dmo_382

CDS [Dmoj\GI11222-cds]; CDS [Dmoj\GI11222-cds]; exon [dmoj_GLEANR_11134:1]; exon [dmoj_GLEANR_11134:2]; intron [Dmoj\GI11222-in]

##################################################--------------------------------------------------------------------------------------------################################################## TAATTGTGATCTCCGATTCGGAGGAGGGAGAAACACCGGAACCTCCGCGGGTAAGTGCCAGCTACGCTGGAAAGGTGGTGGGGGTCGCTTGGAGCATCGCGCCGAGGTTGTCATAACATGGAGCGAACCCCTCACCACGAAGCCCGCGGGGTTCATATTAGAAGAAGTGTCGCCTCCAGAGACGCCACCACA *********************************************************************************........(((..((((.(((..((((...)))).))).))))....)))*********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V049 head	M060 embryo	V056 head	V110 male body	V041 embryo
...................................................................................................................ACATGGAGCGAACCCCTC...........................................................	18	0	1	1.00	1	1	0	0	0	0	0
........................................................................................................AGGCTGTCGTAACATGGACCG...................................................................	21	3	1	1.00	1	0	1	0	0	0	0
...................................................................................GTCGCTTGGAGCATCGCGCCG........................................................................................	21	0	12	0.67	8	8	0	0	0	0	0
........................................................................AGGGGGTGGGGTTCGCTTGAAG..................................................................................................	22	3	2	0.50	1	0	0	0	1	0	0
................................................................................................................................................................GAAGAAGTGTCGCCTCCAGAGACG........	24	0	4	0.50	2	2	0	0	0	0	0
...................................................................................GTCGCTTGGAGCATCGCGCCGAG......................................................................................	23	0	12	0.42	5	4	0	0	0	1	0
...................................................................................GTCGCTTGGAGCATCGCGCCGA.......................................................................................	22	0	12	0.33	4	3	1	0	0	0	0
...........TCCGATTCGGAGGAGGGA...................................................................................................................................................................	18	0	10	0.30	3	3	0	0	0	0	0
...................................................................................GTCGCTTGGAGCATCGCGCCGAGG.....................................................................................	24	0	7	0.29	2	1	0	1	0	0	0
................................................................................................................................................................GAAGAAGTGTCGCCTCCAGAGACGC.......	25	0	4	0.25	1	1	0	0	0	0	0
................................................................................................................................................................GAAGAAGTGTCGCCTCCAGAGA..........	22	0	4	0.25	1	1	0	0	0	0	0
...................................................................................GTCGCTTGGAGCATCGCGCCGAGGTTC..................................................................................	27	1	7	0.14	1	1	0	0	0	0	0
.............................GAAACGCCGGAACCTCCGCGGGT............................................................................................................................................	23	1	8	0.13	1	0	0	1	0	0	0
...........................................................................................GGGCATCGCGCCGAGGTTGTC................................................................................	21	1	9	0.11	1	0	0	1	0	0	0
...................GCAGGAGGGGGAAACACC...........................................................................................................................................................	18	2	20	0.10	2	0	0	2	0	0	0
...............................................................................GGGGGTCGCTTGGAGCATCGCGC..........................................................................................	23	0	11	0.09	1	1	0	0	0	0	0
...................................................................................GTCGCTTGGAGCATCGCGCCGG.......................................................................................	22	1	12	0.08	1	1	0	0	0	0	0
...................................................................................GTCGCTTGGAGCATCGCGC..........................................................................................	19	0	12	0.08	1	1	0	0	0	0	0
...................................................................................GTCGCTTGGAGCATCGCG...........................................................................................	18	0	12	0.08	1	1	0	0	0	0	0
....................................................................................TCGCTTGGAGCATCGCGCCG........................................................................................	20	0	12	0.08	1	1	0	0	0	0	0
...................................................................................GTCGCTTGGAGCATCGCGCC.........................................................................................	20	0	12	0.08	1	1	0	0	0	0	0
....................................................................................TCGCTTGGAGCATCGCGCCGAG......................................................................................	22	0	12	0.08	1	1	0	0	0	0	0
.......................................................TGCCAGCTACGCTGGAAAGGTGGTG................................................................................................................	25	0	15	0.07	1	1	0	0	0	0	0
..........................................................CAGCTACGCTGGAAAGGTGGT.................................................................................................................	21	0	15	0.07	1	0	0	0	0	0	1
......................................................................................................................TGGAGCGAACCCCTCACCACGAAGCCC...............................................	27	0	15	0.07	1	0	0	1	0	0	0
.......................................................TGCCAGCTACGCTGGAAAGGTGGTGG...............................................................................................................	26	0	15	0.07	1	1	0	0	0	0	0
..........................................................CAGCTACGCTGGAAAGGGGGT.................................................................................................................	21	1	15	0.07	1	0	0	1	0	0	0
...........................................TCCGCCGGTAAGTGCCAGCTACGCT............................................................................................................................	25	1	16	0.06	1	1	0	0	0	0	0
...................................................TAAGTGCCAGCTACGCTGGAAAGGTGG..................................................................................................................	27	0	16	0.06	1	1	0	0	0	0	0
......................................................GTGCCAGCTACGCTGGAAAGGTGG..................................................................................................................	24	0	16	0.06	1	1	0	0	0	0	0
...................................................................................................................................TCACGAGGGAGCCCGCGGG..........................................	19	3	17	0.06	1	0	1	0	0	0	0
........................................................................AGATTGTGGGGGTAGCTT......................................................................................................	18	3	20	0.05	1	0	0	0	1	0	0
.............................................................CTACACTGGAGAGGTGGTGT...............................................................................................................	20	3	20	0.05	1	0	0	0	1	0	0

##################################################--------------------------------------------------------------------------------------------##################################################
TAATTGTGATCTCCGATTCGGAGGAGGGAGAAACACCGGAACCTCCGCGGGTAAGTGCCAGCTACGCTGGAAAGGTGGTGGGGGTCGCTTGGAGCATCGCGCCGAGGTTGTCATAACATGGAGCGAACCCCTCACCACGAAGCCCGCGGGGTTCATATTAGAAGAAGTGTCGCCTCCAGAGACGCCACCACA
***********************************************************************************........(((..((((.(((..((((...)))).))).))))....)))***********************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

V049
head

M060
embryo

V056
head

V110
male body

V041
embryo

...................................................................................................................ACATGGAGCGAACCCCTC...........................................................

1.00

........................................................................................................AGGCTGTCGTAACATGGACCG...................................................................

1.00

...................................................................................GTCGCTTGGAGCATCGCGCCG........................................................................................

0.67

........................................................................AGGGGGTGGGGTTCGCTTGAAG..................................................................................................

0.50

................................................................................................................................................................GAAGAAGTGTCGCCTCCAGAGACG........

0.50

...................................................................................GTCGCTTGGAGCATCGCGCCGAG......................................................................................

0.42

...................................................................................GTCGCTTGGAGCATCGCGCCGA.......................................................................................

0.33

...........TCCGATTCGGAGGAGGGA...................................................................................................................................................................

0.30

...................................................................................GTCGCTTGGAGCATCGCGCCGAGG.....................................................................................

0.29

................................................................................................................................................................GAAGAAGTGTCGCCTCCAGAGACGC.......

0.25

................................................................................................................................................................GAAGAAGTGTCGCCTCCAGAGA..........

0.25

...................................................................................GTCGCTTGGAGCATCGCGCCGAGGTTC..................................................................................

0.14

.............................GAAACGCCGGAACCTCCGCGGGT............................................................................................................................................

0.13

...........................................................................................GGGCATCGCGCCGAGGTTGTC................................................................................

0.11

...................GCAGGAGGGGGAAACACC...........................................................................................................................................................

0.10

...............................................................................GGGGGTCGCTTGGAGCATCGCGC..........................................................................................

0.09

...................................................................................GTCGCTTGGAGCATCGCGCCGG.......................................................................................

0.08

...................................................................................GTCGCTTGGAGCATCGCGC..........................................................................................

0.08

...................................................................................GTCGCTTGGAGCATCGCG...........................................................................................

0.08

....................................................................................TCGCTTGGAGCATCGCGCCG........................................................................................

0.08

...................................................................................GTCGCTTGGAGCATCGCGCC.........................................................................................

0.08

....................................................................................TCGCTTGGAGCATCGCGCCGAG......................................................................................

0.08

.......................................................TGCCAGCTACGCTGGAAAGGTGGTG................................................................................................................

0.07

..........................................................CAGCTACGCTGGAAAGGTGGT.................................................................................................................

0.07

......................................................................................................................TGGAGCGAACCCCTCACCACGAAGCCC...............................................

0.07

.......................................................TGCCAGCTACGCTGGAAAGGTGGTGG...............................................................................................................

0.07

..........................................................CAGCTACGCTGGAAAGGGGGT.................................................................................................................

0.07

...........................................TCCGCCGGTAAGTGCCAGCTACGCT............................................................................................................................

0.06

...................................................TAAGTGCCAGCTACGCTGGAAAGGTGG..................................................................................................................

0.06

......................................................GTGCCAGCTACGCTGGAAAGGTGG..................................................................................................................

0.06

...................................................................................................................................TCACGAGGGAGCCCGCGGG..........................................

0.06

........................................................................AGATTGTGGGGGTAGCTT......................................................................................................

0.05

.............................................................CTACACTGGAGAGGTGGTGT...............................................................................................................

0.05

ATTAACACTAGAGGCTAAGCCTCCTCCCTCTTTGTGGCCTTGGAGGCGCCCATTCACGGTCGATGCGACCTTTCCACCACCCCCAGCGAACCTCGTAGCGCGGCTCCAACAGTATTGTACCTCGCTTGGGGAGTGGTGCTTCGGGCGCCCCAAGTATAATCTTCTTCACAGCGGAGGTCTCTGCGGTGGTGT *********************************************************........(((..((((.(((..((((...)))).))).))))....)))*********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V041 embryo	V110 male body
..............................................................................................................................................GGGCGCCCCAAGTATAATCTTCTTCACA......................	28	0	2	2.00	4	4	0	0	0
.................................................................................................................................................CGCCCCAAGTATAATCTTCTTCACA......................	25	0	2	2.00	4	4	0	0	0
.............................................................................................................................................CGGGCGCCCCAAGTATAATCTTCTTCACA......................	29	0	2	1.50	3	2	1	0	0
........................................................................................................................CTCGCTTGGGGAGTGGTGCTT...................................................	21	0	15	0.73	11	7	1	1	2
.............................................................................................................................................CGGGCGCCCCAAGTATAATCTTCTT..........................	25	0	3	0.67	2	1	0	1	0
...............................................................................................................................................GGCGCCCCAAGTATAATCTTCTTCAGA......................	27	1	3	0.67	2	0	2	0	0
...............................................................................................................................................GGCGCCCCAAGTATAATC...............................	18	0	3	0.67	2	2	0	0	0
....................................................................................................................................................CCCAAGTATAATCTTCTTCACA......................	22	0	2	0.50	1	0	1	0	0
...............................................................................................................................................GGCGCCCCAAGTATAATCTTCTTCACA......................	27	0	2	0.50	1	1	0	0	0
.......................................TTGGAGGCGCCCATTCACGGTCGAT................................................................................................................................	25	0	15	0.40	6	3	3	0	0
........................................................................................................................CTCGCTTGGGGAGTGGTGCT....................................................	20	0	15	0.33	5	5	0	0	0
...............................................................................................................................................GGCGCCCCAAGTATAATCTTCTTC.........................	24	0	3	0.33	1	1	0	0	0
.............................................................................................................................................CGGGCGCCCCAAGTATAATCTTCTTCAGA......................	29	1	3	0.33	1	0	1	0	0
.................................................................................................................................................CCCCCCAAGTATAATCTTCTTCAGA......................	25	2	3	0.33	1	0	1	0	0
...............................................................................................................................................GGCGCCCCAAGTATAATCTTCTT..........................	23	0	3	0.33	1	0	0	1	0
.............................................................................................................................................CGGGCGCCCCAAGTATAATCTTCTTCATA......................	29	1	3	0.33	1	0	1	0	0
..............................................................................................................................................GGGCGCCCCAAGTATAATCTT.............................	21	0	3	0.33	1	1	0	0	0
........................................................................................................................CTCGCTTGGGGAGTGGTGC.....................................................	19	0	15	0.27	4	3	0	0	1
.............................................................................................CGTAGCGCGGCTCCAACAGTAT.............................................................................	22	0	9	0.22	2	2	0	0	0
..........................................................................................................................CGCTTGGGGAGTGGTGCTT...................................................	19	0	15	0.20	3	2	1	0	0
.........................................GGAGGCGCCCATTCACGGTCGAT................................................................................................................................	23	0	15	0.20	3	3	0	0	0
......................................CTTGGAGGCGCCCATTCACGGTCGAT................................................................................................................................	26	0	15	0.20	3	2	1	0	0
....................................................................................AGCGAACCTCGTAGCGCGGCTCCAACAGT...............................................................................	29	0	7	0.14	1	1	0	0	0
............GGCTAAGCCTCCTCCCTCTTTGTGG...........................................................................................................................................................	25	0	7	0.14	1	1	0	0	0
................AAGCCTCCTCCCTCTTTGTG............................................................................................................................................................	20	0	7	0.14	1	1	0	0	0
...................................................................................CAGCGAACCTCGTAGCGCGGCTCCAACAG................................................................................	29	0	7	0.14	1	1	0	0	0
......................................TTTGGAGGCGCCCATTCACGGTCGAT................................................................................................................................	26	1	15	0.13	2	2	0	0	0
.......................................TTGGAGGCGCCCATTCACGGT....................................................................................................................................	21	0	15	0.13	2	1	1	0	0
......................................TTTGGAGGCGCCCATTCACGGT....................................................................................................................................	22	1	15	0.13	2	2	0	0	0
.......................................................................................GAACCTCGTAGCGCGGCTCCAACAGT...............................................................................	26	0	8	0.13	1	1	0	0	0
.............................................................................................CGTAGCGCGGCTCCAACAGTATTGCAC........................................................................	27	1	9	0.11	1	0	1	0	0
............................................................................................TCGTAGCGCGGCTCCAACAGT...............................................................................	21	0	9	0.11	1	0	1	0	0
...............................................................................................TAGCGCGGCTCCAACAGTATTG...........................................................................	22	0	9	0.11	1	1	0	0	0
.............................................................................................CGTAGCGCGGCTCCAACAGTATTG...........................................................................	24	0	9	0.11	1	1	0	0	0
.............................................................................................................................................CCGGCGCCCCAAGTATAA.................................	18	1	10	0.10	1	0	1	0	0
.........AGAGGCTAAGCCTCCTCCCTCTTT...............................................................................................................................................................	24	0	10	0.10	1	1	0	0	0
.......CTAGAGGCTAAGCCTCCTCCCTCTTT...............................................................................................................................................................	26	0	10	0.10	1	1	0	0	0
..............CTAAGCCTCCTCCCTCTT................................................................................................................................................................	18	0	10	0.10	1	1	0	0	0
............GGCTAAGCCTCCTCCCTCT.................................................................................................................................................................	19	0	10	0.10	1	1	0	0	0
...............................................................................................................................GGGGAGTGGTGCTTCGGGCGCCCCA........................................	25	0	12	0.08	1	1	0	0	0
........................................TGGAGGCGCCCATTCACGGTCGAT................................................................................................................................	24	0	15	0.07	1	1	0	0	0
.......................................TTGGAGGCGCCCATTCACGGTCGTT................................................................................................................................	25	1	15	0.07	1	0	1	0	0
.......................................TTGGAGGCGCCCATTCACGGTCGATGC..............................................................................................................................	27	0	15	0.07	1	1	0	0	0
.........................................GGAGGCGCCCATTCACGGTCGATGC..............................................................................................................................	25	0	15	0.07	1	1	0	0	0
.......................................TTGGAGGCGCCCATTCACGGTCGATGCG.............................................................................................................................	28	0	15	0.07	1	1	0	0	0
......................................GTTGGAGGCGCCCATTCACGGT....................................................................................................................................	22	1	15	0.07	1	1	0	0	0
.......................................TTGGAGGCGCCCATTCACGGTCGA.................................................................................................................................	24	0	15	0.07	1	1	0	0	0
......................................CTTGGAGGCGCCCATTCACGG.....................................................................................................................................	21	0	15	0.07	1	1	0	0	0
............................................GGCGCCCATTCACGGTCGATGCGACC..........................................................................................................................	26	0	15	0.07	1	1	0	0	0
........................................CGGAGGCGCCCATTCACGGTCGAT................................................................................................................................	24	1	15	0.07	1	0	1	0	0
........................................TGGAGGCGCCCATTCACGGTCGATGC..............................................................................................................................	26	0	15	0.07	1	1	0	0	0
.......................................TTGGAGGCGCCCATTCACGGTC...................................................................................................................................	22	0	15	0.07	1	1	0	0	0
.......................................TTGGAGGCGCCCATTCACGG.....................................................................................................................................	20	0	15	0.07	1	1	0	0	0
.........................................GGAGGCGCCCAATCACGGTCGAT................................................................................................................................	23	1	15	0.07	1	1	0	0	0
..........................................................GTCGATGCGACCTTTCCACCA.................................................................................................................	21	0	15	0.07	1	0	0	1	0
............................................GGCGCCCATTCACGGTCGATGCGACCT.........................................................................................................................	27	0	15	0.07	1	1	0	0	0
.........................................GGAGGCGCCCATTCACGGTCGA.................................................................................................................................	22	0	15	0.07	1	1	0	0	0
................................................CCCATTCACGGTCGATGCGACCTGT.......................................................................................................................	25	1	16	0.06	1	0	1	0	0
...........................................AGGCGCCCATTCACGGTCGATGCGAC...........................................................................................................................	26	0	16	0.06	1	0	0	1	0
......................................TTTTGAGGCGCCCATTCACGGTCGAT................................................................................................................................	26	2	16	0.06	1	1	0	0	0
..............................................TGCCCATTCACGGTCGATGCGACCTTT.......................................................................................................................	27	1	16	0.06	1	1	0	0	0
............................................GGCGCCCATTCACGGTCGATT...............................................................................................................................	21	1	16	0.06	1	1	0	0	0
.......................................................................................................................TTTCGCTTGGGGAGTGGTGCTT...................................................	22	2	16	0.06	1	1	0	0	0
.........................................TGAGGCGCCCATTCACGGTCGAT................................................................................................................................	23	1	16	0.06	1	1	0	0	0
..............................................CGCCCATTCACGGTCGATGCGACCT.........................................................................................................................	25	0	16	0.06	1	0	1	0	0
.........................................................................................................................AAACTTGGGGAGTGGTGCTT...................................................	20	3	17	0.06	1	1	0	0	0
................................................................................CTACAGCGAACCTCGTATC.............................................................................................	19	3	20	0.05	1	0	1	0	0
.........................................................GGTCGAGGAGACCTGTCCA....................................................................................................................	19	3	20	0.05	1	0	0	0	1
......................................................CACGGTCGATGCGACCTTTCCA....................................................................................................................	22	0	20	0.05	1	0	1	0	0

ATTAACACTAGAGGCTAAGCCTCCTCCCTCTTTGTGGCCTTGGAGGCGCCCATTCACGGTCGATGCGACCTTTCCACCACCCCCAGCGAACCTCGTAGCGCGGCTCCAACAGTATTGTACCTCGCTTGGGGAGTGGTGCTTCGGGCGCCCCAAGTATAATCTTCTTCACAGCGGAGGTCTCTGCGGTGGTGT
***********************************************************........(((..((((.(((..((((...)))).))).))))....)))***********************************************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V041
embryo

V110
male body

..............................................................................................................................................GGGCGCCCCAAGTATAATCTTCTTCACA......................

2.00

.................................................................................................................................................CGCCCCAAGTATAATCTTCTTCACA......................

2.00

.............................................................................................................................................CGGGCGCCCCAAGTATAATCTTCTTCACA......................

1.50

........................................................................................................................CTCGCTTGGGGAGTGGTGCTT...................................................

0.73

.............................................................................................................................................CGGGCGCCCCAAGTATAATCTTCTT..........................

0.67

...............................................................................................................................................GGCGCCCCAAGTATAATCTTCTTCAGA......................

0.67

...............................................................................................................................................GGCGCCCCAAGTATAATC...............................

0.67

....................................................................................................................................................CCCAAGTATAATCTTCTTCACA......................

0.50

...............................................................................................................................................GGCGCCCCAAGTATAATCTTCTTCACA......................

0.50

.......................................TTGGAGGCGCCCATTCACGGTCGAT................................................................................................................................

0.40

........................................................................................................................CTCGCTTGGGGAGTGGTGCT....................................................

0.33

...............................................................................................................................................GGCGCCCCAAGTATAATCTTCTTC.........................

0.33

.............................................................................................................................................CGGGCGCCCCAAGTATAATCTTCTTCAGA......................

0.33

.................................................................................................................................................CCCCCCAAGTATAATCTTCTTCAGA......................

0.33

...............................................................................................................................................GGCGCCCCAAGTATAATCTTCTT..........................

0.33

.............................................................................................................................................CGGGCGCCCCAAGTATAATCTTCTTCATA......................

0.33

..............................................................................................................................................GGGCGCCCCAAGTATAATCTT.............................

0.33

........................................................................................................................CTCGCTTGGGGAGTGGTGC.....................................................

0.27

.............................................................................................CGTAGCGCGGCTCCAACAGTAT.............................................................................

0.22

..........................................................................................................................CGCTTGGGGAGTGGTGCTT...................................................

0.20

.........................................GGAGGCGCCCATTCACGGTCGAT................................................................................................................................

0.20

......................................CTTGGAGGCGCCCATTCACGGTCGAT................................................................................................................................

0.20

....................................................................................AGCGAACCTCGTAGCGCGGCTCCAACAGT...............................................................................

0.14

............GGCTAAGCCTCCTCCCTCTTTGTGG...........................................................................................................................................................

0.14

................AAGCCTCCTCCCTCTTTGTG............................................................................................................................................................

0.14

...................................................................................CAGCGAACCTCGTAGCGCGGCTCCAACAG................................................................................

0.14

......................................TTTGGAGGCGCCCATTCACGGTCGAT................................................................................................................................

0.13

.......................................TTGGAGGCGCCCATTCACGGT....................................................................................................................................

0.13

......................................TTTGGAGGCGCCCATTCACGGT....................................................................................................................................

0.13

.......................................................................................GAACCTCGTAGCGCGGCTCCAACAGT...............................................................................

0.13

.............................................................................................CGTAGCGCGGCTCCAACAGTATTGCAC........................................................................

0.11

............................................................................................TCGTAGCGCGGCTCCAACAGT...............................................................................

0.11

...............................................................................................TAGCGCGGCTCCAACAGTATTG...........................................................................

0.11

.............................................................................................CGTAGCGCGGCTCCAACAGTATTG...........................................................................

0.11

.............................................................................................................................................CCGGCGCCCCAAGTATAA.................................

0.10

.........AGAGGCTAAGCCTCCTCCCTCTTT...............................................................................................................................................................

0.10

.......CTAGAGGCTAAGCCTCCTCCCTCTTT...............................................................................................................................................................

0.10

..............CTAAGCCTCCTCCCTCTT................................................................................................................................................................

0.10

............GGCTAAGCCTCCTCCCTCT.................................................................................................................................................................

0.10

...............................................................................................................................GGGGAGTGGTGCTTCGGGCGCCCCA........................................

0.08

........................................TGGAGGCGCCCATTCACGGTCGAT................................................................................................................................

0.07

.......................................TTGGAGGCGCCCATTCACGGTCGTT................................................................................................................................

0.07

.......................................TTGGAGGCGCCCATTCACGGTCGATGC..............................................................................................................................

0.07

.........................................GGAGGCGCCCATTCACGGTCGATGC..............................................................................................................................

0.07

.......................................TTGGAGGCGCCCATTCACGGTCGATGCG.............................................................................................................................

0.07

......................................GTTGGAGGCGCCCATTCACGGT....................................................................................................................................

0.07

.......................................TTGGAGGCGCCCATTCACGGTCGA.................................................................................................................................

0.07

......................................CTTGGAGGCGCCCATTCACGG.....................................................................................................................................

0.07

............................................GGCGCCCATTCACGGTCGATGCGACC..........................................................................................................................

0.07

........................................CGGAGGCGCCCATTCACGGTCGAT................................................................................................................................

0.07

........................................TGGAGGCGCCCATTCACGGTCGATGC..............................................................................................................................

0.07

.......................................TTGGAGGCGCCCATTCACGGTC...................................................................................................................................

0.07

.......................................TTGGAGGCGCCCATTCACGG.....................................................................................................................................

0.07

.........................................GGAGGCGCCCAATCACGGTCGAT................................................................................................................................

0.07

..........................................................GTCGATGCGACCTTTCCACCA.................................................................................................................

0.07

............................................GGCGCCCATTCACGGTCGATGCGACCT.........................................................................................................................

0.07

.........................................GGAGGCGCCCATTCACGGTCGA.................................................................................................................................

0.07

................................................CCCATTCACGGTCGATGCGACCTGT.......................................................................................................................

0.06

...........................................AGGCGCCCATTCACGGTCGATGCGAC...........................................................................................................................

0.06

......................................TTTTGAGGCGCCCATTCACGGTCGAT................................................................................................................................

0.06

..............................................TGCCCATTCACGGTCGATGCGACCTTT.......................................................................................................................

0.06

............................................GGCGCCCATTCACGGTCGATT...............................................................................................................................

0.06

.......................................................................................................................TTTCGCTTGGGGAGTGGTGCTT...................................................

0.06

.........................................TGAGGCGCCCATTCACGGTCGAT................................................................................................................................

0.06

..............................................CGCCCATTCACGGTCGATGCGACCT.........................................................................................................................

0.06

.........................................................................................................................AAACTTGGGGAGTGGTGCTT...................................................

0.06

................................................................................CTACAGCGAACCTCGTATC.............................................................................................

0.05

.........................................................GGTCGAGGAGACCTGTCCA....................................................................................................................

0.05

......................................................CACGGTCGATGCGACCTTTCCA....................................................................................................................

0.05

Species	Coordinate	ID	Alignment
droMoj3	scaffold_5281:4794-4985 +	dmo_382	TAATTGTGATCTCCGATTCGGAGGAGGGAGAAACACCGGAACCTCCGCGGGTAAGTGCCAGCTACGCTGGAAAGGTGGTGGGGGTCGCTTGGAGCATCGCGCCGAGGTTGTCATAACATGGAGCGAACCCCTCACCACGAAGCCCGCGGGGTTCATATTAGAAGAAGTGTCGCCTCCAGAGACGCCACCACA

Species

Coordinate

Alignment

droMoj3

scaffold_5281:4794-4985 +

dmo_382

TAATTGTGATCTCCGATTCGGAGGAGGGAGAAACACCGGAACCTCCGCGGGTAAGTGCCAGCTACGCTGGAAAGGTGGTGGGGGTCGCTTGGAGCATCGCGCCGAGGTTGTCATAACATGGAGCGAACCCCTCACCACGAAGCCCGCGGGGTTCATATTAGAAGAAGTGTCGCCTCCAGAGACGCCACCACA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

TAATTGTGATCTCCGATTCGGAGGAGGGAGAAACACCGGAACCTCCGCGGGTAAGTGCCAGCTACGCTGGAAAGGTGGTGGGGGTCGCTTGGAGCATCGCGCCGAGGTTGTCATAACATGGAGCGAACCCCTCACCACGAAGCCCGCGGGGTTCATATTAGAAGAAGTGTCGCCTCCAGAGACGCCACCACA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................................................................................................................ACATGGAGCGAACCCCTC...........................................................	18	1	1.00	1	1	0	0	0	0	0
...................................................................................GTCGCTTGGAGCATCGCGCCG........................................................................................	21	12	0.67	8	8	0	0	0	0	0
................................................................................................................................................................GAAGAAGTGTCGCCTCCAGAGACG........	24	4	0.50	2	2	0	0	0	0	0
...................................................................................GTCGCTTGGAGCATCGCGCCGAG......................................................................................	23	12	0.42	5	4	0	0	0	0	1
...................................................................................GTCGCTTGGAGCATCGCGCCGA.......................................................................................	22	12	0.33	4	3	0	1	0	0	0
...........TCCGATTCGGAGGAGGGA...................................................................................................................................................................	18	10	0.30	3	3	0	0	0	0	0
...................................................................................GTCGCTTGGAGCATCGCGCCGAGG.....................................................................................	24	7	0.29	2	1	0	0	0	1	0
................................................................................................................................................................GAAGAAGTGTCGCCTCCAGAGACGC.......	25	4	0.25	1	1	0	0	0	0	0
................................................................................................................................................................GAAGAAGTGTCGCCTCCAGAGA..........	22	4	0.25	1	1	0	0	0	0	0
...................................................................................GTCGCTTGGAGCATCGCGCCGAGGTTC..................................................................................	27	7	0.14	1	1	0	0	0	0	0
...............................................................................GGGGGTCGCTTGGAGCATCGCGC..........................................................................................	23	11	0.09	1	1	0	0	0	0	0
...................................................................................GTCGCTTGGAGCATCGCGCCGG.......................................................................................	22	12	0.08	1	1	0	0	0	0	0
...................................................................................GTCGCTTGGAGCATCGCGC..........................................................................................	19	12	0.08	1	1	0	0	0	0	0
...................................................................................GTCGCTTGGAGCATCGCG...........................................................................................	18	12	0.08	1	1	0	0	0	0	0
....................................................................................TCGCTTGGAGCATCGCGCCG........................................................................................	20	12	0.08	1	1	0	0	0	0	0
...................................................................................GTCGCTTGGAGCATCGCGCC.........................................................................................	20	12	0.08	1	1	0	0	0	0	0
....................................................................................TCGCTTGGAGCATCGCGCCGAG......................................................................................	22	12	0.08	1	1	0	0	0	0	0
.......................................................TGCCAGCTACGCTGGAAAGGTGGTG................................................................................................................	25	15	0.07	1	1	0	0	0	0	0
..........................................................CAGCTACGCTGGAAAGGTGGT.................................................................................................................	21	15	0.07	1	0	1	0	0	0	0
......................................................................................................................TGGAGCGAACCCCTCACCACGAAGCCC...............................................	27	15	0.07	1	0	0	0	0	1	0
.......................................................TGCCAGCTACGCTGGAAAGGTGGTGG...............................................................................................................	26	15	0.07	1	1	0	0	0	0	0
...................................................TAAGTGCCAGCTACGCTGGAAAGGTGG..................................................................................................................	27	16	0.06	1	1	0	0	0	0	0
......................................................GTGCCAGCTACGCTGGAAAGGTGG..................................................................................................................	24	16	0.06	1	1	0	0	0	0	0

dmo_382

scaffold_5281:4844-4935 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-10.5	-10.0	-9.9