ID:

dmo_42

 Coordinate:

scaffold_6308:1300429-1300489 +

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

antisense_to_intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-32.8

Flybase annnotation

Antisense to intron [Dmoj\GI10984-in]

No Repeatable elements found

Sense Strand Reads

TATATATCTATATTATATTTGAATCTATACTTGATTAAGACCCAGGGGACTTTGCACTTTAGTTTTGATACTGTATGATGGAATCCAGTACAAAATTTTAGTGCGAAGCTCATGGCGCTTCATTTTGACAAATACAGAGTTTTATTTGTTCATTATTCATG

***********************************.(((..(((.(((.(((((((((..(((((((.(((((.((......)).))))))))))))..)))))))))))).)))..))).....************************************ 		Read size # Mismatch Hit Count Total Norm Total V110

male body		 M046

female body

 M060

embryo

 V056

head

 V049

head

 V041

embryo
........................................................................................TACAAAATTTTAGTGCGAAGCT................................................... 22 0 1 1080.00 1080 1019 31 17 8 4 1
........................................................................................TACAAAATTTTAGTGCGAAG..................................................... 20 0 1 831.00 831 815 12 0 4 0 0
........................................................................................TACAAAATTTTAGTGCGAAGC.................................................... 21 0 1 216.00 216 205 5 5 1 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTC.................................................. 23 0 1 137.00 137 131 2 0 4 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTT.................................................. 23 1 1 30.00 30 28 0 1 1 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCC................................................... 22 1 1 29.00 29 26 1 2 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTTC................................................. 24 2 1 22.00 22 21 1 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTA.................................................. 23 1 1 12.00 12 11 1 0 0 0 0
..................................................TTTGCACTTTAGTTTTGATACTG........................................................................................ 23 0 1 10.00 10 5 3 0 0 0 2
........................................................................................TACAAAATTTTAGTGCGAAGTT................................................... 22 1 1 9.00 9 9 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCA................................................... 22 1 1 9.00 9 8 1 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAA...................................................... 19 0 1 8.00 8 7 1 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGT.................................................... 21 1 1 7.00 7 7 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGA.................................................... 21 1 1 5.00 5 5 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTCC................................................. 24 1 1 5.00 5 5 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTCT................................................. 24 1 1 5.00 5 4 0 0 0 1 0
........................................................................................TACAAAATTTTAGTGCGAAGCCA.................................................. 23 2 1 5.00 5 5 0 0 0 0 0
..................................................TTTGCACTTTAGTTTTGATACT......................................................................................... 22 0 1 4.00 4 2 2 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGTTC.................................................. 23 1 1 4.00 4 4 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTTA................................................. 24 1 1 3.00 3 3 0 0 0 0 0
.........................................................................................ACAAAATTTTAGTGCGAAGCT................................................... 21 0 1 3.00 3 1 1 1 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCCT.................................................. 23 2 1 3.00 3 3 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTTG................................................. 24 2 1 3.00 3 3 0 0 0 0 0
........................................................................................TACAAAATTTCAGTGCGAAGCT................................................... 22 1 1 2.00 2 1 1 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTCTC................................................ 25 2 1 2.00 2 2 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGTC................................................... 22 2 1 2.00 2 2 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTAA................................................. 24 1 1 2.00 2 1 1 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTTCC................................................ 25 3 1 2.00 2 2 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCAAAG..................................................... 20 1 1 2.00 2 2 0 0 0 0 0
..................................................TTTGCACTTTAGTTTTGATACC......................................................................................... 22 1 1 2.00 2 0 0 2 0 0 0
........................................................................................TACAAAATTTTATTGCGAAGC.................................................... 21 1 1 2.00 2 2 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCTAAG..................................................... 20 1 1 2.00 2 2 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAATCT................................................... 22 1 1 2.00 2 2 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCCC.................................................. 23 1 1 2.00 2 2 0 0 0 0 0
........................................................................................TACAAAATTTTAGCGCGAAGCT................................................... 22 1 1 2.00 2 1 0 1 0 0 0
..................................................TTTGCACTTTAGTTTTGATACTC........................................................................................ 23 1 1 2.00 2 1 1 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAA..................................................... 20 1 2 1.50 3 3 0 0 0 0 0
................GTTGGAATCAATACTTGAT.............................................................................................................................. 19 3 20 1.40 28 6 22 0 0 0 0
..........................................................................................CAAAATTTTAGTGCGAAGCC................................................... 20 1 1 1.00 1 0 0 1 0 0 0
........................................................................................TACAAAATTTTACTGCGAAGC.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGTGAAGCT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTTGT................................................ 25 2 1 1.00 1 1 0 0 0 0 0
........................................................................................TACTAAATTTTAGTGCGAAGCC................................................... 22 2 1 1.00 1 0 0 1 0 0 0
........................................................................................TACAAAATTTTAGTGCAAAGCT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGTTCC................................................. 24 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................AAAATTTTAGTGCGAAGCT................................................... 19 0 1 1.00 1 0 1 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAATC.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
................................................ACTTTGCACTTTAGTTTTGATACTC........................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGGAGCTT.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAT..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAGGCT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTTTC................................................ 25 3 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTATC................................................ 25 3 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGCGTGAAGCT................................................... 22 2 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTCAGTGCGAAGCTC.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
......................................................................................TCTACAAAATTTTAGTGCGAAG..................................................... 22 2 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTTTGAAGCT................................................... 22 2 1 1.00 1 0 0 0 1 0 0
........................................................................................TACAAAATTTTAGAGCGAAGC.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................ACAAAATTTTAGTGCGAAGCTC.................................................. 22 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................ACAAAATTTTAGTGCGGAGCT................................................... 21 1 1 1.00 1 0 1 0 0 0 0
........................................................................................TCCAAAATTTTAGTGCGAAG..................................................... 20 1 1 1.00 1 0 0 0 0 1 0
........................................................................................TACAAAGTTTTAGTGCGAAG..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTTT................................................. 24 2 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAAATTTAGTGCGAAGCT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTTTT................................................ 25 2 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTCTAGTGCGAAGCT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................GACTACAAAATTTTAGTGCGAAGCTC.................................................. 26 2 1 1.00 1 0 1 0 0 0 0
........................................................................................TGCAAAATTTTAGTGCGAAGCTA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TACAATTTTAGTGCGAAGCT................................................... 20 2 2 1.00 2 2 0 0 0 0 0
..................................................TGTGCACTTTAGTTTTGATACTG........................................................................................ 23 1 1 1.00 1 0 0 1 0 0 0
..................................................TTCGCACTTTAGTTTTGATACTG........................................................................................ 23 1 1 1.00 1 0 0 0 1 0 0
..................................................TTTGCACTTTAGTTTTGATACTGTC...................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGACG..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTGCACTTTACTTTTGATACT......................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
...................................................TTCCACTTTAGTTTTGATAC.......................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0
........................................................................................TACAAAATTTTAGTGTGAAGC.................................................... 21 1 1 1.00 1 0 0 1 0 0 0
........................................................................................TACAAAGTTTTAGTGCGAAGCT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTGGTGCGAAGCTT.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGATTA................................................. 24 2 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTAAGTGCGAAGCT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTGCACTTTAGTTTTGATACTGA....................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTTAT................................................ 25 1 1 1.00 1 0 0 0 1 0 0
........................................................................................TACAAAATTTTAGTGCGAACC.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................TTGCACTTTAGTTTTGATACTGT....................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0
..................................................TTTGCACTTTAGTTTTGATACTGT....................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTGGTGCGAAG..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGAGAAGCT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TACACAATTTTAGTGCGAAGCT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................CACAAAATTTTAGTGCGAAGCT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTTAA................................................ 25 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................TTACAAAATTTTAGTGCGAAGCT................................................... 23 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAATCA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTGCGAAGCTCATC............................................... 26 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TAAAAAATTTTAGTGCGAAGCT................................................... 22 1 1 1.00 1 0 0 1 0 0 0
........................................................................................TACAAAATTTTAATGCGAAGC.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTGCACTTTAGTTTTGATAC.......................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
........................................................................................TACAAAATTTTAGTCCGAAG..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................CTACAAAATTTTAGTGCGAAGCT................................................... 23 1 1 1.00 1 0 0 1 0 0 0
........................................................................................TAAAAAATTTTAGTGCTAAGCT................................................... 22 2 2 0.50 1 1 0 0 0 0 0
........................................................................................CACAAAATTTTAGTGCGAAG..................................................... 20 1 3 0.33 1 1 0 0 0 0 0
.........................................................................................TAAAAATTTTAGTGCGAAG..................................................... 19 2 5 0.20 1 1 0 0 0 0 0
.................TTGGAATCAATACTTGAT.............................................................................................................................. 18 2 11 0.18 2 0 2 0 0 0 0
..........................................................................................TACAATTTTAGTGCGAAG..................................................... 18 2 16 0.06 1 1 0 0 0 0 0

Anti-sense strand reads

ATATATAGATATAATATAAACTTAGATATGAACTAATTCTGGGTCCCCTGAAACGTGAAATCAAAACTATGACATACTACCTTAGGTCATGTTTTAAAATCACGCTTCGAGTACCGCGAAGTAAAACTGTTTATGTCTCAAAATAAACAAGTAATAAGTAC

************************************.(((..(((.(((.(((((((((..(((((((.(((((.((......)).))))))))))))..)))))))))))).)))..))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M060

embryo
.........................................................................................................................................TCACAATAAACAAGTAATA..... 19 1 1 1.00 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6308:1300379-1300539 + dmo_42 confident TATATATCTATATTATATTTGAATCTATACTTGATTAAGACCCAGGGGACTTTGCACTTTAGTTTTGATACTGTATGATGGAATCCAGTACAAAATTTTAGTGCGAAGCTCATGGCGCTTCATTTTGACAAATACAGAGTTTTATTTGTTCATTATTCATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TATATATCTATATTATATTTGAATCTATACTTGATTAAGACCCAGGGGACTTTGCACTTTAGTTTTGATACTGTATGATGGAATCCAGTACAAAATTTTAGTGCGAAGCTCATGGCGCTTCATTTTGACAAATACAGAGTTTTATTTGTTCATTATTCATGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
........................................................................................TACAAAATTTTAGTGCGAAGCT...................................................2211080.00108031148171019
........................................................................................TACAAAATTTTAGTGCGAAG.....................................................201831.00831120040815
........................................................................................TACAAAATTTTAGTGCGAAGC....................................................211216.0021650015205
........................................................................................TACAAAATTTTAGTGCGAAGCTC..................................................231137.0013720040131
........................................................................................TACAAAATTTTAGTGCGAAGCTT..................................................23130.00300001128
........................................................................................TACAAAATTTTAGTGCGAAGCC...................................................22129.00291000226
........................................................................................TACAAAATTTTAGTGCGAAGCTTC.................................................24122.00221000021
........................................................................................TACAAAATTTTAGTGCGAAGCTA..................................................23112.00121000011
..................................................TTTGCACTTTAGTTTTGATACTG........................................................................................23110.0010320005
........................................................................................TACAAAATTTTAGTGCGAAGCA...................................................2219.009100008
........................................................................................TACAAAATTTTAGTGCGAA......................................................1918.008100007
........................................................................................TACAAAATTTTAGTGCGAAGT....................................................2117.007000007
........................................................................................TACAAAATTTTAGTGCGAAGA....................................................2115.005000005
........................................................................................TACAAAATTTTAGTGCGAAGCTCC.................................................2415.005000005
........................................................................................TACAAAATTTTAGTGCGAAGCTCT.................................................2415.005001004
........................................................................................TACAAAATTTTAGTGCGAAGCCA..................................................2315.005000005
..................................................TTTGCACTTTAGTTTTGATACT.........................................................................................2214.004200002
.........................................................................................ACAAAATTTTAGTGCGAAGCT...................................................2113.003100011
........................................................................................TACAAAATTTTAGTGCGAAGCCT..................................................2313.003000003
........................................................................................TACAAAATTTTAGTGCGAAGCTTG.................................................2413.003000003
........................................................................................TACAAAATTTTAGTGCGAAGCTCTC................................................2512.002000002
........................................................................................TACAAAATTTTAGTGCGAAGTC...................................................2212.002000002
........................................................................................TACAAAATTTTAGTGCGAAGCTTCC................................................2512.002000002
..................................................TTTGCACTTTAGTTTTGATACC.........................................................................................2212.002000020
..................................................TTTGCACTTTAGTTTTGATACTC........................................................................................2312.002100001
........................................................................................TACAAAATTTTAGTGCGAAA.....................................................2021.503000003
..........................................................................................CAAAATTTTAGTGCGAAGCC...................................................2011.001000010
...........................................................................................AAAATTTTAGTGCGAAGCT...................................................1911.001100000
................................................ACTTTGCACTTTAGTTTTGATACTC........................................................................................2511.001000001
........................................................................................TACAAAATTTTAGTGCGAAT.....................................................2011.001000001
........................................................................................TACAAAATTTTAGTGCGAAGCTTTC................................................2511.001000001
........................................................................................TACAAAATTTTAGTGCGAAGCTATC................................................2511.001000001
.........................................................................................ACAAAATTTTAGTGCGAAGCTC..................................................2211.001100000
........................................................................................TACAAAATTTTAGTGCGAAGCTTT.................................................2411.001000001
..................................................TTTGCACTTTAGTTTTGATACTGTC......................................................................................2511.001000001
..................................................TTTGCACTTTAGTTTTGATACTGA.......................................................................................2411.001000001
...................................................TTGCACTTTAGTTTTGATACTGT.......................................................................................2311.001000100
..................................................TTTGCACTTTAGTTTTGATACTGT.......................................................................................2411.001000001
........................................................................................TACAAAATTTTAGTGCGAAGCTCATC...............................................2611.001000001
..................................................TTTGCACTTTAGTTTTGATAC..........................................................................................2111.001000001

Generated: 10/20/2015 at 06:46 PM