dmo_390

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CGCATCCATTACGCCAGGACATTTGTCGGGCAGAGCTACCGGATCTGTCGGTATTGCACCGGACCACCAACCATACGACGGCTAGGGGAAGCAGCGACGCCAACGGACCCGCAAAACGCCCACTCGGCAACAAAGGGGGGGGGGGGGGGTGTGATGAATCACAAATTTACCCAACCCCGACCCCGAGAAAACTGTCCCCTTAATCCTCTTTCCACCCCGATCTCAATAAATAGCAAAGATTAAGAAAATAT ********************************************************************************.................((.................(((.(((.........))))))..))*********************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V041 embryo
..................................................................................TAGGGGAAGCAGCGACGCCAACGGAC...............................................................................................................................................	26	0	5	1.00	5	4	1	0
...........................................................................................................................TCGGCAACAAAGGGGGGGGGG...........................................................................................................	21	0	2	0.50	1	1	0	0
...................................................................................AGGGGAAGCAGCGACGCCAACGG.................................................................................................................................................	23	0	5	0.40	2	1	0	1
...................................................................................................................................AAAGGGTTGGGGGGGTGGTGTG..................................................................................................	22	3	3	0.33	1	1	0	0
............................GGTAGAACTACCGGCTCTG............................................................................................................................................................................................................	19	3	4	0.25	1	1	0	0
........................................................................ATACGTCGGCTAGGGGAAGCAC.............................................................................................................................................................	22	2	5	0.20	1	0	1	0
.............................................................................TCGGCTAGGGGAAGCAGCGACGCCAAC...................................................................................................................................................	27	1	5	0.20	1	1	0	0
...................................................................................AGGGGAAGCAGCGACGCCAACGGAC...............................................................................................................................................	25	0	5	0.20	1	1	0	0
..................................................................................TAGGGGAAGCAGCGACGCCAACGGA................................................................................................................................................	25	0	5	0.20	1	1	0	0
..................................................................................TAGGGGAAGCAGCGACGCCAACGG.................................................................................................................................................	24	0	5	0.20	1	1	0	0
..................................................................................TAGGGGAAGCAGCGACGCCAACGGACC..............................................................................................................................................	27	0	5	0.20	1	1	0	0
.................................................................................ATAGGGGAAGCAGCGACGCCAACGGAC...............................................................................................................................................	27	1	5	0.20	1	1	0	0
............................GGTAGAACTACCGGCTCT.............................................................................................................................................................................................................	18	3	17	0.18	3	3	0	0
.......................................................................................................................................................................................................TTAATCCTCTTTCCACCCCGAT..............................	22	0	6	0.17	1	1	0	0
.......................................................................................................................................................................................................TTAATCCTCTTTCCACCCCG................................	20	0	6	0.17	1	1	0	0
.............................................................................TCGGCTAGGGGAAGCAGCGAC.........................................................................................................................................................	21	1	6	0.17	1	0	1	0
....................................................................................................................................................................................................CCCTTAATCCTCTTTCCACCC..................................	21	0	8	0.13	1	1	0	0
...............................AGAACTACCGGCTCTGAC..........................................................................................................................................................................................................	18	3	20	0.05	1	1	0	0

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGCATCCATTACGCCAGGACATTTGTCGGGCAGAGCTACCGGATCTGTCGGTATTGCACCGGACCACCAACCATACGACGGCTAGGGGAAGCAGCGACGCCAACGGACCCGCAAAACGCCCACTCGGCAACAAAGGGGGGGGGGGGGGGTGTGATGAATCACAAATTTACCCAACCCCGACCCCGAGAAAACTGTCCCCTTAATCCTCTTTCCACCCCGATCTCAATAAATAGCAAAGATTAAGAAAATAT
**********************************************************************************.................((.................(((.(((.........))))))..))***********************************************************************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V041
embryo

..................................................................................TAGGGGAAGCAGCGACGCCAACGGAC...............................................................................................................................................

1.00

...........................................................................................................................TCGGCAACAAAGGGGGGGGGG...........................................................................................................

0.50

...................................................................................AGGGGAAGCAGCGACGCCAACGG.................................................................................................................................................

0.40

...................................................................................................................................AAAGGGTTGGGGGGGTGGTGTG..................................................................................................

0.33

............................GGTAGAACTACCGGCTCTG............................................................................................................................................................................................................

0.25

........................................................................ATACGTCGGCTAGGGGAAGCAC.............................................................................................................................................................

0.20

.............................................................................TCGGCTAGGGGAAGCAGCGACGCCAAC...................................................................................................................................................

0.20

...................................................................................AGGGGAAGCAGCGACGCCAACGGAC...............................................................................................................................................

0.20

..................................................................................TAGGGGAAGCAGCGACGCCAACGGA................................................................................................................................................

0.20

..................................................................................TAGGGGAAGCAGCGACGCCAACGG.................................................................................................................................................

0.20

..................................................................................TAGGGGAAGCAGCGACGCCAACGGACC..............................................................................................................................................

0.20

.................................................................................ATAGGGGAAGCAGCGACGCCAACGGAC...............................................................................................................................................

0.20

............................GGTAGAACTACCGGCTCT.............................................................................................................................................................................................................

0.18

.......................................................................................................................................................................................................TTAATCCTCTTTCCACCCCGAT..............................

0.17

.............................................................................TCGGCTAGGGGAAGCAGCGAC.........................................................................................................................................................

0.17

....................................................................................................................................................................................................CCCTTAATCCTCTTTCCACCC..................................

0.13

...............................AGAACTACCGGCTCTGAC..........................................................................................................................................................................................................

0.05

GCGTAGGTAATGCGGTCCTGTAAACAGCCCGTCTCGATGGCCTAGACAGCCATAACGTGGCCTGGTGGTTGGTATGCTGCCGATCCCCTTCGTCGCTGCGGTTGCCTGGGCGTTTTGCGGGTGAGCCGTTGTTTCCCCCCCCCCCCCCCACACTACTTAGTGTTTAAATGGGTTGGGGCTGGGGCTCTTTTGACAGGGGAATTAGGAGAAAGGTGGGGCTAGAGTTATTTATCGTTTCTAATTCTTTTATA *********************************************************************************************************.................((.................(((.(((.........))))))..))********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V110 male body	V041 embryo
.................................................................................GATCCCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................	26	0	5	2.80	14	12	2	0	0
....................................................................................CCCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................	23	0	5	2.40	12	6	5	0	1
................................................................................CGATCCCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................	27	0	5	2.00	10	5	4	1	0
..................................................................................ATCCCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................	25	0	5	2.00	10	8	0	1	1
.....................................................................................CCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................	22	0	5	1.80	9	3	3	2	1
..ATAGGTAACGCGGTCCTGG......................................................................................................................................................................................................................................	19	3	11	1.73	19	7	8	4	0
......................................................................................CCTTCGTCGCTGCGGTTGCCT................................................................................................................................................	21	0	5	1.40	7	1	4	0	2
...................................................................................TCCCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................	24	0	5	1.20	6	5	1	0	0
...............................................................................CCGATCCCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................	28	0	5	1.20	6	2	3	1	0
...TAGGTAACGCGGTCCTGG......................................................................................................................................................................................................................................	18	2	7	0.71	5	1	3	1	0
...................................................................................CCCCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................	24	1	5	0.40	2	0	2	0	0
..ATAGGTAACGCGGTCCTG.......................................................................................................................................................................................................................................	18	2	5	0.40	2	2	0	0	0
......................................................ACCTGGCTTGGTGGTTGGAA.................................................................................................................................................................................	20	3	5	0.40	2	2	0	0	0
................................................................GTGGTTGGTATGCTGCCGATCCCCT..................................................................................................................................................................	25	0	3	0.33	1	1	0	0	0
.....GGTAATGCGGTCCTGTAAAC..................................................................................................................................................................................................................................	20	0	3	0.33	1	1	0	0	0
....................................................................................CCCCTTCGTCGCTGCGGTTGACT................................................................................................................................................	23	1	6	0.33	2	0	2	0	0
.....GGTAATGCGGTCCTGTAAACGCCT..............................................................................................................................................................................................................................	24	3	4	0.25	1	0	1	0	0
............................................................................CAGCCGATCCCCTTCGTCGCTGCGGT.....................................................................................................................................................	26	1	4	0.25	1	1	0	0	0
.....................................................................................CCCTTCGTCCCTGCGGTAGCCT................................................................................................................................................	22	2	5	0.20	1	0	1	0	0
....AGGTAATGCGGTCCTGTA.....................................................................................................................................................................................................................................	18	0	5	0.20	1	1	0	0	0
.............................................................................................CGCTGCGGTTGCCTGGGCGTTTT.......................................................................................................................................	23	0	5	0.20	1	0	1	0	0
..............................................................................................GCTGCGGTTGCCTGGGCGTTTTG......................................................................................................................................	23	0	5	0.20	1	1	0	0	0
.....................................................................................CCCTTCGTCGCTGCGGTTGCCTG...............................................................................................................................................	23	0	5	0.20	1	1	0	0	0
.......................................................................................CTTCGTCGCTGCGGTTGCCTGGGCGT..........................................................................................................................................	26	0	5	0.20	1	1	0	0	0
................................................................................CGCTCCACTTCGTCGCTGCGGTAGCCT................................................................................................................................................	27	3	5	0.20	1	0	0	0	1
..........................................................................................CGTCGCTGCGGTTGCCTGGGCGT..........................................................................................................................................	23	0	5	0.20	1	0	0	1	0
..............................................................................CCCGATCCCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................	29	1	5	0.20	1	1	0	0	0
..............................................................................GCCGATCCCCTTCGTCGCTGCGGTTGCC.................................................................................................................................................	28	0	5	0.20	1	1	0	0	0
...............................................................................CCGATCCCCTTCGTCGCTGCGGTTTC..................................................................................................................................................	26	1	5	0.20	1	0	1	0	0
..............................................................................................GCTGCGGTTGCCTGGGCGTTT........................................................................................................................................	21	0	5	0.20	1	1	0	0	0
.........................................................................................TCGTCGCTGCGGTTGCCTGGGCGT..........................................................................................................................................	24	0	5	0.20	1	0	0	1	0
..................................................................................ATCCCCTTCGTCGCTGCGGTTGC..................................................................................................................................................	23	0	5	0.20	1	1	0	0	0
................................................................................TGATCCCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................	27	1	5	0.20	1	0	1	0	0
......................................................................................................................................................................................................GAATTAGGAGAAAGGTGGGGCTAG.............................	24	0	6	0.17	1	1	0	0	0
..................................................................................CTCCCCTTCGTCGCTGCGGTTGACT................................................................................................................................................	25	2	6	0.17	1	0	1	0	0
....................................................................................................................................................................................................GGGAATTAGGAGAAAGGTGGGGCT...............................	24	0	6	0.17	1	1	0	0	0
........................................................................................................................................................................................................ATTAGGAGAAAGGTGGGGCTAGAGT..........................	25	0	7	0.14	1	0	0	1	0
......................................................ACCTGGCTTGGTGGTTGG...................................................................................................................................................................................	18	2	7	0.14	1	1	0	0	0
....................................................................................................................................................................................................GGGAATTAGGAGAAAGGT.....................................	18	0	8	0.13	1	1	0	0	0
............................................................................................................................................................................................................GGAGAAAGGTGGGGCTAGAGT..........................	21	0	9	0.11	1	1	0	0	0
..................................................................................................................................................................................GTGGGGCTCTGTTGACAG.......................................................	18	2	9	0.11	1	1	0	0	0
..........................................................................................................................................................................................................TAGGAGAAAGGTGGGGCTAGAGTT.........................	24	0	9	0.11	1	1	0	0	0
.CTTAGGTAACGCGGTCCTGG......................................................................................................................................................................................................................................	20	3	9	0.11	1	0	1	0	0
...................................................................................................................................................................................................................GGTGGGGCTAGAGTTATT......................	18	0	11	0.09	1	1	0	0	0
................................................................................................TGCGGTTGCCTGCCCGTTTC.......................................................................................................................................	20	3	15	0.07	1	1	0	0	0
......................................................ACCTGGCTTGGTGGTTGGA..................................................................................................................................................................................	19	3	15	0.07	1	0	0	1	0
.....................................................................................CCCTACCTCGCTGCGTTTGCCT................................................................................................................................................	22	3	20	0.05	1	0	1	0	0
.........................................................TGGCCTGGTCGTTGGAAC................................................................................................................................................................................	18	3	20	0.05	1	1	0	0	0
...........................................................................................................................................................................................TTTTGAGAGGGGATTTAGA.............................................	19	3	20	0.05	1	1	0	0	0

GCGTAGGTAATGCGGTCCTGTAAACAGCCCGTCTCGATGGCCTAGACAGCCATAACGTGGCCTGGTGGTTGGTATGCTGCCGATCCCCTTCGTCGCTGCGGTTGCCTGGGCGTTTTGCGGGTGAGCCGTTGTTTCCCCCCCCCCCCCCCACACTACTTAGTGTTTAAATGGGTTGGGGCTGGGGCTCTTTTGACAGGGGAATTAGGAGAAAGGTGGGGCTAGAGTTATTTATCGTTTCTAATTCTTTTATA
***********************************************************************************************************.................((.................(((.(((.........))))))..))**********************************************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V110
male body

V041
embryo

.................................................................................GATCCCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................

2.80

....................................................................................CCCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................

2.40

................................................................................CGATCCCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................

2.00

..................................................................................ATCCCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................

2.00

.....................................................................................CCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................

1.80

..ATAGGTAACGCGGTCCTGG......................................................................................................................................................................................................................................

1.73

......................................................................................CCTTCGTCGCTGCGGTTGCCT................................................................................................................................................

1.40

...................................................................................TCCCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................

1.20

...............................................................................CCGATCCCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................

1.20

...TAGGTAACGCGGTCCTGG......................................................................................................................................................................................................................................

0.71

...................................................................................CCCCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................

0.40

..ATAGGTAACGCGGTCCTG.......................................................................................................................................................................................................................................

0.40

......................................................ACCTGGCTTGGTGGTTGGAA.................................................................................................................................................................................

0.40

................................................................GTGGTTGGTATGCTGCCGATCCCCT..................................................................................................................................................................

0.33

.....GGTAATGCGGTCCTGTAAAC..................................................................................................................................................................................................................................

0.33

....................................................................................CCCCTTCGTCGCTGCGGTTGACT................................................................................................................................................

0.33

.....GGTAATGCGGTCCTGTAAACGCCT..............................................................................................................................................................................................................................

0.25

............................................................................CAGCCGATCCCCTTCGTCGCTGCGGT.....................................................................................................................................................

0.25

.....................................................................................CCCTTCGTCCCTGCGGTAGCCT................................................................................................................................................

0.20

....AGGTAATGCGGTCCTGTA.....................................................................................................................................................................................................................................

0.20

.............................................................................................CGCTGCGGTTGCCTGGGCGTTTT.......................................................................................................................................

0.20

..............................................................................................GCTGCGGTTGCCTGGGCGTTTTG......................................................................................................................................

0.20

.....................................................................................CCCTTCGTCGCTGCGGTTGCCTG...............................................................................................................................................

0.20

.......................................................................................CTTCGTCGCTGCGGTTGCCTGGGCGT..........................................................................................................................................

0.20

................................................................................CGCTCCACTTCGTCGCTGCGGTAGCCT................................................................................................................................................

0.20

..........................................................................................CGTCGCTGCGGTTGCCTGGGCGT..........................................................................................................................................

0.20

..............................................................................CCCGATCCCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................

0.20

..............................................................................GCCGATCCCCTTCGTCGCTGCGGTTGCC.................................................................................................................................................

0.20

...............................................................................CCGATCCCCTTCGTCGCTGCGGTTTC..................................................................................................................................................

0.20

..............................................................................................GCTGCGGTTGCCTGGGCGTTT........................................................................................................................................

0.20

.........................................................................................TCGTCGCTGCGGTTGCCTGGGCGT..........................................................................................................................................

0.20

..................................................................................ATCCCCTTCGTCGCTGCGGTTGC..................................................................................................................................................

0.20

................................................................................TGATCCCCTTCGTCGCTGCGGTTGCCT................................................................................................................................................

0.20

......................................................................................................................................................................................................GAATTAGGAGAAAGGTGGGGCTAG.............................

0.17

..................................................................................CTCCCCTTCGTCGCTGCGGTTGACT................................................................................................................................................

0.17

....................................................................................................................................................................................................GGGAATTAGGAGAAAGGTGGGGCT...............................

0.17

........................................................................................................................................................................................................ATTAGGAGAAAGGTGGGGCTAGAGT..........................

0.14

......................................................ACCTGGCTTGGTGGTTGG...................................................................................................................................................................................

0.14

....................................................................................................................................................................................................GGGAATTAGGAGAAAGGT.....................................

0.13

............................................................................................................................................................................................................GGAGAAAGGTGGGGCTAGAGT..........................

0.11

..................................................................................................................................................................................GTGGGGCTCTGTTGACAG.......................................................

0.11

..........................................................................................................................................................................................................TAGGAGAAAGGTGGGGCTAGAGTT.........................

0.11

.CTTAGGTAACGCGGTCCTGG......................................................................................................................................................................................................................................

0.11

...................................................................................................................................................................................................................GGTGGGGCTAGAGTTATT......................

0.09

................................................................................................TGCGGTTGCCTGCCCGTTTC.......................................................................................................................................

0.07

......................................................ACCTGGCTTGGTGGTTGGA..................................................................................................................................................................................

0.07

.....................................................................................CCCTACCTCGCTGCGTTTGCCT................................................................................................................................................

0.05

.........................................................TGGCCTGGTCGTTGGAAC................................................................................................................................................................................

0.05

...........................................................................................................................................................................................TTTTGAGAGGGGATTTAGA.............................................

0.05

Species	Coordinate	ID	Alignment
droMoj3	scaffold_5889:8047-8297 -	dmo_390	CGCATCCATTACGCCAGGACATTTGTCGGGCAGAGCTACCGGATCTGTCGGTATTGCACCGGACCACCAACCATACGACGGCTAGGGGAAGCAGCGACGCCAACGGACCCGCAAAACGCCCACTCGGCAACAAAGGGGGGGGGGGGGGGTGTGATGAATCACAAATTTACCCAACCCCGACCCCGAGAAAACTGTCCCCTTAATCCTCTTTCCACCCCGATCTCAATAAATAGCAAAGATTAAGAAAATAT

Species

Coordinate

Alignment

droMoj3

scaffold_5889:8047-8297 -

dmo_390

CGCATCCATTACGCCAGGACATTTGTCGGGCAGAGCTACCGGATCTGTCGGTATTGCACCGGACCACCAACCATACGACGGCTAGGGGAAGCAGCGACGCCAACGGACCCGCAAAACGCCCACTCGGCAACAAAGGGGGGGGGGGGGGGTGTGATGAATCACAAATTTACCCAACCCCGACCCCGAGAAAACTGTCCCCTTAATCCTCTTTCCACCCCGATCTCAATAAATAGCAAAGATTAAGAAAATAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

CGCATCCATTACGCCAGGACATTTGTCGGGCAGAGCTACCGGATCTGTCGGTATTGCACCGGACCACCAACCATACGACGGCTAGGGGAAGCAGCGACGCCAACGGACCCGCAAAACGCCCACTCGGCAACAAAGGGGGGGGGGGGGGGTGTGATGAATCACAAATTTACCCAACCCCGACCCCGAGAAAACTGTCCCCTTAATCCTCTTTCCACCCCGATCTCAATAAATAGCAAAGATTAAGAAAATAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................TAGGGGAAGCAGCGACGCCAACGGAC...............................................................................................................................................	26	5	1.00	5	4	0	0	0	1	0
...........................................................................................................................TCGGCAACAAAGGGGGGGGGG...........................................................................................................	21	2	0.50	1	1	0	0	0	0	0
...................................................................................AGGGGAAGCAGCGACGCCAACGG.................................................................................................................................................	23	5	0.40	2	1	1	0	0	0	0
...................................................................................AGGGGAAGCAGCGACGCCAACGGAC...............................................................................................................................................	25	5	0.20	1	1	0	0	0	0	0
..................................................................................TAGGGGAAGCAGCGACGCCAACGGA................................................................................................................................................	25	5	0.20	1	1	0	0	0	0	0
..................................................................................TAGGGGAAGCAGCGACGCCAACGG.................................................................................................................................................	24	5	0.20	1	1	0	0	0	0	0
..................................................................................TAGGGGAAGCAGCGACGCCAACGGACC..............................................................................................................................................	27	5	0.20	1	1	0	0	0	0	0
.......................................................................................................................................................................................................TTAATCCTCTTTCCACCCCGAT..............................	22	6	0.17	1	1	0	0	0	0	0
.......................................................................................................................................................................................................TTAATCCTCTTTCCACCCCG................................	20	6	0.17	1	1	0	0	0	0	0
....................................................................................................................................................................................................CCCTTAATCCTCTTTCCACCC..................................	21	8	0.13	1	1	0	0	0	0	0

-10.7	-10.7	-10.7	-10.7

dmo_390

scaffold_5889:8097-8247 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads