dmo_407

Name	Class	Family	Strand
(CA)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ATTCCGTTTCTCGGATGATGCATTCACATCCACATTTATATCGACCATAGGTAAGTAAATGGCGCAGTCCACACTTAACATAACTTCACACATTCATACATATATGTGAAGACATATGCATGTGTGTGTTTGTGTGTGCATGTACCTGCAGACCTGCTGTGTATGTGTGTGTGCTGGCGAGCGGCATCGTCAATTGCCAATGTTTATGTATGTGTGTGTAGATTTTGTAGGCGGCGCCCAAAAACAACAAG ************************************************....((((.(((((((((.(((((............((((((..((((((((((((((....)))))..)))))))))..)))))).((((((((..(((....))).))))))))))))).))))((.....))..))))).))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	V049 head
................................................AGGTAAGTAAATGGCGCA.........................................................................................................................................................................................	18	0	1	1.00	1	1	0	0
......TTTCTCGGATGATGCATTCAC................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0
.........................................................................................................GTGAAGACTTATGCAACTGT..............................................................................................................................	20	3	13	0.08	1	0	1	0
................................................................................................................................................................................................................................TTGTAGGCGCCGCCCTATA........	19	3	18	0.06	1	0	0	1

TAAGGCAAAGAGCCTACTACGTAAGTGTAGGTGTAAATATAGCTGGTATCCATTCATTTACCGCGTCAGGTGTGAATTGTATTGAAGTGTGTAAGTATGTATATACACTTCTGTATACGTACACACACAAACACACACGTACATGGACGTCTGGACGACACATACACACACACGACCGCTCGCCGTAGCAGTTAACGGTTACAAATACATACACACACATCTAAAACATCCGCCGCGGGTTTTTGTTGTTC ************************************************....((((.(((((((((.(((((............((((((..((((((((((((((....)))))..)))))))))..)))))).((((((((..(((....))).))))))))))))).))))((.....))..))))).))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	M046 female body
........................................................................TGAATTGTGTTGTAGAGTG................................................................................................................................................................	19	3	20	0.10	2	2	0
...................................................................................................................................................................................................CGGTTAGAAAGACATACA......................................	18	2	14	0.07	1	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6308:598247-598497 -	dmo_407	ATTCC--------------------------------------------------------------GTTTCTCGGATGATGCATTC--------ACATCCACATTTATATCG-ACCATAGGT------AA------GTAAATGGCGCAGTC-------------------------------CA--CACTTAACATAA------CTTCA-----------------CACATTCAT--------------ACATAT-------------ATG------------TG--AAGACATATGC---------------ATGT--GTG-----TG--TTTGTGTGT-------------------------------------GCATGTACCTGCAGACCTGC-------------------------T--GTGTATGTGTGTGTGCTGGCGAG-CGG---CA-TCGTCAATTGCCAAT-----------GTTTATGTATGTGTGTGTAGATTTTGTAGGCGGCGCCCAAAAACA------------ACAAG
droVir3	scaffold_13042:553529-553775 +	dvi_14169	ATTCC--------------------------------------------------------------GCTTTTCGGATGATGCATTC--------ACATCAACATTTATATCA-ACCATAGGT------AA------GCAAATGGCGCAGT--------------------------------------CTTC-----------------------------------AGTTACCAATGCCTATGTATGTATGC---------------GTGTT--CTGTGCC--------------GT----G--TGTGTGTG---AGTGTGTGTGT-------ATG---T-----------------------------ATTGCATG----TACCTGCAAAGTGGC---------------TGCCGCTCTTTGGGTGTGTGTTTGTGTGTTGGTAAG-AGG---CA-TTGTCAATTGCCAATATGTGTT-----------------------------AAAGGCGGCGCCCAAAAACC------------ACAAG
droGri2	scaffold_15203:5877609-5877827 +		CTTTC--------------------------------------------------------------GTTTCTCAGATGATGCCTTC--------ACATCAACATTTATATCA-ACCATAGGT------AA------GTAAATGGCGCAGTG-------------------------------CA--CTCTTC-----------------------------------ACTTACAT--------------GTGCAT-------------GTG--------------------------T----GA--ATG--C-GTGTGTGTGTGTGT-------ATA---T-----------------------------AT-GCATGTACATCCCTGCAGAGTTGC---------------GTGCGCTCAAT--GTGGGTGAGTGAGTGTTGGTAAG-CGG---CAGTTGTCAG-------------TT-----------------------------GTTGGCGGCGCCCAATAACA------------ACAAG
droWil2	scf2_1100000004943:1825307-1825489 +		CATTC--------------------------------------------------------------GAGTCTACCTTCATACATAT--------ACATATGTATGTATGTATGTACATACAT------ATGTGTACATAAGTGG-----------------------------------------A-------TATAC------TTACATACATAC---------ATACATGT------------------AC---------------ATGC----------------ATATATGTAC---------------ATGT--ATA-----TG--TATGTATG-T----ATACATGTATATGCATGTACATGTA--------------------------------------------------------TGTATGTATGTATACAGACACACCGG---CA-T---------------------------------------------------------------------------------------
dp5	XL_group1e:7139164-7139443 -		ATTCC--------------------------------------------------------------GTTTCTCCGATGATGCCTTC--------ACCTCCACCTTTATATCC-ACCATAGGT------GA------GTGACATGGGCCATGGCCTGTCCAAAAGGCAAACGGGATATTCGTACAAA-------CACTT------TGCCTACAATTTACTTATGTAGTACATGT----G--TATGCACATGTGT--AGATGCCGAAGTTGTGTCAGCTGTGT-----------------------------------------------------------------------------------------------------------------CAGTGGGTAGGCGGTGGCGGCTGTGTCAAGGATATGCGTGTGTGTAATTGGGCG-TGG---CA-TTGTC---------------TT-----------------------------ATCGGTGGGATC-AGAAACGGGAATATTCCCTGCAAA
droPer2	scaffold_13:1414311-1414590 +		ATTCC--------------------------------------------------------------GTTTCTCCGATGATGCCTTC--------ACCTCGACCTTTATATCC-ACCATAGGT------GA------GTGACATGGGCCATGGCCTGTCCAAAAGGCAAACGGGATATTCGTACAAA-------CACTT------TGCCTACAATTTACTTATGTAGTACATGT----G--TATGCACATGTGT--AGATGCCGAAGTTGTGTCAGCTGTGG-----------------------------------------------------------------------------------------------------------------CAGTGGGTAGGCGGCGGCGACTGTGTCAAGGATATGCGTGTGTGTAATTGGGCG-TGG---CA-TTGTC---------------TT-----------------------------ATCGGTGGGATC-AGAAACGGGAATATTCCCTGCAAA
droAna3	scaffold_13417:1660486-1660585 -		GTTCC--------------------------------------------------------------GCTTCTCCGATGATGCCTTC--------ACCTCCACATTCATATCG-ACCATAGGT------GA------GTAGTGCGCC--ACAC-----------------CGGGA--------CA--CCCTG-----------------------------------TACGCGCAT--------------ACAT---------------AT------------------------------------------------------------------ATGT-------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396621:211183-211239 +		GTTCC--------------------------------------------------------------GTTTCTCGGATGATGCCTTC--------ACCTCAACGTTTATATCG-ACCATAGGT------GA------GTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000301542:42512-42566 -		GTTCC--------------------------------------------------------------GCTTCTCCGATGACGCCTTC--------ACCTCCACGTTCATCTCG-ACCATTGGT------AA------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000451789:391962-392154 +		GTTCC--------------------------------------------------------------GTTTCTCAGATGACGCCTTC--------ACGTCCACGTTTATATCG-ACCATCGGT------GA------GTAACGGCAC--------------------------------CTTGCACA--GGC--CAAA-------ATG--------TATCCCCATCGTACGCAC----------ACACATGCAC---------------ATGTCAGCTGAACAGCC--AGGATATGCGT----G--TGTATGTG---GATGCGTGTGT-------GTG---T-----------------------------GT---------------------------------------------------------CGGTGTGTTTGACTGGGCG-TGG---CA-CTGCC-----------------------------------------------------------------------------------
droEle1	scf7180000491272:1177184-1177306 +		GTTCC--------------------------------------------------------------GATTTTCGGATGATGCCTTC--------ACGTCCACGTTTATATCG-ACCATAGGT------GA------GTAACGGGAC--------------------------------CTTCCATA----------------------------------------------------------------CAT---------------ATATCAGCTGTACAGCC--AGGATAAGTGC---------------GTGT--GCG-----AG--TGTGAGTGT-------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------C---
droRho1	scf7180000779616:33285-33404 -		GTTCC--------------------------------------------------------------GATTCTCGGATGATGCCTTC--------ACGTCCACCTTTATTTCG-ACCATAGGT------GA------GTAACGGGAG--------------------------------CTTACATA-------CAT-----------------------------------------------------ACAT---------------ATATCAGCTGTACAGCC--AGGACATGTGC-----------------------G-----AA--AGTGTGTGT-------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302126:2875855-2876009 +		GTTCC--------------------------------------------------------------GGTTCTCGGACGATGCCTTC--------ACCTCCACATTCATATCG-ACCATCGGT------GA------GTAACGGCAG--------------------------------CTGGCATA--------------------------------------------CACACATGCACACACACACACGC---------------ACGTCAGCTGCACGGCC--AGGATATGTGC----G--CCTGTGTG---GGTGTGCGTGC-------ATG---T-----------------------------GT---------------------------------------------------------------G------------------------------------------------------------------------------------------------------CCTGC---
droTak1	scf7180000415248:195028-195173 -		GTTCC--------------------------------------------------------------GATTCTCGGATGATGCCTTC--------ACCTCCACGTTTATATCG-ACCATAGGT------GA------GTAACGGGAC--------------------------------CTTACGCA-------CAT---------------------------CGGCACGCGT--------ACATACATACAC---------------ATGTCAGCTGCACAGCCTAAGGATATGTGC---------------GGCT--GTG-----TG--TGTGGGTGT-------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409230:272974-273166 -		GTTCC--------------------------------------------------------------GATTTTCGGATGATGCTTTT--------ACGTCGACGTTTATATCG-ACCATAGGT------GA------GTAACGGGAC--------------------------------CCTACGCA-------CATAGTCATACATACTTATATCCACCCGCAAGCC--------------ACACACATGCTC---------------ATGTCAGCTGCACAGCC--AGGATATATTTGTGTGAA----TGT-GTAT--GTG----------------------------------------------------------------------------------------------------------TGTGTGTGTGTGACTGGGCG-TGG---CA-CTGCC-----------------------------------------------------------------------------------
dm3	chrX:20122782-20122948 +		GTTCC--------------------------------------------------------------GGTTCTCGGATGATGCATTC--------ACGTCCACGTTCATATCG-ACCATAGGT------GA------GTAACGGGAC--------------------------------CGTACGCA-------CATAC------TTGCATCTGTCCACCCGCACCGCACACAC----A--CACACACGCGCAC---------------ATGTCAGCTGCACAGCC--AGGATATATAT---------------ACGT--GTG-----TG--TGGGTGTGT-------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	x:18925838-18926002 +		GTTCC--------------------------------------------------------------GGTTCTCGGATGATGCATTC--------ACGTCCACGTTCATATCG-ACCATAGGT------GA------GTAACGGGAC--------------------------------CGTACGCA-------CATAC------TTGCATCTGTCCACCCGCACCGCACACAC--------ACACACGCGCAC---------------ATGTCAGCTGCACAGCC--AGGATATATAT---------------ACGT--GTG-----TG--TGGGTGTGT-------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_8:2317063-2317227 +		GTTCC--------------------------------------------------------------GGTTCTCGGATGATGCATTC--------ACGTCCACGTTCATATCG-ACCATAGGT------GA------GTAACGGGAC--------------------------------CGTACGCA-------CATAC------TTGCATCTGTCCACCCGCACCACACACAC--------ACACACGCGCAC---------------ATGTCAGCTGCACAGCC--AGGATATATAT---------------ACGT--GTG-----TG--TGGGTGTGT-------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	2R:17378126-17378353 -		ATCA-------------------------------------------------------------------------------------------------TCATTTATATTA-TTAACAAGG------GA------TCAAAACAGACAAGC-------------------------------CA--AACTTC-----------------------------------ACACACACAT----AGCCACACGCAC---------------ACGTGAAC----------------ACTTTCATATGCA----TAT-GCAT--GTG-----TGTGTGTGTGTGT-----------------GGAAGTGCTACTG---------------------TGTTAG-----------------------------------TGTGTATGCGTGTTAACCGGAAACC-AGAGCAACCGCAAAT----GACAAGGGAGTATGTCCGTCTAAACTGCTTCCCTTCGCAGC----GAAAACA------------TCAAA
droEre2	scaffold_4690:16159062-16159304 +		ATTCCCAACTGGTTCTAGTGAGGACTGTAAGGTATGTCTTCTAATTTAGAGTCGCAGCAGTGAGTCTAGTGTGTGTGTAGTGTATCTACCGGTGTATGTATGTATTTATGCAT-GC---ATGTACCGCTGTATGTATGTAAG---------------------------------------TATGCA-------TGTAT------GTATGTTTGTTTGTATGTAT-----------------------------GT-------------ATG--------------------------T----AT--GTA--T-GTATGTATGTATGT-------ATG---TATGTATGTATGTATGTATGTATGTATGTA--------------------------------------------------------TGTATGTATGTAT------------------------------------------------------------------------------------------------------GT---

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

ATTCC--------------------------------------------------------------GTTTCTCGGATGATGCATTC--------ACATCCACATTTATATCG-ACCATAGGT------AA------GTAAATGGCGCAGTC-------------------------------CA--CACTTAACATAA------CTTCA-----------------CACATTCAT--------------ACATAT-------------ATG------------TG--AAGACATATGC---------------ATGT--GTG-----TG--TTTGTGTGT-------------------------------------GCATGTACCTGCAGACCTGC-------------------------T--GTGTATGTGTGTGTGCTGGCGAG-CGG---CA-TCGTCAATTGCCAAT-----------GTTTATGTATGTGTGTGTAGATTTTGTAGGCGGCGCCCAAAAACA------------ACAAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................AGGT------AA------GTAAATGGCGCA..............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
....................................................................TTTCTCGGATGATGCATTC--------AC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droVir3

ATTCC--------------------------------------------------------------GCTTTTCGGATGATGCATTC--------ACATCAACATTTATATCA-ACCATAGGT------AA------GCAAATGGCGCAGT--------------------------------------CTTC-----------------------------------AGTTACCAATGCCTATGTATGTATGC---------------GTGTT--CTGTGCC--------------GT----G--TGTGTGTG---AGTGTGTGTGT-------ATG---T-----------------------------ATTGCATG----TACCTGCAAAGTGGC---------------TGCCGCTCTTTGGGTGTGTGTTTGTGTGTTGGTAAG-AGG---CA-TTGTCAATTGCCAATATGTGTT-----------------------------AAAGGCGGCGCCCAAAAACC------------ACAAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTGTTGGTAAG-AGG---CA-........................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TTCGGATGATGCATTC--------ACATCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....C--------------------------------------------------------------GCTTTTCGGATGATGCATTC--------ACAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TT--CTGTGCC--------------GT----G--TGTGTGTG---......................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
ATTCC--------------------------------------------------------------GCTTTTCGGATGATGCAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GCATTC--------ACATCAACATTTATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................AATGCCTATGTATGTATGC---------------GT....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CTTC-----------------------------------AGTTACCAATGCCTATG..............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATTTATATCA-ACCATAGGA------..................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................ATCAACATTTATATCA-ACCATAGGA------..................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....C--------------------------------------------------------------GCTTTTCGGATGATGCATTC--------AC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................CCTGCAAAGTGGC---------------TGCCGCTCTT............................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...................................................................................................................................................................................................................................................TGTATGTATGC---------------GTGTT--CTG............................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................CTGTGCC--------------GT----G--TGTGTGTG---T.....................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

CTTTC--------------------------------------------------------------GTTTCTCAGATGATGCCTTC--------ACATCAACATTTATATCA-ACCATAGGT------AA------GTAAATGGCGCAGTG-------------------------------CA--CTCTTC-----------------------------------ACTTACAT--------------GTGCAT-------------GTG--------------------------T----GA--ATG--C-GTGTGTGTGTGTGT-------ATA---T-----------------------------AT-GCATGTACATCCCTGCAGAGTTGC---------------GTGCGCTCAAT--GTGGGTGAGTGAGTGTTGGTAAG-CGG---CAGTTGTCAG-------------TT-----------------------------GTTGGCGGCGCCCAATAACA------------ACAAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-------------TT-----------------------------GTTGGCGGCGCCCAATA....................	21	1	1.00	1	1	0
...........................................................................................................ATATCA-ACCATAGGT------AA------GTAA......................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	1	0

droWil2

CATTC--------------------------------------------------------------GAGTCTACCTTCATACATAT--------ACATATGTATGTATGTATGTACATACAT------ATGTGTACATAAGTGG-----------------------------------------A-------TATAC------TTACATACATAC---------ATACATGT------------------AC---------------ATGC----------------ATATATGTAC---------------ATGT--ATA-----TG--TATGTATG-T----ATACATGTATATGCATGTACATGTA--------------------------------------------------------TGTATGTATGTATACAGACACACCGG---CA-T---------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

ATTCC--------------------------------------------------------------GTTTCTCCGATGATGCCTTC--------ACCTCCACCTTTATATCC-ACCATAGGT------GA------GTGACATGGGCCATGGCCTGTCCAAAAGGCAAACGGGATATTCGTACAAA-------CACTT------TGCCTACAATTTACTTATGTAGTACATGT----G--TATGCACATGTGT--AGATGCCGAAGTTGTGTCAGCTGTGT-----------------------------------------------------------------------------------------------------------------CAGTGGGTAGGCGGTGGCGGCTGTGTCAAGGATATGCGTGTGTGTAATTGGGCG-TGG---CA-TTGTC---------------TT-----------------------------ATCGGTGGGATC-AGAAACGGGAATATTCCCTGCAAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................CGATGATGCCTTC--------ACCTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................AGGCAAACGGGATATTCGTACAAA-------CACTT------......................................................................................................................................................................................................................................................................................................................................................	29	1	2.00	2	0	0	0	0	0	0	0	0	2	0
...............................................................................................................................................................................................................................................................................GTCAGCTGTGT-----------------------------------------------------------------------------------------------------------------CAGTGGGTAG..............................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................GATGATGCCTTC--------ACCTCCACCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTC---------------TT-----------------------------ATCGGTGGGATC-........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TTGTC---------------TT-----------------------------ATCGGTGGGATC-........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCG-TGG---CA-TTGTC---------------TT-----------------------------ATCG.................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................GATGCCGAAGTTGTGTCAGCTGTGT-----------------------------------------------------------------------------------------------------------------C.......................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AAA-------CACTT------TGCCTACAATTTA.........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..TCC--------------------------------------------------------------GTTTCTCCGATGATGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TCAGCTGTGT-----------------------------------------------------------------------------------------------------------------CAGTGGGTAG..............................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................GT-----------------------------------------------------------------------------------------------------------------CAGTGGGTAGGCGGTGGCGGC...................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................TCTCCGATGATGCCTTC--------ACCTCCACCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
ATTCC--------------------------------------------------------------GTTTCTCCGATGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................CATAGGT------GA------GTGACATGGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................GTTGTGTCAGCTGTGT-----------------------------------------------------------------------------------------------------------------CAGT....................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..TCC--------------------------------------------------------------GTTTCTCCGATGATGCCTTC--------ACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAAGGATATGCGTGTGTG............................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTCAAGGATATGCGTGTG..............................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

ATTCC--------------------------------------------------------------GTTTCTCCGATGATGCCTTC--------ACCTCGACCTTTATATCC-ACCATAGGT------GA------GTGACATGGGCCATGGCCTGTCCAAAAGGCAAACGGGATATTCGTACAAA-------CACTT------TGCCTACAATTTACTTATGTAGTACATGT----G--TATGCACATGTGT--AGATGCCGAAGTTGTGTCAGCTGTGG-----------------------------------------------------------------------------------------------------------------CAGTGGGTAGGCGGCGGCGACTGTGTCAAGGATATGCGTGTGTGTAATTGGGCG-TGG---CA-TTGTC---------------TT-----------------------------ATCGGTGGGATC-AGAAACGGGAATATTCCCTGCAAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGTGTCAAGGATATGC...................................................................................................................	20	1	4.00	4	4	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGGATATGCGTGTGTG............................................................................................................	20	1	1.00	1	0	0	0	0	0	1

droAna3

GTTCC--------------------------------------------------------------GCTTCTCCGATGATGCCTTC--------ACCTCCACATTCATATCG-ACCATAGGT------GA------GTAGTGCGCC--ACAC-----------------CGGGA--------CA--CCCTG-----------------------------------TACGCGCAT--------------ACAT---------------AT------------------------------------------------------------------ATGT-------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................ACATTCATATCG-ACCATAGGC------..................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
................................................................................TGCCTTC--------ACCTCCACATTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0

droBip1

GTTCC--------------------------------------------------------------GTTTCTCGGATGATGCCTTC--------ACCTCAACGTTTATATCG-ACCATAGGT------GA------GTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GTTCC--------------------------------------------------------------GCTTCTCCGATGACGCCTTC--------ACCTCCACGTTCATCTCG-ACCATTGGT------AA------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTTCC--------------------------------------------------------------GTTTCTCAGATGACGCCTTC--------ACGTCCACGTTTATATCG-ACCATCGGT------GA------GTAACGGCAC--------------------------------CTTGCACA--GGC--CAAA-------ATG--------TATCCCCATCGTACGCAC----------ACACATGCAC---------------ATGTCAGCTGAACAGCC--AGGATATGCGT----G--TGTATGTG---GATGCGTGTGT-------GTG---T-----------------------------GT---------------------------------------------------------CGGTGTGTTTGACTGGGCG-TGG---CA-CTGCC-----------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GTTCC--------------------------------------------------------------GATTTTCGGATGATGCCTTC--------ACGTCCACGTTTATATCG-ACCATAGGT------GA------GTAACGGGAC--------------------------------CTTCCATA----------------------------------------------------------------CAT---------------ATATCAGCTGTACAGCC--AGGATAAGTGC---------------GTGT--GCG-----AG--TGTGAGTGT-------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------C---	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GTTCC--------------------------------------------------------------GATTCTCGGATGATGCCTTC--------ACGTCCACCTTTATTTCG-ACCATAGGT------GA------GTAACGGGAG--------------------------------CTTACATA-------CAT-----------------------------------------------------ACAT---------------ATATCAGCTGTACAGCC--AGGACATGTGC-----------------------G-----AA--AGTGTGTGT-------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTTCC--------------------------------------------------------------GGTTCTCGGACGATGCCTTC--------ACCTCCACATTCATATCG-ACCATCGGT------GA------GTAACGGCAG--------------------------------CTGGCATA--------------------------------------------CACACATGCACACACACACACGC---------------ACGTCAGCTGCACGGCC--AGGATATGTGC----G--CCTGTGTG---GGTGTGCGTGC-------ATG---T-----------------------------GT---------------------------------------------------------------G------------------------------------------------------------------------------------------------------CCTGC---	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GTTCC--------------------------------------------------------------GATTCTCGGATGATGCCTTC--------ACCTCCACGTTTATATCG-ACCATAGGT------GA------GTAACGGGAC--------------------------------CTTACGCA-------CAT---------------------------CGGCACGCGT--------ACATACATACAC---------------ATGTCAGCTGCACAGCCTAAGGATATGTGC---------------GGCT--GTG-----TG--TGTGGGTGT-------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GTTCC--------------------------------------------------------------GATTTTCGGATGATGCTTTT--------ACGTCGACGTTTATATCG-ACCATAGGT------GA------GTAACGGGAC--------------------------------CCTACGCA-------CATAGTCATACATACTTATATCCACCCGCAAGCC--------------ACACACATGCTC---------------ATGTCAGCTGCACAGCC--AGGATATATTTGTGTGAA----TGT-GTAT--GTG----------------------------------------------------------------------------------------------------------TGTGTGTGTGTGACTGGGCG-TGG---CA-CTGCC-----------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GTTCC--------------------------------------------------------------GGTTCTCGGATGATGCATTC--------ACGTCCACGTTCATATCG-ACCATAGGT------GA------GTAACGGGAC--------------------------------CGTACGCA-------CATAC------TTGCATCTGTCCACCCGCACCGCACACAC----A--CACACACGCGCAC---------------ATGTCAGCTGCACAGCC--AGGATATATAT---------------ACGT--GTG-----TG--TGGGTGTGT-------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................................................................................................................................................ATGTCAGCTGCACAGCC--AGGA...............................................................................................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................AGCC--AGGATATATAT---------------ACGT--GT.................................................................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CTCGGATGATGCATTC--------ACGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCATATCG-ACCATAGGT------GA------GT........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TATATAT---------------ACGT--GTG-----TG--TGGGT..................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................................................................................................................................................CAC----A--CACACACGCGCAC---------------ATG...................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CGCACACAC----A--CACACACGCGCA......................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................CACAC----A--CACACACGCGCAC---------------AT....................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CCCGCACCGCACACAC----A--CATT..............................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CACACAC----A--CACACACGCGCAC---------------......................................................................................................................................................................................................................................................................................	21	16	0.13	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CCGCACACAC----A--CACACACG..........................................................................................................................................................................................................................................................................................................	19	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CGCACACAC----A--CACACACGCG........................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................ACACAC----A--CACACACGCGCA......................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GTTCC--------------------------------------------------------------GGTTCTCGGATGATGCATTC--------ACGTCCACGTTCATATCG-ACCATAGGT------GA------GTAACGGGAC--------------------------------CGTACGCA-------CATAC------TTGCATCTGTCCACCCGCACCGCACACAC--------ACACACGCGCAC---------------ATGTCAGCTGCACAGCC--AGGATATATAT---------------ACGT--GTG-----TG--TGGGTGTGT-------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................GTTCTCGGATGATGCATTC--------AC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CCACGTTCATATCG-ACCATAGGC------..................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TC--------ACGTCCACGTTCATATCG-A................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CAC---------------ATGTCAGCTGCACAGCC--A..................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....C--------------------------------------------------------------GGTTCTCGGATGATGCATTC--------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................ATATCG-ACCATAGGT------GA------GTA.......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................TCCACCCGCACCGCACACAC--------AC...............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TCTGTCCACCCGCACCGCACACAC--------ACACA............................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTCC--------------------------------------------------------------GGTTCTCGGATGATGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................TCTCGGATGATGCATTC--------ACGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....C--------------------------------------------------------------GGTTCTCGGATGATGCATTT--------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................TCG-ACCATAGGT------GA------GTAACG....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................C--AGGATATATAT---------------ACGT--GTG-----TG--.......................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....C--------------------------------------------------------------GGTTCTCGGATGATGCATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................CTCGGATGATGCATTC--------ACGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TCTCGGATGATGCATTC--------ACGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................TTCTCGGATGATGCATTC--------ACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................TTCTCGGATGATGCATTC--------ACGTCCACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................AGGT------GA------GTAACGGGAC--------------------------------CGTACG..........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................TCCACCCGCACCGCACACAC--------ACA..............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................AGGT------GA------GTAACGGGAC--------------------------------CG..............................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................ATTC--------ACGTCCACGTTCATATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GCACCGCACACAC--------ACACACGC.........................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TATATAT---------------ACGT--GTG-----TG--T......................................................................................................................................................................................................................	17	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GTTCC--------------------------------------------------------------GGTTCTCGGATGATGCATTC--------ACGTCCACGTTCATATCG-ACCATAGGT------GA------GTAACGGGAC--------------------------------CGTACGCA-------CATAC------TTGCATCTGTCCACCCGCACCACACACAC--------ACACACGCGCAC---------------ATGTCAGCTGCACAGCC--AGGATATATAT---------------ACGT--GTG-----TG--TGGGTGTGT-------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................CACCACACACAC--------ACACACGCG........................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	1	0
...................................................................GGTTCTCGGATGATGCATTC--------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................CCGCACCACACACAC--------ACACACG..........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................GCACCACACACAC--------ACACACGCG........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................C------TTGCATCTGTCCACCCGCA...................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
...............................................................................................................CG-ACCATAGGT------GA------GTAACGGG..................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
................................................................................................................G-ACCATAGGT------GA------GTAACGGG..................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
..........................................................................................................CATATCG-ACCATAGGT------GA------GT........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
............................................................................ATGATGCATTC--------ACGTCCACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
............................................................................................................................................................................................................................CGCACCACACACAC--------ACACACG..........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
...................................................................................................................................................................................................................................................................................................ATATATAT---------------ACGT--GTG-----TG--TGGG...................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
..................................................................................................TCCACGTTCATATCG-ACCATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................CCACACACAC--------ACACACGCGCA......................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	1
...........................................................................................................................................................................................................................CCGCACCACACACAC--------ACACG............................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	1	0
.................................................................................................................................................................................................................................CACACACAC--------ACACACGCGCAC---------------......................................................................................................................................................................................................................................................................................	21	11	0.09	1	0	0	1	0
............................................................................................................................................................................................................................CGCACCACACACAC--------ACACG............................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0

droYak3

ATCA-------------------------------------------------------------------------------------------------TCATTTATATTA-TTAACAAGG------GA------TCAAAACAGACAAGC-------------------------------CA--AACTTC-----------------------------------ACACACACAT----AGCCACACGCAC---------------ACGTGAAC----------------ACTTTCATATGCA----TAT-GCAT--GTG-----TGTGTGTGTGTGT-----------------GGAAGTGCTACTG---------------------TGTTAG-----------------------------------TGTGTATGCGTGTTAACCGGAAACC-AGAGCAACCGCAAAT----GACAAGGGAGTATGTCCGTCTAAACTGCTTCCCTTCGCAGC----GAAAACA------------TCAAA

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

ATTCCCAACTGGTTCTAGTGAGGACTGTAAGGTATGTCTTCTAATTTAGAGTCGCAGCAGTGAGTCTAGTGTGTGTGTAGTGTATCTACCGGTGTATGTATGTATTTATGCAT-GC---ATGTACCGCTGTATGTATGTAAG---------------------------------------TATGCA-------TGTAT------GTATGTTTGTTTGTATGTAT-----------------------------GT-------------ATG--------------------------T----AT--GTA--T-GTATGTATGTATGT-------ATG---TATGTATGTATGTATGTATGTATGTATGTA--------------------------------------------------------TGTATGTATGTAT------------------------------------------------------------------------------------------------------GT---	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................AGTGAGTCTAGTGTGTGTGTAGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
..........................................................AGTGAGTCTAGTGTGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
............................................................TGAGTCTAGTGTGTGTGTAGTGTATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
................................................................................TGTATCTACCGGTGTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0

dmo_407

scaffold_6308:598297-598447 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads