ID:

dmo_354

 Coordinate:

scaffold_3030:573-723 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.3 -10.2 -10.2

Flybase annnotation

CDS [Dmoj\GI21352-cds]; exon [dmoj_GLEANR_6169:2]; intron [Dmoj\GI21352-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus+
mature
star
  1. scaffold_121:937-957 +
  2. scaffold_356:12-32 +
  3. dmo_354  scaffold_3030:684-704 +
  4. scaffold_3249:1151-1171 +
  5. scaffold_5024:4575-4595 +
  6. scaffold_5732:5535-5555 +
  7. scaffold_5848:406-426 +
  8. scaffold_6453:6210-6230 +
  9. scaffold_6496:25707506-25707526 +
  10. scaffold_6498:1431224-1431244 +
  11. scaffold_6498:2272651-2272671 +
  12. scaffold_6498:2950100-2950120 +
  13. scaffold_6540:10121884-10121904 +
  14. scaffold_6540:17257060-17257080 +
  15. scaffold_6541:130477-130497 +
  16. scaffold_6541:144640-144660 +
  17. scaffold_6553:3580-3600 +
  18. scaffold_6648:1517-1537 +
  19. scaffold_6680:23855624-23855644 +
  20. scaffold_6680:24721675-24721695 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTGCATTACTTGTAGTGGTGGTTATTACAGGATTATTTTCATACTTTCAGGTAAATATATATGTAGAACAGTTTTTATACCCTGAACCCATTATCAATGGGAAATCAGGGTATAATGGTTTTGTTGAAATGTATGTAACAGGGAGTTGGAGGCGTGGCAGACCCCACAAAGTATATATATTCTTGATCAGGTTGACGAGCTGAGTTGATTTGGCCCTGTCCATCTGTCTGTCTGTCCGTCTGTCCGTATGC
***************************************************************************************************************************....((((((((((...(((.(((............))))))......)))))))))).********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V056
head
 V049
head
 V041
embryo
 V110
male body		 M046
female body
 M060
embryo
......................................TAATACTTTCAGGTAAATATGT............................................................................................................................................................................................... 22 2 2 3.00 6 2 3 0 1 0 0
......................................TAATACTTTCAGGTAAATATG................................................................................................................................................................................................ 21 2 2 2.00 4 2 2 0 0 0 0
......................................TAATACTGTCAGGTAAATATATA.............................................................................................................................................................................................. 23 2 1 2.00 2 2 0 0 0 0 0
......................................TAATACTTTCAGGTAAATATTTC.............................................................................................................................................................................................. 23 3 3 1.67 5 0 3 2 0 0 0
......................................TCATACTTTCCGGTAAATATGTC.............................................................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0
......................................TAATACTTTCAGGTAAATATTT............................................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
......................................TCATACTTTCAGGTAAATATGTCC............................................................................................................................................................................................. 24 3 1 1.00 1 0 0 1 0 0 0
......................................TAATACTTTCAGGTAAATATCT............................................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
......................................TCATACTTTCAGGTAAAGATGT............................................................................................................................................................................................... 22 2 2 1.00 2 1 1 0 0 0 0
......................................TCATACTTTCAGGTAAAGATGTA.............................................................................................................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
......................................TCATACTTTCAGGCAAATATTTC.............................................................................................................................................................................................. 23 3 1 1.00 1 0 1 0 0 0 0
......................................TCATAGTTTCAGGTAAATATGT............................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
......................................TCATACTGTCAGGTAAATGTC................................................................................................................................................................................................ 21 3 1 1.00 1 0 0 0 1 0 0
......................................TAATACTTTCAGGTAAATATTTA.............................................................................................................................................................................................. 23 2 1 1.00 1 0 1 0 0 0 0
......................................TCATACTTTCCGGTAACGATATA.............................................................................................................................................................................................. 23 3 1 1.00 1 0 0 1 0 0 0
......................................TAATACTTTCAGGTAAATATGTA.............................................................................................................................................................................................. 23 2 1 1.00 1 0 1 0 0 0 0
......................................TAATACTTTCAGGTAAATATATCA............................................................................................................................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
......................................TCATACTTTCAGGTAAAGATTTC.............................................................................................................................................................................................. 23 3 2 1.00 2 1 1 0 0 0 0
......................................TAATACTGTCAGGTAAATATCTA.............................................................................................................................................................................................. 23 3 2 1.00 2 1 1 0 0 0 0
......................................TCATACTGTCAGGTAAATATTTC.............................................................................................................................................................................................. 23 3 2 1.00 2 1 1 0 0 0 0
......................................TCATACTTTCAGGTAAAGATTTCT............................................................................................................................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
......................................TAATACTTTCAGGTAACTATAT............................................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
......................................TAATACTTTCAGGTAAATATCTC.............................................................................................................................................................................................. 23 3 4 1.00 4 1 3 0 0 0 0
......................................TCATACTCTGAGGTAAATATCT............................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
......................................TCATACTTTCAGGTAAACATGT............................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
......................................TCATACTGTCAGGTAAATATG................................................................................................................................................................................................ 21 2 2 1.00 2 2 0 0 0 0 0
......................................TCATACTTTCAGGTACAGATTTA.............................................................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0
......................................TCATACTTTCAGGTAAAGATTT............................................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................TTGAAATGTATGTAACAGGGAGT......................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0
......................................TAATACTGTCAGGTAAAAATATA.............................................................................................................................................................................................. 23 3 4 0.75 3 1 2 0 0 0 0
......................................TAATACTTTCCGGTAAATATGTA.............................................................................................................................................................................................. 23 3 2 0.50 1 0 0 1 0 0 0
......................................TAATACTTTCCGGTAAAGATAT............................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
......................................TCATCCTTTCAGGTAAAGATGT............................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
......................................TCATCCTTTCCGGTAAATATT................................................................................................................................................................................................ 21 3 2 0.50 1 0 1 0 0 0 0
......................................TAATACTTTCAGGAAAATATATC.............................................................................................................................................................................................. 23 3 4 0.50 2 0 2 0 0 0 0
......................................TCATCGTTTCAGGTAAATATGT............................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
......................................TCATACTGTCAGGTAAGTATGT............................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
......................................TAATACTCTCCGGTAAATATATA.............................................................................................................................................................................................. 23 3 2 0.50 1 1 0 0 0 0 0
......................................TAATACTTTCAGGTAAATATGTCT............................................................................................................................................................................................. 24 3 2 0.50 1 1 0 0 0 0 0
......................................TAATACTGTCAGGTAAATATAGA.............................................................................................................................................................................................. 23 3 2 0.50 1 1 0 0 0 0 0
......................................TCATACTGTCAGGTCAATATGT............................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0
......................................TCATACTTTCAGTTAACTATGTA.............................................................................................................................................................................................. 23 3 2 0.50 1 0 1 0 0 0 0
......................................TCATACTTTCAGTTAAAGATGT............................................................................................................................................................................................... 22 3 4 0.50 2 1 1 0 0 0 0
......................................TCATACTTTCATGTAAAGATGT............................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0
......................................TAATACTTTCAGGTAAATATTTCT............................................................................................................................................................................................. 24 3 2 0.50 1 1 0 0 0 0 0
......................................TAATACTTTCAGGTAAATACGT............................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0
......................................TCATACTGTCAGGTCAATATG................................................................................................................................................................................................ 21 3 2 0.50 1 1 0 0 0 0 0
......................................TAATACTTTCAGGTAAAGATAT............................................................................................................................................................................................... 22 2 2 0.50 1 0 1 0 0 0 0
......................................TCATACTTTCAGGTAACGATGT............................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0
......................................TAATACTATCAGGTAAATATATC.............................................................................................................................................................................................. 23 3 2 0.50 1 0 1 0 0 0 0
......................................CAATACTTTCAGGTAAATATGTA.............................................................................................................................................................................................. 23 3 2 0.50 1 1 0 0 0 0 0
......................................TCATACTTTCAGGTCAAGATG................................................................................................................................................................................................ 21 3 3 0.33 1 1 0 0 0 0 0
......................................TAATCCTTTCAGGTAAATATGT............................................................................................................................................................................................... 22 3 6 0.33 2 0 2 0 0 0 0
......................................TCATACTGTCAGGTAAATATGTG.............................................................................................................................................................................................. 23 3 3 0.33 1 1 0 0 0 0 0
......................................TAATACTTTCAGGTACATATGTA.............................................................................................................................................................................................. 23 3 3 0.33 1 1 0 0 0 0 0
......................................TCATACTGTCAGGTAAATATGC............................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0
...........................................................................................................................TTGAAGTGTGTGTAACGGGGAGTT........................................................................................................ 24 3 3 0.33 1 0 0 0 1 0 0
......................................TCATACTTTCAGTTAAATATGTC.............................................................................................................................................................................................. 23 3 3 0.33 1 0 1 0 0 0 0
......................................TCATACTGTCAGGTAAATCTGT............................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0
......................................TAATACTTTCAGGGAAATATGT............................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0
......................................TAATACTTTCAGGTAAATATGTAA............................................................................................................................................................................................. 24 3 3 0.33 1 1 0 0 0 0 0
......................................TAATACTTTCAGGAAAATATGTA.............................................................................................................................................................................................. 23 3 3 0.33 1 1 0 0 0 0 0
......................................TAATACTTTCAGGTAAAGATTTA.............................................................................................................................................................................................. 23 3 3 0.33 1 0 1 0 0 0 0
......................................TCATACTTTCCGGTAAATCTGT............................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0
......................................TCATACTGTCAGGCAAATATTT............................................................................................................................................................................................... 22 3 3 0.33 1 0 1 0 0 0 0
......................................TCAGACTTTCAGGTAAATATGTG.............................................................................................................................................................................................. 23 3 3 0.33 1 0 1 0 0 0 0
......................................TCATACTGTCAGGTAAACATT................................................................................................................................................................................................ 21 3 4 0.25 1 1 0 0 0 0 0
......................................TAATACTGTCAGGTAAATATAT............................................................................................................................................................................................... 22 2 4 0.25 1 1 0 0 0 0 0
......................................CCATACTGTCAGGTAAATATGT............................................................................................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0
......................................TAATACTTTCCGGTAAATATGT............................................................................................................................................................................................... 22 3 4 0.25 1 0 1 0 0 0 0
......................................TAATACTGTCAGGTAAATATTTA.............................................................................................................................................................................................. 23 3 4 0.25 1 1 0 0 0 0 0
......................................TAATACTTTCAGGTAAATACCT............................................................................................................................................................................................... 22 3 4 0.25 1 0 1 0 0 0 0
......................................TAATACTGTCAGGAAAATATAT............................................................................................................................................................................................... 22 3 8 0.25 2 0 2 0 0 0 0
......................................TAATACTTTCAGTTAAAGATATA.............................................................................................................................................................................................. 23 3 5 0.20 1 0 1 0 0 0 0
......................................TAATACTTTCAGGTAACTATGT............................................................................................................................................................................................... 22 3 5 0.20 1 0 1 0 0 0 0
......................................TAATACTGTCAGGTAAATACAT............................................................................................................................................................................................... 22 3 5 0.20 1 0 1 0 0 0 0
......................................TAAGACTTTCAGGTAAATATGT............................................................................................................................................................................................... 22 3 6 0.17 1 1 0 0 0 0 0
.......................................................................................................................TTTGTTGAAATATATGTAACAGGGAGT......................................................................................................... 27 1 6 0.17 1 0 0 0 0 0 1
......................................TAATACTTTCAGTTAAATATATC.............................................................................................................................................................................................. 23 3 7 0.14 1 1 0 0 0 0 0
......................................TAATACTTTCAGGTACATATG................................................................................................................................................................................................ 21 3 7 0.14 1 0 1 0 0 0 0
......................................TAATACTTTCAGGAGAATATAT............................................................................................................................................................................................... 22 3 7 0.14 1 0 1 0 0 0 0
......................................TAATACTGTCAGGTGAATATAT............................................................................................................................................................................................... 22 3 7 0.14 1 1 0 0 0 0 0
......................................TGATACTTTCAGGAAAATGTAT............................................................................................................................................................................................... 22 3 8 0.13 1 0 1 0 0 0 0
......................................TAATACTTTCAGGAAAATATGT............................................................................................................................................................................................... 22 3 9 0.11 1 0 1 0 0 0 0
......................................TAATACTTTCATGTAAATATATC.............................................................................................................................................................................................. 23 3 9 0.11 1 1 0 0 0 0 0
......................................TAATACTTTCACGTAAATATG................................................................................................................................................................................................ 21 3 10 0.10 1 0 1 0 0 0 0
.......................................................................................................................................................................................................CTGAGTTGATTTGGCCCTGTCCATC........................... 25 0 11 0.09 1 0 0 0 0 1 0
......................................TAATACTGTCATGTAAATATATA.............................................................................................................................................................................................. 23 3 11 0.09 1 0 1 0 0 0 0
...........................................................................................................................................................................................................GTTGATTTGGCCCTGTCCATCTGTCTG..................... 27 0 12 0.08 1 0 0 0 0 1 0
........................................................................................................................................................................................................TGAGTTGATTTGGCCCTGTCCA............................. 22 0 14 0.07 1 0 0 0 1 0 0
......................................TAATACTTTCAGGAAAATATG................................................................................................................................................................................................ 21 3 16 0.06 1 0 1 0 0 0 0
........................................................................................................................................................................................................TGAGTTGATTTGGCCCTGTCCAA............................ 23 1 19 0.05 1 0 0 0 0 1 0
..................................................................................................................................................................................................................TGGCCCTGTCCATCTGTCTGT.................... 21 0 20 0.05 1 0 0 0 0 0 1
.................................................................................................TGGGAAATCAGGGTATAATGGTTT.................................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................TCTGTCTGTCTGTCCGTCTGT........ 21 0 20 0.05 1 0 0 0 1 0 0
...................................................................................................................................................................................................................................CTGTCTGTCCGTCTGTCCGTA... 21 0 20 0.05 1 0 0 0 0 0 1
............................................................................................AGCCATGGGAAATCAGGGTATAATGG..................................................................................................................................... 26 2 20 0.05 1 0 0 0 0 1 0
.........................................................................................................................................................................................................GAGTTGATTTGGCCCTGT................................ 18 0 20 0.05 1 0 0 0 0 1 0
.................................................................................................................................................................CCCCACAAAGTATATATATTC..................................................................... 21 0 20 0.05 1 0 0 0 0 1 0
.................................................................................................................................................................................................................TTGGCCCTGTCCATCTGTCTG..................... 21 0 20 0.05 1 0 0 0 0 1 0
..................................................................................................................................................................................................................TGGCCCTGTCCATCTGTCTGTC................... 22 0 20 0.05 1 0 0 0 0 0 1
......................................TAATACTCTCAGGTAAATC.................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0
...........................................................................................GATCAACGGGGAATCAGGGT............................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 1
...................................................................................................................................................................................................CGAGCTGAGTTGATTTGGCCC................................... 21 0 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

GACGTAATGAACATCACCACCAATAATGTCCTAATAAAAGTATGAAAGTCCATTTATATATACATCTTGTCAAAAATATGGGACTTGGGTAATAGTTACCCTTTAGTCCCATATTACCAAAACAACTTTACATACATTGTCCCTCAACCTCCGCACCGTCTGGGGTGTTTCATATATATAAGAACTAGTCCAACTGCTCGACTCAACTAAACCGGGACAGGTAGACAGACAGACAGGCAGACAGGCATACG
*********************************************************************....((((((((((...(((.(((............))))))......)))))))))).*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
................................................................................................................................................AAAACTCCGCACCGTCTGGGGTGTTT................................................................................. 26 2 1 3.00 3 3 0 0
..................................................................................................................................................ACCTCCGCACCGTCTGGGGTGTTT................................................................................. 24 0 13 2.15 28 25 2 1
.................................................................................................................................................AACCTCCGCACCGTCTGGGGTGTTT................................................................................. 25 0 1 2.00 2 2 0 0
................................................................................GGACTTGGGTAATAGTTACCCTTTAGT................................................................................................................................................ 27 0 5 1.20 6 5 1 0
................................................................................................................................................AAACCTCCGCACCGTCTGGGGTGTTT................................................................................. 26 1 1 1.00 1 1 0 0
.................................................................................................................................................AACCTCCGCACGGTCTGGGGTGTTT................................................................................. 25 1 1 1.00 1 1 0 0
.................................................................................................................................................AAACTCCGCACAGTCTGGGGTGTTT................................................................................. 25 2 1 1.00 1 1 0 0
.................................................................................................................................................AAAATCCGCACCGTCTGGGGTGTTTCAT.............................................................................. 28 2 2 0.50 1 1 0 0
................................................................................GGACTTGGGTAATAGTTACCCTTTAG................................................................................................................................................. 26 0 5 0.40 2 2 0 0
...............................................................................................................................................AGAACCTCCGCACCGTCTGGGGTGTTT................................................................................. 27 2 3 0.33 1 1 0 0
...............................................................................................................................................AAAAACTCCGCACCGTCTGGGGTGTT.................................................................................. 26 3 3 0.33 1 1 0 0
..............................................................................................................................................AGAAACCTCCGCACCGTCTGGGGTGTTT................................................................................. 28 3 5 0.20 1 1 0 0
.....................................................................................................................................................................................GAACTAGTCCAACTGCTCGACT................................................ 22 0 6 0.17 1 1 0 0
................................................................................................................................................................................TATAAGAACTAGTCCAACTGC...................................................... 21 0 8 0.13 1 1 0 0
................................................................................GGACTTGGGTAATAGTTACCCTTTACT................................................................................................................................................ 27 1 10 0.10 1 0 1 0
..................................................................................................................................................ACCTCCGCACCGTCTGGGGTGTTTC................................................................................ 25 0 13 0.08 1 1 0 0
..................................................................................................................................................AGCTCCGCACCGTCTGGGGTGTTT................................................................................. 24 1 17 0.06 1 0 1 0
.........................................................................................................................ACAACTTTACATACATTGTCCC............................................................................................................ 22 0 20 0.05 1 1 0 0
..................................................................................................................................................ACCTCCGCACCGTCTTGGGTGTTGC................................................................................ 25 2 20 0.05 1 0 1 0
...............................................................................................................................................................................................................TGAGCCGGGACAGGTAGACAG....................... 21 2 20 0.05 1 1 0 0
..................................................................................................................................................ACCTCCGCACCGTCTGGGGTGCT.................................................................................. 23 1 20 0.05 1 1 0 0
......................................................................................................TTAGTCCCATATTACCAAAACAACTT........................................................................................................................... 26 0 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_3030:523-773 + dmo_354 CTG-CATTAC--TTGTAGTGG------------------------------------TGGTTATTACA------------------------------------------------GGATTATT-----TTC-----------AT-ACTTTC----------AGGTAAATATATA-----------------------------------TGTAGAAC----------A------GTTTTTATACCCTGAACCCATTATCAATGGGAAATC------AGGGTATAATGGTTTTGTTGA-------AATGTATGTAACAGGGAGTTGGAGG-CGTGGCAGACCCCACAAAGTATA--TATATTCTTGATCAGGTTGACGAGCTGAGTTGATTTGGCCCTGTCCATCTGTCTGTC----TGTCCGTCTGTCCGT--------ATGC
droVir3 scaffold_12728:368928-369181 + ATG-CTCTAT--ATATATTGA------------------------------------TACTCGTTTTT------------------------------------------------CGATTATT-----TTA-----------TT-A--------------------AT--T-----C--------CTC-----------TTAGTCGGCG--TGACCA----------G------GTTTTTATACCCTGAACCCATTAGAAA-TGGGTATA------AGAGTATATTGTATTTGTGCAAAATCCAAATGTATGTAACAGGCAGAAGGAAG-CATCGCCGACCCCATAAAGTATA--TATATTCTTGATCAGCATCAATAGCCGAGTCGATCTAGCCATGTCCGTCTGTCTGTC----TGTCCGTCTGTACGT--------ATGT
droGri2 scaffold_14906:223582-223775 + ATT-ATTA-T---T-----------------------------------GTACATTT----------------ACA-------T-----------------------------------------------------------------------------------------------------------------------------------ATA----------T------ATGTTTATACCCTGAACCCATTAAAAATGGGTAAAA------AGGGTAAAATGGTTTTGTGCA-------AATGAATG-AACAGGCAGAAGGATG-CATTTCCGACCCCAGAAAGTATA--TATATTCTTGATCAGGGTCAACAGCCGAGTCGATGTAGCCATGTCCGTCTGTCAGTC----CGTCGGTA-------------------
droWil2 scf2_1100000004961:4680765-4681009 + CTA-CAAATT--TAACA--G----------------------------------------------------CT---------------------------------TTTATCTAAAAGTAATA-----TTC-----------GT-ATTTTA----------AA--AAA--T-----A--------TTCTTAAGGA--A-----TCGACG--T--ACC----------C------ATGTTTATACCATACACCCAT-------AGGGTGAA------ATGGTATATTAAAGTCGCCAA-------AATGTATGTAACAGGCAGAAGGAAG-CATCTCCGACCCCACAAAGTATA--TATATTCTTGATCAGGATCAACAACCGAGTCGATCTAGCTATGTCCGTCCGTCCGTC----CGTCCGTCTGTCCGT--------A---
dp5 Unknown_group_52:3477-3728 + GTG-CATAAT--TTTTAGAGT----TTT---------TAAGTCATAGCAGAGCATTT------ATATATATAGATT-----T-----------------------------------------------------------------------------------------AGTA-----------------------------------TATAGATT----------T------ATATTTATACCCGATACTCAA-------AAGGAGTA----TTGGGGTATATTCGATTTGTGGTGAAAATCGATGTGTGTAACGTCCAGAAGGACGTCATTTCCGACCCCATAAAGTATA--TATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGTCCGTC----CGTCCGTCCGTTCGT--------CCGT
droPer2 scaffold_14:1095148-1095414 + GTG-CTATTT--TTGTTATGT------------------------------------TTGT-GT--------------------------------TAGGG--------------TATTTCATT-----TTC-----------TT-ACTTGTTAGATTTGTACA-------TTTTTAT---------------------------------CTGTGTA----------T------ATTTTTATACCCGATACTCAA-------AATGAGTA----TTGGGGTATATTAGATTTGTGGTGAAAATGGATGTGTGTAACGTCCAGAAGGAAT-CGTTTCCGACCCCATAAAGTATA--TATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGTCCGTC----CGTCCGTCTGTCCGTCTGTCCGTCCCC
droAna3 scaffold_12916:13714805-13715029 + CTA-CTCCGA--AGG----G-----C-------------------------------TG---------------------------------T---CA-----ATCA---AAAGA-------TATAGATTCC--AACAGGTGGGGATA-----------------------T----AA--------------------------------TT----------------TAT--TAGTTTTTATACCCTT-----GC-------A------G------AGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGA-CATCTCCGACCCTATAAAGTATA--TATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTC----TGTCCGTCTGTCTGT--------CTGT
droBip1 scf7180000394236:5821-6053 + CTG-TTTC-T---TAAACTGGTGGTC-T----------------------------------AATTAAATTGTTAT-----TATTTGCCATTA-----------------T-----------------------------------------A-----------TGAATTATTAA-----------------------------------TATTGGGA----------C------GTTTTTATACCCTT-----GC-------A------G------AGGGTATTATAATTTTGTCCA-------AAAGTGTGCAACGCAGTGAAGGAGA-CATCTCCGACCCTATAAAGTATA--TATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTC----TGTCCGTCTGTCCGT--------CTGT
droKik1 scf7180000302500:4128-4348 + CATGCATAAC--TTATA---T--------------------------------AT--CGGCCAGAAAA------------------------------------------------CTAACATT-----TTG-----------GT-ATTTTA----------TG----G--T-----A--------TTTTTAA----------------------GTG----------C------ATTTTTATACCCTT-----G---------------C------AGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGGTGTGAAGGAGA-CGTTTCCGACCCTATAAAGTATA--TATATTCTTGATCAGCATCAACAGCCGAGTTGATCTAGCCATGTCCGTCTGTTCGTC----TGTCCGTCTGTCCGT------------
droFic1 scf7180000454066:853784-854024 + ATT-ATTTAT---T-----------------------------------ATATACTT----C------------------------------------------------ATATCAAAATTATT-----TTT-----------AT-ATTTGT---------ACA----G--T----ATCTG----------TAGAA--GTTTAG---------------TTCC--TCGG------CTTTTTATACCCTT-----GC-------AGAGCA-A------AGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGA-CACCTCAGACCCCATAAAGTATA--TATATTCTTGATCAGCATCACCATCTGAATCGAAATATGTATGTACGTCTGTCCGTC----TGTCCGTCTGTCTGT--------CTGT
droEle1 scf7180000490982:8231-8456 + CCG-CTTTCC--TTTTTT---------TTATGGGCATACACAG------ATATACTT----------------CCA-------T--------------------------------------------------------------A------------------------CATA-----------C----------A------------TT----------------TATATTACTTGTTATACCCTT-----GC-------A------G------AGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGA-CGTTTCCGACCCTATAAAGTATA--TATATTCTTGATCAGCATCACTAGTAGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTCTGTCCGT--------CCGT
droRho1 scf7180000777760:34966-35209 + CTG-CATCAT--TGGT---------C-TTGTTGAAATACAC------------AT-----------------CT---------------------------------TCAATCTAAGA----TT-----TAG-----------CTTAA---------------------TATATATAA--------------------------------TT-TTTAA----------T------ATTTTTATACCCGTTACTCGT-------AGAGTAAA------AGGGTATATTGTATTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAG-CGTTTCCGACCCTATAAAGTATA--TATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTC----TGTCCGTCTGTCCGT--------CTGT
droBia1 scf7180000302116:55457-55696 + TAC-TTGTAG--TTGT-----------------------------------AGATTT----------------GTA-------T------------T-------------TAATA-------TTTAGATTTC--TTAGTTTAGGGCTA-----------------------T----AGCT-------------------------------CTGG----------TTT-----TACTTTTTGTACCCGTTACTCGT-------AGAGTAAA------AGGGTGTACTAGATTCGTCGC-------AAAGTATGTAAGAGGTAGAAGTTAG-CGTTTCCGACCCCATAAAGTATATATATATTCTTGAACCGGATCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCTGTC----TGTCTGTCTGTTCGT--------A---
droTak1 scf7180000414021:8367-8617 + CAA-CATTAC--ATAAACTGG------------------------------------AAAATATTCAG---GGATT-----TTTACA--------------------------------------------------------TT-A---------------CA----A--A----ATTTG----------AAGTACATTTTAG---------------TTCGGGATTT----AAGTTATTATACCCGTTACTCGT-------AGAGTAAA------AGGGTATATTAGATTCGTGCA-------AAAGTATGTAACAGGTAGAAGGAAG-CGTTTCCGACCCCATAAAGTATA--TATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTC----TGTCCGTCTGTCCGT--------CTGT
droEug1 scf7180000408441:6792-7031 + TTG-CGTTAG--ATGTTCCGT------------------------------------GTTTAATTATAACTTAATGTCCCT----------TC---CA-----ATTA---AA----------------------------------------------------------ATATA-----------------------------------TCTATTTC----------T------GTATTTATACCCGTTACTCGT-------AAAGTAAA------AGGGTATATTAGATTCGTTGA-------AAAGTATGTAACAGATAGAAGGGAG-CTTTTGCGACCCTATAAAGTATA--TATATTCTTGATCAGGATCAATAGCGAAGTTGATTGAGCCATGTCCGTCTGTCCGTC----CGTCCGTCCGTCCGT--------CCGT
dm3 chr2R:1081401-1081638 + TA--CACTAT--TTGCTGGGT------------------------------------GAGTTAATATATTTTGATT-----TCTACATCTTTC-----------------A-----------------------------------------A-----------ATAAATATGGA-----------------------------------TACAGTTT----------G------ATTATTATACCCGTTAATCAT-------AGAGTAAAATGGGTATGGTATTCTATATTCGTTG--------AATGTATGTAACAGGTAGAAGGAAG-CTATTCCGATCATATAAGGTATA--AATATTCTTGATCAGGATAAATAGCTGAATCGATCTGGTCATGTCCGTCCGTTCGTC----TGTCTGTC-------------------
droSim2 node_38189:10793-11003 + GTG-ATTA-T---T-----------------------------------ATCGACTT----------------GTCTTATT----------CC---CA-----GATT---ATTTAAAAGTG----------------------------------------------------------------------------------------------ATT----------C------TTAGTTATACCCGTTACTCGT-------AGGCTAAA------AGGGTATACTTTATACGTTGA-------AATATATGTAACAGGTAAAAGGAAG-CATTTCCGACCATACAATATGTA--TATATTCTTGATCAGGATCAATAGTCGAGTCGATCTAGCCATGTACGTCTGTCCGTA----TGTCCGTA-------------------
droSec2 scaffold_6:2600477-2600710 + TAG-TTGTAT--TAATAGTAT--------------------------------------------AAA---GGATT-----TTT--------------------------------CGACACTT-----TTGTGCAAATCCAGCGTAA-----------------------T----ACTTATGGTAA----------A------------TT----------------TAT--GACTTTTCGTACCCGTTACCCTT-------AGAGTAAA------AGTGTATACTAGATACGTTGA-------AAAGTATGTAACAGGCAGAAGGAAG-CGTTTCTGACCATATAAAGTATA--TATATTCTTGATCAGGATCAATAGCTGGTCTGATCTGGACATGTCCGTCTGTCCGTA----TGA------------------------
droYak3 3L:21793030-21793287 + ATT-AAATATAGTAATTATTT-------------------------------------------TATA--------------------------GAATAAG--------------AAATTTATG-----TTT-----------GT-ATTTGAAATAATTATATA-------TAAT-----------------------------------TGTATAACGTTCA--TTCT------ATTTTTATACCCGTTACTCGT-------AGAGTAAA------AGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGCAGAAGGAAG-CGTTTCCGACCATATAAAGTATA--TATATTCTTGATCAGGATCAATAGCCGAATCGATTTGGCCATGTCCGTCTGTCCGTC----CGTCTGTCTGTCCGT--------CTGT
droEre2 scaffold_4690:18583056-18583269 + TTG-CAGTCA--GG-----GT----TTT---------AAAAAA------ATACATTT----------------TCC-------TATATCTTATATAATAATAC-------AAAT-------------------------------------------------------------------------------------------------CA--------------------GAGTTGTTATACCCGTTACTCGT-------AGAGTAAA------AGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGCAGAAGGAAA-CGTTTCCGACCATATAAAGTATA--TATATTCTTGATCAGGATCAATAGCCGAGT------GGCCATGTCCGTCCGTC----------------TGTCCGT--------A---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CTG-CATTAC--TTGTAGTGG------------------------------------TGGTTATTACA------------------------------------------------GGATTATT-----TTC-----------AT-ACTTTC----------AGGTAAATATATA-----------------------------------TGTAGAAC----------A------GTTTTTATACCCTGAACCCATTATCAATGGGAAATC------AGGGTATAATGGTTTTGTTGA-------AATGTATGTAACAGGGAGTTGGAGG-CGTGGCAGACCCCACAAAGTATA--TATATTCTTGATCAGGTTGACGAGCTGAGTTGATTTGGCCCTGTCCATCTGTCTGTC----TGTCCGTCTGTCCGT--------ATGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................TTGA-------AATGTATGTAACAGGGAGT........................................................................................................................2311.001100000
............................................................................................................................................................................................................................................................................................................................................................................................CTGAGTTGATTTGGCCCTGTCCATC.......................................25110.091100000
................................................................................................................................................................................................................................................................................................................................................................................................GTTGATTTGGCCCTGTCCATCTGTCTG.................................27120.081100000
.............................................................................................................................................................................................................................................................................................................................................................................................TGAGTTGATTTGGCCCTGTCCA.........................................22140.071000001
.............................................................................................................................................................................................................................................................................................................................................................................................TGAGTTGATTTGGCCCTGTCCAA........................................23190.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................TGGCCCTGTCCATCTGTCTGT................................21200.051000010
......................................................................................................................................................................................................................................................................TGGGAAATC------AGGGTATAATGGTTT........................................................................................................................................................24200.051001000
...................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGTC----TGTCCGTCTGT................21200.051000001
........................................................................................................................................................................................................................................................................................................................................................................................................................CTGTC----TGTCCGTCTGTCCGT--------A...21200.051000010
..............................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATTTGGCCCTGT............................................18200.051100000
....................................................................................................................................................................................................................................................................................................................................................CCCCACAAAGTATA--TATATTC.................................................................................21200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCCTGTCCATCTGTCTG.................................21200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................TGGCCCTGTCCATCTGTCTGTC----...........................22200.051000010
........................................................................................................................................................................................................................................................................................................................................................................................CGAGCTGAGTTGATTTGGCCC...............................................21200.051001000
droVir3
ATG-CTCTAT--ATATATTGA------------------------------------TACTCGTTTTT------------------------------------------------CGATTATT-----TTA-----------TT-A--------------------AT--T-----C--------CTC-----------TTAGTCGGCG--TGACCA----------G------GTTTTTATACCCTGAACCCATTAGAAA-TGGGTATA------AGAGTATATTGTATTTGTGCAAAATCCAAATGTATGTAACAGGCAGAAGGAAG-CATCGCCGACCCCATAAAGTATA--TATATTCTTGATCAGCATCAATAGCCGAGTCGATCTAGCCATGTCCGTCTGTCTGTC----TGTCCGTCTGTACGT--------ATGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAGG.....................................................................................................................26202.25450000000000000000000045000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAGGAA...................................................................................................................28201.95390050000000000000000000000320000020000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAG-CATC.............................................................................................................26201.40280000000000000000000000000280000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGA........................................................................................................................23201.20240000000000000000000000000000000000002400000000000000000000000000
...............................................................................................................................................................................................................................................................TTAGAAA-TGGGTATA------AGAGTATATTGT...........................................................................................................................................................2720.501000000001000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAG......................................................................................................................25200.357000007000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGCCGA............................................................27200.357000000000000000000000000000100500000000100000000000000000000000
...............................................................................................................................................................................................................................................................TTAGAAA-TGGGTATA------AGAGTATATTT............................................................................................................................................................2630.331000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCG.............................................................22200.255000000000000000000000000000140000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................A-TGGGTATA------AGAGTATATTGTATT........................................................................................................................................................24200.255000000001000000000000000000022000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAG-.................................................................................................................22200.255000000050000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCGTCT......................................21200.204000000000000000000000000000002000000000000000000000000000000200
........................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCCG.............................................................23200.204000000000000000000004000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TGGGTATA------AGAGTATATTGTATTTGTC....................................................................................................................................................27200.204000002000000000000000000000001000000000100000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAG-CATCGCCGAC.......................................................................................................29150.203000000000000000000000000000000000000000000000000000000000000003
...................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGA....................................................................................................................21200.153000000000000000000000000000000030000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCGAG...........................................................21200.153000000000000000000003000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................GATCAGCATCAATAGCCGAGT..........................................................21200.153000000000000000000000000000030000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGGAAG-CATCGC...........................................................................................................21170.122000000001100000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TTATACCCTGAACCCATTAGAAA-TGG..................................................................................................................................................................................2690.111001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGATC.....................................................28200.102000000000000000000000000000020000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCG........................................................25200.102001000000000000000000000000000000000001000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGTCCGTCT......................................20200.102000000000000000001001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................AAATGTATGTAACAGGCAGAAGGAAG-C................................................................................................................27200.102002000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................ATGTATGTAACAGGCAGAAGGAAG-CA...............................................................................................................26200.102000000000200000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................ATGTATGTAACAGGCAGAAGG.....................................................................................................................21200.102000000000000000000000000000002000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TGTGCAAAATCCAAATGTATGTAACAGGC...........................................................................................................................29200.102002000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TGGGTATA------AGAGTATATTGTATTTG......................................................................................................................................................25200.102000000000000000000000000000010100000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCT..................................21200.102000000000000000000000000000000020000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AAGTATA--TATATTCTTGATCAGCA.......................................................................24200.102000000000000000000000000200000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAG-CATCGCCGACCCCATAA................................................................................................29110.091001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAG-CATCGC...........................................................................................................27110.091000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................GCAGAAGGAAG-CATCGCCGAC.......................................................................................................21160.061000000001000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGGAAG-CATCGCC..........................................................................................................22160.061100000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................AAG-CATCGCCGACCCCATAAAG..............................................................................................22170.061100000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAG-CATCGC...........................................................................................................18180.061000000000000100000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................GTATA------AGAGTATATTGTA..........................................................................................................................................................18200.051000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGCCGAG...........................................................28200.051000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................ATA------AGAGTATATTGTATT........................................................................................................................................................18200.051000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTGTC...................................25200.051100000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCTGTC----...........................22200.051000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................GTATA------AGAGTATATTGTATTTGTG....................................................................................................................................................24200.051000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................AGCATCAATAGCCGAGTCGAT......................................................21200.051000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................ATGTATGTAACAGGCAGAAGGAAG-C................................................................................................................25200.051000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGCCG.............................................................26200.051000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................A-TGGGTATA------AGAGTATATTGTAT.........................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCCGAGT..........................................................26200.051000001000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCT....................................................19200.051000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCTGTCTGTC----TGT........................23200.051010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGAAGGA....................................................................................................................25200.051000000100000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TGTGCAAAATCCAAATGTATGTAACAG.............................................................................................................................27200.051000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTG.....................................23200.051000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAG.............................................................................................................................18200.051000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAG-CA...............................................................................................................24200.051000000001000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAA...................................................................21200.051000000000000000000000000000000001000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAATAGC...............................................................25200.051100000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATGT............................................23200.051000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGCCGAGTCG........................................................26200.051000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAA...................................................................................................................22200.051000000000000000000000000000000100000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGA............................................................23200.051000000000000000000000000000000000000000100000000000000000000000
.......................................................................................................................................................................................................................................................................TGGGTATA------AGAGTATATTGTA..........................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................A-TGGGTATA------AGAGTATATT.............................................................................................................................................................19200.051000000001000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCA..........................................................................................................................21200.051000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGAGTC.........................................................26200.051000001000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCCGAG...........................................................25200.051000000000000000000000000000000100000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTAG..................................................21200.051000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAATAGCCGAGTCGATCTAG..................................................26200.051000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................AATCCAAATGTATGTAACAGGC...........................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GTGCAAAATCCAAATGTATGTAACAGGC...........................................................................................................................28200.051000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CTAGCCATGTCCGTCTGTCTG.................................21200.051000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TGGGTATA------AGAGTATATTGTATTTGT.....................................................................................................................................................26200.051000000000000000000000000000000100000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAA...................................................................................................................18200.051000000001000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................GATCAGCATCAATAGCCGAG...........................................................20200.051000000000000000000000001000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAG...........................................................22200.051000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................AGCATCAATAGCCGAGTCGATCTAGC.................................................26200.051000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................................................................................................................................................TGGGTATA------AGAGTATATTGTATT........................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGA........................................................................................................................21200.051000000000000000000000000010000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCTGTCTGTC----TGTCCGT....................20200.051000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAG-CA...............................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................TA--TATATTCTTGATCAGCATCAATAGCC..............................................................28200.051000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAG......................................................................................................................18200.051000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGTCCGTCTGTCTGTC----T..........................28200.051000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCA...............................................23200.051000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCGATCTA...................................................26200.051000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................AAAATCCAAATGTATGTAACAG.............................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................TA------AGAGTATATTGTATTTGTG....................................................................................................................................................21200.051000000000000000000000001000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATCTAGCCATGTC...........................................25200.051000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCTGTC----...........................24200.051000000000000000000000000000010000000000000000000000000000000000
droGri2
ATT-ATTA-T---T-----------------------------------GTACATTT----------------ACA-------T-----------------------------------------------------------------------------------------------------------------------------------ATA----------T------ATGTTTATACCCTGAACCCATTAAAAATGGGTAAAA------AGGGTAAAATGGTTTTGTGCA-------AATGAATG-AACAGGCAGAAGGATG-CATTTCCGACCCCAGAAAGTATA--TATATTCTTGATCAGGGTCAACAGCCGAGTCGATGTAGCCATGTCCGTCTGTCAGTC----CGTCGGTA-------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CTA-CAAATT--TAACA--G----------------------------------------------------CT---------------------------------TTTATCTAAAAGTAATA-----TTC-----------GT-ATTTTA----------AA--AAA--T-----A--------TTCTTAAGGA--A-----TCGACG--T--ACC----------C------ATGTTTATACCATACACCCAT-------AGGGTGAA------ATGGTATATTAAAGTCGCCAA-------AATGTATGTAACAGGCAGAAGGAAG-CATCTCCGACCCCACAAAGTATA--TATATTCTTGATCAGGATCAACAACCGAGTCGATCTAGCTATGTCCGTCCGTCCGTC----CGTCCGTCTGTCCGT--------A---SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................A--TATATTCTTGATCAGGATCA....................................................................21200.20440000
............................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAACAACCGAGTCGATC.....................................................27200.15303000
..........................................................................................................................................................................................................................................................................................................................................................................................AACCGAGTCGATCTAGCTATGTCCG.........................................25200.10200020
..........................................................................................................................................................................................................................................................................................ATATTAAAGTCGCCAA-------AATGT......................................................................................................................................21200.10202000
............................................................................................................................................................................................................................................................CCAT-------AGGGTGAA------ATGGTATATTAAAGT........................................................................................................................................................27200.10200200
...................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTC----CGTCCGTCTGTCCGT--------A---26200.10200020
.....................................................................................................................................................................................................................................................................................................................................................................................TCAACAACCGAGTCGATCTAGCTATGT............................................27150.07100010
......................................................................................................................................................................................................................................................................................................................................................................................CAACAACCGAGTCGATCTAGCTATG.............................................25150.07101000
.....................................................................................................................................................................................................................................................................................................................................................................................TCAACAACCGAGTCGATCTAGCTAT..............................................25160.06101000
..................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCCGTC----CGTCCGTCTGTCCG.............25200.05101000
....................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATCAA...................................................................21200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTC----CGTCCGTCTGTC...............22200.05100010
..........................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAG-CA...............................................................................................................18200.05100100
.......................................................................................................................................................................................................................................................................................................................................................................................................TAGCTATGTCCGTCCGTCCGTC----CG.........................24200.05101000
..............................................................................................................................................................................................................................................................................................TAAAGTCGCCAA-------AATGTATGTA.................................................................................................................................22200.05100010
.......................................................................................................................................................................................................................................................TACACCCAT-------AGGGTGAA------ATGGT..................................................................................................................................................................22200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................................TAGCTATGTCCGTCCGTCC..................................19200.05101000
......................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGATCAACAACCGAGT..........................................................28200.05101000
dp5
GTG-CATAAT--TTTTAGAGT----TTT---------TAAGTCATAGCAGAGCATTT------ATATATATAGATT-----T-----------------------------------------------------------------------------------------AGTA-----------------------------------TATAGATT----------T------ATATTTATACCCGATACTCAA-------AAGGAGTA----TTGGGGTATATTCGATTTGTGGTGAAAATCGATGTGTGTAACGTCCAGAAGGACGTCATTTCCGACCCCATAAAGTATA--TATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGTCCGTC----CGTCCGTCCGTTCGT--------CCGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATCGATGTGTG...................................................................................................................................2336.001801100002500
..................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATCGATGTGTGT..................................................................................................................................2434.671401100003000
..................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATCGATGTGTGTA.................................................................................................................................2531.6750500000000
..................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATCGATGTGTGTAACG..............................................................................................................................2831.6750500000000
..................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATCGATGTGT....................................................................................................................................2231.3340400000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGTCTGTCTGTCCG.................................21201.052102100000000
..............TTAGAGT----TTT---------TAAGTCATAGCAGAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGTCCGTC----CGTCCGT....................21200.851701700000000
.........................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATTGAGCCCT..............................................21200.751501500000000
..........................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGCCGAGTC.........................................................25200.651301300000000
...................................................................................................................................................................................................................................................................................................TTGTGGTGAAAATCGATGTGTG...................................................................................................................................2230.3310100000000
..................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATCGATGTGTGTAA................................................................................................................................2630.3310100000000
..........................................................................................................................................................................................................................................................ACTCAA-------AAGGAGTA----TTGGGG...................................................................................................................................................................2030.3310100000000
...................................................................................................................................................................................................................................................................................................TTGTGGTGAAAATCGATGTGT....................................................................................................................................2130.3310100000000
..................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCCAGAAGGA....................................................................................................................22200.2550500000000
...............................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCGATTGAG..................................................27200.2040000000040
..................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATCGATGTGTGTAAA...............................................................................................................................2750.2010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGTCTGTCTGTCCGTC----CGT........................26200.1020200000000
...................................................................................................................................................................................................................................................................................................................................................................................................GATTGAGCCCTGTCTGTCT......................................19200.1020200000000
..........................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATTGAGCCCT..............................................20200.1020200000000
.................................................................................................................................................................................................................................................................................................................................................................................AGCATCAATAGCCGAGTCGATTGA...................................................24200.1020200000000
.............................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATTGAGCCCTGTCT..........................................21200.1020000002000
..........................................................................................................................................................................................................................................................................................................................................TCATTTCCGACCCCATAAAGTA............................................................................................22100.1010100000000
........................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAG................................................................20200.1020000000020
.............................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCTGTCCGTC----CGTC.......................20200.1020000002000
.............................................................................................................................................................................................................................................................................TA----TTGGGGTATATTCGATTTGTGG...................................................................................................................................................24140.0710100000000
.............................................................................................................................................................................................................................................................................TA----TTGGGGTATATTCGATTTG......................................................................................................................................................21160.0610100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GAGCCCTGTCTGTCTGTCC..................................19200.0510000000100
..........................................................................................................................................................................................................................................................................................................................................................................................................CCCTGTCTGTCTGTCCGTC----C..........................20200.0510000000010
.....................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATTGAGC.................................................22200.0510000100000
.......................................................................................................................................................................................................................................................................................................................................................CATAAAGTATA--TATATTCTT...............................................................................20200.0510000000010
...........................................................................................................................................................................................................................................................................................................................................................AAGTATA--TATATTCTTGATCAGCATCA....................................................................27200.0510000000100
............................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGTCTGTCCGTC----CGTCCG.....................23200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................AGCCCTGTCTGTCTGTCCGTC----...........................21200.0510000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTC----CGTCCGTCCGT................19200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATTGAG..................................................19200.0511000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATTGAGCCCTGTCTGTC.......................................26200.0510100000000
........................................................................................................................................................................................................................................................................................GTATATTCGATTTGTGGT..................................................................................................................................................18200.0510000100000
............................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGTCTGTCCGTC----CGT........................20200.0510000001000
..............................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTGAGCCCTGTC...........................................19200.0510010000000
....................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATTGAGC.................................................23200.0510100000000
..................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCCAGAAGG.....................................................................................................................21200.0510000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................CCTGTCTGTCTGTCCGTC----CGT........................21200.0510000001000
....................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAATAGCC..............................................................26200.0510010000000
.........................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATTGAGCCCTGTC...........................................24200.0510000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................CCCTGTCTGTCTGTCCGTC----CG.........................21200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCCCTGTCTGTCTGTCCG.................................22200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGTCTGTCTGTCCGTC----CG.........................25200.0510000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGTCCGTC----CGTCCGTCC..................23200.0510000001000
droPer2
GTG-CTATTT--TTGTTATGT------------------------------------TTGT-GT--------------------------------TAGGG--------------TATTTCATT-----TTC-----------TT-ACTTGTTAGATTTGTACA-------TTTTTAT---------------------------------CTGTGTA----------T------ATTTTTATACCCGATACTCAA-------AATGAGTA----TTGGGGTATATTAGATTTGTGGTGAAAATGGATGTGTGTAACGTCCAGAAGGAAT-CGTTTCCGACCCCATAAAGTATA--TATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGTCCGTC----CGTCCGTCTGTCCGTCTGTCCGTCCCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................TACTCAA-------AATGAGTA----TTGGGGT..................................................................................................................................................................22201.50300300000
.........................................................................................................................................................................................................................................................TACTCAA-------AATGAGTA----TTGGGGTA.................................................................................................................................................................23201.00200200000
...............................................................................................................................................................................................................................................................................................................................................................................................AGTCGATTGAGCCCTGTCTG.........................................20200.459090000
............................................................................................................................................................................................................................................................................................................AAATGGATGTGTGTAACGTC............................................................................................................................20200.357000007
........................................................................................................................................................................................................................................................................................................GTGAAAATGGATGTGTGT..................................................................................................................................18200.153000003
....................................................................................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTG.....................................................................................................................................19200.153000003
...................................................................................................................................................................................................................................................................................................................................................................................CATCAATAGCCGAGTCGATTGA...................................................22200.102000002
.....................................................................................................................................................................................................................................................................................................GTGGTGAAAATGGATGTGTGTA.................................................................................................................................22200.102000002
...........................................................................................................................................................................................................................................................................................................AAAATGGATGTGTGTAACG..............................................................................................................................19200.102000002
...............................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGTCCGTC----CGTCCGTC...................22200.102200000
.........................................................................................................................................................................................................................................................................................TATATTAGATTTGTGGTGAAAATG...........................................................................................................................................24200.102020000
......................................................................................................................................................................................................................................................................................................TGGTGAAAATGGATGTGTGTAAC...............................................................................................................................23200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCTGTCCGTC----CGTC.......................19200.051000100
........................................................................................................................................................................................................................................................................................GTATATTAGATTTGTGGTGAA...............................................................................................................................................21200.051000001
.............................................................................................................................................................................................................................................................................................TTAGATTTGTGGTGAAAATG...........................................................................................................................................20200.051010000
.............................................................................................................................................................................................................................................................................................................................GTCCAGAAGGAAT-CGTTTCCGACC......................................................................................................24200.051010000
droAna3
CTA-CTCCGA--AGG----G-----C-------------------------------TG---------------------------------T---CA-----ATCA---AAAGA-------TATAGATTCC--AACAGGTGGGGATA-----------------------T----AA--------------------------------TT----------------TAT--TAGTTTTTATACCCTT-----GC-------A------G------AGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGA-CATCTCCGACCCTATAAAGTATA--TATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTC----TGTCCGTCTGTCTGT--------CTGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATCACCTCC...............................................................25207.9515901590000
.TA-CTCCGA--AGG----G-----C-------------------------------TG---------------------------------T---CA-----ATCA---AAAGA-------..................................................................................................................................................................................................................................................................................................................................2711.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................AGCATGTCCGTCTGTCCGTC----TG.........................22200.50100000010
.......................................................................................................................................................................................................................................................................................................................................................................................................TGAGCATGTCCGTCTGTCCGTC----TG.........................24200.306060000
.........................................................................................................................................................................................................................................................................................................................CAACGCAGTGAAGGAGA-CATCTCCGA........................................................................................................26200.306006000
..............................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATATGAGCATGTCCG.........................................21200.102000002
.......................................................................................................................................................................................................................................................TT-----GC-------A------G------AGGGTATTATAATTT........................................................................................................................................................21200.102000002
...........................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCGTCTGTCCGTC----TGT........................21200.102000002
..............................................................................................................................................................................................................................................................................................................................CAGTGAAGGAGA-CATCTCCG.........................................................................................................20200.051001000
.................................................................................................................................................................................................................................................................................................................................................................................AGGATCACCTCCTGAGTTGAT......................................................21200.051010000
..................................................................................................................................................................................................................................................................................................................................................................................................TGATATGAGCATGTCCGTCTGT....................................22200.051001000
.....................................................................................................................................................................................................................................................................................................................................................................................................TATGAGCATGTCCGTCTGTC...................................20200.051001000
......................................................................................................................................................................................................................................................................................................................................................................................CACCTCCTGAGTTGATATGAGC................................................22200.051000001
........................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCACCTCCTGA............................................................24200.051001000
.....................................................................................................................................................................................................................................................................................................................................................................................TCACCTCCTGAGTTGATATGAGCATG.............................................26200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGGATCACCTCCTGAGTT.........................................................28200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................TGAGTTGATATGAGCATGTC...........................................20200.051000001
........................................................................................................................................................................................................................................................................................................................................................................................................GAGCATGTCCGTCTGTCCG.................................19200.051000010
..................................................................................................................................................................................................................................................................................................................................................................................................TGATATGAGCATGTCCGTCTGTCCGTC----T..........................28200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................ACCTCCTGAGTTGATATGAGCATGTCCG.........................................28200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................TTGATATGAGCATGTCCGTCT......................................21200.051000010
droBip1
CTG-TTTC-T---TAAACTGGTGGTC-T----------------------------------AATTAAATTGTTAT-----TATTTGCCATTA-----------------T-----------------------------------------A-----------TGAATTATTAA-----------------------------------TATTGGGA----------C------GTTTTTATACCCTT-----GC-------A------G------AGGGTATTATAATTTTGTCCA-------AAAGTGTGCAACGCAGTGAAGGAGA-CATCTCCGACCCTATAAAGTATA--TATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTC----TGTCCGTCTGTCCGT--------CTGTSizeHit CountTotal NormTotal
No Reads
droKik1
CATGCATAAC--TTATA---T--------------------------------AT--CGGCCAGAAAA------------------------------------------------CTAACATT-----TTG-----------GT-ATTTTA----------TG----G--T-----A--------TTTTTAA----------------------GTG----------C------ATTTTTATACCCTT-----G---------------C------AGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGGTGTGAAGGAGA-CGTTTCCGACCCTATAAAGTATA--TATATTCTTGATCAGCATCAACAGCCGAGTTGATCTAGCCATGTCCGTCTGTTCGTC----TGTCCGTCTGTCCGT------------SizeHit CountTotal NormTotal
No Reads
droFic1
ATT-ATTTAT---T-----------------------------------ATATACTT----C------------------------------------------------ATATCAAAATTATT-----TTT-----------AT-ATTTGT---------ACA----G--T----ATCTG----------TAGAA--GTTTAG---------------TTCC--TCGG------CTTTTTATACCCTT-----GC-------AGAGCA-A------AGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGA-CACCTCAGACCCCATAAAGTATA--TATATTCTTGATCAGCATCACCATCTGAATCGAAATATGTATGTACGTCTGTCCGTC----TGTCCGTCTGTCTGT--------CTGTSizeHit CountTotal NormTotal
No Reads
droEle1
CCG-CTTTCC--TTTTTT---------TTATGGGCATACACAG------ATATACTT----------------CCA-------T--------------------------------------------------------------A------------------------CATA-----------C----------A------------TT----------------TATATTACTTGTTATACCCTT-----GC-------A------G------AGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGA-CGTTTCCGACCCTATAAAGTATA--TATATTCTTGATCAGCATCACTAGTAGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTCTGTCCGT--------CCGTSizeHit CountTotal NormTotal
No Reads
droRho1
CTG-CATCAT--TGGT---------C-TTGTTGAAATACAC------------AT-----------------CT---------------------------------TCAATCTAAGA----TT-----TAG-----------CTTAA---------------------TATATATAA--------------------------------TT-TTTAA----------T------ATTTTTATACCCGTTACTCGT-------AGAGTAAA------AGGGTATATTGTATTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAG-CGTTTCCGACCCTATAAAGTATA--TATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTC----TGTCCGTCTGTCCGT--------CTGTSizeHit CountTotal NormTotal
No Reads
droBia1
TAC-TTGTAG--TTGT-----------------------------------AGATTT----------------GTA-------T------------T-------------TAATA-------TTTAGATTTC--TTAGTTTAGGGCTA-----------------------T----AGCT-------------------------------CTGG----------TTT-----TACTTTTTGTACCCGTTACTCGT-------AGAGTAAA------AGGGTGTACTAGATTCGTCGC-------AAAGTATGTAAGAGGTAGAAGTTAG-CGTTTCCGACCCCATAAAGTATATATATATTCTTGAACCGGATCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCTGTC----TGTCTGTCTGTTCGT--------A---SizeHit CountTotal NormTotal
No Reads
droTak1
CAA-CATTAC--ATAAACTGG------------------------------------AAAATATTCAG---GGATT-----TTTACA--------------------------------------------------------TT-A---------------CA----A--A----ATTTG----------AAGTACATTTTAG---------------TTCGGGATTT----AAGTTATTATACCCGTTACTCGT-------AGAGTAAA------AGGGTATATTAGATTCGTGCA-------AAAGTATGTAACAGGTAGAAGGAAG-CGTTTCCGACCCCATAAAGTATA--TATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTC----TGTCCGTCTGTCCGT--------CTGTSizeHit CountTotal NormTotal
No Reads
droEug1
TTG-CGTTAG--ATGTTCCGT------------------------------------GTTTAATTATAACTTAATGTCCCT----------TC---CA-----ATTA---AA----------------------------------------------------------ATATA-----------------------------------TCTATTTC----------T------GTATTTATACCCGTTACTCGT-------AAAGTAAA------AGGGTATATTAGATTCGTTGA-------AAAGTATGTAACAGATAGAAGGGAG-CTTTTGCGACCCTATAAAGTATA--TATATTCTTGATCAGGATCAATAGCGAAGTTGATTGAGCCATGTCCGTCTGTCCGTC----CGTCCGTCCGTCCGT--------CCGTSizeHit CountTotal NormTotal
No Reads
dm3
TA--CACTAT--TTGCTGGGT------------------------------------GAGTTAATATATTTTGATT-----TCTACATCTTTC-----------------A-----------------------------------------A-----------ATAAATATGGA-----------------------------------TACAGTTT----------G------ATTATTATACCCGTTAATCAT-------AGAGTAAAATGGGTATGGTATTCTATATTCGTTG--------AATGTATGTAACAGGTAGAAGGAAG-CTATTCCGATCATATAAGGTATA--AATATTCTTGATCAGGATAAATAGCTGAATCGATCTGGTCATGTCCGTCCGTTCGTC----TGTCTGTC-------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......TAT--TTGCTGGGT------------------------------------GAGTTAATATATTTT....................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TTCGTTG--------AATGTATGTAACAGG............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AT--TTGCTGGGT------------------------------------GAGTTAATAT.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATAAATAGCTGAATCG........................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAG-C................................................................................................................22180.721300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000001000
........................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATAAATAGC...............................................................21110.5560000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TATA--AATATTCTTGATCAGGA.......................................................................2180.5040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000010000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AATGTATGTAACAGGTAGAAG......................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ATGTAACAGGTAGAAGGAAG-C................................................................................................................21200.4590000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000010000000000000001000000000000001000000000000000100000
..................................................................................................................................................................................................................................................................................................TTCGTTG--------AATGTATGTAACAGGC...........................................................................................................................2350.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAG-.................................................................................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100010000000000000000000000000000003000000000000000000000
....................................................................................................................................................................................................................................................................................................................GTATGTAACAGGTAGAAGGAAG-C................................................................................................................23170.2950000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000300000000000000000000000000
....................................................................................................................................................................................................................................................................................................................GTATGTAACAGGTAGAAGG.....................................................................................................................19200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000100000000000000100000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................ATA--AATATTCTTGATCAGGAT......................................................................2180.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TATA--AATATTCTTGATCAGG........................................................................2080.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................TA--AATATTCTTGATCAGGA.......................................................................19110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAA...................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000001000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................GTATA--AATATTCTTGATCAGG........................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TCGTTG--------AATGTATGTAACAGGCTT.........................................................................................................................2480.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................ATA--AATATTCTTGATCAGGA.......................................................................2080.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATAAAT..................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGGATAAAT..................................................................19110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................A--AATATTCTTGATCAGGA.......................................................................18140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ATGTAACAGGTAGAAGGAA...................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................GTATGTAACAGGTAGAAG......................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TGTAACAGGTAGAAGGAAG-.................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................GTATGTAACAGGTAGAAGGA....................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................GTATGTAACAGGTAGAAGGAA...................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGA....................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATAAATAGCA..............................................................19200.0510000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTG-ATTA-T---T-----------------------------------ATCGACTT----------------GTCTTATT----------CC---CA-----GATT---ATTTAAAAGTG----------------------------------------------------------------------------------------------ATT----------C------TTAGTTATACCCGTTACTCGT-------AGGCTAAA------AGGGTATACTTTATACGTTGA-------AATATATGTAACAGGTAAAAGGAAG-CATTTCCGACCATACAATATGTA--TATATTCTTGATCAGGATCAATAGTCGAGTCGATCTAGCCATGTACGTCTGTCCGTA----TGTCCGTA-------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................TTAGTTATACCCGTTACTCGT-------AGGC.................................................................................................................................................................................2512.00200000001100000000
......TA-T---T-----------------------------------ATCGACTT----------------GTCTTATT----------CC---CA-----GA...................................................................................................................................................................................................................................................................................................................................................2612.00200000011000000000
.............................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTACGTC.......................................2412.00200000000001010000
...............................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGTCGAGTCGATC.....................................................2461.33800200000006000000
...............................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGTCGAGTCGATCTA...................................................2631.00300000000102000000
.........................................................................................................................................................................................................................................................TACTCGT-------AGGCTAAA------AGGGTATA...............................................................................................................................................................2311.00100000000001000000
.....TTA-T---T-----------------------------------ATCGACTT----------------GTCTTATT----------CC---CA-----GA...................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TACGTCTGTCCGTA----TGTCCGTA-------------------2211.00100100000000000000
...........................................................................................CC---CA-----GATT---ATTTAAAAGTG----------------------------------------------------------------------------------------------A....................................................................................................................................................................................................................................2011.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................TACAATATGTA--TATATTCTTGATCAGGA.......................................................................2811.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................TGTAACAGGTAAAAGGAAG-CATTTC...........................................................................................................2511.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTACGTCT......................................2511.00100000000001000000
........................................................................................................................................................................................................................TT----------C------TTAGTTATACCCGTTAC................................................................................................................................................................................................2011.00100000000000010000
.........................................................................................................................................................................................................................................................TACTCGT-------AGGCTAAA------AGGGTATACTTTA..........................................................................................................................................................2811.00100000000000010000
................................................................................................................................................................................................................................................................................................TATACGTTGA-------AATATATGTAACAGGT...........................................................................................................................2611.00100000010000000000
..........................................................................................................T---ATTTAAAAGTG----------------------------------------------------------------------------------------------ATT----------C------TTAGTTATA........................................................................................................................................................................................................2511.00100000000010000000
................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGTCGAGTCGATCTAGC.................................................2730.67200000011000000000
........................................................................................................................................................................................................................................................................................................................GTAACAGGTAAAAGGAAG-CATTTCCGAT.......................................................................................................2820.50100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGTCGAGT..........................................................2630.33100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................GGATCAATAGTCGAGTCGATCTAGC.................................................2530.33100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGTCGAGTC.........................................................2630.33100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGTCGAGTCGATCT....................................................2460.33200000010100000000
................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGTCGAGTCGATCTA...................................................2530.33100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................GTA--TATATTCTTGATCAGGATCAATA.................................................................26200.30600000000006000000
.....................................................................................................................................................................................................................................................................................................................................................................................TCAATAGTCGAGTCGATCTAGCCA...............................................2440.25100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGTCGAGT..........................................................2340.25100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGTCGAGTCGA.......................................................2540.25100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................CAATAGTCGAGTCGATCTAGCCA...............................................2340.25100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................TCAATAGTCGAGTCGATCTAGCCATG.............................................2640.25100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGTCGAGTCGA.......................................................2640.25100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTACGTCTGTCCGT................................2150.20100000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTCGATCTAGCCAT..............................................1950.20100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................ATGTA--TATATTCTTGATCAGGATCA....................................................................2550.20100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................ATGTA--TATATTCTTGATCAGGATCAA...................................................................2650.20100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATCAATAGTC..............................................................25100.20200000000002000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTACGTCTGTCC..................................1950.20100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTCGATCTAGCC................................................1760.17100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................GATCAGGATCAATAGT...............................................................16200.15300000000003000000
..............................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTAGCCATG.............................................17200.15300000000003000000
................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGTCGAGTCGAT......................................................2270.14100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................ATGTA--TATATTCTTGATCAGGAT......................................................................2370.14100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CCATGTACGTCTGTC...................................1570.14100000000001000000
................................................................................................................................................................................................................................................................................................................................................................TA--TATATTCTTGATCAGGATCAATAGTC..............................................................2880.13100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGTCGAGTC.........................................................1890.11100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGT............................................19200.10200000000002000000
.............................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCC................................................15200.10200000000002000000
.............................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATG.............................................18200.10200200000000000000
...............................................................................................................................................................................................................................................................................................................................................................GTA--TATATTCTTGATCAGGATCAAT..................................................................25200.10200000002000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TCAATAGTCGAGTCGAT......................................................17140.07100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGT............................................16200.05100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................A--TATATTCTTGATCAGGAT......................................................................19200.05101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTAGCCATGT............................................18200.05100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGT............................................15200.05100000000001000000
droSec2
TAG-TTGTAT--TAATAGTAT--------------------------------------------AAA---GGATT-----TTT--------------------------------CGACACTT-----TTGTGCAAATCCAGCGTAA-----------------------T----ACTTATGGTAA----------A------------TT----------------TAT--GACTTTTCGTACCCGTTACCCTT-------AGAGTAAA------AGTGTATACTAGATACGTTGA-------AAAGTATGTAACAGGCAGAAGGAAG-CGTTTCTGACCATATAAAGTATA--TATATTCTTGATCAGGATCAATAGCTGGTCTGATCTGGACATGTCCGTCTGTCCGTA----TGA------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCTGGTCTGAGA.....................................................191106.0010696604
....................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCTGGTCTGAG......................................................18161.006161000
.....................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCTGGTCTGAGA.....................................................18229.005857001
...................................................................................................................................................................................................................................................................................................................................................................................GATCAATAGCTGGTCTGAGA.....................................................20124.002424000
...................................................................................................................................................................................................................................................................................................................................................................................GATCAATAGCTGGTCTGAG......................................................19122.002222000
...................................................................................................................................................................................................................................................................................................................................................................................GATCAATAGCTGGTCTGAGAG....................................................21116.001612301
....................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCTGGTCTGAGAG....................................................20615.8395801401
...................................................................................................................................................................................................................................................................................................................................................................................GATCAATAGCTGGTCTGA.......................................................1816.0066000
.....................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCTGGTCTGAGAG....................................................19165.138281001
.................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCTGGTCTGAGA.....................................................2211.0011000
...................................................................................................................................................................................................................................................................................................................................................................................GATCAATAGCTGGTCTGAGG.....................................................2011.0011000
....................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCTGGTCTGAA......................................................1811.0011000
..............................................................................................................................................................................................................................................................................................................................................................TATA--TATATTCTTGATCAGGATC.....................................................................23200.1533000
....................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCTGGTCTGGG......................................................1870.1411000
.......................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAG-CGTTT............................................................................................................24200.0510001
.........................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAG-CGT..............................................................................................................20200.0510100
................................................................................................................................................................................................................................................................................................................................................................TA--TATATTCTTGATCAGGATC.....................................................................21200.0511000
............................................................................................................................................................................................................................................................................................................................................................AGTATA--TATATTCTTGATCAGGATC.....................................................................25200.0511000
.................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGCAGAAGGAAG-C................................................................................................................26200.0510001
..............................................................................................................................................................................................................................................................................................................................................................TATA--TATATTCTTGATCAGGATCAA...................................................................25200.0511000
.....................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCTGGTCTGAGG.....................................................18200.0511000
.............................................................................................................................................................................................................................................................................................................................................................GTATA--TATATTCTTGATCAGGATCAATA.................................................................28200.0511000
droYak3
ATT-AAATATAGTAATTATTT-------------------------------------------TATA--------------------------GAATAAG--------------AAATTTATG-----TTT-----------GT-ATTTGAAATAATTATATA-------TAAT-----------------------------------TGTATAACGTTCA--TTCT------ATTTTTATACCCGTTACTCGT-------AGAGTAAA------AGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGCAGAAGGAAG-CGTTTCCGACCATATAAAGTATA--TATATTCTTGATCAGGATCAATAGCCGAATCGATTTGGCCATGTCCGTCTGTCCGTC----CGTCTGTCTGTCCGT--------CTGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................TTTATACCCGTTACTCGT-------AGAGTAAA------.......................................................................................................................................................................26200.45900000000009
...............................................................................................................................................................................................................................................................T-------AGAGTAAA------AGGGTATACTAGATTCGT.....................................................................................................................................................27200.40808000000000
.......................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAG-CGTTTCCGACC......................................................................................................30200.40800000000008
..............................................................................................................................................................................................................................................................................A------AGGGTATACTAGATTCGTTGA-------AAA........................................................................................................................................25200.20400000000004
...................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCCGTC----CGTCTGTCTGTCCG.............24200.15303000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCCATGTCCGTCTGTCCGTC----...........................24200.15303000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCCATGTCCGTCTGT....................................21200.10202000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTC----CGTCTGTCTGTCCGT--------CTG.26200.10202000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCGTC----CGTCTGTCTG.................24200.10200200000000
...............................................................................................................................................................................................................................................................................................................................................................ATA--TATATTCTTGATCAGGAT......................................................................21200.10220000000000
........................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAATCGATTTGGCCATGTC...........................................25110.09101000000000
....................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAG-CG...............................................................................................................24200.05100100000000
.........................................................................................................................................................................................................................................................................................................................................G-CGTTTCCGACCATATAAAGT.............................................................................................21200.05100000010000
...................................................................................................................................................................................................................................CT------ATTTTTATACCCGTTACTCGT-------AGAGT................................................................................................................................................................................28200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................A--TATATTCTTGATCAGGATCAATAGCCGA............................................................29200.05100000010000
..................................................................................................................................................................................................................................................................................................................AAGTATGTAACAGGCAGAAGGA....................................................................................................................22200.05100000010000
.....................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATCAATAGCCGA............................................................27200.05101000000000
...........................................................................................................................................................................................................................................................................................TACTAGATTCGTTGA-------AAAG.......................................................................................................................................19200.05100100000000
.............................................................................................................................................................................................................................................................................AA------AGGGTATACTAGATTCGTTG...................................................................................................................................................22200.05100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................CGATTTGGCCATGTCCGTCTGTCCGTC----C..........................28200.05101000000000
........................................................................................................................................................................................................................................................TTACTCGT-------AGAGTAAA------AGGGTATACTA............................................................................................................................................................27200.05100010000000
......................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAG-CGTTTCC..........................................................................................................27200.05100000010000
droEre2
TTG-CAGTCA--GG-----GT----TTT---------AAAAAA------ATACATTT----------------TCC-------TATATCTTATATAATAATAC-------AAAT-------------------------------------------------------------------------------------------------CA--------------------GAGTTGTTATACCCGTTACTCGT-------AGAGTAAA------AGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGCAGAAGGAAA-CGTTTCCGACCATATAAAGTATA--TATATTCTTGATCAGGATCAATAGCCGAGT------GGCCATGTCCGTCCGTC----------------TGTCCGT--------A---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAA-CGTTT............................................................................................................21200.1020000200
............................................................................................................................................................................................................................................................................AAA------AGGGTATACTAGATTCGT.....................................................................................................................................................21200.1020000200
............................................................................................................................................................................................................................................TTGTTATACCCGTTACTCGT-------AGAGT................................................................................................................................................................................25200.0510000100
.......................................................................................................................................................................................................................................................................................GGTATACTAGATTCGTTGA-------AAAG.......................................................................................................................................23200.0510000100
..............................................................................................................................................................................................................................................................................................TAGATTCGTTGA-------AAAGTATGTAACAGG............................................................................................................................27200.0511000000
..............................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAA-CGTTTCC..........................................................................................................19200.0510000100
...............................................................................................................................................................................................................................................................T-------AGAGTAAA------AGGGTATACTAGATTC.......................................................................................................................................................25200.0510000100
.........................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAA-CGTTTCC..........................................................................................................24200.0510000010

Generated: 05/17/2015 at 10:03 PM