ID:

dmo_369

 Coordinate:

scaffold_4502:4757-4935 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.4 -8.1 -8.0 -7.6

Flybase annnotation

CDS [Dmoj\GI18302-cds]; exon [dmoj_GLEANR_3177:2]; CDS [Dmoj\GI18302-cds]; exon [dmoj_GLEANR_3177:1]; intron [Dmoj\GI18302-in]

No Repeatable elements found

mature
  1. dmo_369  scaffold_4502:4872-4897 -
  2. scaffold_6328:4428028-4428053 +
  3. dmo_883  scaffold_6482:2457868-2457893 +
  4. scaffold_6500:29386674-29386699 +
  5. scaffold_6500:29757364-29757389 -
star
  1. dmo_369  scaffold_4502:4903-4926 -
  2. scaffold_6328:4427999-4428022 +
  3. dmo_883  scaffold_6482:2457839-2457862 +
  4. scaffold_6500:29386645-29386668 +
  5. scaffold_6500:29757395-29757418 -

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#############-------------------------------------
AATGTACTGGCACCTGTGATGAAGGAGCAACTGATCTCTAGCATGAAACGGTGCGTTTCTGCAGCGGGAAGGCCTGTGTTCTCCATAATCATTGATGAATCGACTGATGTTTCGGGTACAAAGGTCTTGGCGTGTGCTTACCCATATTTTTTCTACATAAAATAAGTCAGTTATTTTTACATATTATAATTTGAATTTCCTGACGATTTATTTGTTATGGTATTTATAGTGGTATTTTGTAAAATATGAAATAGTATTTTATAGTATATTTTTGAGACC
***********************************************************((..(((...((......((((..((.......))..))))...))..)))..))********************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V056
head
 V049
head
..............................CTGATCTCTAGCATGAAACGGTGC................................................................................................................................................................................................................................. 24 0 4 24.00 96 54 41 0 1 0 0
........................................................................................TCATTGATGAATCGACTGATGTTTCG..................................................................................................................................................................... 26 0 5 6.20 31 23 0 6 2 0 0
..............................CTGATCTCTAGCATGAAACGGTG.................................................................................................................................................................................................................................. 23 0 4 3.75 15 13 1 0 1 0 0
...................................................................................CAAAAGCTTTGATGAATCGAC............................................................................................................................................................................... 21 3 7 2.29 16 10 0 4 0 2 0
....................................................................................AAAAGCTTTGATGAATCGAC............................................................................................................................................................................... 20 3 15 2.20 33 22 0 9 0 1 1
........................................................................................TCATTGATGAATCGACTGATGTTT....................................................................................................................................................................... 24 0 5 2.00 10 7 0 0 3 0 0
........................................................................................TCATTGATGAATCGACTGATGTTTC...................................................................................................................................................................... 25 0 5 1.80 9 6 3 0 0 0 0
..............................CTGATCTCTAGCATGAAACGGTGCGT............................................................................................................................................................................................................................... 26 0 4 1.25 5 4 1 0 0 0 0
..............................CTGATCTCTAGCATGAAACGGTGCG................................................................................................................................................................................................................................ 25 0 4 1.25 5 4 1 0 0 0 0
..............................CTGTTCTCTAGCATGAAACGGTGC................................................................................................................................................................................................................................. 24 1 4 1.00 4 0 4 0 0 0 0
......................................................................................AAGCTTTGATGAATCGAC............................................................................................................................................................................... 18 2 9 0.78 7 4 0 2 0 1 0
..............................CGGATCTCTAGCATGAAACGGTGC................................................................................................................................................................................................................................. 24 1 4 0.75 3 0 3 0 0 0 0
...................................................................................CAAAAGCTTTGATGAATCGA................................................................................................................................................................................ 20 3 20 0.70 14 9 0 5 0 0 0
........................................................................................TCATTGATGAATCGACTGATG.......................................................................................................................................................................... 21 0 5 0.60 3 3 0 0 0 0 0
...............................TGATCTCTAGCATGAAACGGTGC................................................................................................................................................................................................................................. 23 0 4 0.50 2 2 0 0 0 0 0
..............................CTGATCTCTAGCATGAAACGGTGCGTC.............................................................................................................................................................................................................................. 27 1 4 0.50 2 2 0 0 0 0 0
..............................CTCATCTCTAGCATGAAACGGTGC................................................................................................................................................................................................................................. 24 1 4 0.50 2 0 2 0 0 0 0
..............................CTGATCTCTAGCATGAAACGGT................................................................................................................................................................................................................................... 22 0 4 0.50 2 2 0 0 0 0 0
........................................................................................TCATTGATGAATCGACTGATGTTTCGCC................................................................................................................................................................... 28 2 5 0.40 2 2 0 0 0 0 0
................................................................CGGGAAGTCCTGTTTTCG..................................................................................................................................................................................................... 18 3 20 0.35 7 7 0 0 0 0 0
............CCTGTGATGAAGGAGCAACTGATCTC................................................................................................................................................................................................................................................. 26 0 3 0.33 1 0 1 0 0 0 0
.......................GGAGCAACTGATCTCTAGCATGAA........................................................................................................................................................................................................................................ 24 0 3 0.33 1 0 0 1 0 0 0
..............................CTGATCTCTAGCATGAAACGGTGCGTT.............................................................................................................................................................................................................................. 27 0 4 0.25 1 0 1 0 0 0 0
..............................CTGATCTCTAGCATGAAACGGTGT................................................................................................................................................................................................................................. 24 1 4 0.25 1 1 0 0 0 0 0
...............................TGATCTCTAGCATGAAACGGTGCGTTTC............................................................................................................................................................................................................................ 28 0 4 0.25 1 1 0 0 0 0 0
..............................CGGTTCTCTAGCATGAAACGGTGC................................................................................................................................................................................................................................. 24 2 4 0.25 1 0 1 0 0 0 0
..............................CTGATCTCTAGCATGAAACGGTGCGTTTC............................................................................................................................................................................................................................ 29 0 4 0.25 1 1 0 0 0 0 0
..............................CTGATCTCTAGCATGAAACGGTTC................................................................................................................................................................................................................................. 24 1 4 0.25 1 0 1 0 0 0 0
..............................CTGATCTCTAGCATGAAACGGTGCGC............................................................................................................................................................................................................................... 26 1 4 0.25 1 1 0 0 0 0 0
..............................CGGATCTCTAGCATGAAACTGTGCGC............................................................................................................................................................................................................................... 26 3 4 0.25 1 0 1 0 0 0 0
................................GATCTCTAGCATGAAACGGTGC................................................................................................................................................................................................................................. 22 0 4 0.25 1 0 1 0 0 0 0
.....................................................................................................................ACAAAGGTCTTGGCGTGTGCT............................................................................................................................................. 21 0 4 0.25 1 0 0 0 0 1 0
.............................CCTGATCTCTAGCATGAAACGGTGC................................................................................................................................................................................................................................. 25 1 4 0.25 1 0 1 0 0 0 0
..............................CTGATCTCTAGCATGAAACGGTAC................................................................................................................................................................................................................................. 24 1 4 0.25 1 0 1 0 0 0 0
..............................CAGATCTCTAGCATGAAACGGTGC................................................................................................................................................................................................................................. 24 1 4 0.25 1 0 1 0 0 0 0
..............................CTGATCTCCAGCATGAAACGGTGC................................................................................................................................................................................................................................. 24 1 4 0.25 1 0 1 0 0 0 0
....................................................................................................................................................................................................................TGTTATGGTATTTATAGTGGTATT........................................... 24 0 20 0.25 5 5 0 0 0 0 0
......................................................................................AATCATTGATGAATCGACTGATGTTTCG..................................................................................................................................................................... 28 0 5 0.20 1 1 0 0 0 0 0
...........................................................TGCAGCGGGAGGGCCTGTGTTCTCC................................................................................................................................................................................................... 25 1 5 0.20 1 1 0 0 0 0 0
.................................................................................TCCATAATCATTGATGAATCGACTGA............................................................................................................................................................................ 26 0 5 0.20 1 1 0 0 0 0 0
........................................................................................TTATTGATGAATCGACTGATGTTT....................................................................................................................................................................... 24 1 5 0.20 1 0 1 0 0 0 0
..........................................................................TGTGTTCTCCATAATCATTGATGAAT................................................................................................................................................................................... 26 0 5 0.20 1 1 0 0 0 0 0
..........................................................................................ATTGATGAATCGACTGATGTTTCG..................................................................................................................................................................... 24 0 5 0.20 1 1 0 0 0 0 0
...........................................................TGCAGCGGGAAGGCCTGTGTTCTC.................................................................................................................................................................................................... 24 0 5 0.20 1 1 0 0 0 0 0
..........................................................CTGCAGCGGGAAGGCCTGT.......................................................................................................................................................................................................... 19 0 5 0.20 1 0 0 1 0 0 0
........................................................................................TCATTGATGAAACGACTGATGTTTCG..................................................................................................................................................................... 26 1 5 0.20 1 1 0 0 0 0 0
........................................................................................TCATTGATGAATCGACTGATGTTTCGC.................................................................................................................................................................... 27 1 5 0.20 1 1 0 0 0 0 0
...........................................................TGCAGCGGGAAGGCCTGTGTTCTCC................................................................................................................................................................................................... 25 0 5 0.20 1 0 1 0 0 0 0
.........................................................................................CATTGATGAATCGACTGATGTTT....................................................................................................................................................................... 23 0 5 0.20 1 1 0 0 0 0 0
........................................................TTCTGCAGCGGGAAGGCCTGTGTTCT..................................................................................................................................................................................................... 26 0 5 0.20 1 1 0 0 0 0 0
.........................................................................................CATTGATGAATCGACTGATGT......................................................................................................................................................................... 21 0 5 0.20 1 1 0 0 0 0 0
........................................................................................TCATTGATGAATCGACTGATGT......................................................................................................................................................................... 22 0 5 0.20 1 0 0 0 1 0 0
........................................................................................TCATTGATGAATCGACTGATGTTTCC..................................................................................................................................................................... 26 1 5 0.20 1 1 0 0 0 0 0
........................................................................................TCATTGATGAATCGACTGATGCTTCG..................................................................................................................................................................... 26 1 5 0.20 1 1 0 0 0 0 0
.........................................................................................CATTGATGAATCGACTGATGTT........................................................................................................................................................................ 22 0 5 0.20 1 1 0 0 0 0 0
........................................................................................TCATTGATGAATCGACTGAT........................................................................................................................................................................... 20 0 5 0.20 1 1 0 0 0 0 0
........................................................................................TCATTGATGAAGCGACTGATGTTTCG..................................................................................................................................................................... 26 1 5 0.20 1 1 0 0 0 0 0
.........................................................................................CATTGATGAATCGACTGATGTTTCG..................................................................................................................................................................... 25 0 5 0.20 1 1 0 0 0 0 0
........................................................................................TCATTGATGAATCGACTGATGTTTT...................................................................................................................................................................... 25 1 5 0.20 1 0 1 0 0 0 0
........................................................................................TCATTGATGAATCGACTGATGTT........................................................................................................................................................................ 23 0 5 0.20 1 0 1 0 0 0 0
........................................................................................GCATTGATGAATCGACTGATGTTTCGC.................................................................................................................................................................... 27 2 5 0.20 1 1 0 0 0 0 0
.......................................................................................GTCATTGATGAATCGACTGATGTTTCG..................................................................................................................................................................... 27 1 5 0.20 1 1 0 0 0 0 0
.....................................................................................TAATCATTGATGAATCGACTGATC.......................................................................................................................................................................... 24 1 5 0.20 1 1 0 0 0 0 0
.........................................................TCTGCAGCGGGAAGGCCTGTG......................................................................................................................................................................................................... 21 0 5 0.20 1 0 0 1 0 0 0
........................................................TTCTGCAGCGGGAAGGCCTGTGTT....................................................................................................................................................................................................... 24 0 5 0.20 1 1 0 0 0 0 0
..............................CTGATCTCTAGCCTGAAACGGTGC................................................................................................................................................................................................................................. 24 1 5 0.20 1 0 1 0 0 0 0
....................................................................................................................................................................................................................TGTTATGGTATTTATAGTGGTATTT.......................................... 25 0 20 0.15 3 3 0 0 0 0 0
...................................................................................CAAAACCTTTGATGAATCGAC............................................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0
.................................................GGTTCGATTCCGCAGCGGGA.................................................................................................................................................................................................................. 20 3 9 0.11 1 0 0 0 0 1 0
....................................................................................................................................................................................................................TGTTATGGTATTTATAGTGGTATTTTGT....................................... 28 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................................................GACGATTTATTTGTTATGGTAT........................................................ 22 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GGTATTTATAGTGGTATT........................................... 18 0 20 0.05 1 0 1 0 0 0 0
....................................................................................................................................................................................................................TGTTATGGTATTTATAGTGGTATTTC......................................... 26 1 20 0.05 1 0 0 1 0 0 0
....................................................................................................................................................................................................................AGTTATGGTATTTATAGTGGTATC........................................... 24 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TTACATGACCGTGGACACTACTTCCTCGTTGACTAGAGATCGTACTTTGCCACGCAAAGACGTCGCCCTTCCGGACACAAGAGGTATTAGTAACTACTTAGCTGACTACAAAGCCCATGTTTCCAGAACCGCACACGAATGGGTATAAAAAAGATGTATTTTATTCAGTCAATAAAAATGTATAATATTAAACTTAAAGGACTGCTAAATAAACAATACCATAAATATCACCATAAAACATTTTATACTTTATCATAAAATATCATATAAAAACTCTGG
*********************************************************************************************************************************************************************((..(((...((......((((..((.......))..))))...))..)))..))*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
......................................................................CCGGACACAAGAGGTATTAGTAACTACT..................................................................................................................................................................................... 28 0 5 28.40 142 98 42 2 0
........................................................................GGACACAAGAGGTATTAGTAACTACT..................................................................................................................................................................................... 26 0 5 28.20 141 127 8 3 3
.......................................................................CGGACACAAGAGGTATTAGTAACTACT..................................................................................................................................................................................... 27 0 5 11.00 55 48 7 0 0
.........................................................................GACACAAGAGGTATTAGTAACTACT..................................................................................................................................................................................... 25 0 5 3.60 18 17 1 0 0
........................................................................GGACACAAGAGGTATTAGTAACTAC...................................................................................................................................................................................... 25 0 5 1.60 8 8 0 0 0
......................................................................CCGGACACAAGAGGTATTAGTAACTAC...................................................................................................................................................................................... 27 0 5 1.40 7 7 0 0 0
..........................................................................ACACAAGAGGTATTAGTAACTACT..................................................................................................................................................................................... 24 0 5 1.20 6 6 0 0 0
......................................................................CCGGACACAAGAGGTATTAGTAACTAGT..................................................................................................................................................................................... 28 1 5 1.00 5 0 5 0 0
.....................................................................TCCGGACACAAGAGGTATTAGTAACTACT..................................................................................................................................................................................... 29 0 5 0.80 4 3 1 0 0
.........................................GTACTTTGCCACGCAAAGACGTCGCCCTT................................................................................................................................................................................................................. 29 0 4 0.75 3 3 0 0 0
...................................................................................GTTTTCGAAACTACTTAGCTG............................................................................................................................................................................... 21 3 7 0.71 5 4 0 1 0
.............................................TTTGCCACGCAAAGACGTCGCCCTT................................................................................................................................................................................................................. 25 0 5 0.60 3 3 0 0 0
............................................................CGTCGCCCTTCCGGACACAAGAGGTAT................................................................................................................................................................................................ 27 0 5 0.40 2 2 0 0 0
.....................................................................CCCGGACACAAGAGGTATTAGTAACTACT..................................................................................................................................................................................... 29 1 5 0.40 2 1 1 0 0
........................................................................................AGTAACTACTTAGCTGACTACAAAGC..................................................................................................................................................................... 26 0 5 0.40 2 1 0 0 1
.....................................................................TCCGGACACAAGAGGTATTAGTAACTAC...................................................................................................................................................................................... 28 0 5 0.40 2 2 0 0 0
......................................................................CCGGACACAAGAGGTATTAGTAACTACG..................................................................................................................................................................................... 28 1 5 0.40 2 1 1 0 0
.......................................................................CGGACACAAGAGGTATTAGTAACTAC...................................................................................................................................................................................... 26 0 5 0.40 2 2 0 0 0
...........................................................................CACAAGAGGTATTAGTAACTACT..................................................................................................................................................................................... 23 0 5 0.40 2 1 1 0 0
...........................................ACTTTGCCACGCAAAGACGTCGCCCTT................................................................................................................................................................................................................. 27 0 5 0.40 2 2 0 0 0
........................................................................GGGCACAAGAGGTATTAGTAACTACT..................................................................................................................................................................................... 26 1 5 0.40 2 2 0 0 0
...........TGGACACTACTTCCTCGTTGACTAGAGAT............................................................................................................................................................................................................................................... 29 0 3 0.33 1 1 0 0 0
.............GACACTACTTCCTCGTTGACTAGAGAT............................................................................................................................................................................................................................................... 27 0 3 0.33 1 1 0 0 0
............GGACACTACTTCCTCGTTGACTAGAGA................................................................................................................................................................................................................................................ 27 0 3 0.33 1 1 0 0 0
................ACTACTTCCTCGTTGACTAGAGAT............................................................................................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0
..........................................TACTTTGCCACGCAAAGACGTCGCCCTT................................................................................................................................................................................................................. 28 0 4 0.25 1 1 0 0 0
................................................................GCCCTTCAGGACAAAAGC..................................................................................................................................................................................................... 18 3 20 0.25 5 5 0 0 0
.............................TGACTAGAGATCGTACTTTGCCACGCA............................................................................................................................................................................................................................... 27 0 4 0.25 1 1 0 0 0
..................................................................................................................................CCACACCAATGGGGATAAAA................................................................................................................................. 20 3 4 0.25 1 0 1 0 0
...............CACTACTTCCTAGTTGACTAGAGAT............................................................................................................................................................................................................................................... 25 1 4 0.25 1 0 1 0 0
........................................................................GGACACAAGAGGTATTAGTAACTA....................................................................................................................................................................................... 24 0 5 0.20 1 1 0 0 0
..............................................TTGCCACGCAAAGACGTCGCCCT.................................................................................................................................................................................................................. 23 0 5 0.20 1 1 0 0 0
.......................................................................CGGACACAAGAGGTATTAGTAACTACC..................................................................................................................................................................................... 27 1 5 0.20 1 1 0 0 0
........................................................................GGACACAAGAGGTAGTAGTAACTACT..................................................................................................................................................................................... 26 1 5 0.20 1 1 0 0 0
........................................................................GGACACAAGAGGTATTAG............................................................................................................................................................................................. 18 0 5 0.20 1 1 0 0 0
............................................................................ACAAGAGGTATTAGTAACTACT..................................................................................................................................................................................... 22 0 5 0.20 1 1 0 0 0
......................................................................CCGGACACAAGAGGTATTAGTAACTA....................................................................................................................................................................................... 26 0 5 0.20 1 1 0 0 0
......................................................................CCGGACACAAGAGGTCTTAGTAACTACT..................................................................................................................................................................................... 28 1 5 0.20 1 0 1 0 0
......................................................................CCGGACACAAGAGGTATTAGTAACCACT..................................................................................................................................................................................... 28 1 5 0.20 1 0 1 0 0
......................................................................CCGGACACAAGAGGTATTAGTAACTAAT..................................................................................................................................................................................... 28 1 5 0.20 1 1 0 0 0
.........................................................................GACACAAGAGGTATTAGTAACTACTC.................................................................................................................................................................................... 26 1 5 0.20 1 1 0 0 0
........................................................................GGACACAAGAGGAATTAGTAACTACT..................................................................................................................................................................................... 26 1 5 0.20 1 1 0 0 0
......................................................................CCGGACACAAGAGGTGTTAGTAACTAC...................................................................................................................................................................................... 27 1 5 0.20 1 1 0 0 0
.............................................................................CAAGAGGTATTAGTAACTACT..................................................................................................................................................................................... 21 0 5 0.20 1 1 0 0 0
.......................................................................CGGACACAAGAGGTACTAGTAACTACT..................................................................................................................................................................................... 27 1 5 0.20 1 1 0 0 0
......................................................................CCGGACACTAGAGGTATTAGTAACTACT..................................................................................................................................................................................... 28 1 5 0.20 1 0 1 0 0
........................................................................GGACACAAGAGGTATTAGTAA.......................................................................................................................................................................................... 21 0 5 0.20 1 1 0 0 0
.............................................TTTGCCACGCAAAGACGTCGCCCT.................................................................................................................................................................................................................. 24 0 5 0.20 1 1 0 0 0
......................................................................CCGGACACAAGAGGTATTAGTAACT........................................................................................................................................................................................ 25 0 5 0.20 1 1 0 0 0
......................................................................CCGGACACAAGAGGTATTAGTAACTACTG.................................................................................................................................................................................... 29 1 5 0.20 1 1 0 0 0
..............................................TTGCCACGCAAAGACGTCGCCCTT................................................................................................................................................................................................................. 24 0 5 0.20 1 1 0 0 0
......................................................................CCGAACACAAGAGGTATTAGTAACTACT..................................................................................................................................................................................... 28 1 5 0.20 1 0 1 0 0
............................................CTTTGCCACGCAAAGACGTCGCCCTT................................................................................................................................................................................................................. 26 0 5 0.20 1 1 0 0 0
...............................................TGCCACGCAAAGACGTCGCCCTT................................................................................................................................................................................................................. 23 0 5 0.20 1 1 0 0 0
..........................................................................ACACAAGAGGTATTAGTAACTACTTAGCT................................................................................................................................................................................ 29 0 5 0.20 1 1 0 0 0
......................................................................CCGGACACAAAAGGTATTAGTAACTACT..................................................................................................................................................................................... 28 1 5 0.20 1 1 0 0 0
.......................................................................CGGACACAAGAGGTATTAGTAACTA....................................................................................................................................................................................... 25 0 5 0.20 1 1 0 0 0
...........................................................ACGTCGCCCTTCCGGACACAAGAGGTAT................................................................................................................................................................................................ 28 0 5 0.20 1 1 0 0 0
............................................CTTTGCCACGCAAAGACGTCGCCCT.................................................................................................................................................................................................................. 25 0 5 0.20 1 1 0 0 0
.........................................................................GACACAAGAGGTATTAGTAACTA....................................................................................................................................................................................... 23 0 5 0.20 1 1 0 0 0
.....................................................................TCCGGACACAAGAGGTATTAGTAACTA....................................................................................................................................................................................... 27 0 5 0.20 1 0 1 0 0
...............................................................CGCCCTTCCGGACACAAGAGGTATTAGT............................................................................................................................................................................................ 28 0 5 0.20 1 1 0 0 0
.........................................................................GACACAAGAGGTAGTAGTAACTACT..................................................................................................................................................................................... 25 1 5 0.20 1 1 0 0 0
......................................................................GAGGACACAAGAGGTATTAGTAACTACT..................................................................................................................................................................................... 28 2 5 0.20 1 1 0 0 0
......................................................................CCGGACACAAGAGGTAATAGTAACTACT..................................................................................................................................................................................... 28 1 5 0.20 1 1 0 0 0
...............................................................CGCCCTTCCGGACACAAGAG.................................................................................................................................................................................................... 20 0 5 0.20 1 1 0 0 0
....................................................................................................................................................................................................................................................ATACTTTATCATAAAATATCATATAAA........ 27 0 20 0.20 4 4 0 0 0
......................................................................CCGGACACAAGAGGTATTAGTAACTCCT..................................................................................................................................................................................... 28 1 5 0.20 1 0 1 0 0
........................................................................GGACACAAGATGTATTAGTAACTACT..................................................................................................................................................................................... 26 1 5 0.20 1 1 0 0 0
........................................................................GGACACAAGAGGTATTAGTA........................................................................................................................................................................................... 20 0 5 0.20 1 1 0 0 0
.....................................................................................................................................................................................................................................................TACTTTATCATAAAATATCATATAAA........ 26 0 20 0.15 3 3 0 0 0
....................................................................................TTTTCGAAACTACTTAGCTG............................................................................................................................................................................... 20 3 15 0.13 2 2 0 0 0
....................................................................................................................................CCACCAATGGGGATAAAAAA............................................................................................................................... 20 3 8 0.13 1 0 0 0 1
..........................................................................ACACAAAAGGTATTAGTAAG......................................................................................................................................................................................... 20 2 8 0.13 1 0 0 1 0
......................................................................................TTCGAAACTACTTAGCTG............................................................................................................................................................................... 18 2 9 0.11 1 1 0 0 0
.........................................................................................................................................................................................................CTGCTAAATAAACAATACCAT......................................................... 21 0 20 0.10 2 0 2 0 0
...........................................................................CACAAAAGGTATTAGTAAG......................................................................................................................................................................................... 19 2 12 0.08 1 1 0 0 0
..........................................................................................................................................................................................................................CCATAAATATCACCATAACACATTTT................................... 26 1 20 0.05 1 0 1 0 0
......................................................................................................................................................................................................................................................ACTTTATCATAAAATATCATATAAA........ 25 0 20 0.05 1 1 0 0 0
..........................................................................................................................................................................................................................................................TATCATAAAATATCATATAAA........ 21 0 20 0.05 1 0 1 0 0
.......................................................................................................................................................................................................................ATACCATAAATATCACCATAAAACATT..................................... 27 0 20 0.05 1 1 0 0 0
.........................................................................................................................................................................................................................ACCATAAATATCACCATAAAACATTTT................................... 27 0 20 0.05 1 1 0 0 0
...........................................................................................................................................................................................................GCTAAATAAACAATACCAT......................................................... 19 0 20 0.05 1 1 0 0 0
.............................................................................................................................................................................................................................TAAATATCACCATAAAACATTTTAT................................. 25 0 20 0.05 1 1 0 0 0
.........................................................................................................................................................................................................................................................TTATCATAAAATATCATATAAAAA...... 24 0 20 0.05 1 1 0 0 0
....................................................................................................................................................................................................................................................ATACTTTATCATAAAATATCA.............. 21 0 20 0.05 1 1 0 0 0
................................................................................................................................................................................................................................ATATCACCATAAAACATTTTA.................................. 21 0 20 0.05 1 1 0 0 0
...................................................................................................................................................................................................................................................TATACTTTATCATAAAATATCATATAAA........ 28 0 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_4502:4707-4985 - dmo_369 AATGTACTGGCACCTGTGATGAAGGAGCAACTGATCTCTAGCATGAAACGGTGCGTTTCTGCAGCGGGAAGGCCTGTGTTCTCCATAATCATTGATGAATCGACTGATGTTTCGGGTACAA-AGGTCTTGGCGTGTGCTTACCCATAT----TTTTTCTACATAAAATAAGTCAGTTATTTTTACATATTATAATTTGAATTTCCTGACGATTTATTTG--------TTATGGTATTTATAGTGGTATTTTGTAAAATATGAAATAGTATTTTATAGTATATTTTTGAGACC
droWil2 scf2_1100000004953:384903-385051 - AATGTACTGGCACCTGTGATGAAGGAGCAACTGATCTCTAGCATGAAACGGTGCGTTTCTGCAGCGGGAAGGCCTGTGTTCTCCATAATCATTGATGAATCAACTGATGTTTCGTGTACAA-AGGTCTTGGCGTGTGCT-----GTTATGTA---------------------------------------------------------------------------------------------------------------------------------TTT--------
dp5 Unknown_group_15:41870-42028 - AATGTGATGGCACCTGCTGCAAAGGAAAAACTGAGGAGTGAGGTTAAAAAGAGCGTGTGCCCAGCTGGAAAAACCATGTTTTCGATCATCATCGACGAGTCTACGGATGTGACATGTACTA-ATTTACTAGCGTGCGCA-----GTAG----TTATTCGACACCAAGTA---------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_51:16081-16239 - AATGTGATGGCACCTGCTGCAAAGGAAAAACTGAGGAGTGAGGTTAAAAAGAGCGTGTGCCCAGCTGGAAAAACCATGTTTTCGATCATCATCGACGAGTCTACGGATGTGACATGTACTA-CTTTACTAGCGTGCGCA-----GTAG----TTATTCGACACCAAGTA---------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396505:5487-5636 + AAAGTTCTGGCGCCTGTAATGAAGGAAAATTTGATTGAAAACATGAGACGGTGTGTTTCTGCTGCTGGAAGGCCTGTGTTTTCTGTTATAATAGACGAATCAACGGATGTTGCGTGCACGA-AGGTGTTGGCGTGTGCT-----GTCATGTT--C------------------------------------------------------------------------------------------------------------------------------TTT--------
droKik1 scf7180000302526:11629-11777 + AATGTTCTGGCACCTGTGATGAAGGAGCAACTGATCTCTAGCATTAAACGGTGCGTTTCTGCAGCGGGAAGGCCTGTGTTCTCCATAATCATTGATGAATCGACTGATGTTTCATGTACAA-AGGTCTTGGCGTGTGCT-----GTTATGTA---------------------------------------------------------------------------------------------------------------------------------TTT--------
droFic1 scf7180000454023:6648-6786 + AATGTACTGGCACCTGTGATGAAGGAGGAACTGATCTCTAGCATGAAACGGTGCGTTTCTGCAGTGGGAAGGCCTGTGTTCTCCATAATCATTGATGAATCGACTGATGTTTCGTGTACAAAAGGTCTTTGCGTGTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000775074:1253-1400 + CCTT-----ATTTTTTCTATATAAAATAAGTCAATTAATATTTTTACATATTACATATT-AT----------------------------------------------------------------------------------------------------------------------------------AATTTGAATATCCAGGCGATTTATTTG--------TTATGGTATTTGTAGTGGTATTTTGTAAAATATGATATAGTATTTTATAGTATATTTTTGAGACC
droBia1 scf7180000301760:3826851-3826982 - AAAATGAATAAATTTCT--------------------------TTATATA-TTTGTATGCCT----------------------------------------------------------------------------------------------------------------------------------AATTCAAATATTCAGGCGTTTTAACTGACATT--TTTATGGTATTT-CAGTGGAATATTCTAAAATATAAGATGGTATATATTAGTATATTTTCGACAGA
droTak1 scf7180000415381:141879-141927 - GCAGTATTTCC-------------------------------------------------------------------------------------------------------GGTATAA--------------------------------------------------------------------------------------------------------------------------------------------TAATAGTATTTTATAGTATATTTTTGAGACC
droEug1 scf7180000409581:80311-80432 + TTTTTAAATATAATTG---------------------------------------TATGCGA----------------------------------------------------------------------------------------------------------------------------------AGTTCAAATATTCAGGCGTTTTACCTGACTTTTTTTTATGGTATTT-TAATGGTATATTTTGAAATATGAAATAGTATATTTTAGTACATTTTTTAAGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AATGTACTGGCACCTGTGATGAAGGAGCAACTGATCTCTAGCATGAAACGGTGCGTTTCTGCAGCGGGAAGGCCTGTGTTCTCCATAATCATTGATGAATCGACTGATGTTTCGGGTACAA-AGGTCTTGGCGTGTGCTTACCCATAT----TTTTTCTACATAAAATAAGTCAGTTATTTTTACATATTATAATTTGAATTTCCTGACGATTTATTTG--------TTATGGTATTTATAGTGGTATTTTGTAAAATATGAAATAGTATTTTATAGTATATTTTTGAGACCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................CTGATCTCTAGCATGAAACGGTGC..............................................................................................................................................................................................................................................24424.009654100410
........................................................................................TCATTGATGAATCGACTGATGTTTCG..................................................................................................................................................................................2656.20312320006
..............................CTGATCTCTAGCATGAAACGGTG...............................................................................................................................................................................................................................................2343.75151310010
........................................................................................TCATTGATGAATCGACTGATGTTT....................................................................................................................................................................................2452.0010730000
........................................................................................TCATTGATGAATCGACTGATGTTTC...................................................................................................................................................................................2551.809600030
..............................CTGATCTCTAGCATGAAACGGTGCGT............................................................................................................................................................................................................................................2641.255400010
..............................CTGATCTCTAGCATGAAACGGTGCG.............................................................................................................................................................................................................................................2541.255400010
........................................................................................TCATTGATGAATCGACTGATG.......................................................................................................................................................................................2150.603300000
...............................TGATCTCTAGCATGAAACGGTGC..............................................................................................................................................................................................................................................2340.502200000
..............................CTGATCTCTAGCATGAAACGGTGCGTC...........................................................................................................................................................................................................................................2740.502200000
..............................CTGATCTCTAGCATGAAACGGT................................................................................................................................................................................................................................................2240.502200000
........................................................................................TCATTGATGAATCGACTGATGTTTCGCC................................................................................................................................................................................2850.402200000
............CCTGTGATGAAGGAGCAACTGATCTC..............................................................................................................................................................................................................................................................2630.331000010
.......................GGAGCAACTGATCTCTAGCATGAA.....................................................................................................................................................................................................................................................2430.331000001
..............................CTGATCTCTAGCATGAAACGGTGCGTT...........................................................................................................................................................................................................................................2740.251000010
..............................CTGATCTCTAGCATGAAACGGTGT..............................................................................................................................................................................................................................................2440.251100000
...............................TGATCTCTAGCATGAAACGGTGCGTTTC.........................................................................................................................................................................................................................................2840.251100000
..............................CTGATCTCTAGCATGAAACGGTGCGTTTC.........................................................................................................................................................................................................................................2940.251100000
..............................CTGATCTCTAGCATGAAACGGTGCGC............................................................................................................................................................................................................................................2640.251100000
................................GATCTCTAGCATGAAACGGTGC..............................................................................................................................................................................................................................................2240.251000010
.....................................................................................................................ACAA-AGGTCTTGGCGTGTGCT.........................................................................................................................................................2140.251000100
.........................................................................................................................................................................................................................TG--------TTATGGTATTTATAGTGGTATT...........................................24200.255500000
......................................................................................AATCATTGATGAATCGACTGATGTTTCG..................................................................................................................................................................................2850.201100000
.................................................................................TCCATAATCATTGATGAATCGACTGA.........................................................................................................................................................................................2650.201100000
..........................................................................TGTGTTCTCCATAATCATTGATGAAT................................................................................................................................................................................................2650.201100000
..........................................................................................ATTGATGAATCGACTGATGTTTCG..................................................................................................................................................................................2450.201100000
...........................................................TGCAGCGGGAAGGCCTGTGTTCTC.................................................................................................................................................................................................................2450.201100000
..........................................................CTGCAGCGGGAAGGCCTGT.......................................................................................................................................................................................................................1950.201000001
........................................................................................TCATTGATGAATCGACTGATGTTTCGC.................................................................................................................................................................................2750.201100000
...........................................................TGCAGCGGGAAGGCCTGTGTTCTCC................................................................................................................................................................................................................2550.201000010
.........................................................................................CATTGATGAATCGACTGATGTTT....................................................................................................................................................................................2350.201100000
........................................................TTCTGCAGCGGGAAGGCCTGTGTTCT..................................................................................................................................................................................................................2650.201100000
.........................................................................................CATTGATGAATCGACTGATGT......................................................................................................................................................................................2150.201100000
........................................................................................TCATTGATGAATCGACTGATGT......................................................................................................................................................................................2250.201010000
........................................................................................TCATTGATGAATCGACTGATGTTTCC..................................................................................................................................................................................2650.201100000
.........................................................................................CATTGATGAATCGACTGATGTT.....................................................................................................................................................................................2250.201100000
........................................................................................TCATTGATGAATCGACTGAT........................................................................................................................................................................................2050.201100000
.........................................................................................CATTGATGAATCGACTGATGTTTCG..................................................................................................................................................................................2550.201100000
........................................................................................TCATTGATGAATCGACTGATGTTTT...................................................................................................................................................................................2550.201000010
........................................................................................TCATTGATGAATCGACTGATGTT.....................................................................................................................................................................................2350.201000010
.....................................................................................TAATCATTGATGAATCGACTGATC.......................................................................................................................................................................................2450.201100000
.........................................................TCTGCAGCGGGAAGGCCTGTG......................................................................................................................................................................................................................2150.201000001
........................................................TTCTGCAGCGGGAAGGCCTGTGTT....................................................................................................................................................................................................................2450.201100000
.........................................................................................................................................................................................................................TG--------TTATGGTATTTATAGTGGTATTT..........................................25200.153300000
.........................................................................................................................................................................................................................TG--------TTATGGTATTTATAGTGGTATTTTGT.......................................28200.051100000
..............................................................................................................................................................................................................GACGATTTATTTG--------TTATGGTAT........................................................22200.051100000
.......................................................................................................................................................................................................................................GGTATTTATAGTGGTATT...........................................18200.051000010
.........................................................................................................................................................................................................................TG--------TTATGGTATTTATAGTGGTATTTC.........................................26200.051000001
droWil2
AATGTACTGGCACCTGTGATGAAGGAGCAACTGATCTCTAGCATGAAACGGTGCGTTTCTGCAGCGGGAAGGCCTGTGTTCTCCATAATCATTGATGAATCAACTGATGTTTCGTGTACAA-AGGTCTTGGCGTGTGCT-----GTTATGTA---------------------------------------------------------------------------------------------------------------------------------TTT--------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................GATGAAGGAGCAACTGATCTCTAGC..........................................................................................................................................................................................................................................................2511.00100010
............................................................................................TGATGAATCAACTGATGTTTCGTG................................................................................................................................................................................2411.00101000
..............................CTGATCTCTAGCATGAAACGGTGCGTT...........................................................................................................................................................................................................................................2711.00101000
...............................TGATCTCTAGCATGAAACGGTGCGTT...........................................................................................................................................................................................................................................2611.00101000
.....................................CTAGCATGAAACGGTGCGTTTCT........................................................................................................................................................................................................................................2311.00101000
...................TGAAGGAGCAACTGATCTCTAGCAT........................................................................................................................................................................................................................................................2511.00100010
................TGATGAAGGAGCAACTGATCTCTAGCAT........................................................................................................................................................................................................................................................2811.00100010
...........................................................................................TTGATGAATCAACTGATGTTTCGT.................................................................................................................................................................................2411.00110000
..............................................................................................................TTCGTGTACAA-AGGTCTTGGCGTGTGC..........................................................................................................................................................2711.00100010
..............................CTGATCTCTAGCATGAAACGGTGCGT............................................................................................................................................................................................................................................2611.00101000
.................................ATCTCTAGCATGAAACGGTGCGT............................................................................................................................................................................................................................................2311.00100010
....................................TCTAGCATGAAACGGTGCGTTTCTG.......................................................................................................................................................................................................................................2511.00100010
..............................................................................................................TTCGTGTACAA-AGGTCTTGGCGTG.............................................................................................................................................................2411.00101000
....................................................................................................................TACAA-AGGTCTTGGCGTGTGCT-----GT..................................................................................................................................................2420.50100010
dp5
AATGTGATGGCACCTGCTGCAAAGGAAAAACTGAGGAGTGAGGTTAAAAAGAGCGTGTGCCCAGCTGGAAAAACCATGTTTTCGATCATCATCGACGAGTCTACGGATGTGACATGTACTA-ATTTACTAGCGTGCGCA-----GTAG----TTATTCGACACCAAGTA---------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................CTACGGATGTGACATGTACT............................................................................................................................................................................2011.0010100000000
............................................................................................CGACGAGTCTACGGATGTGAC...................................................................................................................................................................................2111.0010100000000
............................................................................................CGACGAGTCTACGGATGT......................................................................................................................................................................................1811.0011000000000
...................................................................................GATCATCATCGACGAGTCTACG...........................................................................................................................................................................................2211.0010100000000
.....................................................................................TCATCATCGACGAGTCTACGG..........................................................................................................................................................................................2111.0010100000000
...................................................................................................................GTACTA-ATTTACTAGCGTGCGC..........................................................................................................................................................2211.0010100000000
droPer2
AATGTGATGGCACCTGCTGCAAAGGAAAAACTGAGGAGTGAGGTTAAAAAGAGCGTGTGCCCAGCTGGAAAAACCATGTTTTCGATCATCATCGACGAGTCTACGGATGTGACATGTACTA-CTTTACTAGCGTGCGCA-----GTAG----TTATTCGACACCAAGTA---------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droBip1
AAAGTTCTGGCGCCTGTAATGAAGGAAAATTTGATTGAAAACATGAGACGGTGTGTTTCTGCTGCTGGAAGGCCTGTGTTTTCTGTTATAATAGACGAATCAACGGATGTTGCGTGCACGA-AGGTGTTGGCGTGTGCT-----GTCATGTT--C------------------------------------------------------------------------------------------------------------------------------TTT--------SizeHit CountTotal NormTotal
No Reads
droKik1
AATGTTCTGGCACCTGTGATGAAGGAGCAACTGATCTCTAGCATTAAACGGTGCGTTTCTGCAGCGGGAAGGCCTGTGTTCTCCATAATCATTGATGAATCGACTGATGTTTCATGTACAA-AGGTCTTGGCGTGTGCT-----GTTATGTA---------------------------------------------------------------------------------------------------------------------------------TTT--------SizeHit CountTotal NormTotal
No Reads
droFic1
AATGTACTGGCACCTGTGATGAAGGAGGAACTGATCTCTAGCATGAAACGGTGCGTTTCTGCAGTGGGAAGGCCTGTGTTCTCCATAATCATTGATGAATCGACTGATGTTTCGTGTACAAAAGGTCTTTGCGTGTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CCTT-----ATTTTTTCTATATAAAATAAGTCAATTAATATTTTTACATATTACATATT-AT----------------------------------------------------------------------------------------------------------------------------------AATTTGAATATCCAGGCGATTTATTTG--------TTATGGTATTTGTAGTGGTATTTTGTAAAATATGATATAGTATTTTATAGTATATTTTTGAGACCSizeHit CountTotal NormTotal
No Reads
droBia1
AAAATGAATAAATTTCT--------------------------TTATATA-TTTGTATGCCT----------------------------------------------------------------------------------------------------------------------------------AATTCAAATATTCAGGCGTTTTAACTGACATT--TTTATGGTATTT-CAGTGGAATATTCTAAAATATAAGATGGTATATATTAGTATATTTTCGACAGASizeHit CountTotal NormTotal
No Reads
droTak1
GCAGTATTTCC-------------------------------------------------------------------------------------------------------GGTATAA--------------------------------------------------------------------------------------------------------------------------------------------TAATAGTATTTTATAGTATATTTTTGAGACCSizeHit CountTotal NormTotal
No Reads
droEug1
TTTTTAAATATAATTG---------------------------------------TATGCGA----------------------------------------------------------------------------------------------------------------------------------AGTTCAAATATTCAGGCGTTTTACCTGACTTTTTTTTATGGTATTT-TAATGGTATATTTTGAAATATGAAATAGTATATTTTAGTACATTTTTTAAGGASizeHit CountTotal NormTotal
No Reads

Generated: 05/17/2015 at 10:09 PM