dmo_428

Name	Class	Family	Strand
Homo6	DNA	hAT-Pegasus	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GATTTAGCCATGTCTGTCCGTCCGTCCGTGTGTAAGAACGCGTCGATCTCTGAAGATATAAGAGCTAGAGTCTTAAAATGTTGTTTTTTCCTAGCTATAAGCATATTTGCCTAACAGTTGTGTTTTCAAAATACTTTTGGCGTCGCCTGTATATATAATAAATATGGTGATTAATATTGTTAAATGATTAATATATTTCAGAAGGTCAAACGTGATGATCTGCTGAAGGAATGGGCGAGCCTACGTAATTG ************************************************(((((((((((.((((((......................))))))....(((....))).......))))))))))).............((((((.((((.........)))))))))).(((((.(((((....))))))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	M046 female body
............................................................................................................................................................................................................GTCAAACGTGATGATCTGCTGA.........................	22	0	2	0.50	1	1	0
.....................................................................................................................................................................................................................GATGATCTGCTGAAGGAATGGGC...............	23	0	2	0.50	1	1	0
...TTTTCAATGTCTGTCCGTCCGTCCG...............................................................................................................................................................................................................................	25	3	8	0.13	1	0	1
...TGAGCCATGTCTGTCTGTCCG...................................................................................................................................................................................................................................	21	2	15	0.07	1	0	1

CTAAATCGGTACAGACAGGCAGGCAGGCACACATTCTTGCGCAGCTAGAGACTTCTATATTCTCGATCTCAGAATTTTACAACAAAAAAGGATCGATATTCGTATAAACGGATTGTCAACACAAAAGTTTTATGAAAACCGCAGCGGACATATATATTATTTATACCACTAATTATAACAATTTACTAATTATATAAAGTCTTCCAGTTTGCACTACTAGACGACTTCCTTACCCGCTCGGATGCATTAAC ************************************************(((((((((((.((((((......................))))))....(((....))).......))))))))))).............((((((.((((.........)))))))))).(((((.(((((....))))))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head	V049 head
.....................................................................................................GTATAAACGGACTGTCATCAC.................................................................................................................................	21	2	2	0.50	1	1	0
.....................................................................................................GTATAAACGGACTGTCATCAT.................................................................................................................................	21	3	3	0.33	1	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6308:1440075-1440325 +	dmo_428	GATTTAGCCATGTCTGTCCGTCCGTCCGT------------GTGTAAGAAC--------------------GCGTCGAT--CTCTGAAGAT-----------ATA----AGAGCTAGAGTCTTAAAATGTT---------GTTTTTTCCTA-GCTATAA--------------G-----CATATT-----------------------------------------------------------------------------------------------------------------------------------------------------TGCCTAA--CAGTTGTGTTTTCAAAA-----TAC--------------------TT------------T-TG-----------------------------GCGTCGCCTGTATATATA--ATAA----------------AT------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTGATTAATATTGTT-----------------------------------------------------------AAATGATTAATAT-------ATTTCAGAAGGTCAAACG------------------TGATGATCTGCTGAAGGAATGGGCGAGCCTACGTAATTG
droVir3	scaffold_13246:144599-144801 -		GATTTAGCCATGTCCGTCTGTCCGTCCGT------------ATGTATGAAC--------------------GCAAGGAT--CATAGAACCT------------------AGACCTAGAGACATGAAATTTTAGCCCT--AGCTCCTCCTAG-TCCA--------------CGCGCAGATCGAGTTTA--------------------------------------------------AT------------------------------------------------------------------------------------------------------------TGCGATATTCGA-------------------------GTACTT------------G-TC-----------------------------GTGTTTCCAA--------------GAAATCGATAAA-----A------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGA-----------------------------------------------TATTGAAATCAAA-------------------------------TCAAATATAAAG------------------------------------------TATCTTTC-------------A
droGri2	scaffold_14853:6133188-6133425 +		GATTTAGCCGTCTCTTTTT----------------------------GAAC--------------------GAGCCGAT--CTCAGAGAAT-----------AAA----TGATATAAGGACTTCAATTTTGGAATAA--AGTTTTTCGTAT-ACCA--------------TACGTAGATCAAGTTTA--------------------------------------------------TTT-AA-----------------------------------------------------TTTTATCGATA-------------------------------------------------------------------------------ACTC------------T-TG-----------------------------ATGTTGCTTACTTACTTGACATAT----------------GTGTGAGAACTTTGCTA-CGATTATTACC---AACAGATAATTCATTTAAAA--CACATCG-AG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAACGACTTGGCAAGCGTTAACAGTTT
droWil2	scf2_1100000004523:8443-8669 -		CAAATAGCCATGTCTGTCCGTCCGTCTGG----------------ATCAAC--------------------GCAAACTC--CTCCTAGACC-----------GTT----TGAGCTACAGAGCTGAAATTTTGCATGT--AGCTCCCATACA-AACA-----------------G-----CAAAGTCA-C-----------------------------------------------------------------------------------GA------------------------------------------------------------------A--CAGTG-ACTTTTCTTAA-----TAGCTTCGTTATTTTCTGAGCTATTGTCGTGAAATTT-A-------------------------------------------------------ATATTGGTGAGTTAAT-------------------TACACATAT-----------------AAACGACAATGCC-------------------------------------------------AAAT----TTGATCAAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGGTG-------------A
dp5	XR_group6:912504-912760 +		GATATAGCCATGTCTGTCTGTCCGTCCGT------------CCCGATGAGC--------------------GCCTAGAT--TTTAGATACA-----------ATA----AGAGCTAGAGTAATCAAATTTGGTATTC--AGACTCCTGTGATA-TC--A-----------CACTAT-TTCAA--------------------------------------------------GTGTATTTCAAAATTACACCCCGCCTCTTTCCGC----------------------------------------CACCACAAAAAAT--------------------------------------GA-------------------------AAATCT------------G-TG-----------------------------GCATT--CGA--------------GAAATCTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAA-CTAACATATC----------------------TACGAGATCAGAT----------------CA------------------TTATTATAGCCAGAAGGAACCAATGAAACTAC---GCAA
droPer2	scaffold_3:3765345-3765582 -		GATATACCCATGTCTGTCTATCCGTCTTG----------------TTTGAT--------------------ACCTAGTT--CTCAGAGACT-----------ATA----AGAGCTAGAGCAAACCAATTTTGTATCC--AGACCCCTGTGATA-TC--A-----------TACAGA-AACAA--------------------------------------------------GTGTATTTCAAAATTTGTGCATGCACCCTTCCGC----------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------AAAGTA--AAAA----------------ATTCTGTGGCATCAATAATTTTAAAGAT-----------------ACAAGAATACCCGAAGATTCAAA---------------------------------------------------------------------ATGATA-------------------------------------------------------------------AAGAA-TTATAGTGTC----------------------TACTA-------------------------------------------------------------------------------TATT
droAna3	scaffold_12948:494756-494949 -		GATAAAGCCATCTCCGTGCGTTTGTGTTT----------------ATAAAC--------------------GTTTATAT--CTCAGGGACT-----------CTACCAAAAAGATGGAGCTCTAAGATTTTGCTTTT--AGACTTCTATAA-TAAC--------------CACGCAGCTACATTTTT--------------------------------------------------TT-TAAAGCTCCA----------------------------------------------GTATAATGACA-------------------------------------------------------------------------------AGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGATAGCAA-------------------TCTATTT----------------------------------------CAAAGGCCAATCT-------ATTTCTGGAATACA----------------------------------------------A-------------A
droBip1	scf7180000395985:3369-3612 -		GATATGAGCTTGTCCGTTTGTCCGTCGGTCCGTCTGTCTGTCTGTTTCTAC--------------------GCGAACTAGTCTCTCA--GT-----------TTT----AAAGCTATCGACTTGAAACTTTGCACAC--ACCCCCTT------------------------------------------------------------------------TCCTTTGCACGCAGTATATACGATGG-----------------CTCACAGCTTAAAGTATGCAGTGCATACTTTTAACTTCAAAC-------------------------------------------------------------------------------------------------------------------------GCCTATAGCGGTAAAA------C---T--------------------ATA-----------------------------------------------AAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGGAATCAACAAGGTCCCAAGTAAAAGATTAACTT------------------------------------------------------------------------------ATTT
droKik1	scf7180000301506:5592-5837 -		GATCTAGCCATGTCCGTCTGTCTGTCTGT----------------TTCTAA--------------------GCAAACTAGTCCCTCA--GT-----------TTT----AAAGCTATCTGAATGAAACTTTGCATCTTTTGCAA----C---T-TT--T-----------TAGAAA-AA-----------------------------------------------------------------------------------------------------------------------------------------------------------TAATTATAACTTTTCTGTTTTTAAA------CAT---------------------------------------------------------------------------------------------------------------------------------------T---TTTGCATAATTT-TTAGAT----------ATGG------------CCATTTTATATTATTTCAGAATTTTATTAAAAAT----TTTATGAAAATCAGACGACTATATGATATAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCATAGGAACGATTGG------GAAATTA
droFic1	scf7180000453932:621979-622097 -		GATCTATGTATGTCTGTCTGTCCGTCCGT----------------ATGAAC--------------------GTCAAATT--CTCGGAAATT-----------ATA----AAAGATTAAAAAT-------------GT--AACTTCTTATTA-CTCGTAAGCAAGAATATTTGTGTCACGCCCATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT
droEle1	scf7180000488538:2081-2274 +		GATCTAGCCATGTTCGTCAGTCCGTCTGC------------CCGTCTGCTCGTCTGCCCGTCCGTTTCTATGCAAACTAGTTTCTCA--GT-----------TTT----AAAGCTATCTGCATGAAACTTTCTC------------------------------------------------------------------------------------------------------------------------------------------AAAAGCTGTTTTAAATTTTTTTTAGTTCTTTGACA-------------------------------------------------------------------------------AAT--------------A-------------------------------------------------------GTAATGGTTAAATATT-----------------------------------------------TAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTAAATTACT-------------------------------TCATTCTGAAAGT-----------------------------------------------TA-------------A
droRho1	scf7180000779337:48210-48425 +		GATATAGCCATGTCCGTCTATCCGTCTGT----------------TTCTAC--------------------ATTATTTA------CA--TTTTAAACGCTAGCTACAAAAGAAACGAAATTTA-------TAAATGT--TGTTGCTTTCG-----------------------------------------------------AATAACTATGAGTTGT---------------------------------------T----------------------------------------CT---------------------------------------------CTCTGTTTTCAAC------C----------------------T------------------------------TGAGGTGACTATAACAATAATA------T---T--------------------A-----------------------TTTAAGCC---TTCAAATAATGT-TTAAGAATATTCTAAG-TTCTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC------------------------------------------TGAAAGAATCAGCG-------------A
droBia1	scf7180000302377:1865624-1865883 +		GATCTAGCCATGTCCGTCCGTCTGTCCGT------------TCGTTTCTAC--------------------GCAAACTAGTCTCTTA--GT-----------TTT----AAAACTATCAGGCTGAAACTTTCCCAAC------------------------------------------------------------------------------------------------TATGTCTAATAG-----------------CTCCCATC----------------------------------------GGAATAATCGAAAAAACATGTTTTTAATT--------------------A-----TAT--------------------CT------------T-TG-----------------------------GCGTTAACCCTACGCTT----------------------------------------------------------------------GGAA----------ATAA------------CATTTTTTAATTAGTTCTGAATTTTGAATTTAATTTTATTTATTAAAATCGGACGACTATATCATA-AGC--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCATAGGAACGATCGA-----------AC
droTak1	scf7180000415212:92868-93135 -		GATCTAGTCATGTCCGTCCGTCTATCTGT----------------ATGAAC--------------------GCTGAGAT--CTCGGAAACT-----------ACA----AATGCTAGAAGGTTGAGATTTTCCACACTATCGAT----G---T-TT----------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------TGGCTA-------------------------TCG--------------------AT------------T-TTTTAATAACCCTAATGAGCTGCCGATCACGGTGATGTATATACACACAAAAAAA----------------ACTTGGTAAAATTATTA-TTATAAAAATT---AACAAATAATTG-TCAAAC----------ATGC------------CCCAACCATAAAAATTGTCAGTTCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAGTAAATTGTTACTCTTACGTAATTC
droEug1	scf7180000409885:105151-105405 -		GATTGAGCGATTTACGTCTGTCCGTCCGTCCATCCGTCTGTCTGTATGAAC--------------------GCTGAGAT--CTCAGGAACT-----------ATA----AGAGATATAAAGTTGATATTAAGCATGA--AGATTCTTATGG-TCCA--------------TTTCAA----------------------------------------------------CATAGTGTATGTCTTAGTTTGACCTTG----------------------------------------------------------------------------------------------------CATAA-----TAT--------------------TT------------T-TG-----------------------------TCATTATCTATTGATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAAGAA-TTTTTAAATCGAC-------------------T---ACTGCGATT----------------CTTCTTGTTAAATATGACTATGA------------TGATCAAGTAAATTAAT---ATTG
dm3	chr2RHet:1721890-1722064 -		GATCTGGCCGTGTCTGTCTGTCCGTCCGA--------------------AC--------------------GTCGCGAT--ACCAGGACCT-----------ATA----AAAGCTCAAAGAA---------------------CCTCAAGA-CGTA--------------GACGCAGCGTAACATTGTTGACCCACACCC-----------------ATTC-----------------------------------------------------------------------------------------------------------------------------TTACGCTCTCAAACTGCCC-------------------AAAAC---------------TG-----------------------------GC-ACACCCGCACATTTA--AAAA----------------AT----------------------------------------GT-------------------------------------------------------------------------------------------------------TTTGATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTT
droSim2	2l:21311395-21311587 +		GGCCTGGCCATGTCCTTCTGTCTGTCCGT----------------ATG-AC--------------------GTTGAGAT--ATCGGAAACT-----------ATA----AAAGCTAAAAAGTTGAGC---------------TTTCTACAA-TATA--------------TATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------TATATAT--CAATTTTATTATTTATT-----TAT--------------------TT------------T-T---------------------------------TTCCCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTTGATAGGCCAAAGAACAATTTAAATTGCT-------------------T------------ATTTT-----------------ATTAAATATATTTTTTA-------------------------------AGCTC
droSec2	scaffold_93:44475-44684 -		GATCTAGCCATGTCCATCTGTCCGTTTGT------------CCGTATGAAC--------------------GTCGAGGT--CTCAGGAACT-----------ATA----AAAGCTAGAAGGTTAAGATTCAGCATAC--AGATTTTAAAGA-CAAA--------------GACGCAGCGCAAGTTTGTTGACCCATGTTTTTGAAATACTTGATGATAT---------------------------------------T----------------------------------------CTTTCACA--------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTAATTATTATTATA-----------------------------------------------------------TAATGTTTTTCTT-------ATTTTCGTAAATTA----------------------------------------------A-------------A
droYak3	2R:3770356-3770543 +		GATCTGGCCATTTACGTCTGTCCGTCCGT----------------ATTAAC--------------------GC-GAGAT--CTCAACCATT-----------TTT----ATCGATATACCAAAAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTT-----------------------------------------------------------------------------------------------------------------------------------------------GCTTGGTA-AATTATTT-GTATATAAATTGTAATCAAATATATT-TTAAAGATATTTACAG-TGCTGCACTGTTGTGTATGTGTTGACAGGT------------------------------------------------------------------------TTTGA-----------------------------------------------TTTTGTAATT---------------AAATGA----------------------------------------------------------------------------------------T
droEre2	scaffold_4929:25618964-25619145 -		GATCTGGACATTTTCGTCTGCCCGTCCGT----------------ATGAAC--------------------GTCGAGAT--CTCAGGAACT-----------ATA----AAAGCTG--------AGATTAAACATGC--AGATTCCACAGA-CATA--------------GACGCAGCGCAAATTTT-T-----------------------------------------------------------------------------------GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA----------------AT----------------------------------------GT-------------------------------------------------------------------------------------------------------TTTGATATATTTTCATTATTTTTATTAGTCTTTTAAATTTATATCGATT---------------------------------------------------------T-------ATATCGAAA--------------------------------------------------------------AATC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GATTTAGCCATGTCTGTCCGTCCGTCCGT------------GTGTAAGAAC--------------------GCGTCGAT--CTCTGAAGAT-----------ATA----AGAGCTAGAGTCTTAAAATGTT---------GTTTTTTCCTA-GCTATAA--------------G-----CATATT-----------------------------------------------------------------------------------------------------------------------------------------------------TGCCTAA--CAGTTGTGTTTTCAAAA-----TAC--------------------TT------------T-TG-----------------------------GCGTCGCCTGTATATATA--ATAA----------------AT------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTGATTAATATTGTT-----------------------------------------------------------AAATGATTAATAT-------ATTTCAGAAGGTCAAACG------------------TGATGATCTGCTGAAGGAATGGGCGAGCCTACGTAATTG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAACG------------------TGATGATCTGCTGA.........................	22	2	0.50	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCTGCTGAAGGAATGGGC...............	23	2	0.50	1	0	0	0	0	0	1

droVir3

GATTTAGCCATGTCCGTCTGTCCGTCCGT------------ATGTATGAAC--------------------GCAAGGAT--CATAGAACCT------------------AGACCTAGAGACATGAAATTTTAGCCCT--AGCTCCTCCTAG-TCCA--------------CGCGCAGATCGAGTTTA--------------------------------------------------AT------------------------------------------------------------------------------------------------------------TGCGATATTCGA-------------------------GTACTT------------G-TC-----------------------------GTGTTTCCAA--------------GAAATCGATAAA-----A------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGA-----------------------------------------------TATTGAAATCAAA-------------------------------TCAAATATAAAG------------------------------------------TATCTTTC-------------A	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAA--------------GAAATCGATAAA-----A------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGA-----------------------------------------------TA......................................................................................................................	27	18	0.11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TAGCCATGTCCGTCTGTCCGTCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CATGTCCGTCTGTCCGTCCGT------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CCGTCCGT------------ATGTATGAAC--------------------GCAAGGAT--C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CGTCCGT------------ATGTATGAAC--------------------GCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TAGCCATGTCCGTCTGTCCGTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------GAAATCGATAAA-----A------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGA-----------------------------------------------T.......................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CTGTCCGTCCGT------------ATGTATGAAC--------------------GCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAA--------------GAAATCGATAAA-----A------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCG........................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TAGCCATGTCCGTCTGTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GTCTGTCCGTCCGT------------ATGTATGAAC--------------------GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TCCGTCCGT------------ATGTATGAAC--------------------GCAAGGAT--C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GATTTAGCCGTCTCTTTTT----------------------------GAAC--------------------GAGCCGAT--CTCAGAGAAT-----------AAA----TGATATAAGGACTTCAATTTTGGAATAA--AGTTTTTCGTAT-ACCA--------------TACGTAGATCAAGTTTA--------------------------------------------------TTT-AA-----------------------------------------------------TTTTATCGATA-------------------------------------------------------------------------------ACTC------------T-TG-----------------------------ATGTTGCTTACTTACTTGACATAT----------------GTGTGAGAACTTTGCTA-CGATTATTACC---AACAGATAATTCATTTAAAA--CACATCG-AG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAACGACTTGGCAAGCGTTAACAGTTT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

CAAATAGCCATGTCTGTCCGTCCGTCTGG----------------ATCAAC--------------------GCAAACTC--CTCCTAGACC-----------GTT----TGAGCTACAGAGCTGAAATTTTGCATGT--AGCTCCCATACA-AACA-----------------G-----CAAAGTCA-C-----------------------------------------------------------------------------------GA------------------------------------------------------------------A--CAGTG-ACTTTTCTTAA-----TAGCTTCGTTATTTTCTGAGCTATTGTCGTGAAATTT-A-------------------------------------------------------ATATTGGTGAGTTAAT-------------------TACACATAT-----------------AAACGACAATGCC-------------------------------------------------AAAT----TTGATCAAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGGTG-------------A	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................TACAGAGCTGAAATTTTGCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.45	9	0	0	0	9	0
.AAATAGCCATGTCTGTCCGTCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	17	0.12	2	0	1	0	1	0
..............................................................................C--CTCCTAGACC-----------GTT----TGAGCTACAGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	9	0.11	1	0	0	0	1	0
..............................................................................................................................................TCCCATACA-AACA-----------------G-----CAAAGTCA-C-----------------------------------------------------------------------------------G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCC-------------------------------------------------AAAT----TTGATCAAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T....................	21	20	0.10	2	0	0	0	0	2
.............................................................................................................................................................................................................................................................................................................................................................................TAGCTTCGTTATTTTCTGAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAT-------------------TACACATAT-----------------AAACGACA...........................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	0	0	1	0
CAAATAGCCATGTCTGTCCGTCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	15	0.07	1	0	1	0	0	0
.............................................ATCAAC--------------------GCAAACTC--CTCCTAGACC-----------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0

dp5

GATATAGCCATGTCTGTCTGTCCGTCCGT------------CCCGATGAGC--------------------GCCTAGAT--TTTAGATACA-----------ATA----AGAGCTAGAGTAATCAAATTTGGTATTC--AGACTCCTGTGATA-TC--A-----------CACTAT-TTCAA--------------------------------------------------GTGTATTTCAAAATTACACCCCGCCTCTTTCCGC----------------------------------------CACCACAAAAAAT--------------------------------------GA-------------------------AAATCT------------G-TG-----------------------------GCATT--CGA--------------GAAATCTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAA-CTAACATATC----------------------TACGAGATCAGAT----------------CA------------------TTATTATAGCCAGAAGGAACCAATGAAACTAC---GCAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....TAGCCATGTCTGTCTGTCCGTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	10	0.50	5	0	1	0	0	0	0	0	4	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAT----------------CA------------------TTATTATAGCCAGAAG.......................	24	2	0.50	1	0	0	0	0	0	0	0	0	1	0
..........TGTCTGTCTGTCCGTCCGT------------CC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.45	9	0	9	0	0	0	0	0	0	0	0
.....AGCCATGTCTGTCTGTCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	4	0	0	0	0	0	0	0	0
...........GTCTGTCTGTCCGTCCGT------------CC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	2	0	0	0
........CATGTCTGTCTGTCCGTCCGT------------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	2	0
..........TGTCTGTCTGTCCGTCCGT------------CCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	13	0.08	1	0	1	0	0	0	0	0	0	0	0
............TCTGTCTGTCCGTCCGT------------CCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	16	0.06	1	0	1	0	0	0	0	0	0	0	0
.........ATGTCTGTCTGTCCGTCCGT------------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....TAGCCATGTCTGTCTGTCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................GACTCCTGTGATA-TC--A-----------CACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
GATATAGCCATGTCTGTCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

GATATACCCATGTCTGTCTATCCGTCTTG----------------TTTGAT--------------------ACCTAGTT--CTCAGAGACT-----------ATA----AGAGCTAGAGCAAACCAATTTTGTATCC--AGACCCCTGTGATA-TC--A-----------TACAGA-AACAA--------------------------------------------------GTGTATTTCAAAATTTGTGCATGCACCCTTCCGC----------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------AAAGTA--AAAA----------------ATTCTGTGGCATCAATAATTTTAAAGAT-----------------ACAAGAATACCCGAAGATTCAAA---------------------------------------------------------------------ATGATA-------------------------------------------------------------------AAGAA-TTATAGTGTC----------------------TACTA-------------------------------------------------------------------------------TATT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................AGACT-----------ATA----AGAGCTAGAGCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0

droAna3

GATAAAGCCATCTCCGTGCGTTTGTGTTT----------------ATAAAC--------------------GTTTATAT--CTCAGGGACT-----------CTACCAAAAAGATGGAGCTCTAAGATTTTGCTTTT--AGACTTCTATAA-TAAC--------------CACGCAGCTACATTTTT--------------------------------------------------TT-TAAAGCTCCA----------------------------------------------GTATAATGACA-------------------------------------------------------------------------------AGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGATAGCAA-------------------TCTATTT----------------------------------------CAAAGGCCAATCT-------ATTTCTGGAATACA----------------------------------------------A-------------A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................................................................................................................................ACA-------------------------------------------------------------------------------AGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGATAGCAG-------------------C.............................................................................................................................................	18	14	0.07	1	0	1	0	0	0	0

droBip1

GATATGAGCTTGTCCGTTTGTCCGTCGGTCCGTCTGTCTGTCTGTTTCTAC--------------------GCGAACTAGTCTCTCA--GT-----------TTT----AAAGCTATCGACTTGAAACTTTGCACAC--ACCCCCTT------------------------------------------------------------------------TCCTTTGCACGCAGTATATACGATGG-----------------CTCACAGCTTAAAGTATGCAGTGCATACTTTTAACTTCAAAC-------------------------------------------------------------------------------------------------------------------------GCCTATAGCGGTAAAA------C---T--------------------ATA-----------------------------------------------AAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGGAATCAACAAGGTCCCAAGTAAAAGATTAACTT------------------------------------------------------------------------------ATTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GATCTAGCCATGTCCGTCTGTCTGTCTGT----------------TTCTAA--------------------GCAAACTAGTCCCTCA--GT-----------TTT----AAAGCTATCTGAATGAAACTTTGCATCTTTTGCAA----C---T-TT--T-----------TAGAAA-AA-----------------------------------------------------------------------------------------------------------------------------------------------------------TAATTATAACTTTTCTGTTTTTAAA------CAT---------------------------------------------------------------------------------------------------------------------------------------T---TTTGCATAATTT-TTAGAT----------ATGG------------CCATTTTATATTATTTCAGAATTTTATTAAAAAT----TTTATGAAAATCAGACGACTATATGATATAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCATAGGAACGATTGG------GAAATTA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GATCTATGTATGTCTGTCTGTCCGTCCGT----------------ATGAAC--------------------GTCAAATT--CTCGGAAATT-----------ATA----AAAGATTAAAAAT-------------GT--AACTTCTTATTA-CTCGTAAGCAAGAATATTTGTGTCACGCCCATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GATCTAGCCATGTTCGTCAGTCCGTCTGC------------CCGTCTGCTCGTCTGCCCGTCCGTTTCTATGCAAACTAGTTTCTCA--GT-----------TTT----AAAGCTATCTGCATGAAACTTTCTC------------------------------------------------------------------------------------------------------------------------------------------AAAAGCTGTTTTAAATTTTTTTTAGTTCTTTGACA-------------------------------------------------------------------------------AAT--------------A-------------------------------------------------------GTAATGGTTAAATATT-----------------------------------------------TAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTAAATTACT-------------------------------TCATTCTGAAAGT-----------------------------------------------TA-------------A	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GATATAGCCATGTCCGTCTATCCGTCTGT----------------TTCTAC--------------------ATTATTTA------CA--TTTTAAACGCTAGCTACAAAAGAAACGAAATTTA-------TAAATGT--TGTTGCTTTCG-----------------------------------------------------AATAACTATGAGTTGT---------------------------------------T----------------------------------------CT---------------------------------------------CTCTGTTTTCAAC------C----------------------T------------------------------TGAGGTGACTATAACAATAATA------T---T--------------------A-----------------------TTTAAGCC---TTCAAATAATGT-TTAAGAATATTCTAAG-TTCTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC------------------------------------------TGAAAGAATCAGCG-------------A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GATCTAGCCATGTCCGTCCGTCTGTCCGT------------TCGTTTCTAC--------------------GCAAACTAGTCTCTTA--GT-----------TTT----AAAACTATCAGGCTGAAACTTTCCCAAC------------------------------------------------------------------------------------------------TATGTCTAATAG-----------------CTCCCATC----------------------------------------GGAATAATCGAAAAAACATGTTTTTAATT--------------------A-----TAT--------------------CT------------T-TG-----------------------------GCGTTAACCCTACGCTT----------------------------------------------------------------------GGAA----------ATAA------------CATTTTTTAATTAGTTCTGAATTTTGAATTTAATTTTATTTATTAAAATCGGACGACTATATCATA-AGC--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCATAGGAACGATCGA-----------AC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GATCTAGTCATGTCCGTCCGTCTATCTGT----------------ATGAAC--------------------GCTGAGAT--CTCGGAAACT-----------ACA----AATGCTAGAAGGTTGAGATTTTCCACACTATCGAT----G---T-TT----------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------TGGCTA-------------------------TCG--------------------AT------------T-TTTTAATAACCCTAATGAGCTGCCGATCACGGTGATGTATATACACACAAAAAAA----------------ACTTGGTAAAATTATTA-TTATAAAAATT---AACAAATAATTG-TCAAAC----------ATGC------------CCCAACCATAAAAATTGTCAGTTCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAGTAAATTGTTACTCTTACGTAATTC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GATTGAGCGATTTACGTCTGTCCGTCCGTCCATCCGTCTGTCTGTATGAAC--------------------GCTGAGAT--CTCAGGAACT-----------ATA----AGAGATATAAAGTTGATATTAAGCATGA--AGATTCTTATGG-TCCA--------------TTTCAA----------------------------------------------------CATAGTGTATGTCTTAGTTTGACCTTG----------------------------------------------------------------------------------------------------CATAA-----TAT--------------------TT------------T-TG-----------------------------TCATTATCTATTGATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAAGAA-TTTTTAAATCGAC-------------------T---ACTGCGATT----------------CTTCTTGTTAAATATGACTATGA------------TGATCAAGTAAATTAAT---ATTG	Size	Hit Count	Total Norm	Total
No Reads

dm3

GATCTGGCCGTGTCTGTCTGTCCGTCCGA--------------------AC--------------------GTCGCGAT--ACCAGGACCT-----------ATA----AAAGCTCAAAGAA---------------------CCTCAAGA-CGTA--------------GACGCAGCGTAACATTGTTGACCCACACCC-----------------ATTC-----------------------------------------------------------------------------------------------------------------------------TTACGCTCTCAAACTGCCC-------------------AAAAC---------------TG-----------------------------GC-ACACCCGCACATTTA--AAAA----------------AT----------------------------------------GT-------------------------------------------------------------------------------------------------------TTTGATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................ACCT-----------ATA----AAAGCTCAAAGAA---------------------CCTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATCTGGCCGTGTCTGTCTGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................TA----AAAGCTCAAAGAA---------------------CCTCAAGA-CGGC--------------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................A---------------------CCTCAAGA-CGTA--------------GACGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................TCCGA--------------------AC--------------------GTCGCGAT--ACCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TTC-----------------------------------------------------------------------------------------------------------------------------TTACGCTCTCAAACTGCCC-------------------AAAAC---------------.......................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CCGTGTCTGTCTGTCCGTCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GA-CGTA--------------GACGCAGCGTAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----------------------------------------GT-------------------------------------------------------------------------------------------------------TTTGATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC..	15	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GGCCTGGCCATGTCCTTCTGTCTGTCCGT----------------ATG-AC--------------------GTTGAGAT--ATCGGAAACT-----------ATA----AAAGCTAAAAAGTTGAGC---------------TTTCTACAA-TATA--------------TATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------TATATAT--CAATTTTATTATTTATT-----TAT--------------------TT------------T-T---------------------------------TTCCCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTTGATAGGCCAAAGAACAATTTAAATTGCT-------------------T------------ATTTT-----------------ATTAAATATATTTTTTA-------------------------------AGCTC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................T-----------ATA----AAAGCTAAAAAGTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	1.00	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0

droSec2

GATCTAGCCATGTCCATCTGTCCGTTTGT------------CCGTATGAAC--------------------GTCGAGGT--CTCAGGAACT-----------ATA----AAAGCTAGAAGGTTAAGATTCAGCATAC--AGATTTTAAAGA-CAAA--------------GACGCAGCGCAAGTTTGTTGACCCATGTTTTTGAAATACTTGATGATAT---------------------------------------T----------------------------------------CTTTCACA--------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTAATTATTATTATA-----------------------------------------------------------TAATGTTTTTCTT-------ATTTTCGTAAATTA----------------------------------------------A-------------A	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................TTTGT------------CCGTATGAAC--------------------GTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	1	0
..................TGTCCGTTTGT------------CCGTATGAAC--------------------GTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	9	0.11	1	1	0	0	0
....................TCCGTTTGT------------CCGTATGAAC--------------------GT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	1	0	0	0
......................CGTTTGT------------CCGTATGAAC--------------------GTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	1	0	0	0
...................................................................................CAGGAACT-----------ATA----AAAGCTAGAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0
.....................................................................................................................................................GA-CAAA--------------GACGCAGCGCAAGTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1

droYak3

GATCTGGCCATTTACGTCTGTCCGTCCGT----------------ATTAAC--------------------GC-GAGAT--CTCAACCATT-----------TTT----ATCGATATACCAAAAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTT-----------------------------------------------------------------------------------------------------------------------------------------------GCTTGGTA-AATTATTT-GTATATAAATTGTAATCAAATATATT-TTAAAGATATTTACAG-TGCTGCACTGTTGTGTATGTGTTGACAGGT------------------------------------------------------------------------TTTGA-----------------------------------------------TTTTGTAATT---------------AAATGA----------------------------------------------------------------------------------------T

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

GATCTGGACATTTTCGTCTGCCCGTCCGT----------------ATGAAC--------------------GTCGAGAT--CTCAGGAACT-----------ATA----AAAGCTG--------AGATTAAACATGC--AGATTCCACAGA-CATA--------------GACGCAGCGCAAATTTT-T-----------------------------------------------------------------------------------GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA----------------AT----------------------------------------GT-------------------------------------------------------------------------------------------------------TTTGATATATTTTCATTATTTTTATTAGTCTTTTAAATTTATATCGATT---------------------------------------------------------T-------ATATCGAAA--------------------------------------------------------------AATC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................GTCCGT----------------ATGAAC--------------------GTCGAGAT--CTCAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.30	6	0	0	0	0	0	0	6
.......................GTCCGT----------------ATGAAC--------------------GTCGAGAT--CTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0	0

dmo_428

scaffold_6308:1440125-1440275 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads