ID:

dmo_430

 Coordinate:

scaffold_6308:1442710-1442860 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.7 -16.2 -16.0 -15.8

Flybase annnotation

exon [dmoj_GLEANR_11057:8]; CDS [Dmoj\GI11146-cds]; intron [Dmoj\GI11146-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus+
mature
  1. scaffold_1811:20335-20354 +
  2. scaffold_4592:40087-40106 +
  3. scaffold_5098:843-862 +
  4. dmo_430  scaffold_6308:1442743-1442762 +
  5. scaffold_6333:39766-39785 +
  6. scaffold_6333:42791-42810 +
  7. scaffold_6425:19514-19533 +
  8. scaffold_6473:15239426-15239445 +
  9. scaffold_6473:15295419-15295438 +
  10. scaffold_6478:32167-32186 +
  11. scaffold_6482:1936967-1936986 +
  12. scaffold_6482:1961329-1961348 +
  13. scaffold_6482:1999973-1999992 +
  14. scaffold_6487:84851-84870 +
  15. scaffold_6498:373587-373606 +
  16. scaffold_6498:764050-764069 +
  17. scaffold_6500:29887867-29887886 +
  18. scaffold_6500:30086232-30086251 +
  19. scaffold_6540:1155529-1155548 +
  20. scaffold_6680:24129848-24129867 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAATTATCTCCGATATTTTATTATCGATTAAAACCCTTATCGAAAGCTAGTTATTTAATTATACCTCCTAAACCTTTAGAGGTAGAGCTTCCAAATTTTAAATGTAGACTTGTATGTATTTTATATAATTTCGATTTTTTTGTTGTAATTCTTACTTGTTACTATATATGCTTTATTTCTGTATTATTTTTTTCATTATAGAATATCATCAGCATGCTGCAGGGCATTTTGCGCTGGGCTGTGCCCGACGT
**************************************************(((..((((.................((((((((((((.............((((((((..(((............((((.((((......)))).))))..)))..))..))))))..)))))))))))).............)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V056
head
 V110
male body		 M060
embryo
 V041
embryo
............................................................................................................................................................................................................................AGGGCATTTTGCGCTGGGCTGT......... 22 0 2 0.50 1 0 0 1 0 0
..............................................................................................................................................................................................................CATCAGCATGCTGCAGGGCA......................... 20 0 2 0.50 1 0 1 0 0 0
....................................................................TAAACCTTTAGAGCTAGAGCTTCCA.............................................................................................................................................................. 25 1 20 0.15 3 1 0 0 2 0
..........................................................................................................GACTTGTATGTATTTTATATG............................................................................................................................ 21 1 7 0.14 1 1 0 0 0 0
...........................................AAGCTAGTTATTTAATTATACC.......................................................................................................................................................................................... 22 0 20 0.10 2 0 0 0 2 0
............................................AGCTAGTTATTTAATTATACCTCC....................................................................................................................................................................................... 24 0 20 0.10 2 1 0 0 1 0
.......................................TCGAAAGCTAGTTATTTAATTATACC.......................................................................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0
...........................................AAGCTAGTTATTTAATTATACCTCC....................................................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0
...........................................................................................................................................................................................................................CAGGTTATCTTGCGCTGGG............. 19 3 15 0.07 1 1 0 0 0 0
........................................CGATAGCTAGTTATTTAATTATACC.......................................................................................................................................................................................... 25 1 20 0.05 1 0 0 0 1 0
...................................................................................AGAGCTTCCAAATTTTAAAT.................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
..........................................AAAGCTAGTTATTTAATTATACCTC........................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0
...........................................AGGCTAGTTATTTAATTATACCT......................................................................................................................................................................................... 23 1 20 0.05 1 0 0 0 1 0
......................................ATCGAAAGCTAGTTATTTAATTATAC........................................................................................................................................................................................... 26 0 20 0.05 1 0 0 0 1 0
.....................................TATCGAAAGCTAGTTATTTAA................................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
.........................................................................................................GGACTTGTATGTTTTTTA................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 1
.......................TCGATTAAAACCCTTATCGAAAGCTA.......................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

ATTAATAGAGGCTATAAAATAATAGCTAATTTTGGGAATAGCTTTCGATCAATAAATTAATATGGAGGATTTGGAAATCTCCATCTCGAAGGTTTAAAATTTACATCTGAACATACATAAAATATATTAAAGCTAAAAAAACAACATTAAGAATGAACAATGATATATACGAAATAAAGACATAATAAAAAAAGTAATATCTTATAGTAGTCGTACGACGTCCCGTAAAACGCGACCCGACACGGGCTGCA
**************************************************(((..((((.................((((((((((((.............((((((((..(((............((((.((((......)))).))))..)))..))..))))))..)))))))))))).............)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
.................................................................................CATCTCGAAGGTTTAAAATTTACATCT............................................................................................................................................... 27 0 2 0.50 1 1
................................................................................CCCTCTCGAAGGTTTAAAATTTACATCT............................................................................................................................................... 28 1 2 0.50 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6308:1442660-1442910 + dmo_430 TAATTATCTC--------CG--ATATTTTAT--------------------TA----TCGATTA----AA-AC-------C----------------------------------------------------CTTATCGAAA--GCTAGT-------------------TATTTAATTA---------------------------------------------------------------------------TA--CCTCCTAAACCTTTAG--AG--------------------------GTAGAGCTTCCAAA-------------------TTTT----------A-AAT---------------------G-------TAGACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTATTTTATATAATTTCGATT--TTTT-----------------TGTTGTAATTCTTACTTGTTACTATATA------------------------------------------------------------------TGCTTTATTTCTGTATTATTTTTTTCA--------------TTATAGAATATCATCAGCATGCT---------------G---------------------CA---GGGCATTTTGCGCTG----GGCTG------TGCCCGACGT
droVir3 scaffold_12723:2561158-2561369 + TAATTTGTCTCT------TT--CC---AAGC--------------------AA----TCGATAA----GA-AC--------------T---------------------------------------------AATATCTAAA--TCTTGT-------------------------------------------------------------------------------TTTTGAGCTAATTTCT------------------TTGGTTTTAAG--AG--------------------------CTAGAATAACTGAA-------------------TTTG----------T-AGC-------------------------------------------------T---------------------------------------------C-AAGT-------------------------------------------------------------------------------------------------------GTTTT----------TAA-------------------------------------------------------------------ATTATTGCTACCCCCTTCGAATTAAAGCAAACTACACACCAATTTCAGC-------------------------CACAACTATACTGTTTTTGTTA--------------TTATGAAATAT--------------------------AC---------------------AA---A-----------------------------TATGCTATAG
droGri2 scaffold_15126:3196639-3196892 + TAGCTTCCCTGTTTCGC-GA--ATATCTTAA--------------------TC----TTAAAGG----AA-TG-------C----------------------------------------------------CTTTCCAATT--GTTGTA-------------------TACATAATT----TACACCAATTTATAA---------------------------------------------------------------------TATCCCAGAT-----CAACA--------------------------------------------------------TATTTCCTAT-AAA---------------------G-------C---------------AAACTTGCTTGTTTCACTCTATTTTTCTTCTCAAATATTT----------T-GTTTGATTTCATAGGGTCTTTTAATAT-TAT-------------------------------------------------------------TT-------------------------GTATCTTT------------------------------------------------------------------------------------------------------------------------------------------------------AATTTAT------------------TTATAAAATATTTTGATAATTTT---------------A---------------------AA---AAACATTTTTTGC------------AAATTTCTGGACTGT
droWil2 scf2_1100000004513:5889948-5890203 - TAGTTTTTTA--------CA--TAAAAC-AT--------------------CA---------------G-GTCT-CGAAATTTTAAT---------------------------------------------------------------------------------------------------------------------------------------------------TAGAT-------CGGATAAATAGAAC---ACAATTTATAGG--CAATATAA-------------------------ATCGGCTC-----------------TGCTCAAATGCTGCCGGTAGCGCTGCTTCTGTATGGCTTATGTATG------------------------------------------------TTTTTTAATGTG-----------TTGA-TTGTGTTAGAAGATAGATACATAGATAG-------------------------------------------------------------AAATGTACATTATATACTTA----------TAA-----ATAATCCTT------------------------------------------------------------------------------------------------------------------------------------------TAATTTTTTCC--------------TTCCAGAATGAAAACTTCAAACT---------------G---------------------CAA--------------------------------ATGGCAATTT
dp5 Unknown_group_115:13652-13855 + CACTTATGTT--------TA--ATGCGCTAG--------------------TC----A----------------------CCTTACGCA-TC-----------------------------------------CTTGTGGAA--AGTTATT-------------------TACTTAAATCTAATAGATACATTTAACATTTTTGAAAAGCTTA-CA---CTTATAATTGTTTTTACAAAATTTTGA------------------TTACTTTTTAA--AT--------------------------TTTGATTATTTAT-------------------------------------------------------------------------------TCTACTATTT---------------------------------------------T-ATTT-------------------------------------------------------------------------------------------------------GTTTT-----------------------------------------------------------------------------TCTATT------------------------------------------------------------------ATTTTTATTTATTTATTTT---------------------------------------------------------------------------------------------------------------------TTTTTTTTTT
droPer2 scaffold_6:2775275-2775504 + TACTAATTTT--------TT--ATATTTTTT--------------------TATTTTT----TAATAT-GGAT--------------T-----------------------------TATTATTA---------------T--ATACA---TTTATTTTTGTTAAATTTTATTTTTTTTG---------------------------------------------------------------------------TA--TTGTATAATTTTTTAG--TG--------------------------CTATAATTATTTT-----------------TTTTTTA------------ATA---------------------C-------TATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------TTCTTTATTTTTTGTATT----------TTTTATTATTGATTTATTATTATATTAATTTTTTTTTGCTAATTTTTA------------------------------------------------------------------TTTTTTTTTTCTGTAGT-------------------------------------------------------------------------------------------------------------------ATTATTATTATTAT
droAna3 scaffold_5362:3140-3312 - TCATTTTTTC--------TA--ATATTTTTTCATTTCATTT---------------------------------------TCCTTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAAATATT-----------TTTC-TTATTTTATATTTTTTTTAAATATATAT-------------------------------------------------------------AT-------------------------ATATTTTTTTTTTTTTTTTGAATTT--TTTT-----------------TCTTTTCATTTTTTTT---------------------------------------------------------------TTAAATATGTATG----TATTTTTTTTTTTTTTTT--------------------------------------------------------------------------------------------------------------------TTGTTCTTTA
droBip1 scf7180000396589:204682-204891 - TATCGAACAT--------AG--CTAAGTT------TG---------------------------------ATT-TTACT-TTTTAGACCATTTATTTTATAAATTT----TTGGCTA----------------------------------------------------------ATATTCCT-----CT---------------------------------------------------------------------TT---T---------------------------------------------------TAAA--TATCCAACTTTTTAAATTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTAATTTTCTAT---------TAAATTTTTTATCTT-------------------------TTTTTCTGTGT------------------------------------------------------------------------AGAAACGCCCCCATCAAGCGCCAAATTGCTGTGCGC----------------------------------------------------------------------------------------------CGTTTGCAAGGATG-----------------------CGTTC-------------------GGCAA------TCCCTGGGAT
droKik1 scf7180000302610:904463-904760 - TACATTTAAA--------AG-AGTTTTTTAGAGATTCAAAA---------------------------------------CCTCTTAGAAAATTT----------------------------------------------------------------------------------------TAAAACGATTTAAAATCTCTTAAAAGATTTGAAACCTTTAAAAAAGTTC-TGAAGA-------GATTTAAAATCTATT---T--------AG--A------------------------------------------------------------TTTA----------A-AAT---------------------A-------TATATTTTTTTTGCATTATTT--AAT------------GTTTTTTTTTTAATTT-C----------T--------------------------------AGTATATTTTATTATTATTATAAATTTTCTTA---------ACAATTTGTTACCCC-------------------------TTTTTCATCCTCCCCCCTT------------------------------------------------------------------------------TTTTCTCCCTGTGCATGTGTGT----------------------------------------------------------------------------------------------GGGTGGCAGCAGTG-----------------------CTAATGGGAAT-TTGTGTT---------G------T-----GCCT
droFic1 scf7180000454066:2041626-2041847 + TAATTTTATT--------TG--AATTGAAACTC-------CGATATATTTTTG----TAGATTA----A-ATTC-TCTGTCTTCAATGATTT--------------ATTT------------------------------A--ATACA---AATATTCTTGTTATA--CAAATATTCTTG---------TTATTTACATTTGT-------------------------------------------------------------C-----AA--------------------------------------------------------------------------------GAGCGTTATATTTTTATTAAATA-----------------------------------------------------------------------------TGT------------------------------------------------------------------------------------------------------------------------ATTAT----------------------------------------------------------------------------------------------AAATTACACAATAATTCATATTATTTGTGAAAGGCTATATAAGCTACATT--------------------------------------------------------------------------------------------------------TCTTTT-----------TAACATTTTAAATTAT
droEle1 scf7180000491242:188576-188769 - TTTTTAGTTC--------TTCGACATTTAGTAATTGTAAAA---------------------------------------TATTTCAGAAT-------------------TACGGTTTAAATTTAAAT-----------------------------------------------AAAGCT------------------------------------------------------------------------------TC---C---------------------------------------------------ATGGGAACAATAAAA-------GTTA----------A-TAA---------------------AAAAATTTTAAATG----------TAACTTTTCTGTTTT---GTAATTTTTTTTTCAAAATT-C----------T--------------------------------TTTTGACTTGA---------------------TAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTGACAGTTCAGAATTA--------CG--CT---------------------TCTAATTTTA
droRho1 scf7180000780098:152423-152631 - TTTTACTAGC--------GA--AAAGCTATTAT-------T-AA-------A----------TG------AGGC-AGATAATTAAAATGACT-----------------------------------------TTTCTTAAA--AGGTAGT-------------------GTTTTAAATTTAT---TTCCAGCTAAGACTGTTGAAAAGTTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTACTTTTATTCTTTCT-----------------TGCTAAAATTCTTACTTGCTTCTAAGAA------------------------------------------------------------------TTCCTTTGTACAATTTAATTTGCTTCATAGGCTTTTTGGTAATAT-------------------------------------------------------------------------------------------AAAATATAAT
droBia1 scf7180000301713:14182-14390 - TATTTTTTGAT--TCAATTTTATTAA--------------T---------------------------------------GACCTT---------------AGTAG----TGGAGTCCACTGTCAATTAAACCTAT--------------------------------------------------------------------------------------------------------------------------------T-----TT--------------------------------------------------------------------------------GGGAGTTATTTCTTTAC----------------------------TGTATTAT-----------------------------------------------CGCA-TTACTTTTCATTTAATTGAAATAAGTAT-------------------------------------------------------------GT-------------------------TTATTTATTTTTTTCTTC---------------------------------------------------------------------------------------------------------------------------------TTTCTTTTCTTTTCTTTTTTTA--------------TTTTTTAATT----TTTTTAATT---------------ACATGCAGAATCTGCAGAA-----------C------------------------------ACTTTG
droTak1 scf7180000414436:1445-1659 + TAATCATTTC--------TA--AAATGTTTTAT------------------AT----TCAAGTT---------------AAAAGAGTTAATA--------------TTTC------------------------------G--CATAC---------------------------AATTTT--------------------------------------------------T-TTAATT-------TATATAAAATATACC---CA--ATTTAAAAT-----TTA---------------------------------------------------------------------------------------------------------------ATATTCCCTTCTTGGATTTTAATATTA-------------AACT-AAGCATTTACAT--------------------TTAAATTAATAT-------------------------------------------------------------TT-------------------------ATATTATT----------------------------------------------------------------------------------------------------ATTCAATTA-ATAT----------------------------------------------------------------------------TT------AA---------TATTT---------------------AA---ATTTACTATTCCA-----------TTATTTTTTCAGTTAT
droEug1 scf7180000408818:35102-35317 - TAAATGTTGC--------CA--ATAGCTTTGAT------------------AT----TTAAATA----AA-AA-------T----------------------------------------------------TTTATAAAAA--TAAAAT-------------------GAAATAAAA---------A------------------------------------------------------------------TA--TT---TAAAATTCAAAAG-----TAAAAGTCTTTTATTTTTTCACGCCC--------ATATTAACTGAAA---------TAAA----------T-AAA---------------------A-------CAAATTTTTACTTTATCATTA--AAT------------GTGTTTATTTAAATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------TTCATTATTTCAGTGATTTTGTTTTCA--------------TTATATAATT-------------------------------------------------------------------------------------AAATCAATAT
dm3 chr3R:3019791-3019971 + CCTAATCCCT--------TA--CC------------TGTAT---------------------------------------TCCTCAATGCTAGTTTTTGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------A-TAT---------------------T-------CGGACTTTTAATAATTTCTTTTTATTTTTTAGTATTT-------------ATTT-TAATGGTTATCC--------------------------------TCTGAATGTTT---------------------GCGTTAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------TTTACACAGCTT-CGAC----------------------------------------------------------------------------GT------CG---------TTGCC---------------------AA---ATCCATTTTTCGATGATATGTCTT------TGCCCCAAAT
droSim2 4:631548-631713 + TGGAATCATT--------TGCAGCATTTACCGGACTTATAT---------------------------------------CCCTACACAATACATTATAAAAGTTG----TGGGGTC----------------------------------------------------------GAATCT------------------------------------------------------------------------------TC---C---------------------------------------------------AAA-------------------TCTG----------A-TAA---------------------G-------CAAATTTTTATTAATTTACTTCGAATGTTTTATTCTG-------------ATTT-T----------T--------------------------------TTTACATGTTG---------------------AAATTAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------------------------------------------------------------------------ATCATTTCGATACT
droSec2 scaffold_30:530821-531003 + TGGAATCATT--------TGCAGCATTTACCGGACTTATAC---------------------------------------CCCTACACAATACATTATAAAAGTTG----TGGGGTC----------------------------------------------------------GAATCT------------------------------------------------------------------------------TC---C---------------------------------------------------AAGA--CGGTAGACGGTCCAAATCTG----------A-TAA---------------------G-------CAAATTTTTATTAATTTACTTCGAATGTTTTATTCTG-------------ATTT-T----------T--------------------------------TTTACATGTTG---------------------AAATTAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------------------------------------------------------------------------ATCATTTCGATACT
droYak3 2R:6611002-6611130 - TGATTTTTTT--------CA--TTTTATTAT--------------------TT---------------G-ATCT-ACTAATTTCAATCGATT--------------TTTC------------------------------A--AAGTC---------------------------AATGCT------------------------------------------------------------------------------CC---C---------------------------------------------------AAGCCACAAGAAATGGCTCGCTC---------------------------------------ACAATTTTTAAACCTGCATTGATTTATTCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------TTTTATTATT
droEre2 scaffold_4784:23213270-23213467 - AAACTGTCAC--------GG--CCACACTTT--------------------TAAAAAA----TGTTGT-GATA-TTGTT----------------------------------------------------------------------TT-------------------TTTATATATG---------------------------------------------------------------------------TA--TCTTGTAAATTTCTAG--AG--------------------------ATTTTCC----AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACTTTTTGCCACGCGCACT-------------------------TTTTTTACTTTTTTTTC----------TTTTTATTATTATTTTTACTTTATATT----------------TTTATT------------------------------------------------------------------TTATTTATTTTTATTTTATT---------------------------------------------------------------------------------------------TTTTAC-----------CTATATTTCAGAAAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TAATTATCTC--------CG--ATATTTTAT--------------------TA----TCGATTA----AA-AC-------C----------------------------------------------------CTTATCGAAA--GCTAGT-------------------TATTTAATTA---------------------------------------------------------------------------TA--CCTCCTAAACCTTTAG--AG--------------------------GTAGAGCTTCCAAA-------------------TTTT----------A-AAT---------------------G-------TAGACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTATTTTATATAATTTCGATT--TTTT-----------------TGTTGTAATTCTTACTTGTTACTATATA------------------------------------------------------------------TGCTTTATTTCTGTATTATTTTTTTCA--------------TTATAGAATATCATCAGCATGCT---------------G---------------------CA---GGGCATTTTGCGCTG----GGCTG------TGCCCGACGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GGGCATTTTGCGCTG----GGCTG------T.........2220.501000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCATGCT---------------G---------------------CA---GGGCA...................................2020.501000100
....................................................................................................................................................................................................................................................................................................................................................................................................GACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTATTTTATATG................................................................................................................................................................................................................................................................................2170.141100000
.............................................................................................................................................AA--GCTAGT-------------------TATTTAATTA---------------------------------------------------------------------------TA--CC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000020
..............................................................................................................................................A--GCTAGT-------------------TATTTAATTA---------------------------------------------------------------------------TA--CCTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102100010
.........................................................................................................................................TCGAAA--GCTAGT-------------------TATTTAATTA---------------------------------------------------------------------------TA--CC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102200000
.............................................................................................................................................AA--GCTAGT-------------------TATTTAATTA---------------------------------------------------------------------------TA--CCTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
...................................................................................................................................................................................................................................................................................................................AGAGCTTCCAAA-------------------TTTT----------A-AAT---------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
............................................................................................................................................AAA--GCTAGT-------------------TATTTAATTA---------------------------------------------------------------------------TA--CCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
........................................................................................................................................ATCGAAA--GCTAGT-------------------TATTTAATTA---------------------------------------------------------------------------TA--C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
.......................................................................................................................................TATCGAAA--GCTAGT-------------------TATTTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.........................................................TCGATTA----AA-AC-------C----------------------------------------------------CTTATCGAAA--GCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
droVir3
TAATTTGTCTCT------TT--CC---AAGC--------------------AA----TCGATAA----GA-AC--------------T---------------------------------------------AATATCTAAA--TCTTGT-------------------------------------------------------------------------------TTTTGAGCTAATTTCT------------------TTGGTTTTAAG--AG--------------------------CTAGAATAACTGAA-------------------TTTG----------T-AGC-------------------------------------------------T---------------------------------------------C-AAGT-------------------------------------------------------------------------------------------------------GTTTT----------TAA-------------------------------------------------------------------ATTATTGCTACCCCCTTCGAATTAAAGCAAACTACACACCAATTTCAGC-------------------------CACAACTATACTGTTTTTGTTA--------------TTATGAAATAT--------------------------AC---------------------AA---A-----------------------------TATGCTATAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
TAGCTTCCCTGTTTCGC-GA--ATATCTTAA--------------------TC----TTAAAGG----AA-TG-------C----------------------------------------------------CTTTCCAATT--GTTGTA-------------------TACATAATT----TACACCAATTTATAA---------------------------------------------------------------------TATCCCAGAT-----CAACA--------------------------------------------------------TATTTCCTAT-AAA---------------------G-------C---------------AAACTTGCTTGTTTCACTCTATTTTTCTTCTCAAATATTT----------T-GTTTGATTTCATAGGGTCTTTTAATAT-TAT-------------------------------------------------------------TT-------------------------GTATCTTT------------------------------------------------------------------------------------------------------------------------------------------------------AATTTAT------------------TTATAAAATATTTTGATAATTTT---------------A---------------------AA---AAACATTTTTTGC------------AAATTTCTGGACTGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TAGTTTTTTA--------CA--TAAAAC-AT--------------------CA---------------G-GTCT-CGAAATTTTAAT---------------------------------------------------------------------------------------------------------------------------------------------------TAGAT-------CGGATAAATAGAAC---ACAATTTATAGG--CAATATAA-------------------------ATCGGCTC-----------------TGCTCAAATGCTGCCGGTAGCGCTGCTTCTGTATGGCTTATGTATG------------------------------------------------TTTTTTAATGTG-----------TTGA-TTGTGTTAGAAGATAGATACATAGATAG-------------------------------------------------------------AAATGTACATTATATACTTA----------TAA-----ATAATCCTT------------------------------------------------------------------------------------------------------------------------------------------TAATTTTTTCC--------------TTCCAGAATGAAAACTTCAAACT---------------G---------------------CAA--------------------------------ATGGCAATTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
CACTTATGTT--------TA--ATGCGCTAG--------------------TC----A----------------------CCTTACGCA-TC-----------------------------------------CTTGTGGAA--AGTTATT-------------------TACTTAAATCTAATAGATACATTTAACATTTTTGAAAAGCTTA-CA---CTTATAATTGTTTTTACAAAATTTTGA------------------TTACTTTTTAA--AT--------------------------TTTGATTATTTAT-------------------------------------------------------------------------------TCTACTATTT---------------------------------------------T-ATTT-------------------------------------------------------------------------------------------------------GTTTT-----------------------------------------------------------------------------TCTATT------------------------------------------------------------------ATTTTTATTTATTTATTTT---------------------------------------------------------------------------------------------------------------------TTTTTTTTTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................TAG--------------------TC----A----------------------CCTTACGCA-TC-----------------------------------------CTTGTGGAA--AG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2821.0020200000000
.....ATGTT--------TA--ATGCGCTAG--------------------TC----A----------------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATTTATTTT---------------------------------------------------------------------------------------------------------------------TTTTTTTT..21200.0510010000000
droPer2
TACTAATTTT--------TT--ATATTTTTT--------------------TATTTTT----TAATAT-GGAT--------------T-----------------------------TATTATTA---------------T--ATACA---TTTATTTTTGTTAAATTTTATTTTTTTTG---------------------------------------------------------------------------TA--TTGTATAATTTTTTAG--TG--------------------------CTATAATTATTTT-----------------TTTTTTA------------ATA---------------------C-------TATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------TTCTTTATTTTTTGTATT----------TTTTATTATTGATTTATTATTATATTAATTTTTTTTTGCTAATTTTTA------------------------------------------------------------------TTTTTTTTTTCTGTAGT-------------------------------------------------------------------------------------------------------------------ATTATTATTATTATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TCATTTTTTC--------TA--ATATTTTTTCATTTCATTT---------------------------------------TCCTTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAAATATT-----------TTTC-TTATTTTATATTTTTTTTAAATATATAT-------------------------------------------------------------AT-------------------------ATATTTTTTTTTTTTTTTTGAATTT--TTTT-----------------TCTTTTCATTTTTTTT---------------------------------------------------------------TTAAATATGTATG----TATTTTTTTTTTTTTTTT--------------------------------------------------------------------------------------------------------------------TTGTTCTTTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TATCGAACAT--------AG--CTAAGTT------TG---------------------------------ATT-TTACT-TTTTAGACCATTTATTTTATAAATTT----TTGGCTA----------------------------------------------------------ATATTCCT-----CT---------------------------------------------------------------------TT---T---------------------------------------------------TAAA--TATCCAACTTTTTAAATTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTAATTTTCTAT---------TAAATTTTTTATCTT-------------------------TTTTTCTGTGT------------------------------------------------------------------------AGAAACGCCCCCATCAAGCGCCAAATTGCTGTGCGC----------------------------------------------------------------------------------------------CGTTTGCAAGGATG-----------------------CGTTC-------------------GGCAA------TCCCTGGGATSizeHit CountTotal NormTotal
No Reads
droKik1
TACATTTAAA--------AG-AGTTTTTTAGAGATTCAAAA---------------------------------------CCTCTTAGAAAATTT----------------------------------------------------------------------------------------TAAAACGATTTAAAATCTCTTAAAAGATTTGAAACCTTTAAAAAAGTTC-TGAAGA-------GATTTAAAATCTATT---T--------AG--A------------------------------------------------------------TTTA----------A-AAT---------------------A-------TATATTTTTTTTGCATTATTT--AAT------------GTTTTTTTTTTAATTT-C----------T--------------------------------AGTATATTTTATTATTATTATAAATTTTCTTA---------ACAATTTGTTACCCC-------------------------TTTTTCATCCTCCCCCCTT------------------------------------------------------------------------------TTTTCTCCCTGTGCATGTGTGT----------------------------------------------------------------------------------------------GGGTGGCAGCAGTG-----------------------CTAATGGGAAT-TTGTGTT---------G------T-----GCCTSizeHit CountTotal NormTotal
No Reads
droFic1
TAATTTTATT--------TG--AATTGAAACTC-------CGATATATTTTTG----TAGATTA----A-ATTC-TCTGTCTTCAATGATTT--------------ATTT------------------------------A--ATACA---AATATTCTTGTTATA--CAAATATTCTTG---------TTATTTACATTTGT-------------------------------------------------------------C-----AA--------------------------------------------------------------------------------GAGCGTTATATTTTTATTAAATA-----------------------------------------------------------------------------TGT------------------------------------------------------------------------------------------------------------------------ATTAT----------------------------------------------------------------------------------------------AAATTACACAATAATTCATATTATTTGTGAAAGGCTATATAAGCTACATT--------------------------------------------------------------------------------------------------------TCTTTT-----------TAACATTTTAAATTATSizeHit CountTotal NormTotal
No Reads
droEle1
TTTTTAGTTC--------TTCGACATTTAGTAATTGTAAAA---------------------------------------TATTTCAGAAT-------------------TACGGTTTAAATTTAAAT-----------------------------------------------AAAGCT------------------------------------------------------------------------------TC---C---------------------------------------------------ATGGGAACAATAAAA-------GTTA----------A-TAA---------------------AAAAATTTTAAATG----------TAACTTTTCTGTTTT---GTAATTTTTTTTTCAAAATT-C----------T--------------------------------TTTTGACTTGA---------------------TAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTGACAGTTCAGAATTA--------CG--CT---------------------TCTAATTTTASizeHit CountTotal NormTotal
No Reads
droRho1
TTTTACTAGC--------GA--AAAGCTATTAT-------T-AA-------A----------TG------AGGC-AGATAATTAAAATGACT-----------------------------------------TTTCTTAAA--AGGTAGT-------------------GTTTTAAATTTAT---TTCCAGCTAAGACTGTTGAAAAGTTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTACTTTTATTCTTTCT-----------------TGCTAAAATTCTTACTTGCTTCTAAGAA------------------------------------------------------------------TTCCTTTGTACAATTTAATTTGCTTCATAGGCTTTTTGGTAATAT-------------------------------------------------------------------------------------------AAAATATAATSizeHit CountTotal NormTotal
No Reads
droBia1
TATTTTTTGAT--TCAATTTTATTAA--------------T---------------------------------------GACCTT---------------AGTAG----TGGAGTCCACTGTCAATTAAACCTAT--------------------------------------------------------------------------------------------------------------------------------T-----TT--------------------------------------------------------------------------------GGGAGTTATTTCTTTAC----------------------------TGTATTAT-----------------------------------------------CGCA-TTACTTTTCATTTAATTGAAATAAGTAT-------------------------------------------------------------GT-------------------------TTATTTATTTTTTTCTTC---------------------------------------------------------------------------------------------------------------------------------TTTCTTTTCTTTTCTTTTTTTA--------------TTTTTTAATT----TTTTTAATT---------------ACATGCAGAATCTGCAGAA-----------C------------------------------ACTTTGSizeHit CountTotal NormTotal
No Reads
droTak1
TAATCATTTC--------TA--AAATGTTTTAT------------------AT----TCAAGTT---------------AAAAGAGTTAATA--------------TTTC------------------------------G--CATAC---------------------------AATTTT--------------------------------------------------T-TTAATT-------TATATAAAATATACC---CA--ATTTAAAAT-----TTA---------------------------------------------------------------------------------------------------------------ATATTCCCTTCTTGGATTTTAATATTA-------------AACT-AAGCATTTACAT--------------------TTAAATTAATAT-------------------------------------------------------------TT-------------------------ATATTATT----------------------------------------------------------------------------------------------------ATTCAATTA-ATAT----------------------------------------------------------------------------TT------AA---------TATTT---------------------AA---ATTTACTATTCCA-----------TTATTTTTTCAGTTATSizeHit CountTotal NormTotal
No Reads
droEug1
TAAATGTTGC--------CA--ATAGCTTTGAT------------------AT----TTAAATA----AA-AA-------T----------------------------------------------------TTTATAAAAA--TAAAAT-------------------GAAATAAAA---------A------------------------------------------------------------------TA--TT---TAAAATTCAAAAG-----TAAAAGTCTTTTATTTTTTCACGCCC--------ATATTAACTGAAA---------TAAA----------T-AAA---------------------A-------CAAATTTTTACTTTATCATTA--AAT------------GTGTTTATTTAAATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------TTCATTATTTCAGTGATTTTGTTTTCA--------------TTATATAATT-------------------------------------------------------------------------------------AAATCAATATSizeHit CountTotal NormTotal
No Reads
dm3
CCTAATCCCT--------TA--CC------------TGTAT---------------------------------------TCCTCAATGCTAGTTTTTGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------A-TAT---------------------T-------CGGACTTTTAATAATTTCTTTTTATTTTTTAGTATTT-------------ATTT-TAATGGTTATCC--------------------------------TCTGAATGTTT---------------------GCGTTAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------TTTACACAGCTT-CGAC----------------------------------------------------------------------------GT------CG---------TTGCC---------------------AA---ATCCATTTTTCGATGATATGTCTT------TGCCCCAAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTTTTTAGTATTT-------------ATTT-TAATGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................TTTTGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------A-TAT---------------------T-------CGGACTTTTAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCC---------------------AA---ATCCATTTTTCGATGATATGT...................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AATCCCT--------TA--CC------------TGTAT---------------------------------------TCCTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TAATGGTTATCC--------------------------------TCTGAATGTTT---------------------GCGT....................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACAGCTT-CGAC----------------------------------------------------------------------------GT------CG---------TTG....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CC------------TGTAT---------------------------------------TCCTCAATGCTAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CTAGTTTTTGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------A-TAT---------------------T-------CGGACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TCCCT--------TA--CC------------TGTAT---------------------------------------TCCTCAATGCTAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTTTTCGATGATATGTC..................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................C------------TGTAT---------------------------------------TCCTCAATGCTAGTTTTTGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TA--CC------------TGTAT---------------------------------------TCCTCAATGCTAGTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------------------------------------------------------------------------------------------------------------TTTACACAGCTT-CGAC----------------------------------------------------------------------------GT------CG---------TTGCC---------------------.............................................2611.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCC--------------------------------TCTGAATGTTT---------------------GCG.....................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TAATTTCTTTTTATTTTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
droSim2
TGGAATCATT--------TGCAGCATTTACCGGACTTATAT---------------------------------------CCCTACACAATACATTATAAAAGTTG----TGGGGTC----------------------------------------------------------GAATCT------------------------------------------------------------------------------TC---C---------------------------------------------------AAA-------------------TCTG----------A-TAA---------------------G-------CAAATTTTTATTAATTTACTTCGAATGTTTTATTCTG-------------ATTT-T----------T--------------------------------TTTACATGTTG---------------------AAATTAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------------------------------------------------------------------------ATCATTTCGATACTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................TCTG----------A-TAA---------------------G-------CAAATTTTTATTAATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25110.0010001000000000000000
..................TGCAGCATTTACCGGACTTATAT---------------------------------------CCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2616.00600400010010000000
........................................................................................................TG----TGGGGTC----------------------------------------------------------GAATCT------------------------------------------------------------------------------TC---C---------------------------------------------------AAA-------------------TCTG----------A-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.00500000021110000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTATTCTG-------------ATTT-T----------T--------------------------------TTTACATGT...............................................................................................................................................................................................................................................................................................................................................................................2714.00400000000130000000
..........................................................................................TACATTATAAAAGTTG----TGGGGTC----------------------------------------------------------GAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.00300000010010010000
.....TCATT--------TGCAGCATTTACCGGACTTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00300100000101000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................T-T----------T--------------------------------TTTACATGTTG---------------------AAATTAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------------------------------------------------------------------------A.............2613.00300000002100000000
.........T--------TGCAGCATTTACCGGACTTATAT---------------------------------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200000000000000
....................................................................................................................................................................................T------------------------------------------------------------------------------TC---C---------------------------------------------------AAA-------------------TCTG----------A-TAA---------------------G-------CAAATTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000000200000000
...................................................................................................AAAGTTG----TGGGGTC----------------------------------------------------------GAATCT------------------------------------------------------------------------------TC---C---------------------------------------------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000000002000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTG-------------ATTT-T----------T--------------------------------TTTACATGTTG---------------------AAAT....................................................................................................................................................................................................................................................................................................................................................2612.00200000000110000000
..........................................................................................TACATTATAAAAGTTG----TGGGGTC----------------------------------------------------------GA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000010100000000
........TT--------TGCAGCATTTACCGGACTTATAT---------------------------------------CC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200200000000000000
TGGAATCATT--------TGCAGCATTTACCGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000010000010000
..............................................................................................................TGGGGTC----------------------------------------------------------GAATCT------------------------------------------------------------------------------TC---C---------------------------------------------------AAA-------------------TCTG----------A-TA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
TGGAATCATT--------TGCAGCATTTACCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
.....TCATT--------TGCAGCATTTACCGGACTTAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.....TCATT--------TGCAGCATTTACCGGACTTATAC---------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
...............................................................................................................GGGGTC----------------------------------------------------------GAATCT------------------------------------------------------------------------------TC---C---------------------------------------------------AAA-------------------TCTG----------A-TA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
..................TGCAGCATTTACCGGACTTATAT---------------------------------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCTG-------------ATTT-T----------T--------------------------------TTTACATGTTG---------------------AAATTA..................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------------ATTT-T----------T--------------------------------TTTACATGTTG---------------------........................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCTG-------------ATTT-T----------T--------------------------------TTTACATGTTG---------------------A.......................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
...................................................................................TACACAATACATTATAAAAGTTG----T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------TTTACATGTTG---------------------AAA.....................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
..................TGCAGCATTTACCGGACTTATAT---------------------------------------CC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
..........................TTACCGGACTTATAT---------------------------------------CCCTACACAATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
..................................................................................................................................................................................TCT------------------------------------------------------------------------------TC---C---------------------------------------------------AAA-------------------TCTG----------A-TAA---------------------G-------CAAATTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
........TT--------TGCAGCATTTACCGGACTTATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
.........................................................................................................G----TGGGGTC----------------------------------------------------------GAATCT------------------------------------------------------------------------------TC---C---------------------------------------------------AAA-------------------TCTG----------A-T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
.....TCATT--------TGCAGCATTTACCGGACTTATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
........................................................................................................TG----TGGGGTC----------------------------------------------------------GAATCT------------------------------------------------------------------------------TC---C---------------------------------------------------AAA-------------------TCTG----------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
........................................................................................................TG----TGGGGTC----------------------------------------------------------GAATCT------------------------------------------------------------------------------TC---C---------------------------------------------------AAA-------------------TCTG----------A-TA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000010000000
........TT--------TGCAGCATTTACCGGACTTATAT---------------------------------------CCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCTG-------------ATTT-T----------T--------------------------------TTTACATGTTG---------------------AAATT...................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTG-------------ATTT-T----------T--------------------------------TTTACATGTTG---------------------AAATT...................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
.................................................................................................TAAAAGTTG----TGGGGTC----------------------------------------------------------GAATCT------------------------------------------------------------------------------T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------TTTACATGTTG---------------------AAATTAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------------------------------------------------------------------------A.............2411.00100000010000000000
TGGAATCATT--------TGCAGCATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
.................................................................................................TAAAAGTTG----TGGGGTC----------------------------------------------------------GAATCT------------------------------------------------------------------------------TC---C---------------------------------------------------AAA-------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000001000000
................................................................................................................................................................................AATCT------------------------------------------------------------------------------TC---C---------------------------------------------------AAA-------------------TCTG----------A-TG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50101000000000000000
droSec2
TGGAATCATT--------TGCAGCATTTACCGGACTTATAC---------------------------------------CCCTACACAATACATTATAAAAGTTG----TGGGGTC----------------------------------------------------------GAATCT------------------------------------------------------------------------------TC---C---------------------------------------------------AAGA--CGGTAGACGGTCCAAATCTG----------A-TAA---------------------G-------CAAATTTTTATTAATTTACTTCGAATGTTTTATTCTG-------------ATTT-T----------T--------------------------------TTTACATGTTG---------------------AAATTAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------------------------------------------------------------------------ATCATTTCGATACTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TGATTTTTTT--------CA--TTTTATTAT--------------------TT---------------G-ATCT-ACTAATTTCAATCGATT--------------TTTC------------------------------A--AAGTC---------------------------AATGCT------------------------------------------------------------------------------CC---C---------------------------------------------------AAGCCACAAGAAATGGCTCGCTC---------------------------------------ACAATTTTTAAACCTGCATTGATTTATTCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------TTTTATTATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AAACTGTCAC--------GG--CCACACTTT--------------------TAAAAAA----TGTTGT-GATA-TTGTT----------------------------------------------------------------------TT-------------------TTTATATATG---------------------------------------------------------------------------TA--TCTTGTAAATTTCTAG--AG--------------------------ATTTTCC----AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACTTTTTGCCACGCGCACT-------------------------TTTTTTACTTTTTTTTC----------TTTTTATTATTATTTTTACTTTATATT----------------TTTATT------------------------------------------------------------------TTATTTATTTTTATTTTATT---------------------------------------------------------------------------------------------TTTTAC-----------CTATATTTCAGAAAATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 10:19 PM