dmo_418

intron [Dmoj\GI11010-in]; exon [dmoj_GLEANR_10932:3]; CDS [Dmoj\GI11010-cds]; exon [dmoj_GLEANR_10932:2]; CDS [Dmoj\GI11010-cds]; intron [Dmoj\GI11010-in]

Name	Class	Family	Strand
TART_DV	LINE	Jockey	-

##################################################------------------------------------------------------------------------------------------##########################################-------- GAAACAGAATTTCGCAGTCCTCATCGCTATGGCGGGACCAATGGCAATTCGTCCTCCAACAACAACAACAACAGTAACAATGGCAGCAGCAGCAACAACAACAACAGCAGCAACAACAACAACAATAACTTCATGAACAGCAACAACAACAGCATTGGCAGCAATAGCGAGCTAAAGGAACAGTACGTGA ************************************************................................((.((...................)).)).............................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head	M060 embryo	M046 female body
.............................................................................................................................TAACTTCACGATCAGCAACCAC...........................................	22	3	1	1.00	1	1	0	0
............................ATGGACGGACCAATGGCACT..............................................................................................................................................	20	3	13	0.08	1	0	1	0
....................................................................................AGCAGCAGCAACAACAACAACAGCA.................................................................................	25	0	20	0.05	1	0	0	1

CTTTGTCTTAAAGCGTCAGGAGTAGCGATACCGCCCTGGTTACCGTTAAGCAGGAGGTTGTTGTTGTTGTTGTCATTGTTACCGTCGTCGTCGTTGTTGTTGTTGTCGTCGTTGTTGTTGTTGTTATTGAAGTACTTGTCGTTGTTGTTGTCGTAACCGTCGTTATCGCTCGATTTCCTTGTCATGCACT ************************************************................................((.((...................)).)).............................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head	M046 female body
................................................................................................................................GAAGTACTTGTAGTTGTTTTT.........................................	21	2	3	0.33	1	1	0
...............................................................................................................................TGAAGTACTTGGCGGTGTTA...........................................	20	3	7	0.14	1	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6308:823794-823983 -	dmo_418	GAAACAGAATTTC-GCAGTCC-------------------T---------CATCGCTA---------------------------------------------------TGGCGGGACCAATGGCAATTCGTCCTCCA---------------------------ACA--------------------------ACAACAACAACAGTAAC------------------AATGGCAGC---A---------GCAGCAACAACA---ACAACA------GCAGCAAC---AACAA------------C------------AACAATA---ACTTCAT------------------------GAACAGCAACAACAACAG---------CATTGGCAGCAATAG-----------CG----------AGCTAAAGGAACAGT-----------------A-----------CGTGA
droVir3	scaffold_13042:3598622-3598815 -		GAAACGGAGTTCC-GCAGTCC-------------------C---------CATCGCTA---------------------------------------------------TGGCGGAACCAACGGCAACTCTTCC---A---------------------------ACAACA-----------------------GCAACAACAACAACAAC------------------AACATCATC---A---------TCAGTAGCCACA---ACAACAACA---ATAAC---------AA---------------CAACAAC---AACATCATCATCAACAG------------------------CAACAACAACCACAACAA---------CATTGGCAGCAACAG-----------CG----------AGCTTAAGGAACAGT-----------------A-----------AGT--
droGri2	scaffold_14853:10125574-10125726 -		GAAACCGAGTTTC-GCAGCCC-------------------G---------ACTCGCTA---------------------------------------------------TGGCGGCACTAACGGCACTTCGT-----------------------------------------------------------------------------------------------------CCAAC---A---------ACAGCAACAAC---AACAACAATA---ACAGCAGCAACAA------------------TAACAAC------ATCA------ATAT------------------------TGGCAGCAACAGTGGCATCAA------------------CAG-----------CG----------AGCTGAAAGAACAGT-----------------A-----------AGTG-
droWil2	scf2_1100000004909:3993108-3993301 +		AAACAGAAATTTT-GTAGCAT-------------------T---TTT---CGTTTTCGTC-G------------------C------A-----------------------ACAA--TCATCGTTATC--GTGCCGCA------------------GCAGCTGCAGCGGCAGCAACAGCGGCAGC-----------------------------------------------AGCAGC---A---------GCAACAACAGC---AGCAGCA------TCGGC---------GG---------------CAGCAGC---AGCAGCAGCT---TCAG------------------------CCGGATCAACAACAACAACAA------CATCATCATCTGC-------------------------AGCCACCACAG--GCA------------CA--A-----------T----
dp5	XR_group8:1009041-1009221 -		AAAATGGAATTTC-CCAC-GA---------ATTGAGGCAG----------------CAA------------------------------CAGCAAAAGGACCTCCTGGA-----C---------------ATGT---TG------------------------CAGCAGCA-----------------------TCAACAGCAACAGCAGC------------------AGCAGCAGC---A---------ACAACAACAGCAGCAACAACA------GCAGC---------AG---------------CAGCAAC---AACAACAGCA---ACAA------------------------CAGCAGCAGCAACAACAACAA------CAG-------------------------------------CAGCAGCAGCAGCA---------------------------------
droPer2	scaffold_13:85271-85461 +		TAAACGCAATTCC-AATTCAT-------------------A---ATT---CGCCGCCGCC-------------------GC------C-----------------------GCAGCAGCCACAGTC----GCA---------------------CAACAACAACAACAGCA-----------------------GC------AACAGCAAC------------------AGTTGCAAC---A---------GCTGCAACTGC---AACAGCAACAGCAGCAGA------------------------------ATC---AACAACAACA---ACAG------------------------CAACAACAACAACAACAACAA------CAACAGCAGCAGCAA-----------C-----------A--TTCAGTAGCAGC-----------------A-----------C----
droAna3	scaffold_12929:1995950-1996124 +		TC---------TC-GCGGTCTACAAGGGA-A---------T---------TGCTGCGA---------------------------------------------------CAGCAACGCCGGC---------------AG------------------------CAACAGCA-----------------------GCAGCAGCAACAGCAAC------------------AGCAGCAGC---A---------ACAACA---------------------GCAGCAGC---AACAACAGCAACAGCAAC---------------AGCA------ATGC------------------------CGACAGCAACAGCAACAGCAG------------------CAACATGAGCAG-------CAAACACAGCAACAGCAACAGCA---------------------------------
droBip1	scf7180000396360:488698-488883 -		GGAACATATGTTG-GCG-----------------------------------TGGTCCTG-G------------------CAACATCGTCAGCA--------------------------------A-GTAGAA---A--------------TGCGACGGCTGCAGCAGCA-----------------------GCAGCAACAGCAGTATC------------------AGCAGCTGC---A---------GCAGCATCAACA---ACTGCA------GCAGCATC---AACAA------------C---AGCAAC---AGCATCA---ACAACAG------------------------CAGCAGCATCAACAACAGCAG------CAT---------C-------------------------AACAACAGCAACAGCA---------------------------------
droKik1	scf7180000302698:119967-120160 +		CAGAATTAAGC-------------CAACAT----------C---------AACAGCAA---------------------------------------------------CAGCAACACCAGCAGCAAC------------------------------------------A---TCAACA--------------AC---AACATCAACAACAACTTCAACAGCAACTTCAACAACAGCAGCAAATTCAACAA------CAGC---A------------------------------------------------GA---AAAATCA---ACAACAGCAGCAACATCAACAAGAGCAACTTCAACAACAGCAACTTCAACAA------CAG---------C-------------------------AGCAACATCAACAGCA----------------------------C----
droFic1	scf7180000453829:1092901-1093107 +		ACAGCAGT-T-CAAGGAACCA-------------------T---------CATCGATATC---------------------------------------------------GCGGGAGCAACAGCAGTTCAACAACAA-GCCCTTCAACTTG--------GCGCAGTTGAT--------------CAAGCAGCAGCAGCAGCAACGGCAGC------------------AACTGCAGC---A---------GCAGCAACTGC---AGCAGCAACAACAGCAGC---------------------------AGCAAC---AACAGCA---GCAACAA------------------------CAGCAGCAGCAACAGCAACAG------CAG---------C-------------------------AACTACAACAACAACA---------------------------------
droEle1	scf7180000491265:165931-166117 -		GAAACCGACT-CC-GAAGTCC-------------------G-----------GCTCCCTG-G------------CGGCGAC------G-----------------------------GCATCGTCCACTTGACC---A--------------GACGACAGACCCAACAACA-----------------------AC------------AAC------------------GCTGACAGGGACAAACGCAACAA------CAGC---AACGGCA------ACAAC---------------------------AGCAAC---AGCAACG---------G------------------------CAACAACAGCAACAACAACAGCAACAACCA---------CAG-----------C-----------TGCAACATGGATGAC-----------------A-----------CGTCA
droRho1	scf7180000776808:11967-12138 -		TCAGAA------------TCGCGATGATG--------------------ATGATGGTGATGCGAATATTGGCAGC------------------ACG------------------A---------------GTGC---AA------------------------CAGCA--------------------------ACAGCAACAGCAAAAGC------------------A---ACGGC---A---------ACTGTAACAGC---AACAGCAAGA---AC------------AA------------C---AGCAACCCCAACTATA---ACAGCAA------------------------TAACAACAGCAACAGCAACAC------CAA---------C-------------------------AGCAACAGCAACAGTA---------------------------------
droBia1	scf7180000302187:328894-329085 +		GCAGCAGCA-----GCAGCCG-------------------C---------CGCCGCCCTC---------------------------------------------------GCAGCAGCAGCAGCAGCTGCATC---------------------------------AGCT--------------CAAGTCGCCGCAGCAACACCAGCAGC------------------AGTTGCAGC---A---------GCAACAGCAGC---AACAGCA------GC------------AC------------CAGCAACACC---ACCAGCA---GCATCAG------------------------CAGCAACAGCAGCAACACCAC------CAG---------C-------------------------AGCAGCAGCTGCAGCA----------------AAACGAATCGGATGT--
droTak1	scf7180000414432:76284-76452 -		CAGTCCA---------------------------------TCATCGTCGTGGGGACCTTTGTCTTTGTCTCTCGC------------------ATC-----------------------------------------A---------------------------GAAACAGAAACAACAACAGC--------AGCAGC---AACAGCAAC------------------AACAGCAAC---A---------GCAGCAACAGC---AACAGC---------------------------------------AACAAC---AGCAACA---GCAGCAG------------------------CAACAATAGCAACAGTAACAG------CAA---------C-------------------------AACAACAGCAACAGCA---------------------------------
droEug1	scf7180000409802:397804-397971 -		GCAACAGCAG-CA-GCAACCT-------------------C---------CAATGCCC---------------------------------------------------AAACACTACCAGGAGCAATTGTACGCCCA---------------------------GCAGCA-----------------------AC---AGCTGCAACAAC---------------------AGCT------------------------------------------GCAGCAGC------------------------AACAAC---AGCAACAGCA---GCAG------------------------CAGCAACAGCAATTGCACCAA------CAG---------C-------------------------AGCAGCAGCAGCAACATCGCCACAAAAATGACC-----------T----
dm3	chrX:11789291-11789458 +		GAATCAGAATGTT-G----------------------------------TCAACGCACACGTGTCTGATTGCAAG------------------TCT-----------------------------------------A---------------------------GCGATAGCAACAACAACAGC-----------------------------------------------ACCAGC---A---------GCAGCAACAAC---AACAGCA------CCATCAGC---AGCAA------------CAACAACAAC---ACTAGCA---GCGCCAG------------------------CAACAACAACACTGGCAGCAG------CAG---------C-------------------------AGTTGCAGCAACAGA-----------------A-----------C----
droSim2	x:11167888-11168052 +		GAATCAGAATGTT-G----------------------------------TCAACGCACTCGTGTCTGATTGCAAC------------------TCT-----------------------------------------A---------------------------GCGACAGCAACAACAACAAC-----------------------------------------------AGCAGC---A---------CCTGCAAC---------AACAACACTAGCAGCACC------AG------------------CAAC---AATAACA------CTGG------------------------CAGCAGCAGCAACAACAA---------TACTGGCAGCAGCAG-----------C-----------AGTTGCATCAACAGA-----------------A-----------C----
droSec2	scaffold_53:8293-8465 +		GAATCAGAATGTT-G----------------------------------TCAACGCACTCGTGTCTGATTGCAAC------------------TCT-----------------------------------------A---------------------------GCGACAGCAACAACAACAAC-----------------------------------------------AGCAGC---A---------CCTGCAAC---------AACAACACTAGCAGCACC------AG---------------------C---AACAATA------ACAC------------------------TGGCAGCAGCAGCAGTTGCAT------CAA---------CAG----AACAAAGCCAGCCAAATGGCTCAATGAGAACAGTA---------------------------------
droYak3	3R:18798158-18798328 +		TCGAAA------------TCAT--CAGCGT----------C---------AAAAGCAG---------------------------------------------------CAGCAGCAACAGCAGCAAC---------------------------------------AGCA-----------------------GCAGCAACAGCAGCAAC------------------AACAGCAGC---A---------GCAGCAGCAACA---GCAGCA------ACATCAGC---AACAA------------CAGCAACAAC---AGCAGCA---GCAACAG------------------------CAACAACAGCAAAAGCAGCAA------CAG---------C-------------------------AGCAACAACAGCAGCA---------------------------------
droEre2	scaffold_4929:8256650-8256830 +		CCAACCGAATGCT-GCAGCGC---------AGCCTTGCAG----------------CCAT-C------------CAGCGGC------G-----------ACGCGTTGCA-----T---------------GTGC---AG------------------------CAGCAGCA-----------------------GCACCAGCAACAGCAAC------------------ATCAGCAGC---A---------ACATCA---------TCAGCA------GCAGC---------AG---------------CAGCAAC---AGCAGCAGCA---ACAG------------------------CAGCAACAACAGCAGCAACAA------CAG---------C-------------------------AGCAGCAGCAGCAGG-----------------A-----------CACGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GAAACAGAATTTC-GCAGTCC-------------------T---------CATCGCTA---------------------------------------------------TGGCGGGACCAATGGCAATTCGTCCTCCA---------------------------ACA--------------------------ACAACAACAACAGTAAC------------------AATGGCAGC---A---------GCAGCAACAACA---ACAACA------GCAGCAAC---AACAA------------C------------AACAATA---ACTTCAT------------------------GAACAGCAACAACAACAG---------CATTGGCAGCAATAG-----------CG----------AGCTAAAGGAACAGT-----------------A-----------CGTGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................................................................AGC---A---------GCAGCAACAACA---ACAACA------GCA.................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0

droVir3

GAAACGGAGTTCC-GCAGTCC-------------------C---------CATCGCTA---------------------------------------------------TGGCGGAACCAACGGCAACTCTTCC---A---------------------------ACAACA-----------------------GCAACAACAACAACAAC------------------AACATCATC---A---------TCAGTAGCCACA---ACAACAACA---ATAAC---------AA---------------CAACAAC---AACATCATCATCAACAG------------------------CAACAACAACCACAACAA---------CATTGGCAGCAACAG-----------CG----------AGCTTAAGGAACAGT-----------------A-----------AGT--	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................................................A---------TCAGTAGCCACA---ACAACAACA---ATAAC---------A.....................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TA---------------------------------------------------TGGCGGAACCAACGGCAA...........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................AAC---------AA---------------CAACAAC---AACATCATCATCAACAG------------------------..................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CATCATC---A---------TCAGTAGCCACA---................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
GAAACGGAGTTCC-GCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................AC---AACATCATCATCAACAG------------------------CA................................................................................................................	21	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................ACAACAACAACAAC------------------AACATCATC---A---------...............................................................................................................................................................................................................................	24	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CAACAG------------------------CAACAACAACCACAAC..................................................................................................	22	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CAACAACAACAACAAC------------------AACATC...............................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................AACAACAACCACAACAA---------CA.....................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GAAACCGAGTTTC-GCAGCCC-------------------G---------ACTCGCTA---------------------------------------------------TGGCGGCACTAACGGCACTTCGT-----------------------------------------------------------------------------------------------------CCAAC---A---------ACAGCAACAAC---AACAACAATA---ACAGCAGCAACAA------------------TAACAAC------ATCA------ATAT------------------------TGGCAGCAACAGTGGCATCAA------------------CAG-----------CG----------AGCTGAAAGAACAGT-----------------A-----------AGTG-	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................................................................................................................ACTTCGT-----------------------------------------------------------------------------------------------------CCAAC---A---------ACAGCAA........................................................................................................................................................................................................................	20	1	1.00	1	1	0
.............................................................................................................................................................................................................................................................................ACAATA---ACAGCAGCAACAA------------------TAACA................................................................................................................................................................	24	2	0.50	1	1	0

droWil2

AAACAGAAATTTT-GTAGCAT-------------------T---TTT---CGTTTTCGTC-G------------------C------A-----------------------ACAA--TCATCGTTATC--GTGCCGCA------------------GCAGCTGCAGCGGCAGCAACAGCGGCAGC-----------------------------------------------AGCAGC---A---------GCAACAACAGC---AGCAGCA------TCGGC---------GG---------------CAGCAGC---AGCAGCAGCT---TCAG------------------------CCGGATCAACAACAACAACAA------CATCATCATCTGC-------------------------AGCCACCACAG--GCA------------CA--A-----------T----	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................TT---CGTTTTCGTC-G------------------C------A-----------------------ACA........................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0
.................................................................................................................................................................................................................................................................ACAGC---AGCAGCA------TCGGC---------GG---------------CAGC.................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1
....................................................................................................................................................................................................................................................................GC---AGCAGCA------TCGGC---------GG---------------CAGC.................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................GCAGCGGCAGCAACAGCGGCAGC-----------------------------------------------A.................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
...............................................................................................................ACAA--TCATCGTTATC--GTGCC...................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................GCAACAACAGC---AGCAGCA------TCGGC---------T.....................................................................................................................................................................................	24	2	0.50	1	1	0	0	0	0
..........................................................................................................................................................................AGCAACAGCGGCAGC-----------------------------------------------AGCAGC---A---------...............................................................................................................................................................................................................................	22	7	0.29	2	0	0	1	0	1
........................................................................................................................................................................GCAGCAACAGCGGCAGC-----------------------------------------------AGCAGC---A---------...............................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................GCAACAACAGC---AGCAGCA------TC..................................................................................................................................................................................................	20	6	0.17	1	0	0	1	0	0
...........................................................................................................................................................................GCAACAGCGGCAGC-----------------------------------------------AGCAGC---.........................................................................................................................................................................................................................................	20	10	0.10	1	0	0	0	1	0
.............................................................................................................................................................................................................................................C---A---------GCAACAACAGC---AGCAGCA------....................................................................................................................................................................................................	20	20	0.10	2	0	0	0	1	1
..........................................................................................................................................................................AGCAACAGCGGCAGC-----------------------------------------------AGC...............................................................................................................................................................................................................................................	18	13	0.08	1	0	0	0	1	0
.............................................................................................................................................................................AACAGCGGCAGC-----------------------------------------------AGCAGC---A---------...............................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................................................AGCAGC---A---------GCAACAACAGC---AGCA.............................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................GC---A---------GCAACAACAGC---AGCA.............................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................................................A---------GCAACAACAGC---AGCAGCA------....................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................GC---A---------GCAACAACAGC---AGCAGCA------....................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0

dp5

AAAATGGAATTTC-CCAC-GA---------ATTGAGGCAG----------------CAA------------------------------CAGCAAAAGGACCTCCTGGA-----C---------------ATGT---TG------------------------CAGCAGCA-----------------------TCAACAGCAACAGCAGC------------------AGCAGCAGC---A---------ACAACAACAGCAGCAACAACA------GCAGC---------AG---------------CAGCAAC---AACAACAGCA---ACAA------------------------CAGCAGCAGCAACAACAACAA------CAG-------------------------------------CAGCAGCAGCAGCA---------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................GGACCTCCTGGA-----C---------------ATGT---TG------------------------C......................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................GACCTCCTGGA-----C---------------ATGT---TG------------------------CAGCAGC................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...ATGGAATTTC-CCAC-GA---------ATTGAGGCAG----------------..................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................AA------------------------------CAGCAAAAGGACCTCCTGGA-----........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....GGAATTTC-CCAC-GA---------ATTGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................GACCTCCTGGA-----C---------------ATGT---TG------------------------CAGCAGCA-----------------------TC......................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................GCAAAAGGACCTCCTGGA-----C---------------ATGT---TG------------------------CA.....................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...................GA---------ATTGAGGCAG----------------CAA------------------------------CAGCAAAAGGAC.....................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........ATTTC-CCAC-GA---------ATTGAGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................CAAAAGGACCTCCTGGA-----C---------------ATGT---T................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................GGACCTCCTGGA-----C---------------ATGT---TG------------------------CAGCA..................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................TGAGGCAG----------------CAA------------------------------CAGCAAAAGGACC....................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........TTTC-CCAC-GA---------ATTGAGGCAG----------------C.................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........ATTTC-CCAC-GA---------ATTGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................AGGACCTCCTGGA-----C---------------ATGT---TG------------------------C......................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................GA-----C---------------ATGT---TG------------------------CAGCAGCA-----------------------TCA.....................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................AGCAACAACA------GCAGC---------AG---------------CAGC.................................................................................................................................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CA-----------------------TCAACAGCAACAGCAGC------------------AG...................................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................A------------------------CAGCAGCAGCAACAACAACAA------CAG-------------------------------------C..............................................	26	9	0.11	1	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAACAACAA------C......................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAA------CAG-------------------------------------CAGCAGCAGCAG...................................	26	20	0.10	2	0	0	0	0	0	0	0	2	0	0
..................................................................................................................................................................................................................C------------------AGCAGCAGC---A---------ACAACAACAGCAGCAAC..............................................................................................................................................................................................................	28	11	0.09	1	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................GCAGCAGC---A---------ACAACAACAGCAGCAAC..............................................................................................................................................................................................................	26	12	0.08	1	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................GCAAC---AACAACAGCA---ACAA------------------------CAGCAGC...........................................................................................................	26	13	0.08	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................C---AACAACAGCA---ACAA------------------------CAGCAGCAG.........................................................................................................	24	14	0.07	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................C---AACAACAGCA---ACAA------------------------CAGCAGCAGC........................................................................................................	25	14	0.07	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................GC---A---------ACAACAACAGCAGCAACAAC...........................................................................................................................................................................................................	23	16	0.06	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................AAC---AACAACAGCA---ACAA------------------------CAGCAGCA..........................................................................................................	25	16	0.06	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAA------CAG-------------------------------------CAGCAGCAGCA....................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAACAACAA------CAG-------------------------------------C..............................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................CAGC---A---------ACAACAACAGCAGCAACAAA...........................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAA------CAG-------------------------------------CAGCAG.........................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAA------CAG-------------------------------------CAGC...........................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................AACAGCAACAGCAGC------------------AGCA.................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................CAGC------------------AGCAGCAGC---A---------ACAACAACA......................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................CAGCA---ACAA------------------------CAGCAGCAGCAACA....................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CAACAACAGCAGCAACAACA------....................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAACAACAA------CAG-------------------------------------...............................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAA------CAG-------------------------------------CAGCAGC........................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................AACAACAGCAGCAACAACA------GC..................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................CAGCAACAACA------GCAGC---------AG---------------CAGCA................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................AG---------------CAGCAAC---AACAACAGCA---AC............................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ACAACAACAGCAGCAACAACA------....................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAA------CAG-------------------------------------CAGCAGCAGT.....................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................CAGCA---ACAA------------------------CAGCAGCAGC........................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................GCAGC---A---------ACAACAACAGCAGC.................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAA------CAG-------------------------------------CAGCAGCAGCAGC..................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CAACAACAGCAGCAACAACA------GCA.................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................CAACAGCA---ACAA------------------------CAGCAGC...........................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................CAGCAGC------------------AGCAGCAGC---A---------ACAACAACAG.....................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................GCA---ACAA------------------------CAGCAGCAGCAACAA...................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0

droPer2

TAAACGCAATTCC-AATTCAT-------------------A---ATT---CGCCGCCGCC-------------------GC------C-----------------------GCAGCAGCCACAGTC----GCA---------------------CAACAACAACAACAGCA-----------------------GC------AACAGCAAC------------------AGTTGCAAC---A---------GCTGCAACTGC---AACAGCAACAGCAGCAGA------------------------------ATC---AACAACAACA---ACAG------------------------CAACAACAACAACAACAACAA------CAACAGCAGCAGCAA-----------C-----------A--TTCAGTAGCAGC-----------------A-----------C----	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................................................................................................................................AACAGCAGCAGA------------------------------ATC---AACAAC.....................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...................................................GCCGCCGCC-------------------GC------C-----------------------GCAGCAGCC..................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................AACAACA---ACAG------------------------CAACAAC...........................................................................................................	18	20	0.05	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................CAACAACAA------CAACAGCAGC.............................................................................	19	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAACAACAA------CAACAGC................................................................................	26	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................ACAACAACAACAGCA-----------------------GC------AAC.............................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAACAACAA------CAACAGCAG..............................................................................	28	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................ACAA------CAACAGCAGCAGCAA-----------C-----------A--..............................................	21	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAA------CAACAGCAGCA............................................................................	22	20	0.05	1	0	0	1	0	0	0

droAna3

TC---------TC-GCGGTCTACAAGGGA-A---------T---------TGCTGCGA---------------------------------------------------CAGCAACGCCGGC---------------AG------------------------CAACAGCA-----------------------GCAGCAGCAACAGCAAC------------------AGCAGCAGC---A---------ACAACA---------------------GCAGCAGC---AACAACAGCAACAGCAAC---------------AGCA------ATGC------------------------CGACAGCAACAGCAACAGCAG------------------CAACATGAGCAG-------CAAACACAGCAACAGCAACAGCA---------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................................................AGC---A---------ACAACA---------------------GCAGCAGC---.........................................................................................................................................................................................	18	20	0.25	5	0	5	0	0	0	0
.....................................................................................................................................................................................................GCAGCAACAGCAAC------------------AGCAGCAGC---.........................................................................................................................................................................................................................................	23	20	0.15	3	1	2	0	0	0	0
......................................................................................................................CGGC---------------AG------------------------CAACAGCA-----------------------GCAGCAG.................................................................................................................................................................................................................................................................................	21	8	0.13	1	1	0	0	0	0	0
.......................................................................................................................................................................AGCA-----------------------GCAGCAGCAACAGCAAC------------------A....................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0
....................................................................................................................................................................................................AGCAGCAACAGCAAC------------------AGCA.................................................................................................................................................................................................................................................	19	20	0.10	2	1	0	1	0	0	0
.......................................................................................................................................................................................................AGCAACAGCAAC------------------AGCAGCAGC---.........................................................................................................................................................................................................................................	21	20	0.10	2	0	1	0	0	0	1
...................................................................................................................................................................CAACAGCA-----------------------GCAGCAGCAACAGC..........................................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0
..........................................................................................................................................G------------------------CAACAGCA-----------------------GCAGCAGCAACAGCA.........................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0
.........................................................................................................................................AG------------------------CAACAGCA-----------------------GCAGCAGCAAC.............................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
....................................................................................................................................................................AACAGCA-----------------------GCAGCAGCAACAGC..........................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
..........................................................................................................................................G------------------------CAACAGCA-----------------------GCAGCAGCAACAGCAAC------------------.....................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	2
...........................................................................................................................................................................................................................................................ACAACA---------------------GCAGCAGC---AACA.....................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................AGCAGC---AACAACAGCAACAGCA.........................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................GCAGC---A---------ACAACA---------------------GCAGCAGC---A........................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................AGCAGC---A---------ACAACA---------------------GCAGC...............................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................AGCAGCAGC---A---------ACAACA---------------------GCAGCAGC---A........................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1
.......................................................................................................................................................................AGCA-----------------------GCAGCAGCAACAGCAAC------------------AGC..................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................AGCAGCAGC---A---------ACAACA---------------------GCAGC...............................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................CA-----------------------GCAGCAGCAACAGCAAC------------------AGC..................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................GCAGCAACAGCAAC------------------AGCAGCAGC---A---------AC.............................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................ACAGCA-----------------------GCAGCAGCAACAGCAA........................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................GCAGCAGC---AACAACAGCAAC.............................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................AGCA-----------------------GCAGCAGCAACAGCAAC------------------AGCAGC...............................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................................................AACAGCA-----------------------GCAGCAGCAACAGCA.........................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................CAAC------------------AGCAGCAGC---A---------ACAACA---------------------GCAGCA..............................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................A---------ACAACA---------------------GCAGCAGC---AACA.....................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................AGCA-----------------------GCAGCAGCAACAGCA.........................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
.........................................................................................................................................AG------------------------CAACAGCA-----------------------GCAGCAGCAACAGC..........................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................AG------------------------CAACAGCA-----------------------GCAGCAGCA...............................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................ACA---------------------GCAGCAGC---AACAACAGCA...............................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................AGCAGC---AACAACAGCAACAGC..........................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAAC---------------AGC.....................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................AACAGCAAC------------------AGCAGCAGC---A---------A..............................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................CAACA---------------------GCAGCAGC---AACAACAGCA...............................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................ACAGCA-----------------------GCAGCAGCAACAGCAAC------------------A....................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................AGCAGCAGC---A---------ACAACA---------------------GCAGCAGC---.........................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................AGC---A---------ACAACA---------------------GCAGCAGC---AAC......................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................................................................................AGCAGCAACAGCAAC------------------AGCAGC...............................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................A---------------------GCAGCAGC---AACAACAGCAACAGC..........................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................AG------------------------CAACAGCA-----------------------GCAGCAGCAACAGCA.........................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAACAGCA---------------------------------	18	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................CAGCA-----------------------GCAGCAGCAACAGCAAC------------------.....................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................GCAGC---AACAACAGCAACAGC..........................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................AAC------------------AGCAGCAGC---A---------ACAACA---------------------....................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................C---------------AG------------------------CAACAGCA-----------------------GCAGCAGCAAC.............................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0

droBip1

GGAACATATGTTG-GCG-----------------------------------TGGTCCTG-G------------------CAACATCGTCAGCA--------------------------------A-GTAGAA---A--------------TGCGACGGCTGCAGCAGCA-----------------------GCAGCAACAGCAGTATC------------------AGCAGCTGC---A---------GCAGCATCAACA---ACTGCA------GCAGCATC---AACAA------------C---AGCAAC---AGCATCA---ACAACAG------------------------CAGCAGCATCAACAACAGCAG------CAT---------C-------------------------AACAACAGCAACAGCA---------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAGAATTAAGC-------------CAACAT----------C---------AACAGCAA---------------------------------------------------CAGCAACACCAGCAGCAAC------------------------------------------A---TCAACA--------------AC---AACATCAACAACAACTTCAACAGCAACTTCAACAACAGCAGCAAATTCAACAA------CAGC---A------------------------------------------------GA---AAAATCA---ACAACAGCAGCAACATCAACAAGAGCAACTTCAACAACAGCAACTTCAACAA------CAG---------C-------------------------AGCAACATCAACAGCA----------------------------C----	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACAGCAGT-T-CAAGGAACCA-------------------T---------CATCGATATC---------------------------------------------------GCGGGAGCAACAGCAGTTCAACAACAA-GCCCTTCAACTTG--------GCGCAGTTGAT--------------CAAGCAGCAGCAGCAGCAACGGCAGC------------------AACTGCAGC---A---------GCAGCAACTGC---AGCAGCAACAACAGCAGC---------------------------AGCAAC---AACAGCA---GCAACAA------------------------CAGCAGCAGCAACAGCAACAG------CAG---------C-------------------------AACTACAACAACAACA---------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GAAACCGACT-CC-GAAGTCC-------------------G-----------GCTCCCTG-G------------CGGCGAC------G-----------------------------GCATCGTCCACTTGACC---A--------------GACGACAGACCCAACAACA-----------------------AC------------AAC------------------GCTGACAGGGACAAACGCAACAA------CAGC---AACGGCA------ACAAC---------------------------AGCAAC---AGCAACG---------G------------------------CAACAACAGCAACAACAACAGCAACAACCA---------CAG-----------C-----------TGCAACATGGATGAC-----------------A-----------CGTCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCAGAA------------TCGCGATGATG--------------------ATGATGGTGATGCGAATATTGGCAGC------------------ACG------------------A---------------GTGC---AA------------------------CAGCA--------------------------ACAGCAACAGCAAAAGC------------------A---ACGGC---A---------ACTGTAACAGC---AACAGCAAGA---AC------------AA------------C---AGCAACCCCAACTATA---ACAGCAA------------------------TAACAACAGCAACAGCAACAC------CAA---------C-------------------------AGCAACAGCAACAGTA---------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCAGCAGCA-----GCAGCCG-------------------C---------CGCCGCCCTC---------------------------------------------------GCAGCAGCAGCAGCAGCTGCATC---------------------------------AGCT--------------CAAGTCGCCGCAGCAACACCAGCAGC------------------AGTTGCAGC---A---------GCAACAGCAGC---AACAGCA------GC------------AC------------CAGCAACACC---ACCAGCA---GCATCAG------------------------CAGCAACAGCAGCAACACCAC------CAG---------C-------------------------AGCAGCAGCTGCAGCA----------------AAACGAATCGGATGT--	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAGTCCA---------------------------------TCATCGTCGTGGGGACCTTTGTCTTTGTCTCTCGC------------------ATC-----------------------------------------A---------------------------GAAACAGAAACAACAACAGC--------AGCAGC---AACAGCAAC------------------AACAGCAAC---A---------GCAGCAACAGC---AACAGC---------------------------------------AACAAC---AGCAACA---GCAGCAG------------------------CAACAATAGCAACAGTAACAG------CAA---------C-------------------------AACAACAGCAACAGCA---------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GCAACAGCAG-CA-GCAACCT-------------------C---------CAATGCCC---------------------------------------------------AAACACTACCAGGAGCAATTGTACGCCCA---------------------------GCAGCA-----------------------AC---AGCTGCAACAAC---------------------AGCT------------------------------------------GCAGCAGC------------------------AACAAC---AGCAACAGCA---GCAG------------------------CAGCAACAGCAATTGCACCAA------CAG---------C-------------------------AGCAGCAGCAGCAACATCGCCACAAAAATGACC-----------T----	Size	Hit Count	Total Norm	Total
No Reads

dm3

GAATCAGAATGTT-G----------------------------------TCAACGCACACGTGTCTGATTGCAAG------------------TCT-----------------------------------------A---------------------------GCGATAGCAACAACAACAGC-----------------------------------------------ACCAGC---A---------GCAGCAACAAC---AACAGCA------CCATCAGC---AGCAA------------CAACAACAAC---ACTAGCA---GCGCCAG------------------------CAACAACAACACTGGCAGCAG------CAG---------C-------------------------AGTTGCAGCAACAGA-----------------A-----------C----	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................AACAACAACACTGGCAGCAG------CAG---------C-------------------------AGT..............................................	27	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CAACAACACTGGCAGCAG------CAG---------C-------------------------AGT..............................................	25	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................AACAACACTGGCAGCAG------CAG---------C-------------------------AGT..............................................	24	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................AGCAA------------CAACAACAAC---ACTAGCA---GCGC.............................................................................................................................................	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................CAACAACAAC---ACTAGCA---GCGCCAG------------------------C.................................................................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TAGCA---GCGCCAG------------------------CAACAACAACACT.....................................................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................................................................................................GC-----------------------------------------------ACCAGC---A---------GCAGCAACAAC---AACAG............................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CAGCAACAAC---AACAGCA------CCATCAGC---AT.......................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................CAAC---AACAGCA------CCATCAGC---AA.......................................................................................................................................................................................	21	8	0.38	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................CTGGCAGCAG------CAG---------C-------------------------AGTC.............................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................C---ACTAGCA---GCGCCAG------------------------CAAA..............................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................AGCAA------------CAACAACAAC---ACTAGCA---GT...............................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GAATCAGAATGTT-G----------------------------------TCAACGCACTCGTGTCTGATTGCAAC------------------TCT-----------------------------------------A---------------------------GCGACAGCAACAACAACAAC-----------------------------------------------AGCAGC---A---------CCTGCAAC---------AACAACACTAGCAGCACC------AG------------------CAAC---AATAACA------CTGG------------------------CAGCAGCAGCAACAACAA---------TACTGGCAGCAGCAG-----------C-----------AGTTGCATCAACAGA-----------------A-----------C----	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCAGCAG-----------C-----------AGTTGCATC........................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................AGC---A---------CCTGCAAC---------AACAACACTAGCA.................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................AC------------------TCT-----------------------------------------A---------------------------GCGACAGCAACAACA......................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........ATGTT-G----------------------------------TCAACGCACTCGTGTCTGA......................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...TCAGAATGTT-G----------------------------------TCAACGCACTCGTGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAACA.................................................................................................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAG-----------C-----------AGTTGCA..........................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GAATCAGAATGTT-G----------------------------------TCAACGCACTCGTGTCTGATTGCAAC------------------TCT-----------------------------------------A---------------------------GCGACAGCAACAACAACAAC-----------------------------------------------AGCAGC---A---------CCTGCAAC---------AACAACACTAGCAGCACC------AG---------------------C---AACAATA------ACAC------------------------TGGCAGCAGCAGCAGTTGCAT------CAA---------CAG----AACAAAGCCAGCCAAATGGCTCAATGAGAACAGTA---------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................................................................TGCAAC---------AACAACACTAGCAGCACC------AG---------------------C---...........................................................................................................................................................	27	1	1.00	1	1	0	0	0

droYak3

TCGAAA------------TCAT--CAGCGT----------C---------AAAAGCAG---------------------------------------------------CAGCAGCAACAGCAGCAAC---------------------------------------AGCA-----------------------GCAGCAACAGCAGCAAC------------------AACAGCAGC---A---------GCAGCAGCAACA---GCAGCA------ACATCAGC---AACAA------------CAGCAACAAC---AGCAGCA---GCAACAG------------------------CAACAACAGCAAAAGCAGCAA------CAG---------C-------------------------AGCAACAACAGCAGCA---------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................GT----------C---------AAAAGCAG---------------------------------------------------CAGCAGCAACAGC................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................AAAGCAGCAA------CAG---------C-------------------------AGCAACAAC........................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................GCA------ACATCAGC---AACAA------------CAGCAACA................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AGCAGCAAC------------------AACAGCAGC---A---------GCAGC..........................................................................................................................................................................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................C------------------AACAGCAGC---A---------GCAGCAGC.......................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................AGC---A---------GCAGCAGCAACA---GCA.............................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAA------CAG---------C-------------------------AGCAACAACAGCAGC..................................	27	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................A-----------------------GCAGCAACAGCAGCAAC------------------AACAGCAGC---.........................................................................................................................................................................................................................................	27	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0
......................................................GCAG---------------------------------------------------CAGCAGCAACAGCAGC.............................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................CAAC---------------------------------------AGCA-----------------------GCAGCAACAGCA............................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AGCAGCA---GCAACAG------------------------CAACAAC...........................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CAGC---A---------GCAGCAGCAACA---GCAGC...........................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................CAACAGCAGCAAC------------------AACAGCAGC---A---------...............................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................AG---------------------------------------------------CAGCAGCAACAGCAGCA............................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................C------------------AACAGCAGC---A---------GCAGCAGCA......................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CAA------CAG---------C-------------------------AGCAACAACAGCAGCA---------------------------------	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................GCAG---------------------------------------------------CAGCAGCAACAGCAGCAAC---------------------------------------A..................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................AACAGCAGCAAC---------------------------------------AGCA-----------------------GCA.....................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................ACAGCAGC---A---------GCAGCAGCAACA---GCA.............................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................AGCAGC---A---------GCAGCAGCAACA---GCAGCA------AC..................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
............................................................................................................................CAAC---------------------------------------AGCA-----------------------GCAGCAACAGC.............................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................CAA------------CAGCAACAAC---AGCAGCA---.................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AACAGCAGCAAC------------------AACAGCAGC---A---------GC.............................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................AGCAACAAC---AGCAGCA---GCAACAG------------------------C.................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GCAAC------------------AACAGCAGC---A---------GCAGC..........................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................GC---A---------GCAGCAGCAACA---GCAGCA------ACA.................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CAGC---A---------GCAGCAGCAACA---GCAGCA------AC..................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................................GCA-----------------------GCAGCAACAGCAGCAAC------------------.....................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................G---------------------------------------------------CAGCAGCAACAGCAGCAAC---------------------------------------...................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................CAGCAACAAC---AGCAGCA---GCAACAG------------------------C.................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CAGCAGCAAC------------------AACAGCAGC---A---------...............................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................CAG---------C-------------------------AGCAACAACAGCAGCA---------------------------------	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GCAACAAC---AGCAGCA---GCAA.............................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................CAGCAACAAC---AGCAGCA---GCA..............................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................AGC---A---------GCAGCAGCAACA---GCAGC...........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0

droEre2

CCAACCGAATGCT-GCAGCGC---------AGCCTTGCAG----------------CCAT-C------------CAGCGGC------G-----------ACGCGTTGCA-----T---------------GTGC---AG------------------------CAGCAGCA-----------------------GCACCAGCAACAGCAAC------------------ATCAGCAGC---A---------ACATCA---------TCAGCA------GCAGC---------AG---------------CAGCAAC---AGCAGCAGCA---ACAG------------------------CAGCAACAACAGCAGCAACAA------CAG---------C-------------------------AGCAGCAGCAGCAGG-----------------A-----------CACGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................................................................................................................................................................AGCAAC------------------ATCAGCAGC---A---------ACATCA---------TC..............................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ACATCA---------TCAGCA------GCAGC---------AG---------------CAGCA................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................AG------------------------CAGCAGCA-----------------------GCACCAGCAACA............................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CAACAA------CAG---------C-------------------------AGCAGCAGCA.......................................	20	20	0.10	2	0	0	0	0	0	2	0
......................................................................................................................................................................................................................................................................................................................................................................................GCAACAA------CAG---------C-------------------------AGCAGCAGCA.......................................	21	20	0.10	2	1	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAACAA------CAG---------C-------------------------.................................................	22	19	0.05	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................CAGCA------GCAGC---------AG---------------CAGCAAC---AGCAGC.....................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................TCA---------TCAGCA------GCAGC---------AG---------------CAGC.................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAA------CAG---------C-------------------------AGCA.............................................	19	20	0.05	1	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................AGCAACAA------CAG---------C-------------------------AGCAGCAGC........................................	21	20	0.05	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAACAA------CAG---------C-------------------------AGCA.............................................	23	20	0.05	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAACAA------CAG---------C-------------------------.................................................	19	20	0.05	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAACAA------CAG---------C-------------------------A................................................	19	20	0.05	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................AGCA---ACAG------------------------CAGCAACAACAGC.....................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................CAGC---------AG---------------CAGCAAC---AGCAGC.....................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................ACAA------CAG---------C-------------------------AGCAGCAGCAGC.....................................	20	20	0.05	1	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CA---ACAG------------------------CAGCAACAACAGCAGCA.................................................................................................	23	20	0.05	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAA------CAG---------C-------------------------AGCAGCAGC........................................	23	20	0.05	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................C---------AG---------------CAGCAAC---AGCAGCAGC..................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CAAC---AGCAGCAGCA---ACAG------------------------CAGCA.............................................................................................................	23	20	0.05	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................AACAA------CAG---------C-------------------------AGCAGCAGCAGCAG...................................	23	20	0.05	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAA------CAG---------C-------------------------AGCAG............................................	20	20	0.05	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAA------CAG---------C-------------------------AGCAGCAGCAG......................................	25	20	0.05	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................AG------------------------CAGCAACAACAGCAGCA.................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0

dmo_418

scaffold_6308:823844-823933 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-2.0	-1.9	-1.7