAGC..................................................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGTCAGACGGCATTGAAGTT......................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TGTGGAGAGCAAACCGAGAAGGA.....................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TG--AACAAATTGTGGAGAGC..................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TCAGACGGCATTGAAGTTG--A..................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................G--AACAAATTGTGGAGAGCAAACCGAGA.........................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATTGAAGTTG--AACAAATTGTGGA......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGTCAGACGGCATTGAAGTTG--AACAAAT............................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TGAAGTTG--AACAAATTGTGGAGAGC..................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ACACATACA--------GGCAGGAGTGC....................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................ATTGTGGAGAGCAAACCGA...........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TG--AACAAATTGTGGAGAGCAAACC.............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TCAGACGGCATTGAAGTTG--AACAA..............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....AGACGGCATTGAAGTTG--AAC................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................G--AACAAATTGTGGAGAGCA.................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.GTCAGACGGCATTGAAGT.......................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATTGAAGTTG--AACAAATTGTGGAGAGC..................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................ATG-------TAT-------------------------------TACGAAAATATTAAGT............................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATTGAAGTTG--AACAAATTG..........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
TGTCAGACGGCATTGAAGTTG--...................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.GTCAGACGGCATTGAAGTT......................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GTTG--AACAAATTGTGGAGAGCAAAC..............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................GCAAAAGCAGCAGCAGCAGCAG...............................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0

droGri2

TGTCAGACGGCATTGAAGTTG--AACAAATTGTGGAGACCAAGCCAAGAAGGGTGAG------------------------------------ACATCCTACAA----------------AC--------ACACACTCACACACA--CATTTACACTTGCAAGCATAC-TGCATACACACACATTTAGAATACGTAGAAACAAAGATGTACATATAATGTTATAAGAAAATATTAAGTGCGG---CCACAGACGACGA-ACAAAAAGAATT-AGACTTATAAAAGATGCGACAACAGGGCAGTCAAACACCA------GCAGCAGCAGCAGCA---G------------CAAAAG-AAAATCTGCA----GAAACAGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................................................................................................................................................................................................................................................................AAAGATGCGACAACAGGGCAGTCA.........................................................................	24	1	1.00	1	1	0
...........ATTGAAGTTG--AACAAATTGTGGAGACC..................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0
...........................AATTGTGGAGACCAAGCCAAGAAGGA.....................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0
..................................................................................................................................................................................................................................................................................................................ACACCA------GCAGCAGCAGCA................................................	18	20	0.05	1	1	0
.....................................................................................................................................................................................................................................................................................................................CCA------GCAGCAGCAGCAGCA---G------------CA...........................	21	20	0.05	1	1	0
......................................................................................................AA----------------AC--------ACACACTCACACACA--.......................................................................................................................................................................................................................................	19	20	0.05	1	1	0

droWil2

TGTCAGACGGCATTGAAGTTG--AACAAATCGTGGAGAGCAAGCCCAGAAGGGTAAGTACA-------CTCCAAAAGGGGAG-----------ACATACTATCA-----TTCATATATGTATAAATGGGCATACATATGT------ATAC--A------GG------------------GTGATCCAA-------------ATTGATGTTCTTGGAATATGATTTTTCATTTTT-------G-------------------AAAAATAACT-GCATTTT--GGACACCC----------------TATATTA------------------------A------------TATATGAACACTCTACA----TACATATA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................TG--AACAAATCGTGGAGAGC..................................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	0	1	4	0	0
...........................................................................................................................................................................................................................................................................AACT-GCATTTT--GGACACCC----------------TAT......................................................................	22	1	4.00	4	0	2	0	2	0
TGTCAGACGGCATTGAAGT.......................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	3	0	0
.GTCAGACGGCATTGAAGTT......................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	3	0	0
.................GTTG--AACAAATCGTGGAGA....................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	3	0	0
...................TG--AACAAATCGTGGAGAGCAAG...............................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0
.....GACGGCATTGAAGTTG--AACAAAT............................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0
..............GAAGTTG--AACAAATCGTGGAGAGCAA................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0
TGTCAGACGGCATTGAAGTT......................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	1	0	0
...........ATTGAAGTTG--AACAAATCGTGGAGAGCA.................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	2	0	0
...........ATTGAAGTTG--AACAAATCGTGGA......................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	1	0	0
.GTCAGACGGCATTGAAGTTG--AAC................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	1	0	0
.................GTTG--AACAAATCGTGGAGAGC..................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
................AGTTG--AACAAATCGTGGAGAGC..................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
....................G--AACAAATCGTGGAGAGCAAG...............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
........................ACAAATCGTGGAGAGCAAGCCCA...........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.................GTTG--AACAAATCGTGGAGAGCAA................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
................AGTTG--AACAAATCGTGGAGA....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................CT-GCATTTT--GGACACCC----------------TATT.....................................................................	21	1	1.00	1	0	1	0	0	0
............TTGAAGTTG--AACAAATCGTGGAGAGCA.................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
.............TGAAGTTG--AACAAATCGTGGAGAGCA.................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................ATTA------------------------A------------TATATGAACACTCTACA----TACATAT.	29	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................ACT-GCATTTT--GGACACCC----------------TAT......................................................................	21	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................ATAACT-GCATTTT--GGACACCC----------------T........................................................................	22	1	1.00	1	1	0	0	0	0
..........CATTGAAGTTG--AACAAATCGT.........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.....GACGGCATTGAAGTTG--AACAA..............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
...................TG--AACAAATCGTGGAGAGCAA................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.................GTTG--AACAAATCGTGGAGAGCAAGCCCA...........................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
..............................CGTGGAGAGCAAGCCCAGAA........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
...........................AATCGTGGAGAGCAAGCCCA...........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.......CGGCATTGAAGTTG--AACAAATCGT.........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
...................TG--AACAAATCGTGGAGAGCAAGC..............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
........GGCATTGAAGTTG--AACAAATCGT.........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.............TGAAGTTG--AACAAATCGTGGAGAGCAA................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
............................................CCAGAAGGGTAAGTACA-------CTCCAAAAGG............................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
....................G--AACAAATCGTGGAGAGCA.................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.GTCAGACGGCATTGAAGTTG--AACAA..............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.......CGGCATTGAAGTTG--AACAAATCGTGGA......................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
.GTCAGACGGCATTGAAGTTG--A..................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
TGTCAGACGGCATTGAAGTTG--A..................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
....................G--AACAAATCGTGGAGAGCAA................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.....................................................TAAGTACA-------CTCCAAAAGGGGAG-----------A............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
..............GAAGTTG--AACAAATCGTGGAGAGCA.................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
..............GAAGTTG--AACAAATCGTGGAGAGC..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
...........ATTGAAGTTG--AACAAATCGTGGAGAGC..................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.....GACGGCATTGAAGTTG--AACA...............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
TGTCAGACGGCATTGAAGTTG--AACA...............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
........GGCATTGAAGTTG--AACAAATC...........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
...........ATTGAAGTTG--AACAAATCGTGGAGAGCAA................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
...................TG--AACAAATCGTGGAGAGCA.................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................AACT-GCATTTT--GGACACCC----------------T........................................................................	20	1	1.00	1	0	0	1	0	0
........................................................................................................................................................A------GG------------------GTGATCCAA-------------ATTGATGTTCT......................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0

dp5

TGTCGGACGGCCTCGAGGTTG--AGCAGATCGTGGAGAGCAAGCCGAGAAGGGTGAGTACTCGTAGTCCTCCGGG---G-CGCTATATTTTATATAT---------------------TTACATATGTACATGCATACAC------ACAT--ACATACATAAGTACATGTGCATGTGTATGCATACAGAATAC-------------------------------AGAAAGTAATAAGTGCGGCGGCAAAAGACAA---CCAACCGAAAATTAAGAATTATAAAAGATTCGAT---GGGGAAACAAAAGAGCAAAAGAAAC-------------------------------------------GGG----GCAACAGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........GGCCTCGAGGTTG--AGCAGAT............................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........GGCCTCGAGGTTG--AGCAGATCGT.........................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0
....................G--AGCAGATCGTGGAGAGC..................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................GGTTG--AGCAGATCGTGGAG.....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................GCAGATCGTGGAGAGCAAGC..............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................GATCGTGGAGAGCAAGCCGAGAAG.......................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................GTGGAGAGCAAGCCGAGA.........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................GATCGTGGAGAGCAAGCCGAGA.........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........GGCCTCGAGGTTG--AGCAGATCGTGGA......................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................AGATCGTGGAGAGCAAGC..............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................CGTGGAGAGCAAGCCGAGAAG.......................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........CTCGAGGTTG--AGCAGATCGTGGAGAG...................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........GCCTCGAGGTTG--AGCAGATCGTGGA......................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TGTCGGACGGCATCGAGGTTG--AGCAGATCGTGGAGAGCAAGCCGAGAAGGGTGAGTACTCGTAGTCCTCCAGG---G-CGCTATATTTTATATAT---------------------TTACATATGTACATACATCCAC------ACAT--ACATATGTAAGTACATGTGCATGTGGATGCATACAGTATAC-------------------------------AGAAAGTAATAAGTGCGGCGGCAACAGACAA---CCAACCGAAAATTAAGAATTATAAAAGATTCGAT---GGGGAAACAAAAGAGCAAAAGAAAC-GGGGCAACA------G------------AGACAG-AAA----GAAGCAAGAGAC--A	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........ATCGAGGTTG--AGCAGATCGTGGAGA....................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
.........GCATCGAGGTTG--AGCAGATCGT.........................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................................GTAAGTACATGTGCATGTGGATGC....................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
.............CGAGGTTG--AGCAGATCGT.........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
TGTCGGACGGCATCGAGGTTG--AGCA...............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................AGCAGATCGTGGAGAGCAAGC..............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.GTCGGACGGCATCGAGGTTG--AGCA...............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..........CATCGAGGTTG--AGCAGATCGT.........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droAna3

TGTCGGACGGTATCGAGGTCG--AGCAGATAGTGGAGAGCAAGCCGAGGAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.GTCGGACGGTATCGAGGTCG--AGC................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	2	0
.GTCGGACGGTATCGAGGTCG--AGCAG..............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............TCGAGGTCG--AGCAGATAGT.........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
........GGTATCGAGGTCG--AGCAGATA...........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.........................CAGATAGTGGAGAGCAAGCCGAGGAG.......................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
..........................AGATAGTGGAGAGCAAGCCGAGGA........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............CGAGGTCG--AGCAGATAGTGGA......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...........ATCGAGGTCG--AGCAGATAGTGGAG.....................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0
........GGTATCGAGGTCG--AGCAGATAGTGGA......................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
..................TCG--AGCAGATAGTGGAGAGCAAGC..............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.........................CAGATAGTGGAGAGCAAGCCGAGG.........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....................G--AGCAGATAGTGGAGAGCAAGCCG............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....GGACGGTATCGAGGTCG--AGCG...............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0

droBip1

TGTCGGACGGCATCGAGGTCG--AGCAGATAGTGGAGAGCAAGCCGAGGAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGTCGGACGGCATCGAGGTCG--AGCAATTGGTGGAGACCAAGCCAAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGTCGGACGGCATCGAGGTCG--AGCAAATGGTGGAGAGCAAGCCGAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGTCGGACGGCATCGAGGTCG--AGCAAATGGTGGAGAGCAAGCCGAGGAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGTCGGACGGCATCGAGGTCG--AGCAGTTGGTGGAGAGCAAGCCGAGGAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGTCGGACGGCATCGAGGTCG--AGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TGTCCACCAGCAGCAACATGAGGAACAAATCG--------------------------ACTTGCTGTCCACTCAA---C-CAACTCAGGTGAGAGATAA---------------------TCTGGGAGACACACAGACAC------AAAC--ACACACACAATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGTCGGACGGCATCGAGGTCG--AGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................TTGGTGGAGAGCAAGCCGAGAAGGA.....................................................................................................................................................................................................................................................................................................................................	25	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	1	0	0	0	0
.............................TGGTGGAGAGCAAGCCGAGAAGGA.....................................................................................................................................................................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..........................AATTGGTGGAGAGCAAGC..............................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...........ATCGAGGTCG--AGCAATTGGTGGA......................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...........ATCGAGGTCG--AGCAATTGGTGGAG.....................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
TGTCGGACGGCATCGAGGTCG--AG.................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................CAATTGGTGGAGAGCAAGCCGAGAAG.......................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0
...........................ATTGGTGGAGAGCAAGCCGAGAAGGA.....................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................GAGCAAGCCGAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................ATTGGTGGAGAGCAAGCCGAGAAG.......................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........CATCGAGGTCG--AGCAATTGGT.........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................AGCAATTGGTGGAGAGCA.................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................AATTGGTGGAGAGCAAGCCGA...........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GGTGGAGAGCAAGCCGAGAAGGGT....................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................ATTGGTGGAGAGCAAGCC.............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TGTCGGACGGCATCGAGGTCG--AGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........ATCGAGGTCG--AGCAATTGGTG........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TGTCGGACGGCATCGAGGTCG--AGCAATTGGTGGAGAGCAAGCCAAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............CGAGGTCG--AGCAATTGGTGGAGA....................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1
...........................ATTGGTGGAGAGCAAGCCAAG..........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
............TCGAGGTCG--AGCAATTGGTGGAGA....................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
...........ATCGAGGTCG--AGCAATTGGTGGAG.....................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0
.............CGAGGTCG--AGCAATTGGTG........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0

droYak3

TGTCGGACGGCATCGAGGTCG--AGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................G--AGCAATTGGTGGAGAGCAAGC..............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................GGTGGAGAGCAAGCCGAGAAGGGT....................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................CG--AGCAATTGGTGGAGAGCAAGCC.............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................ATTGGTGGAGAGCAAGCCGAGAAG.......................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................TGGTGGAGAGCAAGCCGAGAAGGA.....................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........ATCGAGGTCG--AGCAATTGGTGGAGAGC..................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........ATCGAGGTCG--AGCAATTGGTGGA......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

TGTCGGACGGCATCGAGGTCG--AGCAGTTGGTGGAGAGCAAGCCGAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................GGTCG--AGCAGTTGGTGGAGAGCA.................................................................................................................................................................................................................................................................................................................................................	23	1	23.00	23	0	0	0	0	0	0	23
........GGCATCGAGGTCG--AGCAGTTGGTGG.......................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	3
...........................GTTGGTGGAGAGCAAGCCGA...........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
............TCGAGGTCG--AGCAGTTGGTGG.......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...........ATCGAGGTCG--AGCAGTTGGTGGAG.....................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
...........................GTTGGTGGAGAGCAAGCCGAGAAGGA.....................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...................CG--AGCAGTTGGTGGAGAGCAAGC..............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0

dmo_439

scaffold_6308:2683912-2684062 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads