ID:

dmo_373

 Coordinate:

scaffold_4682:10666-10816 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.6 -3.2 -3.1

Flybase annnotation

CDS [Dmoj\GI14555-cds]; exon [dmoj_GLEANR_15291:2]; intron [Dmoj\GI14555-in]

No Repeatable elements found

mature
  1. scaffold_1753:3542-3564 +
  2. scaffold_2981:1905-1927 +
  3. scaffold_3472:598-620 +
  4. scaffold_4303:7791-7813 +
  5. scaffold_4682:2952-2974 +
  6. dmo_373  scaffold_4682:10765-10787 +
  7. scaffold_5037:954-976 +
  8. scaffold_6373:19136-19158 +
  9. scaffold_6373:22115-22137 +
  10. scaffold_6373:25261-25283 +
  11. scaffold_6373:28399-28421 +
  12. scaffold_6472:66520-66542 -
  13. scaffold_6482:490882-490904 -
star
  1. scaffold_40:2036-2062 -
  2. scaffold_64:2928-2954 +
  3. scaffold_164:3966-3992 -
  4. scaffold_536:831-857 +
  5. scaffold_2641:120-146 +
  6. scaffold_3443:359-385 +
  7. scaffold_4193:12061-12087 +
  8. scaffold_4193:44087-44113 +
  9. scaffold_4539:1840-1866 +
  10. scaffold_4682:2916-2942 +
  11. dmo_373  scaffold_4682:10729-10755 +
  12. scaffold_6339:5975-6001 +
  13. scaffold_6483:112640-112666 +
  14. scaffold_6500:29786564-29786590 +
  15. scaffold_6500:29825882-29825908 -
  16. scaffold_6505:1016-1042 -
  17. scaffold_6536:767-793 +
  18. scaffold_6541:2124460-2124486 +
  19. scaffold_6693:12378-12404 +
  20. scaffold_6693:14789-14815 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGCGATAAGTTAATAATATGCAATAGACCAATGCTGAGCCTTACACACTCAGCAATAGAAGCACTAGATTTAATGGTTGAAATTATACATAAGTCTGGGTATAAAAACCCGGGCCCAGCAGAATAAAGATTCAATACGAAACTAAACACCATCATAGTAAAGTGTATTCGTTCAAACCCTCTCCATGTGCGATCGTTCTAGCCGAGCGCAGCTGAGTGCACCTGCTTCCCGTCTGATCAAGCGCAGGGCTT
*****************************************************************************************************************......................(((((.....((((............)))).))))).******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V049
head
............................................ACACTCAGCAATAGAAGC............................................................................................................................................................................................. 18 0 20 0.75 15 0 13 0 2 0
.....................................................................................................................................................CATCATAGTACAGTGTATTCGTTCAAA........................................................................... 27 1 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................................................GATCGTTCTAGCCGAGCGCAGCTG..................................... 24 0 8 0.25 2 2 0 0 0 0
...............................................................CTGGATTTGATGGTTGAAATTATGCATA................................................................................................................................................................ 28 3 5 0.20 1 1 0 0 0 0
.....................................................................................................................................................CATCAAAGTAAAGTGTATTCGTTCAAA........................................................................... 27 1 8 0.13 1 1 0 0 0 0
................................................................................................................................................................................................TCGTTCTAGCCGAGCGCAGCTGA.................................... 23 0 8 0.13 1 1 0 0 0 0
...............................................................................................................................................................................................ATCGTTCTAGCCGAGCGCAGC....................................... 21 0 9 0.11 1 0 1 0 0 0
.......................................................................................................................................................................................................AGCAGAGCGCGGGTGAGTGCA............................... 21 3 9 0.11 1 0 0 1 0 0
.....................................................................................................................................................CATCATAGTAAAGTGTATTCGTT............................................................................... 23 0 13 0.08 1 0 1 0 0 0
................................................................................................................................................................................................................CAGGGGAGAGCACCTGCTT........................ 19 3 18 0.06 1 0 0 1 0 0
............................................ACACTCAGCACTAGAAGC............................................................................................................................................................................................. 18 1 20 0.05 1 0 1 0 0 0
..................................................................................................................................TCAATACGAAACTAAACACCATCA................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
.................................................................................................................CCCAGCAGAATAAAGATTCAATACGAA............................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................GCAGAATAAAGATTCAATACGAAAC............................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
.....................................................................................................TAAAAACCCGGGCCCAGCAGAATAAAGAT......................................................................................................................... 29 0 20 0.05 1 1 0 0 0 0
...........................................CACACTCAGCAATAGAAGCACTAG........................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
...............................................................CTAGATTTAATGGTTGAAATTATAC................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
...............................................................CTAGATTTAATGGTTGAAATTATACA.................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0
...............................................................................................TGGGTATAAAAACCCGGGCCCAGCAGAA................................................................................................................................ 28 0 20 0.05 1 1 0 0 0 0
...............................................................CTAGATTTAATGGTTGAAATTAT..................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
.................................................................CGATTTAGTGGTTGAAAT........................................................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 1
............................................................GCACTAGATTTAATGGTTGAAATTA...................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
..............................................................ACTAGATTTAATGGTTGAAATTATA.................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
.......................................CTTACACACTCAGCAATAGAAGC............................................................................................................................................................................................. 23 0 20 0.05 1 0 1 0 0 0
.......................................................TAGAAGCACTAGATTTAATGGTTGAAATT....................................................................................................................................................................... 29 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................TCAATACGAAACTAAACACCATCAT................................................................................................ 25 0 20 0.05 1 1 0 0 0 0
.........................................GATCCACTCAGCAATAGAAGC............................................................................................................................................................................................. 21 3 20 0.05 1 0 1 0 0 0
...........................CCAATGCTGAGCCTTACACAC........................................................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................AATACGAAACTAAACACCATCA................................................................................................. 22 0 20 0.05 1 1 0 0 0 0
....................CAATAGACCAATGCTGAGCCT.................................................................................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0
........................................TTACACACTCAGCAATAGAAGC............................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0
...................................GAGCCTTACACACTCAGCAATAGA................................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
..............................................................ACTAGATTTAATGGTTGAAATTATACAT................................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0
.......................TAGACCAATGCTGAGCCTTACACACA.......................................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
..............................................ACTCAGCAATAGAAGCACTAGAT...................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

GCGCTATTCAATTATTATACGTTATCTGGTTACGACTCGGAATGTGTGAGTCGTTATCTTCGTGATCTAAATTACCAACTTTAATATGTATTCAGACCCATATTTTTGGGCCCGGGTCGTCTTATTTCTAAGTTATGCTTTGATTTGTGGTAGTATCATTTCACATAAGCAAGTTTGGGAGAGGTACACGCTAGCAAGATCGGCTCGCGTCGACTCACGTGGACGAAGGGCAGACTAGTTCGCGTCCCGAA
*******************************************************************************......................(((((.....((((............)))).))))).***************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V056
head
 V049
head
...............................................GAGTCGTTATCTTCGTGATCTAAAT................................................................................................................................................................................... 25 0 20 47.00 940 940 0 0 0 0 0
............................................TGTGAGTCGTTATCTTCGTGATCTAAAT................................................................................................................................................................................... 28 0 20 3.35 67 0 67 0 0 0 0
.....................................................................................................................................................................................................................CTCACGTGGACGAAGGGCAGACTAGTT........... 27 0 1 2.00 2 0 0 2 0 0 0
...........................................................................................................GGGCCCGGGTCGTCTTATTTCTAAGT...................................................................................................................... 26 0 20 1.10 22 13 7 0 2 0 0
........................................................................................................................................................................................................................ACGTGGACGAAGGGCAGACTAGTT........... 24 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................................TGGGCCCGGGTCGTCTTATTTCTAAGT...................................................................................................................... 27 0 20 0.95 19 6 13 0 0 0 0
..................................................................................................................................................................................................................CGACTCACGTGGACGAAGTGCAGACT............... 26 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................CGTGGACGACGGGCAGACTA.............. 20 1 2 0.50 1 0 1 0 0 0 0
......................................................................................................................................................................................................................TCACGTGGACGAAGTGCAGACTAGTT........... 26 1 2 0.50 1 1 0 0 0 0 0
...................................................CGTTATCTTCGTGATCTAAAT................................................................................................................................................................................... 21 0 20 0.50 10 10 0 0 0 0 0
...........................................................................................................GGGCCCGGGTCGTCTTATTTCTAAGTT..................................................................................................................... 27 0 20 0.45 9 6 3 0 0 0 0
..............................................TGAGTCGTTATCTTCGTGATCTAAAT................................................................................................................................................................................... 26 0 20 0.40 8 0 0 8 0 0 0
............................................TGTGAGTCGTTATCTTCGTGATCT....................................................................................................................................................................................... 24 0 20 0.35 7 7 0 0 0 0 0
...............................................................................................................CCGGGTCGTCTTATTTCTAAGT...................................................................................................................... 22 0 20 0.30 6 1 5 0 0 0 0
..............................................TGAGTCGTTATCTTCGTGATCTA...................................................................................................................................................................................... 23 0 20 0.30 6 6 0 0 0 0 0
...................................CTCGGAATGTGTGAGTCGTTATCTT............................................................................................................................................................................................... 25 0 20 0.30 6 5 0 0 0 1 0
...........................................GTGTGAGTCGTTATCTTCGTGATCTAAAT................................................................................................................................................................................... 29 0 20 0.30 6 0 6 0 0 0 0
.............................................GTGAGTCGTTATCTTCGTGATCTTAAT................................................................................................................................................................................... 27 1 20 0.25 5 0 5 0 0 0 0
..............................................................................................................CCCGGGTCGTCTTATTTCTAAGT...................................................................................................................... 23 0 20 0.25 5 0 5 0 0 0 0
..............................................TGAGTCGTTATCTTGGTGATCTAAAT................................................................................................................................................................................... 26 1 20 0.25 5 5 0 0 0 0 0
.............................................GTGAGTCGTTATCTTGGTGATCTAAAT................................................................................................................................................................................... 27 1 20 0.25 5 5 0 0 0 0 0
.............................................................................................................................................................................................GCTAGCAAGATCGGCTCGCGTCGACT.................................... 26 0 8 0.25 2 1 0 1 0 0 0
................................................................................................................................................................................................AGCAAGATCGGCTCGCGTCGA...................................... 21 0 9 0.22 2 2 0 0 0 0 0
...................CGTTATCTGGTTACGACTCGGAATGT.............................................................................................................................................................................................................. 26 0 20 0.20 4 0 4 0 0 0 0
.............................................................................................................GCCCGGGTCGTCTTATTTCTAAGT...................................................................................................................... 24 0 20 0.20 4 2 2 0 0 0 0
...........................................GTGTGAGTCGTTATCTTCGTGATCTAA..................................................................................................................................................................................... 27 0 20 0.20 4 2 2 0 0 0 0
.............................................................................................................GCCCGGGTCGTCTTATTTCTAAGTT..................................................................................................................... 25 0 20 0.20 4 2 2 0 0 0 0
..................................................TCGTTATCTTCGTGATCTAAAT................................................................................................................................................................................... 22 0 20 0.20 4 0 4 0 0 0 0
...............................................GAGTCGTTATCTTCGTGATCTAA..................................................................................................................................................................................... 23 0 20 0.15 3 3 0 0 0 0 0
.........................................................................................................TTGGGCCCGGGTCGTCTTATTTCTAAGT...................................................................................................................... 28 0 20 0.15 3 2 1 0 0 0 0
..............................................................................................................CCCGGGTCGTCTTATTTCTAAGTT..................................................................................................................... 24 0 20 0.15 3 0 3 0 0 0 0
...............................................................................................................CCGGGTCGTCTTATTTCTAAGTT..................................................................................................................... 23 0 20 0.15 3 0 3 0 0 0 0
............................................................................................................GGCCCGGGTCGTCTTATTTCTAAGT...................................................................................................................... 25 0 20 0.15 3 0 3 0 0 0 0
..........................................................................................................TGGGCCCGGGTCGTCTTATTT............................................................................................................................ 21 0 20 0.15 3 3 0 0 0 0 0
..........................................................................................................TGGGCCCGGGTCGTCTTATTTCTAATT...................................................................................................................... 27 1 20 0.10 2 0 2 0 0 0 0
...................CGTTATCTGGTTACGACTCGGAATTT.............................................................................................................................................................................................................. 26 1 20 0.10 2 0 2 0 0 0 0
..............................................TGAGTCGTTATCTTCGTGATC........................................................................................................................................................................................ 21 0 20 0.10 2 2 0 0 0 0 0
..........................................................................................................TGGGCCCGGGTCGTCTTATTTCTAAGTT..................................................................................................................... 28 0 20 0.10 2 0 2 0 0 0 0
..............................................TGAGTCGTTATCTTCTTGATCTAAAT................................................................................................................................................................................... 26 1 20 0.10 2 0 2 0 0 0 0
..............................................TGAGTCGTTACCTTCGTGATCTAAAT................................................................................................................................................................................... 26 1 20 0.10 2 2 0 0 0 0 0
..............................................................................................................CCCGGGTCGTCTTATTTCTAAGTTAT................................................................................................................... 26 0 20 0.10 2 0 1 0 1 0 0
................................................................................................................................................................................................AGCAAGATCGGCTCGCGT......................................... 18 0 20 0.10 2 2 0 0 0 0 0
.....................................CGGAATGTGTGAGTCGTTATCTTC.............................................................................................................................................................................................. 24 0 20 0.10 2 0 2 0 0 0 0
..........................................................................................................TGGGCCCGGGTCGTCTTATTTCT.......................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0 0
............................................CGTGAGTCGTTATCTTCGTGATCTA...................................................................................................................................................................................... 25 1 20 0.10 2 0 2 0 0 0 0
................................................................................................................CGGGTCGTCTTATTTCTAAGT...................................................................................................................... 21 0 20 0.10 2 0 2 0 0 0 0
..........................................................................................................CGGGCCCGGGTCGTCTTATTTCTAAGT...................................................................................................................... 27 1 20 0.10 2 0 2 0 0 0 0
............................................TGTGAGTCGTTATCTTCGTGATCTAAAA................................................................................................................................................................................... 28 1 20 0.10 2 2 0 0 0 0 0
....................................................................................................................................................GGTAGTATCATTTCACATAAGCAAGT............................................................................. 26 0 12 0.08 1 1 0 0 0 0 0
..........................................................................................................CGGGCCCGGGTCGTCTTATTTCTAAG....................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
.................CACGTTATCTGGTTACGACTCGGAAT................................................................................................................................................................................................................ 26 1 20 0.05 1 1 0 0 0 0 0
..............................................................................................................GCCGGGTCGTCTTATTTCTAAGT...................................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0
.............................................CCGAGTCGTTATCTTCGTGATCTAAAT................................................................................................................................................................................... 27 2 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................GTTATGCTTTGATTTGTGGTAGT................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................CGCCCGGGTCGTCTTATTTCTAAGTT..................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................CCCGGGTCGTCTTATTTCTAAGTTATG.................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0 0
...........................................GTGCGAGTCGTTATCTTCGTGATCT....................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
..........................................................................................................CGGGCCCGGGTCGTCTTAT.............................................................................................................................. 19 1 20 0.05 1 0 1 0 0 0 0
.......................................................................................................................................TGCGTTGATTTGTGGTAGTATCAT............................................................................................ 24 1 20 0.05 1 0 0 1 0 0 0
...................................................CGTTATCTTCGAGATCTAAAT................................................................................................................................................................................... 21 1 20 0.05 1 0 1 0 0 0 0
...............................................GAGTCGTTAGCTTCGTGATCTAAAT................................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
............................................................................................................GGCCCGGGTCGTCTTATTTCTAA........................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0 0
...................CGTTATCTGGTTACGACTCGGAATCG.............................................................................................................................................................................................................. 26 2 20 0.05 1 1 0 0 0 0 0
...............................................GAGTCGTTATCTTCGTGATCTAAATT.................................................................................................................................................................................. 26 0 20 0.05 1 0 0 0 0 0 1
.................................................................................................CCATATTTTTGGGCCCGGGTCTTCTT................................................................................................................................ 26 1 20 0.05 1 0 1 0 0 0 0
............................................CGTGAGTCGTTATCTTCGTGATTTAA..................................................................................................................................................................................... 26 2 20 0.05 1 0 1 0 0 0 0
............................................TGTGAGTCGTTATCTTCTTGATCTAAAT................................................................................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0 0
...............................................GAGTCGTTATCTTCGTGATATA...................................................................................................................................................................................... 22 1 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................CGTCTTATTTCTAAGTTATGCTTTGAT........................................................................................................... 27 0 20 0.05 1 0 0 0 1 0 0
................................................AGTCGTTATCTTCGTGATCTAAATA.................................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0
..................................................................................................................GGTCGTCTTATTTCTAAGTTATGCT................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................TTGGGCTCGGGTCGTCTTATTTCTAAGT...................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0
...............................................................................................................CCGGGTCGTCTTATTTCTAAGTTATGCTT............................................................................................................... 29 0 20 0.05 1 0 1 0 0 0 0
..........................................TGTGTGAGTCGTTATCTTCGTGATCTA...................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................TTGGGCCCGGGTCGTCTTATTT............................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0 0
...........................................AAATGAGTCGTTATCTTCGTGATCTAAAT................................................................................................................................................................................... 29 3 20 0.05 1 1 0 0 0 0 0
.................................................................................................................GGGTCGTCTTATTTCTAAGTTATGCTT............................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
.............................................GTGAGTCGTTATCTTCGTGACCTAAAT................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
..........................................................................................................TGGGCCCGGGTCGTCTTATTTCTAACTT..................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0 0
....................................TCGGAATGTGTGAGTCGTTATCTTCGT............................................................................................................................................................................................ 27 0 20 0.05 1 0 0 1 0 0 0
...........................................................................................................GGGCCCGGGTCGTCTTATTTCTAAGTTA.................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................CCATATTTTTGGGCCCGGGTCGTCTTC............................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
..............................................CGAGTCGTTATCTTCGTGATCTA...................................................................................................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0
........................................................................................................TTTGGGCCCGGGTCGTCTTAT.............................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................GGGCCCGGGTCGTCTTATTTCTAAG....................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................TGGGCCCGGGTCGTCTTAT.............................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0
..............................................TGAGTCGTTATCTTCGTGATCT....................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................CTAAGTTATGCTTTGATTTGT....................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
..................................................TCGTTATCTTCGTGATCTAAATTAC................................................................................................................................................................................ 25 0 20 0.05 1 0 1 0 0 0 0
...........................................GTGTGAGTCGTTATCTTCGTGATCGA...................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
..........................................................................................................CGGGCCCGGGTCGTCTTATTTCTAAGGT..................................................................................................................... 28 2 20 0.05 1 0 1 0 0 0 0
....................GTTATCTGGTTACGACTCGGAATGTG............................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0
...............................................GAGTCGTTATCTTCGTGATTTAAAT................................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
..............................................................................................................CCCGGGTCGTCTTATTTCTAAGGT..................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0
..........................................................................................................TGGGCCCGGGTCGTCTTATTTCTAAGTTA.................................................................................................................... 29 0 20 0.05 1 1 0 0 0 0 0
...............................................GACTCGTTATCTTCGCGATCTAAAT................................................................................................................................................................................... 25 2 20 0.05 1 0 0 0 0 1 0
................................................................................................................GGGGTCGTCTTATTTCTAAGT...................................................................................................................... 21 1 20 0.05 1 0 1 0 0 0 0
.........................................ATGTGTGAGTCGTTATCTTCGTGATCGA...................................................................................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0 0
.............................................GTGAGTCGTTATCTTCGTGATCTACAT................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
................................................................................................CCCATATTTTTGGGCCCGGGTCGTCTT................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
...............................................GAGACGTTATCTTCGTGATCTAAAT................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
............................................TGTGAGTCGTTATCTTCGTGA.......................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................CCCGGGTCGTCTTATTTC........................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0
..................................................TCGTTATCTTCGTGATCTAAATTACCA.............................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................................................AGCAAGATCGGCTCGCGTC........................................ 19 0 20 0.05 1 1 0 0 0 0 0
...........................................GTGTGAGTCGTTATCTTCGTGATCTA...................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
............................................................................................................GGCCCGGGTCGTCTTATTTCT.......................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................CCCGGGTCGTCTTATTTCTGA........................................................................................................................ 21 1 20 0.05 1 0 1 0 0 0 0
.............................................GTGAGTCGTTATCATCGTGATCTAAAT................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
...............................................GAGTCGTTATCTTCGCGATCTAACT................................................................................................................................................................................... 25 2 20 0.05 1 0 0 0 1 0 0
..........................................TGTGTGAGTCGTTATCTTCGTGAT......................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................GGGCCCGGGTCGTCTTATTTCTAAGGT..................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
.............................................................................................................GCCCGGGTCGTCGTATTTCTAAGT...................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
.............................................GTGAGTCGTTATCTTCGTGATCTAAAC................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................ATTTCTAAGTTATGCTTTGATTTGT....................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
...............................................GAGTCGTTGTCTTCGTGATCTAAAT................................................................................................................................................................................... 25 1 20 0.05 1 0 0 0 1 0 0
..............................................AGAGTCGTTATCTTCGTGATCTAAAT................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
..........................................AGTGTGAGTCGTTATCTTCGTGAT......................................................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
..........................................................TTCGTGATCTAAATTACCAAC............................................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0
..............................................TGAGTCTTTATCTTCGTGATCTAAATT.................................................................................................................................................................................. 27 1 20 0.05 1 0 1 0 0 0 0
................................CGACTCGGAATGTGTGAGTCGTTATCT................................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................AAATTTGGGCCCGGGTCGTCTTATTTCT.......................................................................................................................... 28 2 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................CGTCTTATTTCTAAGTTATGCTTTG............................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................TATGCTTTGATTTGTGGCAG.................................................................................................. 20 1 20 0.05 1 0 1 0 0 0 0
.........................................................................................................TTGGGCCCGGGTCGTCTTATTTCTAATT...................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................GCTTTGATTTGTGGTAGTATCA............................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0
...............................................GAGTCGTTATCTTCGGGATCTAAAT................................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_4682:10616-10866 + dmo_373 CGCGA-----TAAGTTAATAATATGCAATAGACCAATGCTGAGCCTTACACACTCAGCAATAGAAGCAC--TAGATTTAATGGTTGAAATTAT---ACATAAGTCTGGGTATAAAAACCCGGGCCCAGCAGAATAAAGATTCAATACGAAACTAAACACCATCATAGTAAAGTGTATTCGTTCAAACCCTCTCCATGTGCGATCGTTCTAGCCGAGCGCAGCTGAGTGCACCTGCTTCCCGTCTGATCAAGCGCAGGGCTT
droEle1 scf7180000490818:8534-8622 - AACGGTATAAT-------TAATATTTAATCAAATTATGTTTCGATT-AAAAAT--------AAATAAATTAAAGATTCAATTTTTGTAATCCTAAAACATAAGTC------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chr2L_random_010:663950-663974 - AGTGTACGCATTAGTTTATAGTGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CGCGA-----TAAGTTAATAATATGCAATAGACCAATGCTGAGCCTTACACACTCAGCAATAGAAGCAC--TAGATTTAATGGTTGAAATTAT---ACATAAGTCTGGGTATAAAAACCCGGGCCCAGCAGAATAAAGATTCAATACGAAACTAAACACCATCATAGTAAAGTGTATTCGTTCAAACCCTCTCCATGTGCGATCGTTCTAGCCGAGCGCAGCTGAGTGCACCTGCTTCCCGTCTGATCAAGCGCAGGGCTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................ACACTCAGCAATAGAAGC..................................................................................................................................................................................................18200.75150200130
........................................................................................................................................................................................................GATCGTTCTAGCCGAGCGCAGCTG.....................................2480.252200000
..........................................................................................................................................................................................................TCGTTCTAGCCGAGCGCAGCTGA....................................2380.131100000
.........................................................................................................................................................................................................ATCGTTCTAGCCGAGCGCAGC.......................................2190.111000010
...............................................................................................................................................................CATCATAGTAAAGTGTATTCGTT...............................................................................23130.081000010
............................................................................................................................................TCAATACGAAACTAAACACCATCA.................................................................................................24200.051100000
...........................................................................................................................CCCAGCAGAATAAAGATTCAATACGAA...............................................................................................................27200.051100000
...............................................................................................................................GCAGAATAAAGATTCAATACGAAAC.............................................................................................................25200.051100000
...............................................................................................................TAAAAACCCGGGCCCAGCAGAATAAAGAT.........................................................................................................................29200.051100000
................................................CACACTCAGCAATAGAAGCAC--TAG...........................................................................................................................................................................................24200.051100000
....................................................................C--TAGATTTAATGGTTGAAATTAT---AC...................................................................................................................................................................25200.051100000
....................................................................C--TAGATTTAATGGTTGAAATTAT---ACA..................................................................................................................................................................26200.051100000
.........................................................................................................TGGGTATAAAAACCCGGGCCCAGCAGAA................................................................................................................................28200.051100000
....................................................................C--TAGATTTAATGGTTGAAATTAT---.....................................................................................................................................................................23200.051100000
.................................................................GCAC--TAGATTTAATGGTTGAAATTA.........................................................................................................................................................................25200.051100000
...................................................................AC--TAGATTTAATGGTTGAAATTAT---A....................................................................................................................................................................25200.051100000
............................................CTTACACACTCAGCAATAGAAGC..................................................................................................................................................................................................23200.051000010
............................................................TAGAAGCAC--TAGATTTAATGGTTGAAATT..........................................................................................................................................................................29200.051100000
............................................................................................................................................TCAATACGAAACTAAACACCATCAT................................................................................................25200.051100000
................................CCAATGCTGAGCCTTACACAC................................................................................................................................................................................................................21200.051000010
..............................................................................................................................................AATACGAAACTAAACACCATCA.................................................................................................22200.051100000
.........................CAATAGACCAATGCTGAGCCT.......................................................................................................................................................................................................................21200.051000010
.............................................TTACACACTCAGCAATAGAAGC..................................................................................................................................................................................................22200.051100000
........................................GAGCCTTACACACTCAGCAATAGA.....................................................................................................................................................................................................24200.051100000
...................................................................AC--TAGATTTAATGGTTGAAATTAT---ACAT.................................................................................................................................................................28200.051100000
............................TAGACCAATGCTGAGCCTTACACACA...............................................................................................................................................................................................................26200.051100000
...................................................ACTCAGCAATAGAAGCAC--TAGAT.........................................................................................................................................................................................23200.051100000
droEle1
AACGGTATAAT-------TAATATTTAATCAAATTATGTTTCGATT-AAAAAT--------AAATAAATTAAAGATTCAATTTTTGTAATCCTAAAACATAAGTC------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droYak3
AGTGTACGCATTAGTTTATAGTGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads

Generated: 05/17/2015 at 10:10 PM