ID:

dmo_364

 Coordinate:

scaffold_4314:2277-2427 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.4 -15.0 -14.8 -14.4

Flybase annnotation

exon [dmoj_GLEANR_13911:2]; CDS [Dmoj\GI13978-cds]; intron [Dmoj\GI13978-in]

No Repeatable elements found

mature
  1. scaffold_132:1072-1092 -
  2. scaffold_1995:1027-1047 -
  3. scaffold_2672:1141-1161 +
  4. scaffold_2728:849-869 -
  5. scaffold_2890:697-717 -
  6. scaffold_3120:238-258 +
  7. scaffold_4023:1934-1954 +
  8. scaffold_4063:4538-4558 +
  9. dmo_364  scaffold_4314:2332-2352 +
  10. scaffold_4986:393-413 -
  11. scaffold_5453:776-796 -
  12. scaffold_5784:2429-2449 +
  13. scaffold_6100:43408-43428 +
  14. scaffold_6154:4261-4281 -
  15. scaffold_6309:1890-1910 -
  16. scaffold_6356:41113-41133 +
  17. scaffold_6475:72737-72757 +
  18. dmo_2194  scaffold_6540:34120098-34120118 +
  19. scaffold_6680:23413184-23413204 +
star
  1. scaffold_147:517-539 +
  2. scaffold_1995:957-979 -
  3. scaffold_2672:1209-1231 +
  4. scaffold_2728:779-801 -
  5. scaffold_2890:627-649 -
  6. scaffold_3120:306-328 +
  7. scaffold_3709:2018-2040 +
  8. scaffold_4023:2002-2024 +
  9. scaffold_4063:4606-4628 +
  10. dmo_364  scaffold_4314:2400-2422 +
  11. scaffold_4986:323-345 -
  12. scaffold_5018:74-96 +
  13. scaffold_5453:706-728 -
  14. scaffold_5784:2497-2519 +
  15. scaffold_6100:43476-43498 +
  16. scaffold_6309:1820-1842 -
  17. scaffold_6356:41181-41203 +
  18. scaffold_6475:72805-72827 +
  19. scaffold_6487:86026-86048 +
  20. dmo_2194  scaffold_6540:34120166-34120188 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
NNNNNNNNNNNNNNNNNNCTGTTTAATATATTGTGTTAAAAACCAAAAAGACAAAAATAAGTGTGTTCTGCCCGCTGGTACTGGAAGTGCCGCTGCTGCGGCACCCGCAACAAAGAAGTAAGAGGCCAAGTCTGAAAATAACGCCATGGGCTTCGCTCTCTTCGAATAAACCAACCTACTTCAACATTCGTATGTACTAAGCTTACGAAAACAACAACAGCAGCGACGGCAAGAACAACAGCAACCACGAA
*********************************************************************************************************.((......(((((.((((((.((((((..............)))))).)).))))................)))))...........)).******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V056
head
 V049
head
..........................................................................................................................................................................CAAACCTACTTGAACATGCG............................................................. 20 3 20 1.20 24 6 17 0 1
..........................................................................................................................................................................CAAACCTACTTGAACATGC.............................................................. 19 3 20 0.90 18 18 0 0 0
............................................................................................................................................................................AACCTACTTGAACATGCG............................................................. 18 2 20 0.15 3 2 0 1 0
.........................................................................................................CGCAACAAAGAAGTAAGAGGC............................................................................................................................. 21 0 19 0.05 1 0 0 1 0
..........................................................................................................................................................................CAAACCTACTTGAACATGCGT............................................................ 21 3 20 0.05 1 0 1 0 0
.............................................................................................................................................................................ACCTACTTCAACATTCGTATGTA....................................................... 23 0 20 0.05 1 1 0 0 0
....................................................................................................................................................GGCTTCGCTCTCTTCGAATA................................................................................... 20 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

NNNNNNNNNNNNNNNNNNGACAAATTATATAACACAATTTTTGGTTTTTCTGTTTTTATTCACACAAGACGGGCGACCATGACCTTCACGGCGACGACGCCGTGGGCGTTGTTTCTTCATTCTCCGGTTCAGACTTTTATTGCGGTACCCGAAGCGAGAGAAGCTTATTTGGTTGGATGAAGTTGTAAGCATACATGATTCGAATGCTTTTGTTGTTGTCGTCGCTGCCGTTCTTGTTGTCGTTGGTGCTT
*******************************************************.((......(((((.((((((.((((((..............)))))).)).))))................)))))...........)).********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V049
head
 V056
head
..........................................................................................................................................................................GTTTGGATGAACTTGTACG.............................................................. 19 3 20 0.35 7 0 6 0 1
..........................................................................................................................................ATTGCGGTACCCGAAGCGAGAGAAGCT...................................................................................... 27 0 20 0.35 7 7 0 0 0
...........................................................................................................................................TTGCGGTACCCGAAGCGAGAGAAGCTT..................................................................................... 27 0 20 0.30 6 6 0 0 0
.............................................................................................................................................GCGGTACCCGAAGCGAGAGAAGCTT..................................................................................... 25 0 20 0.30 6 6 0 0 0
..........................................................................................................................................ATTGCGGTACCCGAAGCGAGAGAAGCTT..................................................................................... 28 0 20 0.30 6 6 0 0 0
...........................................................TCACACAAGACGGGCGACCATGACCT...................................................................................................................................................................... 26 0 10 0.30 3 3 0 0 0
......................................................................................................TGGGCGTTGTTTCTTCATTCTCCGGTT.......................................................................................................................... 27 0 19 0.21 4 4 0 0 0
......................................................................................................TGGGCGTTGTTTCTTCATTCTCCGGT........................................................................................................................... 26 0 19 0.16 3 3 0 0 0
..............................................................................................CGACGCCGTGGGCGTTGTTTCTTCATTCT................................................................................................................................ 29 0 20 0.15 3 3 0 0 0
.............................................................................................................................................GCGGTACCCGAAGCGAGAGAAGCTTAT................................................................................... 27 0 20 0.15 3 3 0 0 0
..........................................................................................................................................................................GTTTGGATGAACTTGTACGC............................................................. 20 3 20 0.15 3 1 0 2 0
.............................................................................................................................................GCGGTACCCGAAGCGAGAGAAGCTTATT.................................................................................. 28 0 20 0.15 3 3 0 0 0
.............................................................................................................................................GCGGTACCCGAAGCGAGAGAAGCT...................................................................................... 24 0 20 0.15 3 2 1 0 0
.............................................................................................................................................GCGGTACCCGAAGCGAGAGAAGCTTATTT................................................................................. 29 0 20 0.15 3 3 0 0 0
.......................................................................................................GGGCGTTGTTTCTTCATTCTCCGGT........................................................................................................................... 25 0 19 0.11 2 2 0 0 0
..................................................................................................................................................ACCCGAAGCGAGAGAAGCTTATTTGGTT............................................................................. 28 0 19 0.11 2 2 0 0 0
.......................................................................................................GGGCGTTGTTTCTTCATTCTCCGGTT.......................................................................................................................... 26 0 19 0.11 2 2 0 0 0
............................................................................................................................................................................TTGGATGAACTTGTACGC............................................................. 18 2 20 0.10 2 2 0 0 0
.........................................................ATTCACACAAGACGGGCGACCATGAC........................................................................................................................................................................ 26 0 10 0.10 1 0 1 0 0
.............................................................................................ACGACGCCGTGGGCGTTGTTTCTTCAT................................................................................................................................... 27 0 20 0.10 2 2 0 0 0
..............................................................................................................................................CGGTACCCGAAGCGAGAGAAGCTT..................................................................................... 24 0 20 0.10 2 2 0 0 0
............................................................................................................................................TGCGGTACCCGAAGCGAGAGAAGCTTAT................................................................................... 28 0 20 0.10 2 2 0 0 0
........................................................TATTCACACAAGACGGGCGACCATGACCT...................................................................................................................................................................... 29 0 10 0.10 1 1 0 0 0
................................................................................................................................................GTACCCGAAGCGAGAGAAGCTTATTT................................................................................. 26 0 20 0.10 2 1 1 0 0
..................................................................................................................................................ACCCGAAGCGAGAGAAGCTTATTTGGT.............................................................................. 27 0 20 0.10 2 2 0 0 0
.................................................................................................CGCCGTGGGCGTTGTTTCTTCATTCT................................................................................................................................ 26 0 20 0.10 2 2 0 0 0
..............................................................................................................................................CGGTACCCGAAGCGAGAGAAGCTTATTT................................................................................. 28 0 20 0.10 2 2 0 0 0
.....................................................................................................................................................CGAAGCGAGAGAAGCTTATTTGGTT............................................................................. 25 0 19 0.05 1 1 0 0 0
...........................................................................................................................................TTGCGGTACCCGAAGCGAGAGAAGCTTAT................................................................................... 29 0 19 0.05 1 0 1 0 0
....................................................................................................CCTGGGCGTTGTTTCTTCATTCTCCGGTT.......................................................................................................................... 29 1 19 0.05 1 1 0 0 0
.....................................................................................................GTGGGCGTTGTTTCTTCATTCTCCGGTT.......................................................................................................................... 28 0 19 0.05 1 1 0 0 0
.......................................................................................................................................................................TTTGGTTGGATGAAGTTGTAAGCAT........................................................... 25 0 20 0.05 1 0 1 0 0
.......................................................................................................................................................................CTTGGTTGGATGAAGTTGTAAGCATA.......................................................... 26 1 20 0.05 1 0 1 0 0
...........................................................................................................................................TTGCGGTACCCGAAGCGAGAGAAGCT...................................................................................... 26 0 20 0.05 1 1 0 0 0
................................................................................................ACGCCGTGGGCGTTGTTTCTTCATTCT................................................................................................................................ 27 0 20 0.05 1 1 0 0 0
..........................................................................................................................................ATTGCGGTACCCGAAGCGAGAGAAGC....................................................................................... 26 0 20 0.05 1 1 0 0 0
............................................................................................................................................TTCGGTACCCGAAGCGAGAGAAGCT...................................................................................... 25 1 20 0.05 1 0 1 0 0
...................................................................................................................................................CCCGAAGCGAGAGAAGCTTATTTGGT.............................................................................. 26 0 20 0.05 1 1 0 0 0
............................................................................................................................................TGCGGTACCCGAAGCGAGAGAAGCTTATTT................................................................................. 30 0 20 0.05 1 0 1 0 0
..............................................................................................CGACGCCGTGGGCGTTGTTTCTTCATT.................................................................................................................................. 27 0 20 0.05 1 1 0 0 0
..............................................................................................CGACGCCGTGGGCGTTGTTTCTTCAT................................................................................................................................... 26 0 20 0.05 1 1 0 0 0
............................................................................................................................................TGCGGTACCCGAAGCGAGAGAAGCTT..................................................................................... 26 0 20 0.05 1 1 0 0 0
...................ACAAATTATATAACACAATTTTTGGTTTT........................................................................................................................................................................................................... 29 0 20 0.05 1 1 0 0 0
.................................................................................................................................................TACCCGAAGCGAGAGAAGCTTATTT................................................................................. 25 0 20 0.05 1 1 0 0 0
................................................................................................................................................GTACCCGAAGCGAGAGAAGCTT..................................................................................... 22 0 20 0.05 1 1 0 0 0
...............................................................................................GACGCCGTGGGCGTTGTTTCTTCATT.................................................................................................................................. 26 0 20 0.05 1 1 0 0 0
...........................................................................................CGACGACGCCGTGGGCGTTGTTTCTT...................................................................................................................................... 26 0 20 0.05 1 1 0 0 0
............................................................................................................................................................AGAGAAGCTTATTTGGTTGGATGAAGTT................................................................... 28 0 20 0.05 1 0 1 0 0
......................................................................................CACGGCGACGACGCCGTGGGCGTTGT........................................................................................................................................... 26 0 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................................................................GTTCTTTTAGTCGTTGGTGCTT 22 2 20 0.05 1 0 1 0 0
..................................................................................................................................................ACCCGAAGCGAGAGAAGCTTATT.................................................................................. 23 0 20 0.05 1 1 0 0 0
..............................................................................................................................................CGGTACCCGAAGCGAGAGAAGCTTATT.................................................................................. 27 0 20 0.05 1 1 0 0 0
...............................................................................................................................................................GAAGCTTATTTGGTTGGATGAAGT.................................................................... 24 0 20 0.05 1 0 1 0 0
..................................................................................................................................................ACCCGAAACGAGAGAAGCTTATTTGGT.............................................................................. 27 1 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_4314:2227-2477 + dmo_364 NNNNNNNNNNNNNNNNNNCTGTTTAATATATTGTGTTAAAAACC----AAA--------AAGACAAAAA---------TAAGTGTGTTCTGCCCGCTGGTAC-TGGAAGTGCCGCTGCTGCG-------------------------------------------------------------------------------------------------GC---ACCCGCAACAAAGAAG-T-------AA------GA----------------------------GGCC--------AAGTCT--------GAAAATAACGCCATGGGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------CGCTCTCT---------------------------------------------------------------------------------------T----CGAATAAACCAACCTACTTCAACATTCGTATGTACTAAGCTTA------------------------------------------------------------C------GAAAACAACAACAGCA--------------------GCGACGGCA------------------AGAACAACAGCA---AC---------------------------------------------------C------------ACGA-A
droVir3 scaffold_12928:6658109-6658315 + ------------------AC--------------------CAAA----AAG---------------AAGAAACCAAAGAAACAGCGCGCCGTCACCATGGAT-----G--------------------------------------------------A--------------------------------------------------------TGCGGC---CGTTGCGGCA-----------------------------------------------------------------------------------------------------------------------------GCGGCAACAACT-------------------------------------------------------------------------------------------------GGCGGCAA---------T-----------------------TTGCAGCGCATGCAACAGATA---------------------------------ACCAAATCAGCATCG-------------------------------------TCC---AACATGATGTCACAGCGTTTGCGCAG-C------------------------------AACATGGATTA------------------------------------------------------------C------TACAACAATAGCAGCA--------------------GCAGCAGCA------------------ACAACAACAGCA---AC---------------------------------------------------A------------ACAA-C
droGri2 scaffold_14753:2405-2587 - ------------------AA--------------------AAAA----CAA---------------GAA---------------GGC------------------------------------------------------------------------------------------------AAAAACAA--CAGTAA---------------CAGTAAC---ATCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------ACAGCAACAGCAGCAGCAGCAGCAAACAACAAGCTAAAA-ATGCCGTCAAATGCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACACGTTTAAATGT------------------------------------------------------------------------------------CAAAATGTAACTCCGCAGAC------GGCAACAACAGCAACA--------------------GCAGTAGCA------------------GCAGCAAGAGTA---AC---------------------------------------------------A------------ACAG-C
droWil2 scf2_1100000004511:6264732-6264944 - ------------------AA--------------------AACA----ACA--------------------------------------------------------------------AC---------A-------------------------------------------------------------------------------------------------A-----------------------------C--------------AACGATAAGCGCAG----------------------------CT------------GCA---------ACATCTACAACTGTTCCCTCAACCGGA-----------------------------------------------------------------------------------------------------------GCAGCAGCAGCAGCAGCTGG--AACAGCAACAACGACCAGCAGCAAGAA-ACTTACCGAGCATGATATTCAAGAGCGTTTGCTATCCTTCCATGCAGCCAACATTTCGTATTTGCAATCTCAGAATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGCA------------------AGTTCCTCCACT---AC---------------------------------------------------T------------ACATCT
dp5 XL_group1a:5701896-5702108 + ------------------TC--------------------TGCC----AGC---------------T---------------------------------CG-AGGAAGAGGCGCGGCAACG-------------------------------------------------------------------------------------------------GC---AACGGCA---------TGGAGAACGAC------AG----------------------------GGAC--------AAGTCGGTTGAGCCCAAAGTAGAGCCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------GGCCAGGA------------------------------CGCGCAGC---------------------------------------------------------------------------------------T----CCAGGCAGCAGACCAAGA----------------------------CC------CTCGACGTCCCATTGGGGGAAGAGCCATTACAGCGGGA----------------------GCCGCAGCAGCA--------------------GCCACAGGC------CTTGCCCACG--CCAACGCCAACGGCGAC-----------------------------------------------------------------CAC-T
droPer2 scaffold_12:202090-202251 - ------------------TA--------------------CTGC----AAC-------------------------------------------------------------------------------A--------------------------------------CCAACGGAAGACAAA-----------------------------------AA---ATCAACA---------CCAA--------------A----------------------------AACCACGAAGGCTTCA--------------------------CCAACGATTTCACCCAAA---------AATTCAACTACAACGACA----------------------------------------------------------------ACA----------------------------------T---------CAA--------------------------------------------------------------------------------------------------------------------AGGTGAAA--------------------------------------------------------------------------TTAC------------------------------------------------------------CAAAAACTACAACAGAAAAGATA--------------------TTATCAACA------------------GCTGTGTCAACA---AC---------------------------------------------------C------------AAGA-C
droAna3 scaffold_13340:4279313-4279469 - ------------------TG--------------------GCAG----C-------------------------------------------------------GGCAGTGTCGCTG---------------------------------------------------------------------------------G---------------CTGTGGC---AGTCACAACATTGTCGCC-------G-------GC----------------------------AGTC--------ATG---------------------------------------------------------------------------------ACCAGCTCGCCAATG-TCGCTGTCATGCATCCAACATACGGCAGTTG----------------------------------CCACAACAACAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACAGCAACA--------------------GCAACAGCA------------------ATAACAACAACA---AC---------------------------------------------------A------------GCAG-T
droBip1 scf7180000396708:537482-537689 - ------------------AG--------------------ATAC-------------------------------------TT---------------------------------------------------------TTGTCGCAGCTGCTGGCAATGGCAGC---ACA-----------------------------------------------GCTGTGACATCG---------TCAAGAATCACAAGCCC------------------------------------------TTGACC--------CGCA------------------------------------------------------ACTCCA--------------------------------------------------------------------------------------------------A---------G-----------------------TCAC------------------AGAGCCTTGTGGGCATCGGTCCATCCCAGTCAACCGTATCGCTGCCGTCGTACCCTCGCAGTGTAAGTGGCGAAAATAAGA--------------------------------------------------------------------------T-----------------------------------------------------------------------------CCCTCAACA--------------------CCAGCACCA------------------GAACAATCACCA---GA---------------------------------------------------T------------TCAA-A
droKik1 scf7180000302461:1897796-1897936 + ------------------GC--------------------CAGA----TGG---------------T---------------------------------TG-AGGAAGCGGCTCTGCAGCA-------------------------------------------------------------------------------------------------GC---ATCTCCAACAAATCAC-G-------G-------GC-----------------AG-CGAAGCGT-------------------------------TGGCGCCAT----------------------------------------------TGTTGCTTCAGTTAGTGGGCCAAACTGTG----------CC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTGGCA--------------------GCAGAAACA------------------GCAACAGCAGCC---AC---------------------------------------------------A------------GCAA-C
droFic1 scf7180000454050:589706-589938 - ------------------GT--------------------TCAAAATCAACGCCTGACAATGACAAAAG---------CAGCGACGTGGCGCCCCAAAATAA--------------------------------------------------------C-----------------------------------------------------------------AGCAG-----------------------------T-------------------------------------GGCAGCA--------------------------GCAGCAGCAGCAACTGAA---------GGAGCAGCAACAACAGCA----------------------------------------------------------------ACAGCAGTGCCAGGAG-------------------------------CAAC-----------------------------------------------------------------------------------------------------------------------------ACCAATCAAAA-----------------------------------------------------------------------------------------------------------------------------C------AGCAGCAACATCAAGA--------------------GCAGCAGCA------------------ACTGCAACTGCA---ACGAAAGCAATAACAATCAATGGGCCCCAAACGACATGGCGACGTCAACGAGGC------------TGCA-A
droEle1 scf7180000491261:641712-641899 - ------------------AG--------------------AAGC----CAG---------------AAG---------AAAAT---------------------------------------------------------ATGTCTTGGAAAATGGAAAAGCCCGAGCAGCG-----------------------------------------------GC---AGCAATAACATTGAGC-T-------AG------TGATGTAATACGGAGCAAAAG-TGAAT-------------------------------------------CG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAT---T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGTTGGAAAAAAGAAACAGATTATACAATTTGTGTTGCTG-------------------------C-TGAAGTGAACTAGGACAACAGCAACAGCA------------------AT------ACTT---TC---------------------------------------------------A------------GC---G
droRho1 scf7180000766547:551-705 + ------------------GG--------------------AAGC----C--------------------------------------------------------------GCGCTGCTGCA-------------------------------------------------------------------------------------------------GC---AACTGCAACAAATCAC-G-------G-------GC-----------------AG-CGAAGCGT-------------------------------TGGCGCCAT----------------------------------------------TGTTGCAGGAGTTAATAGGCCAAACTGTG----------CCA----------------------------------------AATTGGCAGGCACAGCAGAAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCAGCA--------------------GCAACAACA------------------GCAACAGCAGCA---AC---------------------------------------------------A------------ACCA-A
droBia1 scf7180000302428:6867707-6867887 + ------------------GT--------------------TGCT-----GC---------------T---------------------------------GG-AAGAAG-AACTCAGCGGCA---GCAACAGCAACAACCAAGCCAGGAACA-------------------------------------------------------------------AC---AGCAA-----------------------------C--------------AACACCAACAGCAG----------------------------CA------------GCA---------ACACTCAC-------------------------------------------------------------------------AGCAGCAACAACATAAG-------------------------------CA---ACAGCAACAGCAACA-------------------------------------------------------------------------------------------------------------------------------------------------------CC----AAAGCC-----------------------------------AG------------------------------------------------------------C------AGCAACAACGACACTA--------------------GCAGCAACA------------------GCAACAACAGCA---AC---------------------------------------------------A------------TCAG-C
droTak1 scf7180000412451:10788-10933 + ------------------GC--------------------CACA------------------------------------------------------------------------GATGCAGCAAC---A--------------------------------------ACA-----------------------------------------------AC---AGGA------------------CTTTCAAAACC------------------------------------------AAGTCC--------AGCA------------ACG---------ACAACAGCATCAAAACCAACAACCACAGCA-------------------------------------------------------------------G-------------------------CCATACC---------AACAACAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------C------CAAACCAACAACAGCA--------------------GCCAAACCA------------------ACAACAACAGCA---GT---------------------------------------------------A------------ATAC-C
droEug1 scf7180000409538:100087-100283 - ------------------CA--------------------AACG----------------------------------TAGCGGTGCCTTGCCCGCCAGCAACAGGCAGCA----------------------------------------------------------GCA-----------------------------------------------GC---AGCAGCAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTGCACAACGGCAATGGCAGTCAGAAT------------CC--CT----------------------------------------------------------------------------TCATCAAGGAGAACTACTGGAACACGCCGCC----CACAAGAGCCAGTCTGCTGCTCCATTCGCCTACGGAGT---------------------------------------------------------------------------ACTCTGAGGAGCA--------------------GCAGCAGCA------------------GCAACAACAACA---AC---------------------------------------------------A------------GCAG-C
dm3 chr2R:7853155-7853348 + ------------------AA--------------------AAGA----CAA---------------AGA---------------TAT------------------------------------------------------------------------------------------------GACAATGC--CACCAA---------------TGGCAAC---AGCCATGGCA-----------------------------------------------------------------------------------------------------------------------------ACGGCAACAACAGCAGCA--------------------------------------------------------------------------------------------------A---------C-----------------------AACCAGCACAAAAGACAGCTAAC--GA----------------------------------------------------------------------------ACGCCAAGCAAGACAATGAGGACATGTTGAAAAG--------CAAAAATTATTTCAAT---AGTAAAAA----------------------------------------------------------------------------CAAAAGTATAGCAGCG--------------------GCAGCCGCA------------------AATGCAGCAGCA---GC---------------------------------------------------A------------GCAG-C
droSim2 3r:21539608-21539803 + ------------------AG--------------------AAGC----CAG---------------AAG---------AAAAT---------------------------------------------------------GTGTCTTGGAAAATGGAAAAGCACGA---GCA-----------------------------------------------GC---AGCTATAACATTGAGC-C-------AG------TGATGTAATACAGAGCAAAAG-TGAAGCGG-------------------------------------------------------------------------------------CG-------------------------------------------------------------------------------------------------------------------------------GCAAT---T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCATTGCAAAAAAGAAACAGATTATACAATTTGTGTTGCTG-------------------------C-TGCACTGAACTAGGACAACAGCAGCAACA------------------ACAGCAGCACTT---GG---------------------------------------------------A------------GCGG-C
droSec2 scaffold_0:6152490-6152695 + ------------------AA--------------------AACC----AGC--------------------------------------------------------------------AC---------AACAACAAGCCCACGTGGT-------------------------------------ATTGCCGCAGCCGCAGCAATCTTCGTTGCTGCAGC---AATCGCAGCAGAGTC----------AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCCCTTGGCTGTTATAGCAGCAG---------CAGCTGCT-----------------------G------------------------------CG--------------------------------------------------------------------------------------------CA----GCAGCC-----------------------------------CATGGCCACCTATTTTGT-------------------------------------T---------------------CGACAACC--------------------GCAGCAACAGCAACAACAGCAATCGCCAA------AGCC---GC---------------------------------------------------AAGCGCTTGTGGCACAA-C
droYak3 3L:6409756-6409952 - ------------------CA--------------------GCAA----C------------------------------ATGT---------------------------------------------------------GTGTTGTCGTCGTCGGCGACGACGC------------------AGCAGCTG--CAGCTG---------------CAGCAGC---ATCTGCAGCA-----------------------------------------------------------------------------------------------------------------------------ACAGCAACAGCAGCAGCA--------------------------------------------------------------------------------------------------G---------C-----------------------TTCC------------------------------------------------------------------------------------------------------------AAGATTATGGGAAGGCAGTGCC----GAAGAAA-----GCAGCTACTATATACCACTGAGTTCGGATAA------------------------------------------------------------C------GGCAGCGGGAGCAGTG--------------------AAAGCGCCG------------------AGAGCAGCAGCA---GC---------------------------------------------------A------------GTAG-C
droEre2 scaffold_4929:3967484-3967635 - ------------------GC--------------------GGCG------------------------------------------------------------------------GCGGCGGCAGC---A--------------------------------------GCA-----------------------------------------------GC---AGCAGCGGCATTAACC-C----------------------------------------------------------AATGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAA---------C-----------------------ATTCAGCA------------------------------CGCGCCAA---------------------------------------------------------------------------------------T----CTAACGAACCAACCCACC----------------------------AT------CGCCA-------------------------------------CTG-------------------------C-CAGCTCCAGCAACAACTACAACAACAACC---------------ACTTGAACAACAGCC---AC---------------------------------------------------A------------CCAC-C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
NNNNNNNNNNNNNNNNNNCTGTTTAATATATTGTGTTAAAAACC----AAA--------AAGACAAAAA---------TAAGTGTGTTCTGCCCGCTGGTAC-TGGAAGTGCCGCTGCTGCG-------------------------------------------------------------------------------------------------GC---ACCCGCAACAAAGAAG-T-------AA------GA----------------------------GGCC--------AAGTCT--------GAAAATAACGCCATGGGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------CGCTCTCT---------------------------------------------------------------------------------------T----CGAATAAACCAACCTACTTCAACATTCGTATGTACTAAGCTTA------------------------------------------------------------C------GAAAACAACAACAGCA--------------------GCGACGGCA------------------AGAACAACAGCA---AC---------------------------------------------------C------------ACGA-ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................CGCAACAAAGAAG-T-------AA------GA----------------------------GGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.051000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTACTTCAACATTCGTATGTA..................................................................................................................................................................................................................................23200.051100000
........................................................................................................................................................................................................................................................................................................................................GGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------CGCTCTCT---------------------------------------------------------------------------------------T----CGAATA..............................................................................................................................................................................................................................................................20200.051100000
droVir3
------------------AC--------------------CAAA----AAG---------------AAGAAACCAAAGAAACAGCGCGCCGTCACCATGGAT-----G--------------------------------------------------A--------------------------------------------------------TGCGGC---CGTTGCGGCA-----------------------------------------------------------------------------------------------------------------------------GCGGCAACAACT-------------------------------------------------------------------------------------------------GGCGGCAA---------T-----------------------TTGCAGCGCATGCAACAGATA---------------------------------ACCAAATCAGCATCG-------------------------------------TCC---AACATGATGTCACAGCGTTTGCGCAG-C------------------------------AACATGGATTA------------------------------------------------------------C------TACAACAATAGCAGCA--------------------GCAGCAGCA------------------ACAACAACAGCA---AC---------------------------------------------------A------------ACAA-CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------------------------------------TCC---AACATGATGTCACAGCGTTTGC........................................................................................................................................................................................................................................................................2612.002001000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATA---------------------------------ACCAAATCAGCATC..........................................................................................................................................................................................................................................................................................................................................1912.002000000000000011000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATA---------------------------------ACCAAATCAGCATC..........................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGTCACAGCGTTTGC........................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
............................................................................................CACCATGGAT-----G--------------------------------------------------A--------------------------------------------------------TGCGGC---CGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------------------------------------TCC---AACATGATGTCACAGCGTT...........................................................................................................................................................................................................................................................................2311.001000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------T-----------------------TTGCAGCGCATGCAACAGATA---------------------------------........................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000001000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGATA---------------------------------ACCAAATCAGCATCG-------------------------------------T...................................................................................................................................................................................................................................................................................................2611.001000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAA---------T-----------------------TTGCAGCGCATGC.................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGATA---------------------------------ACCAAATCAGCATCG-------------------------------------TC..................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCAGCATCG-------------------------------------TCC---AACATGAT......................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGATA---------------------------------ACCAAATCAGCATC..........................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-------------------------------------TCC---AACATGATGTCACAGCGTT...........................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGTCACAGCGTTTGCGC......................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
.................................................................................................TGGAT-----G--------------------------------------------------A--------------------------------------------------------TGCGGC---CGTTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATA---------------------------------ACCAAATCAGCATCG-------------------------------------TCC---..............................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................CACCATGGAT-----G--------------------------------------------------A--------------------------------------------------------TGCGGC---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000010000000000000000000000000000
..........................................................................................GTCACCATGGAT-----G--------------------------------------------------A--------------------------------------------------------TGCGGC---C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGATGTCACAGCGTTTGCGC......................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA---------------------------------ACCAAATCAGCATCG-------------------------------------TCC---AACATGAT......................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATA---------------------------------ACCAAATCAGCATCG-------------------------------------TCC---AACA..........................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000001000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGATGTCACAGCGTTTGC........................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGGATTA------------------------------------------------------------C------TACAACAATAGCAGC.......................................................................................................................................2711.001000000000000000000000000000000001000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA--------------------GCAGCAGCA------------------ACAACAACAGCA---........................................................................24200.102002000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATAGCAGCA--------------------GCAGCAGCA------------------.......................................................................................21180.061000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATAGCAGCA--------------------GCAGCA............................................................................................................19200.051000000000100000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------------------GCAGCAGCA------------------ACAACAACAGCA---........................................................................23200.051000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------------------ACAACAACAGCA---AC---------------------------------------------------A------------......21200.051000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------GCAGCAGCA------------------ACAACAACAGCA---........................................................................22200.051000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA--------------------GCAGCAGCA------------------ACAAC..................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA------------------ACAACAACAGCA---AC---------------------------------------------------C------------......23200.051100000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA--------------------GCAGCAGCA------------------ACAAC..................................................................................20200.051000000000000000000100000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAATAGCAGCA--------------------GCAG..............................................................................................................19200.051000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------GCAGCAGCA------------------ACAACAACAGCA---AC---------------------------------------------------A------------......25200.051000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------GCAGCAGCA------------------ACAACAACAGCA---AC---------------------------------------------------A------------AC....27200.051000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGCA--------------------GCAGCAGCA------------------AC.....................................................................................20200.051000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCAGCA--------------------GCAGCAGCA------------------.......................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
------------------AA--------------------AAAA----CAA---------------GAA---------------GGC------------------------------------------------------------------------------------------------AAAAACAA--CAGTAA---------------CAGTAAC---ATCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------ACAGCAACAGCAGCAGCAGCAGCAAACAACAAGCTAAAA-ATGCCGTCAAATGCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACACGTTTAAATGT------------------------------------------------------------------------------------CAAAATGTAACTCCGCAGAC------GGCAACAACAGCAACA--------------------GCAGTAGCA------------------GCAGCAAGAGTA---AC---------------------------------------------------A------------ACAG-CSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
------------------AA--------------------AACA----ACA--------------------------------------------------------------------AC---------A-------------------------------------------------------------------------------------------------A-----------------------------C--------------AACGATAAGCGCAG----------------------------CT------------GCA---------ACATCTACAACTGTTCCCTCAACCGGA-----------------------------------------------------------------------------------------------------------GCAGCAGCAGCAGCAGCTGG--AACAGCAACAACGACCAGCAGCAAGAA-ACTTACCGAGCATGATATTCAAGAGCGTTTGCTATCCTTCCATGCAGCCAACATTTCGTATTTGCAATCTCAGAATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGCA------------------AGTTCCTCCACT---AC---------------------------------------------------T------------ACATCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG--AACAGCAACAACGACCAGCAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG--AACAGCAACAACGACC..........................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGAGCATGATATTCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................2111.00100001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAAGAA-ACTTACCGAGCATGAT..............................................................................................................................................................................................................................................................................................................................................................................2711.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTCAAGAGCGTTTGCTATC..........................................................................................................................................................................................................................................................................................................................................................2311.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCTGG--AACAGCAA..................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTCAAGAGCGTTTGCT.............................................................................................................................................................................................................................................................................................................................................................2011.00100100
.................................................CA--------------------------------------------------------------------AC---------A-------------------------------------------------------------------------------------------------A-----------------------------C--------------AACGATAAGCGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACCAGCAGCAAGAA-AC............................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAAGAA-ACTTACCGAGCA..................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAAGAA-ACTTACCGAGCATG................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
dp5
------------------TC--------------------TGCC----AGC---------------T---------------------------------CG-AGGAAGAGGCGCGGCAACG-------------------------------------------------------------------------------------------------GC---AACGGCA---------TGGAGAACGAC------AG----------------------------GGAC--------AAGTCGGTTGAGCCCAAAGTAGAGCCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------GGCCAGGA------------------------------CGCGCAGC---------------------------------------------------------------------------------------T----CCAGGCAGCAGACCAAGA----------------------------CC------CTCGACGTCCCATTGGGGGAAGAGCCATTACAGCGGGA----------------------GCCGCAGCAGCA--------------------GCCACAGGC------CTTGCCCACG--CCAACGCCAACGGCGAC-----------------------------------------------------------------CAC-TSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACAGCGGGA----------------------GCCGCAGC..........................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................TAGAGCCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------GGCCAGGA------------------------------CGCGCAGC---------------------------------------------------------------------------------------T----....................................................................................................................................................................................................................................................................2711.0010000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGA------------------------------CGCGCAGC---------------------------------------------------------------------------------------T----CCAGGCAGCAGACC......................................................................................................................................................................................................................................................2711.0010000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGGAAGAGCCATTACAGCGGGA----------------------GCC...............................................................................................................................................2811.0010001000000
................................................................................................................................................................................................................................AACGGCA---------TGGAGAACGAC------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGA----------------------------CC------CTCGACGTCCC...................................................................................................................................................................................................2111.0010100000000
droPer2
------------------TA--------------------CTGC----AAC-------------------------------------------------------------------------------A--------------------------------------CCAACGGAAGACAAA-----------------------------------AA---ATCAACA---------CCAA--------------A----------------------------AACCACGAAGGCTTCA--------------------------CCAACGATTTCACCCAAA---------AATTCAACTACAACGACA----------------------------------------------------------------ACA----------------------------------T---------CAA--------------------------------------------------------------------------------------------------------------------AGGTGAAA--------------------------------------------------------------------------TTAC------------------------------------------------------------CAAAAACTACAACAGAAAAGATA--------------------TTATCAACA------------------GCTGTGTCAACA---AC---------------------------------------------------C------------AAGA-CSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
------------------TG--------------------GCAG----C-------------------------------------------------------GGCAGTGTCGCTG---------------------------------------------------------------------------------G---------------CTGTGGC---AGTCACAACATTGTCGCC-------G-------GC----------------------------AGTC--------ATG---------------------------------------------------------------------------------ACCAGCTCGCCAATG-TCGCTGTCATGCATCCAACATACGGCAGTTG----------------------------------CCACAACAACAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACAGCAACA--------------------GCAACAGCA------------------ATAACAACAACA---AC---------------------------------------------------A------------GCAG-TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................CAACATTGTCGCC-------G-------GC----------------------------AGTC--------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCAATG-TCGCTGTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...........................................................................................................................................................................................................................................TGTCGCC-------G-------GC----------------------------AGTC--------ATG---------------------------------------------------------------------------------ACCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
............................................................................................................................................................................................................................................GTCGCC-------G-------GC----------------------------AGTC--------ATG---------------------------------------------------------------------------------ACCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
............................................................................................................................................................................................................................................GTCGCC-------G-------GC----------------------------AGTC--------ATG---------------------------------------------------------------------------------ACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACAGCAACA--------------------GCAAC.............................................................................................................21110.091010000
droBip1
------------------AG--------------------ATAC-------------------------------------TT---------------------------------------------------------TTGTCGCAGCTGCTGGCAATGGCAGC---ACA-----------------------------------------------GCTGTGACATCG---------TCAAGAATCACAAGCCC------------------------------------------TTGACC--------CGCA------------------------------------------------------ACTCCA--------------------------------------------------------------------------------------------------A---------G-----------------------TCAC------------------AGAGCCTTGTGGGCATCGGTCCATCCCAGTCAACCGTATCGCTGCCGTCGTACCCTCGCAGTGTAAGTGGCGAAAATAAGA--------------------------------------------------------------------------T-----------------------------------------------------------------------------CCCTCAACA--------------------CCAGCACCA------------------GAACAATCACCA---GA---------------------------------------------------T------------TCAA-ASizeHit CountTotal NormTotal
No Reads
droKik1
------------------GC--------------------CAGA----TGG---------------T---------------------------------TG-AGGAAGCGGCTCTGCAGCA-------------------------------------------------------------------------------------------------GC---ATCTCCAACAAATCAC-G-------G-------GC-----------------AG-CGAAGCGT-------------------------------TGGCGCCAT----------------------------------------------TGTTGCTTCAGTTAGTGGGCCAAACTGTG----------CC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTGGCA--------------------GCAGAAACA------------------GCAACAGCAGCC---AC---------------------------------------------------A------------GCAA-CSizeHit CountTotal NormTotal
No Reads
droFic1
------------------GT--------------------TCAAAATCAACGCCTGACAATGACAAAAG---------CAGCGACGTGGCGCCCCAAAATAA--------------------------------------------------------C-----------------------------------------------------------------AGCAG-----------------------------T-------------------------------------GGCAGCA--------------------------GCAGCAGCAGCAACTGAA---------GGAGCAGCAACAACAGCA----------------------------------------------------------------ACAGCAGTGCCAGGAG-------------------------------CAAC-----------------------------------------------------------------------------------------------------------------------------ACCAATCAAAA-----------------------------------------------------------------------------------------------------------------------------C------AGCAGCAACATCAAGA--------------------GCAGCAGCA------------------ACTGCAACTGCA---ACGAAAGCAATAACAATCAATGGGCCCCAAACGACATGGCGACGTCAACGAGGC------------TGCA-ASizeHit CountTotal NormTotal
No Reads
droEle1
------------------AG--------------------AAGC----CAG---------------AAG---------AAAAT---------------------------------------------------------ATGTCTTGGAAAATGGAAAAGCCCGAGCAGCG-----------------------------------------------GC---AGCAATAACATTGAGC-T-------AG------TGATGTAATACGGAGCAAAAG-TGAAT-------------------------------------------CG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAT---T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGTTGGAAAAAAGAAACAGATTATACAATTTGTGTTGCTG-------------------------C-TGAAGTGAACTAGGACAACAGCAACAGCA------------------AT------ACTT---TC---------------------------------------------------A------------GC---GSizeHit CountTotal NormTotal
No Reads
droRho1
------------------GG--------------------AAGC----C--------------------------------------------------------------GCGCTGCTGCA-------------------------------------------------------------------------------------------------GC---AACTGCAACAAATCAC-G-------G-------GC-----------------AG-CGAAGCGT-------------------------------TGGCGCCAT----------------------------------------------TGTTGCAGGAGTTAATAGGCCAAACTGTG----------CCA----------------------------------------AATTGGCAGGCACAGCAGAAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCAGCA--------------------GCAACAACA------------------GCAACAGCAGCA---AC---------------------------------------------------A------------ACCA-ASizeHit CountTotal NormTotal
No Reads
droBia1
------------------GT--------------------TGCT-----GC---------------T---------------------------------GG-AAGAAG-AACTCAGCGGCA---GCAACAGCAACAACCAAGCCAGGAACA-------------------------------------------------------------------AC---AGCAA-----------------------------C--------------AACACCAACAGCAG----------------------------CA------------GCA---------ACACTCAC-------------------------------------------------------------------------AGCAGCAACAACATAAG-------------------------------CA---ACAGCAACAGCAACA-------------------------------------------------------------------------------------------------------------------------------------------------------CC----AAAGCC-----------------------------------AG------------------------------------------------------------C------AGCAACAACGACACTA--------------------GCAGCAACA------------------GCAACAACAGCA---AC---------------------------------------------------A------------TCAG-CSizeHit CountTotal NormTotal
No Reads
droTak1
------------------GC--------------------CACA------------------------------------------------------------------------GATGCAGCAAC---A--------------------------------------ACA-----------------------------------------------AC---AGGA------------------CTTTCAAAACC------------------------------------------AAGTCC--------AGCA------------ACG---------ACAACAGCATCAAAACCAACAACCACAGCA-------------------------------------------------------------------G-------------------------CCATACC---------AACAACAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------C------CAAACCAACAACAGCA--------------------GCCAAACCA------------------ACAACAACAGCA---GT---------------------------------------------------A------------ATAC-CSizeHit CountTotal NormTotal
No Reads
droEug1
------------------CA--------------------AACG----------------------------------TAGCGGTGCCTTGCCCGCCAGCAACAGGCAGCA----------------------------------------------------------GCA-----------------------------------------------GC---AGCAGCAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTGCACAACGGCAATGGCAGTCAGAAT------------CC--CT----------------------------------------------------------------------------TCATCAAGGAGAACTACTGGAACACGCCGCC----CACAAGAGCCAGTCTGCTGCTCCATTCGCCTACGGAGT---------------------------------------------------------------------------ACTCTGAGGAGCA--------------------GCAGCAGCA------------------GCAACAACAACA---AC---------------------------------------------------A------------GCAG-CSizeHit CountTotal NormTotal
No Reads
dm3
------------------AA--------------------AAGA----CAA---------------AGA---------------TAT------------------------------------------------------------------------------------------------GACAATGC--CACCAA---------------TGGCAAC---AGCCATGGCA-----------------------------------------------------------------------------------------------------------------------------ACGGCAACAACAGCAGCA--------------------------------------------------------------------------------------------------A---------C-----------------------AACCAGCACAAAAGACAGCTAAC--GA----------------------------------------------------------------------------ACGCCAAGCAAGACAATGAGGACATGTTGAAAAG--------CAAAAATTATTTCAAT---AGTAAAAA----------------------------------------------------------------------------CAAAAGTATAGCAGCG--------------------GCAGCCGCA------------------AATGCAGCAGCA---GC---------------------------------------------------A------------GCAG-CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCA------------------AATGCAGCAGCA---GC---------------------------------------------------A------------......1923.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000200000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGACATGTTGAAAAG--------AG...........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGGCA-----------------------------------------------------------------------------------------------------------------------------ACGGCAACAACAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTAAC--GA----------------------------------------------------------------------------ACGCCAAGCAAG...........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAT---AGTAAAAA----------------------------------------------------------------------------CAAAAGTATAGC..........................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT---AGTAAAAA----------------------------------------------------------------------------CAAAAGTAGT............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................GCA-----------------------------------------------------------------------------------------------------------------------------ACGGCAACAACAGCAGCA--------------------------------------------------------------------------------------------------A---------G-----------------------..............................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCA------------------AATGCAGCAGCA---GC---------------------------------------------------...................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------------------AATGCAGCAGCA---GC---------------------------------------------------A------------......1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGACATGTTGAAAAC--------TC...........................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCA--------------------------------------------------------------------------------------------------A---------C-----------------------AAC...........................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
droSim2
------------------AG--------------------AAGC----CAG---------------AAG---------AAAAT---------------------------------------------------------GTGTCTTGGAAAATGGAAAAGCACGA---GCA-----------------------------------------------GC---AGCTATAACATTGAGC-C-------AG------TGATGTAATACAGAGCAAAAG-TGAAGCGG-------------------------------------------------------------------------------------CG-------------------------------------------------------------------------------------------------------------------------------GCAAT---T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCATTGCAAAAAAGAAACAGATTATACAATTTGTGTTGCTG-------------------------C-TGCACTGAACTAGGACAACAGCAGCAACA------------------ACAGCAGCACTT---GG---------------------------------------------------A------------GCGG-CSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAACA------------------ACAGCA.................................................................................21120.9211000001100000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAACA------------------ACAGC..................................................................................19200.05100000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAACA------------------ACAGCAGC...............................................................................22200.05100000000000100000
droSec2
------------------AA--------------------AACC----AGC--------------------------------------------------------------------AC---------AACAACAAGCCCACGTGGT-------------------------------------ATTGCCGCAGCCGCAGCAATCTTCGTTGCTGCAGC---AATCGCAGCAGAGTC----------AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCCCTTGGCTGTTATAGCAGCAG---------CAGCTGCT-----------------------G------------------------------CG--------------------------------------------------------------------------------------------CA----GCAGCC-----------------------------------CATGGCCACCTATTTTGT-------------------------------------T---------------------CGACAACC--------------------GCAGCAACAGCAACAACAGCAATCGCCAA------AGCC---GC---------------------------------------------------AAGCGCTTGTGGCACAA-CSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................CGCAGCAGAGTC----------AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCCCTTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAATCGCCAA------AGC............................................................................1811.0010010
....................................................................................................................................................................................................................................GCAGCAGAGTC----------AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTTATAGCAGCAG---------CAGCTGCT-----------------------.......................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
..................................................................................................................................................................................................................................TCGCAGCAGAGTC----------AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..........................................................................................................................................................................................................................AGC---AATCGCAGCAGAGTC----------AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
droYak3
------------------CA--------------------GCAA----C------------------------------ATGT---------------------------------------------------------GTGTTGTCGTCGTCGGCGACGACGC------------------AGCAGCTG--CAGCTG---------------CAGCAGC---ATCTGCAGCA-----------------------------------------------------------------------------------------------------------------------------ACAGCAACAGCAGCAGCA--------------------------------------------------------------------------------------------------G---------C-----------------------TTCC------------------------------------------------------------------------------------------------------------AAGATTATGGGAAGGCAGTGCC----GAAGAAA-----GCAGCTACTATATACCACTGAGTTCGGATAA------------------------------------------------------------C------GGCAGCGGGAGCAGTG--------------------AAAGCGCCG------------------AGAGCAGCAGCA---GC---------------------------------------------------A------------GTAG-CSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................CGGCGACGACGC------------------AGCAGCTG--CAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAA-----GCAGCTACTATATACCA.......................................................................................................................................................................................................................................2411.00100000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------------------------------------------------------------------------------------------AAGATTATGGGAAGGCAGTGCC----GAA.................................................................................................................................................................................................................................................................2611.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAGCAGCA--------------------------------------------------------------------------------------------------G---------C-----------------------T.............................................................................................................................................................................................................................................................................................................................................................................................................2180.13101000000000
....................................................................................................................................................................................................................................GCAGCA-----------------------------------------------------------------------------------------------------------------------------ACAGCAACAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
....................................................................................................................................................................................................................................GCAGCA-----------------------------------------------------------------------------------------------------------------------------ACAGCAACAGCAGCAGCA--------------------------------------------------------------------------------------------------G---------C-----------------------..............................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
........................................................................................................................................................................................................................................CA-----------------------------------------------------------------------------------------------------------------------------ACAGCAACAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
droEre2
------------------GC--------------------GGCG------------------------------------------------------------------------GCGGCGGCAGC---A--------------------------------------GCA-----------------------------------------------GC---AGCAGCGGCATTAACC-C----------------------------------------------------------AATGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAA---------C-----------------------ATTCAGCA------------------------------CGCGCCAA---------------------------------------------------------------------------------------T----CTAACGAACCAACCCACC----------------------------AT------CGCCA-------------------------------------CTG-------------------------C-CAGCTCCAGCAACAACTACAACAACAACC---------------ACTTGAACAACAGCC---AC---------------------------------------------------A------------CCAC-CSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................GCGGCGGCAGC---A--------------------------------------GCA-----------------------------------------------GC---AGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.0711000000
..........................................................................................................................GCAGC---A--------------------------------------GCA-----------------------------------------------GC---AGCAGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100
............................................................................................................................AGC---A--------------------------------------GCA-----------------------------------------------GC---AGCAGCGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010

Generated: 05/17/2015 at 10:08 PM