ID:

dmo_433

 Coordinate:

scaffold_6308:1760337-1760487 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.4 -2.4 -1.5

Flybase annnotation

exon [dmoj_GLEANR_11066:1]; CDS [Dmoj\GI11156-cds]; intron [Dmoj\GI11156-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+
mature
  1. dmo_433  scaffold_6308:1760422-1760448 +
  2. scaffold_6308:2923558-2923584 +
  3. scaffold_6473:4373131-4373157 +
  4. scaffold_6473:9567602-9567628 -
  5. scaffold_6473:15184296-15184322 +
  6. scaffold_6496:1917125-1917151 +
  7. scaffold_6500:2612610-2612636 +
  8. scaffold_6500:15813359-15813385 +
  9. scaffold_6500:16478453-16478479 +
  10. scaffold_6500:22524122-22524148 +
  11. scaffold_6540:13363527-13363553 +
  12. scaffold_6540:18184444-18184470 +
  13. scaffold_6540:23647584-23647610 +
  14. scaffold_6540:26942161-26942187 +
  15. scaffold_6540:27742319-27742345 +
  16. scaffold_6540:31641297-31641323 +
  17. scaffold_6540:31826545-31826571 +
  18. scaffold_6654:2401845-2401871 +
  19. scaffold_6680:3346672-3346698 +
  20. scaffold_6680:11468120-11468146 +
star
  1. dmo_433  scaffold_6308:1760372-1760392 +
  2. scaffold_6308:2697802-2697822 +
  3. scaffold_6473:4081957-4081977 +
  4. scaffold_6473:7430042-7430062 +
  5. scaffold_6473:15315272-15315292 +
  6. scaffold_6496:896085-896105 +
  7. scaffold_6496:13329244-13329264 +
  8. scaffold_6496:18721098-18721118 +
  9. scaffold_6496:21514741-21514761 +
  10. scaffold_6496:25823842-25823862 +
  11. scaffold_6500:16478427-16478447 +
  12. scaffold_6540:2184584-2184604 +
  13. scaffold_6540:14213127-14213147 +
  14. scaffold_6540:14608869-14608889 +
  15. scaffold_6540:14739798-14739818 +
  16. scaffold_6540:27768854-27768874 +
  17. scaffold_6540:30996225-30996245 +
  18. scaffold_6680:6964354-6964374 +
  19. scaffold_6680:9467216-9467236 +
  20. scaffold_6680:20592523-20592543 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGCATTTGCTGGATTAATTGTGTGTTGGCTGGCAGTTTGTCAACCGCAAGGTAAATATTTTTGTGCCTCGGCGCAGCAGCACTAACAACAACAGCAACAGCAACAGCAACAACAACAATAACAACAACAGCAGCAACAGCAACAGCAGCAACAGCAACAACAGCCATAACAATAACAACAATAGCGAAACGAACAGCGGGCAGACAGGATAATGACACCAATACACCTACACACACACACCCACACACACA
*************************************************************************************............................................((.((..........)).)).............***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 M046
female body
 M060
embryo
 V056
head
..............................................................................................................................................................................ACAACAGCAGCGTAACGAACAGCG..................................................... 24 3 3 0.33 1 1 0 0 0
.......................................................................................................................................ACAGCAACAGCAGCAACAGCAACAACA......................................................................................... 27 0 20 0.05 1 0 1 0 0
.....................................................................................CAACAACAGCAACAGCAACAG................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0
...............................................................................................................................CAGCAGCAACAGCAACAGCA........................................................................................................ 20 0 20 0.05 1 0 0 0 1
..............................................................................................................................ACAGCAGCAACAGCAACAGCAGCAACA.................................................................................................. 27 0 20 0.05 1 0 1 0 0
...........................................................................................................................ACAACAGCAGCAACAGCAACAGCAGC...................................................................................................... 26 0 20 0.05 1 0 0 1 0
..........................................................................................................................AACAACAGCAGCAACAGCAACAG.......................................................................................................... 23 0 20 0.05 1 0 1 0 0
..................................................................................................................ACAATAACAACAACAGCAGCA.................................................................................................................... 21 0 20 0.05 1 0 1 0 0
.............................................................................................................................AACAGCAGCAACAGCAACAGCAGC...................................................................................................... 24 0 20 0.05 1 0 1 0 0

Anti-sense strand reads

GCGTAAACGACCTAATTAACACACAACCGACCGTCAAACAGTTGGCGTTCCATTTATAAAAACACGGAGCCGCGTCGTCGTGATTGTTGTTGTCGTTGTCGTTGTCGTTGTTGTTGTTATTGTTGTTGTCGTCGTTGTCGTTGTCGTCGTTGTCGTTGTTGTCGGTATTGTTATTGTTGTTATCGCTTTGCTTGTCGCCCGTCTGTCCTATTACTGTGGTTATGTGGATGTGTGTGTGTGGGTGTGTGTGT
*****************************************************************************************............................................((.((..........)).)).............************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V110
male body
............................................................................................................................................................TGTTGTCGGTATTGGTAATGG.......................................................................... 21 3 14 0.07 1 1
.................................................................................................GTCGTTGTCGTTGTTGTTGTTATTG................................................................................................................................. 25 0 14 0.07 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6308:1760287-1760537 + dmo_433 CGCA-----------------------TTTGCT-GGATT--AATTG--TGTGTTGGCTGGCAG-----------------------TTTGTCA-------ACCGCAAGGTAA----------------------------ATATTTTTGTGCCTCGGCGCAGCA----------------GCACT-------------------------------AACAACAACAGCAACAGCAAC---------------AGCAACAA-----------------------------------------------------------------------CAACAATAACAAC-------AACAGC---------------------AGCA-------------------------------------ACAG--------------------------------CAACAGCAGCAACAGCAA-------------------CAACA---------------------------------------G------------------------CCATAACAA--------TAACAACAAT------A---GCGAAA-----------------CGAACAGCGGGCAGAC--------------------------------------------AGGAT----AATGAC---------------A--CCA--------------ATA---------------CACCTAC----------A----CACACACAC---------------CCACACA-----------CACA
droVir3 scaffold_12726:117224-117474 + dvi_1803 CGCA-----------------------TTTGCT-GGATT--AATTG--TGTGTTGGCTGGCAG-----------------------TTTGTCA-------ACCGCAAGGTAA----------------------------ATATTTTTGTGCCTCGGCGCAG-------------------CGCT-------------------------------AACAA--------------------------------------------------------------------------CAATAGCAACAACA------------------C---------------CAAAAGCA-AC---------------------AACG----------------------------------------ACAGCAACAAGAGGAA--------CAACAGCAACAGCAG-------------------------------------------------------------CAAT------------------------------------------AACAA--------TAGCAACAAT------G---GCAGCA-----------------CGAACAGCGGGTAGAC--------------------------------------------AGGAT----AATGAC---------------A--CCAAAACACACACACCTACACA-----TA------CATGTAC----------A----CACACACAC---------------ACATACG-----------CACA
droGri2 scaffold_15203:2333855-2334063 + CGCA-----------------------TTTGCT-GGATT--AATTG--TGTGCTGGCTGGCAG-----------------------TTTGTCA-------ACCGCAAGGTAA----------------------------ATATTTTTGTGCCACGGCGCAC-------------------CGCT-------------------------------AACAA--------------------------------------------------------------------------CAGCGACAACAACAACAACA------------G---C------AA-------------------------------------CG----------------------------------------AC-----------------------------------------------AGCAA-------------------CAGCA---------------------------------------A------------------------T---AACAA--------TAATGACAAT------AGC---CGTA-----------------CGAACAACGGGTAGAC--------------------------------------------AGGAT----AATGAC---------------A--CCA--------------ACA---------------CTCTCAC----------A----CACACACAC---------------ACACACA-----------CACA
droWil2 scf2_1100000004902:11782482-11782678 + TAAC----------------------------------------TC--TATGTTG-CCGCCAG-----------------------TTGTCCA-------ACAGCAA-TCAA----------------------------AT--------------------------------ACC------------------GGCGATAACAACAACAC------CAG------------------------------C------------------ACCAGCA--------------------------------------------------G---------CAGCAGCA-------GCAAC------------------AACA---------------------------------ACAAC-AACAGCAGTAACAATGCCAAC---A------------------------------------------------------------------GTAGCAGCAGCAACAGCA--------------------------------------------------------ACAATAGCCATGCAAATACGGG---CAGCAA---------------------------------------------------TACCAACAGC---A--------------------ACAGCAA-----------------------------------------------------------------------------------CAATAACAACAAC-----------AATA
dp5 XR_group8:2357695-2357931 + CACA-----------------------ATGGCC-GCAA----------CA----------------------------------------------------------------------------------------------------------------------------------TCAA----------------------CTCCTAGGCCATCAACGCCCACGGGACCAATAGCTGGGCCGCCGCC------------------AACGACTCCACAACATCTTCAACAACAGCAGCAACAGCAGCAGCA------------G---C------AG-------------------------------------CAAC--AA------------CAGCA----------GCAAC-AACAACAAC-------------------------------------------------------AACAGCAGCA--ACA---------------------------------------ACAACAGCATATGTTGCACCAACATTCGCATC----------------------------------------------------------------CGCATG------------------------------------------------------------------GCCAGCA----------------------------------------TCC------------G----CACGCACATCCACATCCGCATCACCTGCAGC-----------CGGG
droPer2 scaffold_36:192732-192957 + TTGT-----------------------AT----------------------TTTTGCTGTTTA-----------------------ATCGCTA-------GCCGCCAGCCAA----------------------------GT--------TAT-------------------TTACATC--GACCGTCG------GGCAACAACAACAACAA------CAA------------------------------A------------------AACAACA--------------------------------------------------G---C------AACGAC-------------------------------------------------------------------------------------------------------------AACAGTTACAGCAACAAGAA-------------------CAACA---------------------------------------A------------------------CCACAACAAGTCGAGTCT---------GGCGAAAAATGTTTTAC---AATTAAAATTACGCGCGCAGCAGGCAAAA--------------------------------------------AGTATCTGG------------------------CAG--------------ATA---------------CGCAAAC----------A----CACACATAC---------------GCACCCA-----------TACA
droAna3 scaffold_13337:8965785-8966014 - GTAC-----------------------CTCGGC-GGGCA--GCTTG--GGTGCTG------------CGA---------------------GCGGTAGCAGTGT--GGGTGA----------------------------ATCGCTGTGGAG--CAGTAGCGAA----------------GCGC-------------------------------------------------------------------------------------------------AGCAGTTCCAGCAGCAGCAGCAACAACAGCAGCA------------GGCCCAACAGCAGCAGC-------AACAGCAACACCACCACCACCAGCAACAACAA-----------------CAGCTCCAGCAG-------------------------------CAG---------------------CAGC-------------------------A---GCAACAGGCGCAG------------------------------------------------------CAG--------C------------------------------------------------------------------------------------------AGCAGC---A--------------------ACA------------GCA--------------GCAC---------------CAT------------------------------------CACCACCACC--A-----------GCAA
droBip1 scf7180000396431:1371421-1371671 - TCAA-----------------------TTAGTG-G--TT--TG-------------CTGTGAG-----------------------T-TTTTA-------GCTGCAAGCTTT-----------------TTTTGTTGTTGTTGTTTTTGTCATTTGGCCTTT--------AATCACA------------------GACGGCGGCAGCAACAT------CAG------------------------------A------------------AACAACA--------------------------------------------------G---A------AACATCATCAGC-AGCAGCAGC---------------AGCAGC--AA------------CACCA----------GCCAC-TACTGCAA-----------------------------------------C--------------TGCAACAGCA--ACAGCAAAAGCAAAAGCAA---------CC---GCAG--------------------------------------------------------------------------------------------------------------------------------------CATCAGCAGC---C--------------------AAAGCCACTGCTG--CTA--------------CTT---------------CTTCTTC----------T----TCTTCGCGC---------------TAACAAA-----------CACA
droKik1 scf7180000302621:77250-77452 + TGAA-----------------------ATGGAA-GCAG----------CT-------ATACGCTCCACTTCAGTGCAGGTCGGTGCTCCGCCG-------CCC-----------------------------------------------------------------------ACA------------------AACAACAACAACAAC------AACAG------------------------------C------------------AGCAGCA--------------------------------------------------G---C------AACAACACAGGC-AGCAGCAGCACCAGC-----------------AGTAATAGCAGCAGCAGTA----------GCAAC-AACAACAA-----------------------------------------CAAC-------------------------A---ACAACAGCAGCAG---------CA---GCAG-----------------------------------------------------------------CA---------------------------------GTAGCA--------------------------------------------GCGGC----AGCAAC---------------A--AT--------------------------------------------------------------------------------AACACA-----------CCCA
droFic1 scf7180000453901:145267-145469 - GTGGTGGTGCGCAGTTATCGCCGCAAAG----------C--AACCA--CA---------------------------------------------------------------------------------------------------------------GCA----------------GCAG----------------------CAACAC------C---ACCACCACCAGCAAT---------------ACCAACAA--------------------------------------------------------------CTCTAGTTCCAACAACAACAAC------A-ATAAT---------------------AACAA-----------------CAACACCAGCAA-------------------------------CAACAATAACAACAATACAAATAATAATAA-------------------TA---------------------------------ACAA------------------------------CCATACGAA--------T---------AATAATAATA--------------------------------------------------------------------------------------------------------------------ATA--------------ACAC---------------AAC--------------TAATCAAAAACAA---------------GGACAC----------------
droEle1 scf7180000491023:1064101-1064354 - GCAT-----------------------TC-ACACCGCCAGCAAATGTGAGTGGCGGC---------------------------------------GGCGGCGG--CAGTGAATTGCTGACCAGGCGCA-----------GGGCTTTGGCAC---------------------------------------------------------C------ACC---GCCAGCTCCGCCAGT---------------T--------------------------------------------------------------TCTGCCACACCACCTGGTACACCTGCAAC------A-ATATC---------------------ATCAT-----------------CATCATCAGCAG-------------------------------CAGCAGCAGCAG-------------------------------------------------------------------CA---GCAGCAGCAG------------------------CAATGCCTG--------C------------------------------------------------------------------------------------------------------------------AGC---------------AGCACACAACACTACCAGCAACGCA-----TACGAAATGTTGTA------CTCCCACAACCAAAAACAC---------------CCACACC-----------CACA
droRho1 scf7180000771375:3937-4140 - GGCG-----------------------CT----------------------------------------------------------TTATCA-------CCCGCAA-----------------------------------------------------------------------CAACGG----------------------CAGCAACACGAACGACAAGCACGCCAGCAACAGCAGCAGCACCACC------------------A---------------------------------------------------------------------------------GCAAC------------------ACCA---------------------------------CCAAC-GGCAGCAGCAACAGAGTCAAC---A------------------------------------------------------------------GCAACAGCTGCGACAGCAGCAA--------------------------------------------------------------------------------------------------------------------------------------CATCAGCAGC---A--------------------GCAGCAGTAGCA---GCA--------------ACACATCGCG-----------------------CTGTAGTCACACACAT---------------TGACACGCCCCCAATCCAGATA
droBia1 scf7180000302292:1443433-1443631 + GGCG-----------------------CT----------------------------------------------------------TTATCA-------CCCGCAA-----------------------------------------------------------------------CAGCGG----------------------CAGCAACACGAACGACAAGCACGCCAGCA--------------------------------------------------------------------------------ACAGCA------ACAGCAGCAGCAGCAGC----------AAC---------------AGCAACA---------------------------------CCAAC-GACAGCAGCAACAGAGTCAAC---A------------------------------------------------------------------GCAACAGCTGCGACGGCAG-----------------------------------------------------------------------------------CAA---------------------------------------------------CATCATCAGC---A--------------------GCAGCAGCAGCA---GCA--------------ACACATCGCG-----------------------CTGTAGTCACACATAC---------------AGGCACA-----------CATT
droTak1 scf7180000415394:661251-661477 + CGTA-----------------------GAG--------------AA--AAATTTG---TGTTGTCTGC-------------------TCGCGGGCTAGATAA-------TAA----------------------------TT--TTTTTTACCCCAGTGAAAAT----------------GTGCA-AAGTGCCAAGACAACAGAAAAAGA------AACAG------------------------------C------------------A--------------------------------------------------------G---T------TGCAAC------A-ACAGT------------------AGCAGCA-------------------------------------ACATCAGC--------------------AGCAGCAGCA---------ACAGCAA-------------------CAGCA---------------------------------------G------------------------CAACCTTAA--------G---------CT-------------------------------CGAAAAAGGAGGAGGC--------------------------------------------GGGGC----AG--GCGCCATTGT---------------------------------------------CAT----------TGCCA----TACTCAAAC---------------CCAAACC-----------CAAA
droEug1 scf7180000409271:347867-348121 + GAT-----------------------------------C--AACGA--CATTCTGGCGGGCAG-----------------------TGCAGCG-------GCCGC----------------------------------------------------------------TTTTTACA------------------AGCAACAGCAGCAGCAG------CAG------------------------------C------ACCATCAGCAGCAGTTGCACCACCA------------------------------------------------------CAGCAAC------A-AC---------------------AACAACAA-----------------CAATTCGGGATC-------------------------------CAGCGGTGGCAGCAGTCCCGCTCACAACAAC--------AACAACAACA--ATA---------------------------------------------------------------------ATAA--------T---------AGCGAAAACTTTGAGAC---ACCAAG---------------------------------------------------TGGCGGTGTT---GGCGGTGC----CT-------------------------TGCCACCTGCC---------------------------CTGCACCTTCCA----CAACCACAT---------------CCACATT-----------CACA
dm3 chrX:9747895-9748159 - TAAT-----------------------GGGGT---------GGTGG--CATTGCGGCAGGTGCCTCAC----------------------TTG-------ACCACAAGGCA-----------------------------GCAGCTTTGTGCT-------------------CTACAGG--CATTAACA------AACAGCAGCAGCAGCAG------CAA------------------------------C------AA-----------------------------------------------------------------------C-------------------------------------------AACAAC---------------------------------AAC-AACTGCAACAACATTTG--------------------CAATC------AG--T---CGCCGAACGGCAGCAA--TAACA---------------------------------------A------------------------CAACAGCAGTTTGATGAT---------GACGATG---ACGA-GCAACCGCTAACACCAACCGAGCTGCAACCAAATGA----------CCAATG-----------------------------AGCCAA------------------------CCA--------------CTG-----------------CCCAC----------A----CACACACTC---------------ACACAAT-----------CACA
droSim2 x:16405781-16406021 + GAT-----------------------------------C--AACGA--CATTCTGGCGGGCAG-----------------------TGCGGCG-------GCCGC----------------------------------------------------------------TTTCTACA------------------AGCAGCAGCAGCACC------ACCAG------------------------------C------------------AGTTGCACCACCA---------------------------------------------------------CAAC------A-AT---------------------AACAACAA-----------------CAATTCGGGCTC-------------------------------CAGCGGCGGCAGCAGTCCCGCTCACAGCAA-------------------CAACA---------------------------------------A------------------------CAACATTAA--------T---------GGCGATAACTGTGAGGC---AGCCAA---------------------------------------------------TGTTGCTGGC---GTCGGTGC----CC-------------------------TGCCATCCGCC---------------------------CTGCACCACCCACAACCGCATCCGC---------------CCACGCA-----------TCCG
droSec2 scaffold_17:1138805-1139045 + GAT-----------------------------------C--AACGA--CATTCTGGCAGGCAG-----------------------TGCGGCG-------GCCGC----------------------------------------------------------------TTTCTACA------------------AGCAGCAGCAGCACC------ACCAG------------------------------C------------------AGTTGCACCACCA---------------------------------------------------------CAAC------A-AT---------------------AACAACAA-----------------CAATTCGGGCTC-------------------------------CAGCGGCGGCAGCAGTCCCGCTCACAGCAA-------------------CAACA---------------------------------------A------------------------CAACATTAA--------T---------GGCGATAACTGTGAGGC---AGCCAA---------------------------------------------------TGTTGCTGGC---GTCGGTGC----CC-------------------------TGCCATCCGCC---------------------------CTGCACCACCCACAACCGCATCCGC---------------CCACGCA-----------TCCG
droYak3 3L:18133544-18133784 + CACA-----------------------TTTATT-GTAA----------TT-------GTTGTTGCTGCTGCT-------------------GCGTTGGCTACTTTTGTTTAT----------------------------TTACTTTTTGGGGAAGGCGCAA----------------CAGCAG----------------------CAGCAACAAGAACAACAAGAGCAGCAACA--------------------------------------------------------------------------------GCCATT------AC---AACAACGGCCAG------A-GCTAC---------------AACAAAA---------------------------------ACATTGGGCAATCACAATCGAATCAAATCAA------------------------------------------------------------------ACAAAATGCGCGAAAATAGCGC--------------------------------------------------------------------------------------------------------------------------------------CTCTGCCGAA---A--------------------GAAACAACAACA---GCA--------------ACGC---------------CTTTAA----------A----AATAG---------------------ACAC----------------
droEre2 scaffold_4644:2423971-2424269 + CGT-------------------------TTGCA-GGAC---AAATG--TGTGATGCCGG---------------------------------G-------CTCGCAA----------------------------------------------AAGACGCAGCAAATATTCAT----------------------------------GACGT------C---ACAAATGCCGCC---------------------------------------------------------------------------------------------------------------------GACATCGACGCTGGC-----------------AGTGGTAGCAACGACAATG----------GCCAC-AACAGCGA-----------------------------------------CCAC-------------------------A---ACAACAAGTGCAGCGGCAGCCAAAACA---------ACAATAGCATCCATTGCAACCATCGCCACAATAA--------CAA------------------------------------------AGTCGAAGGCAAAAGCTAAAGCGATTTCAAAGAGCCATTAAATGTTAATGCCGAAAGCAGGAT----AGTG-------------------------CATCTCGCT---------------------------CTCTTTCCC--G----CA-----------------------GACACACACCGAAACACAAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CGCA-----------------------TTTGCT-GGATT--AATTG--TGTGTTGGCTGGCAG-----------------------TTTGTCA-------ACCGCAAGGTAA----------------------------ATATTTTTGTGCCTCGGCGCAGCA----------------GCACT-------------------------------AACAACAACAGCAACAGCAAC---------------AGCAACAA-----------------------------------------------------------------------CAACAATAACAAC-------AACAGC---------------------AGCA-------------------------------------ACAG--------------------------------CAACAGCAGCAACAGCAA-------------------CAACA---------------------------------------G------------------------CCATAACAA--------TAACAACAAT------A---GCGAAA-----------------CGAACAGCGGGCAGAC--------------------------------------------AGGAT----AATGAC---------------A--CCA--------------ATA---------------CACCTAC----------A----CACACACAC---------------CCACACA-----------CACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG--------------------------------CAACAGCAGCAACAGCAA-------------------CAACA---------------------------------------.........................................................................................................................................................................................................................................................................................27200.051100000
..........................................................................................................................................................................................................................CAACAACAGCAACAGCAAC---------------AG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.................................................................................................................................................................................................................................................................................................................................................................CAGC---------------------AGCA-------------------------------------ACAG--------------------------------CAACAGCA..................................................................................................................................................................................................................................................................................................................................................................20200.051000100
................................................................................................................................................................................................................................................................................................................................................................ACAGC---------------------AGCA-------------------------------------ACAG--------------------------------CAACAGCAGCAACA............................................................................................................................................................................................................................................................................................................................................................27200.051100000
......................................................................................................................................................................................................................................................................................................................................................AC-------AACAGC---------------------AGCA-------------------------------------ACAG--------------------------------CAACAGCAGC................................................................................................................................................................................................................................................................................................................................................................26200.051000010
.....................................................................................................................................................................................................................................................................................................................................................AAC-------AACAGC---------------------AGCA-------------------------------------ACAG--------------------------------CAACAG....................................................................................................................................................................................................................................................................................................................................................................23200.051100000
.............................................................................................................................................................................................................................................................................................................................................ACAATAACAAC-------AACAGC---------------------AGCA-------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
...............................................................................................................................................................................................................................................................................................................................................................AACAGC---------------------AGCA-------------------------------------ACAG--------------------------------CAACAGCAGC................................................................................................................................................................................................................................................................................................................................................................24200.051100000
droVir3
CGCA-----------------------TTTGCT-GGATT--AATTG--TGTGTTGGCTGGCAG-----------------------TTTGTCA-------ACCGCAAGGTAA----------------------------ATATTTTTGTGCCTCGGCGCAG-------------------CGCT-------------------------------AACAA--------------------------------------------------------------------------CAATAGCAACAACA------------------C---------------CAAAAGCA-AC---------------------AACG----------------------------------------ACAGCAACAAGAGGAA--------CAACAGCAACAGCAG-------------------------------------------------------------CAAT------------------------------------------AACAA--------TAGCAACAAT------G---GCAGCA-----------------CGAACAGCGGGTAGAC--------------------------------------------AGGAT----AATGAC---------------A--CCAAAACACACACACCTACACA-----TA------CATGTAC----------A----CACACACAC---------------ACATACG-----------CACASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................GATT--AATTG--TGTGTTGGCTGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAG-------------------------------------------------------------CAAT------------------------------------------AACA........................................................................................................................................................................................................................................................2160.171000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAG-------------------------------------------------------------CAAT------------------------------------------............................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................ACAA--------------------------------------------------------------------------CAATAGCAACAACA------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................AACAA--------------------------------------------------------------------------CAATAGCAACAACA------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
CGCA-----------------------TTTGCT-GGATT--AATTG--TGTGCTGGCTGGCAG-----------------------TTTGTCA-------ACCGCAAGGTAA----------------------------ATATTTTTGTGCCACGGCGCAC-------------------CGCT-------------------------------AACAA--------------------------------------------------------------------------CAGCGACAACAACAACAACA------------G---C------AA-------------------------------------CG----------------------------------------AC-----------------------------------------------AGCAA-------------------CAGCA---------------------------------------A------------------------T---AACAA--------TAATGACAAT------AGC---CGTA-----------------CGAACAACGGGTAGAC--------------------------------------------AGGAT----AATGAC---------------A--CCA--------------ACA---------------CTCTCAC----------A----CACACACAC---------------ACACACA-----------CACASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TAAC----------------------------------------TC--TATGTTG-CCGCCAG-----------------------TTGTCCA-------ACAGCAA-TCAA----------------------------AT--------------------------------ACC------------------GGCGATAACAACAACAC------CAG------------------------------C------------------ACCAGCA--------------------------------------------------G---------CAGCAGCA-------GCAAC------------------AACA---------------------------------ACAAC-AACAGCAGTAACAATGCCAAC---A------------------------------------------------------------------GTAGCAGCAGCAACAGCA--------------------------------------------------------ACAATAGCCATGCAAATACGGG---CAGCAA---------------------------------------------------TACCAACAGC---A--------------------ACAGCAA-----------------------------------------------------------------------------------CAATAACAACAAC-----------AATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------TACCAACAGC---A--------------------ACAGCAA-----------------------------------------------------------------------------------CAATAA......................2511.00100010
......................................................................................................................................................................................................GATAACAACAACAC------CAG------------------------------C------------------ACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
................................................................................................................................................................................................................................................................................................................................................................GCAAC------------------AACA---------------------------------ACAAC-AACAGCAGT......................................................................................................................................................................................................................................................................................................................................................................................................2340.75300120
........................................................................................................................................................................................................................................................................................................................................................A-------GCAAC------------------AACA---------------------------------ACAAC-AACAGCAGTA.....................................................................................................................................................................................................................................................................................................................................................................................................2530.67200020
..................................................................................................................................................................................................................................................................................................................................................................AAC------------------AACA---------------------------------ACAAC-AACAGCAGT......................................................................................................................................................................................................................................................................................................................................................................................................21190.32601230
................................................................................................................................................................................................................................................................................................................................................................GCAAC------------------AACA---------------------------------ACAAC-AACAGCAGTA.....................................................................................................................................................................................................................................................................................................................................................................................................2440.25100010
..................................................................................................................................................................................................................................................................................................................................................................AAC------------------AACA---------------------------------ACAAC-AACAGCAGTA.....................................................................................................................................................................................................................................................................................................................................................................................................22120.25300120
...................................................................................................................................................................................................................................................................................................................................................................AC------------------AACA---------------------------------ACAAC-AACAGCAGTA.....................................................................................................................................................................................................................................................................................................................................................................................................21130.15200020
....................................................................................................................................................................................................................................................................................................................................................................C------------------AACA---------------------------------ACAAC-AACAGCAGT......................................................................................................................................................................................................................................................................................................................................................................................................19200.10200020
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------GTAGCAGCAGCAACAGC...................................................................................................................................................................................................................................................................................................18150.07100010
.......................................................................................................................................................................................................................................................................................................................................................................................AACA---------------------------------ACAAC-AACAGCAGTA.....................................................................................................................................................................................................................................................................................................................................................................................................19190.05100010
.................................................................................................................................................................................................................................................................................AGCA--------------------------------------------------G---------CAGCAGCA-------GCAAC------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
..................................................................................................................................................................................................................AC------CAG------------------------------C------------------ACCAGCA--------------------------------------------------G---------CAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGCA--------------------------------------------------------ACAAT.....................................................................................................................................................................................................................................19200.05100010
..........................................................................................................................................................................................................................CAG------------------------------C------------------ACCAGCA--------------------------------------------------G---------CAGCAGCA-------GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
dp5
CACA-----------------------ATGGCC-GCAA----------CA----------------------------------------------------------------------------------------------------------------------------------TCAA----------------------CTCCTAGGCCATCAACGCCCACGGGACCAATAGCTGGGCCGCCGCC------------------AACGACTCCACAACATCTTCAACAACAGCAGCAACAGCAGCAGCA------------G---C------AG-------------------------------------CAAC--AA------------CAGCA----------GCAAC-AACAACAAC-------------------------------------------------------AACAGCAGCA--ACA---------------------------------------ACAACAGCATATGTTGCACCAACATTCGCATC----------------------------------------------------------------CGCATG------------------------------------------------------------------GCCAGCA----------------------------------------TCC------------G----CACGCACATCCACATCCGCATCACCTGCAGC-----------CGGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTTGCACCAACATTCGCATC----------------------------------------------------------------.........................................................................................................................................................................................2311.0010010000000
............................................................................................................................................................................................................................................TAGCTGGGCCGCCGCC------------------AACGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
..................................................................................................................................................................................................................TAGGCCATCAACGCCCACGGGACCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
....................................................................................................................................................................................................................................GGGACCAATAGCTGGGCCGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
............................................................................................................................................................................................................................................TAGCTGGGCCGCCGCC------------------AAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
.............................................................................................................................................................................................................................................AGCTGGGCCGCCGCC------------------AACGACTCCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC-------------------------------------------------------AACAGCAGCA--ACA---------------------------------------ACAACAGCA................................................................................................................................................................................................................................................................................2940.2510100000000
...................................................................................................................................................................................................................................................................................................................................................G-------------------------------------CAAC--AA------------CAGCA----------GCAAC-AACAACAA.......................................................................................................................................................................................................................................................................................................................................................................................................2550.2010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAC-------------------------------------------------------AACAGCAGCA--ACA---------------------------------------.........................................................................................................................................................................................................................................................................................21200.1020100100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC-------------------------------------------------------AACAGCAGCA--ACA---------------------------------------AC.......................................................................................................................................................................................................................................................................................22200.1020011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC-------------------------------------------------------AACAGCAGCA--ACA---------------------------------------ACA......................................................................................................................................................................................................................................................................................23200.1020110000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAC-------------------------------------------------------AACAGCAGCA--ACA---------------------------------------AC.......................................................................................................................................................................................................................................................................................21200.1020110000000
..........................................................................................................................................................................................................................................................................................................................................................................................AAC--AA------------CAGCA----------GCAAC-AACAACA........................................................................................................................................................................................................................................................................................................................................................................................................22200.1020101000000
....................................................................................................................................................................................................................................................................................................................AGCAGCA------------G---C------AG-------------------------------------CAAC--AA------------CAGCA----------.....................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AC-AACAACAAC-------------------------------------------------------AACAGCAGC......................................................................................................................................................................................................................................................................................................................................20200.1020020000000
...................................................................................................................................................................................................................................................................................................ACAACAGCAGCAACAGCAGCAGCA------------G---......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25110.0910000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AC-AACAACAAC-------------------------------------------------------AACAGCAGCA--ACA---------------------------------------.........................................................................................................................................................................................................................................................................................24140.0710000100000
...............................................................................................................................................................................................................................................................................................................................................................................................AA------------CAGCA----------GCAAC-AACAACAAC-------------------------------------------------------AACA...........................................................................................................................................................................................................................................................................................................................................25190.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCA----------GCAAC-AACAACAAC-------------------------------------------------------AACAGC.........................................................................................................................................................................................................................................................................................................................................24200.0510010000000
.........................................................................................................................................................................................................................................................................................................................................................................................CAAC--AA------------CAGCA----------GCAAC-AACAACA........................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................................................C--AA------------CAGCA----------GCAAC-AACAACAAC-------------------------------------------------------AA.............................................................................................................................................................................................................................................................................................................................................24200.0510001000000
....................................................................................................................................................................................................................................................................................................................AGCAGCA------------G---C------AG-------------------------------------CAAC--AA------------CAGCA----------G....................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000100
..................................................................................................................................................................................................................................................................................................................................................AG-------------------------------------CAAC--AA------------CAGCA----------GCAAC-AACA...........................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
.........................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCA------------G---C------AG-------------------------------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC-AACAACAAC-------------------------------------------------------AACAGCAG.......................................................................................................................................................................................................................................................................................................................................22200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CAAC-AACAACAAC-------------------------------------------------------AACAGCAGCA--A..................................................................................................................................................................................................................................................................................................................................24200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-------------------------------------------------------AACAGCAGCA--ACA---------------------------------------ACAACA...................................................................................................................................................................................................................................................................................22200.0510100000000
.................................................................................................................................................................................................................................................................................................................AGCAGCAGCA------------G---C------AG-------------------------------------CAAC--AA------------CA..................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000100000
.................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAACAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................C------AG-------------------------------------CAAC--AA------------CAGCA----------GCAAC-AA.............................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
..................................................................................................................................................................................................................................................................................................AACAACAGCAGCAACAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC-------------------------------------------------------AACAGCAGCA--ACA---------------------------------------ACAACA...................................................................................................................................................................................................................................................................................23200.0510100000000
.................................................................................................................................................................................................................................................................................................................AGCAGCAGCA------------G---C------AG-------------------------------------CAAC--A.................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010000
........................................................................................................................................................................................................................................................................................................................GCA------------G---C------AG-------------------------------------CAAC--AA------------CAGCA----------G....................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
.........................................................................................................................................................................................................................................................................................................................CA------------G---C------AG-------------------------------------CAAC--AA------------CAGCA----------GCAAC-A..............................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCA--ACA---------------------------------------ACAACAGC.................................................................................................................................................................................................................................................................................21200.0510100000000
....................................................................................................................................................................................................................................................................................................CAACAGCAGCAACAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000100000
.....................................................................................................................................................................................................................................................................................................................GCAGCA------------G---C------AG-------------------------------------CAAC--AA------------CAGCA----------.....................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
............................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCA------------G---C------AG-------------------------------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100000
...........................................................................................................................................................................................................................................................................................................................................................................................AC--AA------------CAGCA----------GCAAC-AACAACA........................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
droPer2
TTGT-----------------------AT----------------------TTTTGCTGTTTA-----------------------ATCGCTA-------GCCGCCAGCCAA----------------------------GT--------TAT-------------------TTACATC--GACCGTCG------GGCAACAACAACAACAA------CAA------------------------------A------------------AACAACA--------------------------------------------------G---C------AACGAC-------------------------------------------------------------------------------------------------------------AACAGTTACAGCAACAAGAA-------------------CAACA---------------------------------------A------------------------CCACAACAAGTCGAGTCT---------GGCGAAAAATGTTTTAC---AATTAAAATTACGCGCGCAGCAGGCAAAA--------------------------------------------AGTATCTGG------------------------CAG--------------ATA---------------CGCAAAC----------A----CACACATAC---------------GCACCCA-----------TACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................CAA----------------------------GT--------TAT-------------------TTACATC--GACCGTCG------GGCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
droAna3
GTAC-----------------------CTCGGC-GGGCA--GCTTG--GGTGCTG------------CGA---------------------GCGGTAGCAGTGT--GGGTGA----------------------------ATCGCTGTGGAG--CAGTAGCGAA----------------GCGC-------------------------------------------------------------------------------------------------AGCAGTTCCAGCAGCAGCAGCAACAACAGCAGCA------------GGCCCAACAGCAGCAGC-------AACAGCAACACCACCACCACCAGCAACAACAA-----------------CAGCTCCAGCAG-------------------------------CAG---------------------CAGC-------------------------A---GCAACAGGCGCAG------------------------------------------------------CAG--------C------------------------------------------------------------------------------------------AGCAGC---A--------------------ACA------------GCA--------------GCAC---------------CAT------------------------------------CACCACCACC--A-----------GCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................GTGA----------------------------ATCGCTGTGGAG--CAGTAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002100010
.....................................................TG------------CGA---------------------GCGGTAGCAGTGT--GG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.............................................................................................................................................................................................................................................................................................................CAACAACAGCAGCA------------GGCCCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
................................................................................................AGCAGTGT--GGGTGA----------------------------ATCGCTGTGGAG--C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
....................................................................GA---------------------GCGGTAGCAGTGT--GGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......................................................................................................................................................................................................................................................................................................................................................................................CAACAACAA-----------------CAGCTCCAGCAG-------------------------------CAG---------------------CAGT-------------------------.................................................................................................................................................................................................................................................................................................................................2811.001100000
...........................................................................................................GGTGA----------------------------ATCGCTGTGGAG--C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
..................................................................................................................................................GTGGAG--CAGTAGCGAA----------------GCGC-------------------------------------------------------------------------------------------------AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
......................................................................................................GT--GGGTGA----------------------------ATCGCTGTGGAG--CAGTAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.................................................................................................GCAGTGT--GGGTGA----------------------------ATCGCTGTGGAG--CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
.................................................................................................................................................TGTGGAG--CAGTAGCGAA----------------GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
............................................................................................................................................................GTAGCGAA----------------GCGC-------------------------------------------------------------------------------------------------AGCAGTTCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.....................................................................................................TGT--GGGTGA----------------------------ATCGCTGTGGAG--C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...............................................................................................................................................................................................................................................................................................TCCAGCAGCAGCAGCAACAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---A--------------------ACA------------GCA--------------GCAC---------------CAT------------------------------------CAC.........................2220.501010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---A--------------------ACA------------GCA--------------GCAC---------------CAT------------------------------------CACCAC......................2220.501010000
....................................................................................................................................................................................................................................................................................................................................................................CAACACCACCACCACCAGCAACAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.501010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AG-------------------------------CAG---------------------CAGC-------------------------A---GCAACAGGCGCAG------------------------------------------------------C.........................................................................................................................................................................................................................................................2420.501000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-------------------------A---GCAACAGGCGCAG------------------------------------------------------CAG--------C------------------------------------------------------------------------------------------A...................................................................................................................................................2130.331010000
...................................................................................................................................................................................................................................................................................................................................................................GCAACACCACCACCACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.331100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................G-------------------------------CAG---------------------CAGC-------------------------A---GCAACAGGCGCA.................................................................................................................................................................................................................................................................................................................2140.251010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---A--------------------ACA------------GCA--------------GCAC---------------CAT------------------------------------............................1840.251000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................AG-------------------------------CAG---------------------CAGC-------------------------A---GCAACAGGCG...................................................................................................................................................................................................................................................................................................................2060.171000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG--------C------------------------------------------------------------------------------------------AGCAGC---A--------------------ACA------------GCA--------------GCAC---------------CA.................................................................2360.171010000
........................................................................................................................................................................................................................................................................................................AGCAGCAACAACAGCAGCA------------GGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.171010000
............................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC-------AACAGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.153100002
..................................................................................................................................................................................................................................................................................................................................................AGCAGC-------AACAGCAACACCACCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.141100000
.........................................................................................................................................................................................................................................................................................................GCAGCAACAACAGCAGCA------------GG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.131010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................G-------------------------------CAG---------------------CAGC-------------------------A---GCAACAGGCG...................................................................................................................................................................................................................................................................................................................1980.131100000
...........................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGCA------------GG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.111000001
..........................................................................................................................................................................................................................................................................................................CAGCAACAACAGCAGCA------------GG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.111010000
.................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAACAACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................G-------------------------------CAG---------------------CAGC-------------------------A---GCAACAGGC....................................................................................................................................................................................................................................................................................................................18190.051010000
............................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC-------AACAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
droBip1
TCAA-----------------------TTAGTG-G--TT--TG-------------CTGTGAG-----------------------T-TTTTA-------GCTGCAAGCTTT-----------------TTTTGTTGTTGTTGTTTTTGTCATTTGGCCTTT--------AATCACA------------------GACGGCGGCAGCAACAT------CAG------------------------------A------------------AACAACA--------------------------------------------------G---A------AACATCATCAGC-AGCAGCAGC---------------AGCAGC--AA------------CACCA----------GCCAC-TACTGCAA-----------------------------------------C--------------TGCAACAGCA--ACAGCAAAAGCAAAAGCAA---------CC---GCAG--------------------------------------------------------------------------------------------------------------------------------------CATCAGCAGC---C--------------------AAAGCCACTGCTG--CTA--------------CTT---------------CTTCTTC----------T----TCTTCGCGC---------------TAACAAA-----------CACASizeHit CountTotal NormTotal
No Reads
droKik1
TGAA-----------------------ATGGAA-GCAG----------CT-------ATACGCTCCACTTCAGTGCAGGTCGGTGCTCCGCCG-------CCC-----------------------------------------------------------------------ACA------------------AACAACAACAACAAC------AACAG------------------------------C------------------AGCAGCA--------------------------------------------------G---C------AACAACACAGGC-AGCAGCAGCACCAGC-----------------AGTAATAGCAGCAGCAGTA----------GCAAC-AACAACAA-----------------------------------------CAAC-------------------------A---ACAACAGCAGCAG---------CA---GCAG-----------------------------------------------------------------CA---------------------------------GTAGCA--------------------------------------------GCGGC----AGCAAC---------------A--AT--------------------------------------------------------------------------------AACACA-----------CCCASizeHit CountTotal NormTotal
No Reads
droFic1
GTGGTGGTGCGCAGTTATCGCCGCAAAG----------C--AACCA--CA---------------------------------------------------------------------------------------------------------------GCA----------------GCAG----------------------CAACAC------C---ACCACCACCAGCAAT---------------ACCAACAA--------------------------------------------------------------CTCTAGTTCCAACAACAACAAC------A-ATAAT---------------------AACAA-----------------CAACACCAGCAA-------------------------------CAACAATAACAACAATACAAATAATAATAA-------------------TA---------------------------------ACAA------------------------------CCATACGAA--------T---------AATAATAATA--------------------------------------------------------------------------------------------------------------------ATA--------------ACAC---------------AAC--------------TAATCAAAAACAA---------------GGACAC----------------SizeHit CountTotal NormTotal
No Reads
droEle1
GCAT-----------------------TC-ACACCGCCAGCAAATGTGAGTGGCGGC---------------------------------------GGCGGCGG--CAGTGAATTGCTGACCAGGCGCA-----------GGGCTTTGGCAC---------------------------------------------------------C------ACC---GCCAGCTCCGCCAGT---------------T--------------------------------------------------------------TCTGCCACACCACCTGGTACACCTGCAAC------A-ATATC---------------------ATCAT-----------------CATCATCAGCAG-------------------------------CAGCAGCAGCAG-------------------------------------------------------------------CA---GCAGCAGCAG------------------------CAATGCCTG--------C------------------------------------------------------------------------------------------------------------------AGC---------------AGCACACAACACTACCAGCAACGCA-----TACGAAATGTTGTA------CTCCCACAACCAAAAACAC---------------CCACACC-----------CACASizeHit CountTotal NormTotal
No Reads
droRho1
GGCG-----------------------CT----------------------------------------------------------TTATCA-------CCCGCAA-----------------------------------------------------------------------CAACGG----------------------CAGCAACACGAACGACAAGCACGCCAGCAACAGCAGCAGCACCACC------------------A---------------------------------------------------------------------------------GCAAC------------------ACCA---------------------------------CCAAC-GGCAGCAGCAACAGAGTCAAC---A------------------------------------------------------------------GCAACAGCTGCGACAGCAGCAA--------------------------------------------------------------------------------------------------------------------------------------CATCAGCAGC---A--------------------GCAGCAGTAGCA---GCA--------------ACACATCGCG-----------------------CTGTAGTCACACACAT---------------TGACACGCCCCCAATCCAGATASizeHit CountTotal NormTotal
No Reads
droBia1
GGCG-----------------------CT----------------------------------------------------------TTATCA-------CCCGCAA-----------------------------------------------------------------------CAGCGG----------------------CAGCAACACGAACGACAAGCACGCCAGCA--------------------------------------------------------------------------------ACAGCA------ACAGCAGCAGCAGCAGC----------AAC---------------AGCAACA---------------------------------CCAAC-GACAGCAGCAACAGAGTCAAC---A------------------------------------------------------------------GCAACAGCTGCGACGGCAG-----------------------------------------------------------------------------------CAA---------------------------------------------------CATCATCAGC---A--------------------GCAGCAGCAGCA---GCA--------------ACACATCGCG-----------------------CTGTAGTCACACATAC---------------AGGCACA-----------CATTSizeHit CountTotal NormTotal
No Reads
droTak1
CGTA-----------------------GAG--------------AA--AAATTTG---TGTTGTCTGC-------------------TCGCGGGCTAGATAA-------TAA----------------------------TT--TTTTTTACCCCAGTGAAAAT----------------GTGCA-AAGTGCCAAGACAACAGAAAAAGA------AACAG------------------------------C------------------A--------------------------------------------------------G---T------TGCAAC------A-ACAGT------------------AGCAGCA-------------------------------------ACATCAGC--------------------AGCAGCAGCA---------ACAGCAA-------------------CAGCA---------------------------------------G------------------------CAACCTTAA--------G---------CT-------------------------------CGAAAAAGGAGGAGGC--------------------------------------------GGGGC----AG--GCGCCATTGT---------------------------------------------CAT----------TGCCA----TACTCAAAC---------------CCAAACC-----------CAAASizeHit CountTotal NormTotal
No Reads
droEug1
GAT-----------------------------------C--AACGA--CATTCTGGCGGGCAG-----------------------TGCAGCG-------GCCGC----------------------------------------------------------------TTTTTACA------------------AGCAACAGCAGCAGCAG------CAG------------------------------C------ACCATCAGCAGCAGTTGCACCACCA------------------------------------------------------CAGCAAC------A-AC---------------------AACAACAA-----------------CAATTCGGGATC-------------------------------CAGCGGTGGCAGCAGTCCCGCTCACAACAAC--------AACAACAACA--ATA---------------------------------------------------------------------ATAA--------T---------AGCGAAAACTTTGAGAC---ACCAAG---------------------------------------------------TGGCGGTGTT---GGCGGTGC----CT-------------------------TGCCACCTGCC---------------------------CTGCACCTTCCA----CAACCACAT---------------CCACATT-----------CACASizeHit CountTotal NormTotal
No Reads
dm3
TAAT-----------------------GGGGT---------GGTGG--CATTGCGGCAGGTGCCTCAC----------------------TTG-------ACCACAAGGCA-----------------------------GCAGCTTTGTGCT-------------------CTACAGG--CATTAACA------AACAGCAGCAGCAGCAG------CAA------------------------------C------AA-----------------------------------------------------------------------C-------------------------------------------AACAAC---------------------------------AAC-AACTGCAACAACATTTG--------------------CAATC------AG--T---CGCCGAACGGCAGCAA--TAACA---------------------------------------A------------------------CAACAGCAGTTTGATGAT---------GACGATG---ACGA-GCAACCGCTAACACCAACCGAGCTGCAACCAAATGA----------CCAATG-----------------------------AGCCAA------------------------CCA--------------CTG-----------------CCCAC----------A----CACACACTC---------------ACACAAT-----------CACASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGAT---------GACGATG---ACGT-......................................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCAGCAA--TAACA---------------------------------------A------------------------CT..............................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................ACA------AACAGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................ACAGCAGCAGCAGCAG------CAA------------------------------C------AA-----------------------------------------------------------------------C-------------------------------------------AACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................27180.1730000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................ACAGCAGCAGCAGCAG------CAA------------------------------C------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGAT---------GACGATG---ACGA-......................................................................................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................GCAGCAGCAG------CAA------------------------------C------AA-----------------------------------------------------------------------C-------------------------------------------AACAAC---------------------------------AAC-A..............................................................................................................................................................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................AA------------------------------C------AA-----------------------------------------------------------------------C-------------------------------------------AACAAC---------------------------------AAC-AACTGC.........................................................................................................................................................................................................................................................................................................................................................................................................21110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................CAA------------------------------C------AA-----------------------------------------------------------------------C-------------------------------------------AACAAC---------------------------------AAC-AACTGCAACAG....................................................................................................................................................................................................................................................................................................................................................................................................27130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................AA-----------------------------------------------------------------------C-------------------------------------------AACAAC---------------------------------AAC-AACTGCA........................................................................................................................................................................................................................................................................................................................................................................................................19160.0610000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................CA------AACAGCAGCAGCAGCAG------CG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................AA------------------------------C------AA-----------------------------------------------------------------------C-------------------------------------------AACAAC---------------------------------AAC-AACTG..........................................................................................................................................................................................................................................................................................................................................................................................................20180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................AGCAGCAGCAGCAG------CAA------------------------------C------AA-----------------------------------------------------------------------C-------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................GCAGCAG------CAA------------------------------C------AA-----------------------------------------------------------------------C-------------------------------------------AACAAC---------------------------------AA.................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................AGCAGCAGCAGCAG------CAA------------------------------C------AA-----------------------------------------------------------------------C-------------------------------------------AACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................GCAGCAG------CAA------------------------------C------AA-----------------------------------------------------------------------C-------------------------------------------AACAAC---------------------------------AAC-AA.............................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................ACCACAAGGCA-----------------------------GCAGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................AGCAGCAGCAG------CAA------------------------------C------AA-----------------------------------------------------------------------C-------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................ACAGCAGCAGCAGCAG------CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................CAGCAGCAGCAGCAG------CAA------------------------------C------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................CAGCAGCAG------CAA------------------------------C------AA-----------------------------------------------------------------------C-------------------------------------------AACAAC---------------------------------AA.................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CAGCAG------CAA------------------------------C------AA-----------------------------------------------------------------------C-------------------------------------------AACAAC---------------------------------A..................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................CAGCAGCAGCAGCAG------CAA------------------------------C------AA-----------------------------------------------------------------------C-------------------------------------------AA........................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................CAGCAGCAG------CAA------------------------------C------AA-----------------------------------------------------------------------C-------------------------------------------AACAAC---------------------------------A..................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CAGCAG------CAA------------------------------C------AA-----------------------------------------------------------------------C-------------------------------------------AACAAC---------------------------------AAC-...............................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................ACAGCAGCAGCAGCAG------CAA------------------------------C------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
droSim2
GAT-----------------------------------C--AACGA--CATTCTGGCGGGCAG-----------------------TGCGGCG-------GCCGC----------------------------------------------------------------TTTCTACA------------------AGCAGCAGCAGCACC------ACCAG------------------------------C------------------AGTTGCACCACCA---------------------------------------------------------CAAC------A-AT---------------------AACAACAA-----------------CAATTCGGGCTC-------------------------------CAGCGGCGGCAGCAGTCCCGCTCACAGCAA-------------------CAACA---------------------------------------A------------------------CAACATTAA--------T---------GGCGATAACTGTGAGGC---AGCCAA---------------------------------------------------TGTTGCTGGC---GTCGGTGC----CC-------------------------TGCCATCCGCC---------------------------CTGCACCACCCACAACCGCATCCGC---------------CCACGCA-----------TCCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-------------------CAACA---------------------------------------A------------------------CAACATTAA--------...............................................................................................................................................................................................................................................1811.00100001000000000000
.......................................................................................................................................................................................................................................................................................................................................................C------A-AT---------------------AACAACAA-----------------CAATTC...........................................................................................................................................................................................................................................................................................................................................................................................................................1821.00200002000000000000
droSec2
GAT-----------------------------------C--AACGA--CATTCTGGCAGGCAG-----------------------TGCGGCG-------GCCGC----------------------------------------------------------------TTTCTACA------------------AGCAGCAGCAGCACC------ACCAG------------------------------C------------------AGTTGCACCACCA---------------------------------------------------------CAAC------A-AT---------------------AACAACAA-----------------CAATTCGGGCTC-------------------------------CAGCGGCGGCAGCAGTCCCGCTCACAGCAA-------------------CAACA---------------------------------------A------------------------CAACATTAA--------T---------GGCGATAACTGTGAGGC---AGCCAA---------------------------------------------------TGTTGCTGGC---GTCGGTGC----CC-------------------------TGCCATCCGCC---------------------------CTGCACCACCCACAACCGCATCCGC---------------CCACGCA-----------TCCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CACA-----------------------TTTATT-GTAA----------TT-------GTTGTTGCTGCTGCT-------------------GCGTTGGCTACTTTTGTTTAT----------------------------TTACTTTTTGGGGAAGGCGCAA----------------CAGCAG----------------------CAGCAACAAGAACAACAAGAGCAGCAACA--------------------------------------------------------------------------------GCCATT------AC---AACAACGGCCAG------A-GCTAC---------------AACAAAA---------------------------------ACATTGGGCAATCACAATCGAATCAAATCAA------------------------------------------------------------------ACAAAATGCGCGAAAATAGCGC--------------------------------------------------------------------------------------------------------------------------------------CTCTGCCGAA---A--------------------GAAACAACAACA---GCA--------------ACGC---------------CTTTAA----------A----AATAG---------------------ACAC----------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................GGGAAGGCGCAA----------------CAGCAG----------------------CAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2221.50301200000000
...............................................................GCTGCTGCT-------------------GCGTTGGCTACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.00200200000000
..............................................................TGCTGCTGCT-------------------GCGTTGGCTACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100100000000
.............................................................TTGCTGCTGCT-------------------GCGTTGGCTAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100001000000
..............................................................TGCTGCTGCT-------------------GCGTTGGCTACTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50101000000000
.......................................................................................................................................................................................................................GAACAACAAGAGCAGCAACA--------------------------------------------------------------------------------GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100100000000
..............................................................TGCTGCTGCT-------------------GCGTTGGCTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCACAATCGAATCAAATCAA------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................................2320.50101000000000
......................................................................................................................................................GGGAAGGCGCAA----------------CAGCAG----------------------CAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100100000000
................................................................................................................................................TTTTTGGGGAAGGCGCAA----------------CAGCAG----------------------CAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.50100100000000
droEre2
CGT-------------------------TTGCA-GGAC---AAATG--TGTGATGCCGG---------------------------------G-------CTCGCAA----------------------------------------------AAGACGCAGCAAATATTCAT----------------------------------GACGT------C---ACAAATGCCGCC---------------------------------------------------------------------------------------------------------------------GACATCGACGCTGGC-----------------AGTGGTAGCAACGACAATG----------GCCAC-AACAGCGA-----------------------------------------CCAC-------------------------A---ACAACAAGTGCAGCGGCAGCCAAAACA---------ACAATAGCATCCATTGCAACCATCGCCACAATAA--------CAA------------------------------------------AGTCGAAGGCAAAAGCTAAAGCGATTTCAAAGAGCCATTAAATGTTAATGCCGAAAGCAGGAT----AGTG-------------------------CATCTCGCT---------------------------CTCTTTCCC--G----CA-----------------------GACACACACCGAAACACAAATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCTAAAGCGATTTCAAAG..................................................................................................................................................................2111.0010000100

Generated: 05/17/2015 at 10:20 PM