ID:

dmo_353

 Coordinate:

scaffold_2691:2240-2309 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.2 -21.8 -21.6

Flybase annnotation

exon [dmoj_GLEANR_15054:3]; CDS [Dmoj\GI14493-cds]; exon [dmoj_GLEANR_15054:2]; CDS [Dmoj\GI14493-cds]; intron [Dmoj\GI14493-in]

Repeatable elements

NameClassFamilyStrand
Gypsy1-I_Dmoj-intLTRGypsy-
mature
  1. scaffold_12:1962-1988 +
  2. scaffold_2341:1480-1506 -
  3. dmo_353  scaffold_2691:2262-2288 -
  4. scaffold_3398:1856-1882 +
  5. scaffold_4300:1468-1494 +
  6. scaffold_4658:2173-2199 +
  7. dmo_370  scaffold_4658:4457-4483 +
  8. scaffold_4658:7189-7215 +
  9. scaffold_4743:16742-16768 -
  10. scaffold_5004:681-707 -
  11. dmo_454  scaffold_6314:47473-47499 +
  12. scaffold_6404:77887-77913 -
  13. scaffold_6462:3012-3038 +
  14. scaffold_6463:40308-40334 +
  15. scaffold_6482:2685572-2685598 +
  16. scaffold_6482:2694404-2694430 +
  17. scaffold_6541:981196-981222 +
  18. scaffold_6541:1944737-1944763 -
star

Sense Strand Reads

##################################################----------------------------------------------------------------------##################################################
ATGAGGATGTAAGAGGAGGTGAACGGGAAGACGTCCCTGATACGCGGGCAGTGGGTGTCGATAGAGAGCGATTGGTCTGGAGATCCGGAATCGCTTGCTCGACCGAAAACTCGTGGACAGGAATGGAAGAGAGGCCCCGAGGCGCCGTGTTGGTCCCCGACGCGAAAGAA
**************************************************.((((((((((....(((((((...(((((....))))))))))))..))))).....))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V049
head
................................................................................................................GTGGACAGGAATGGAAGAGAGG.................................... 22 0 19 1.21 23 18 0 5 0 0
................................................................................................................GTGGACAGGAATGGAAGAGAGGCC.................................. 24 0 18 0.89 16 9 2 5 0 0
................................................................................................................GTGGACAGGAATGGAAGAGAGGCCC................................. 25 0 18 0.83 15 9 1 5 0 0
................................................................................................................GTGGACAGGAATGGAAGAGAGGC................................... 23 0 18 0.72 13 12 0 1 0 0
.......................................................................TTGGTCTGGAGATCCGGAATCGCTTGC........................................................................ 27 0 18 0.61 11 10 0 1 0 0
.......................................................................TTGGTCTGGAGATCCGGAATCGCT........................................................................... 24 0 18 0.28 5 4 1 0 0 0
...................................................TGGGTGTCGATAGAGAGCGATTG................................................................................................ 23 0 16 0.25 4 4 0 0 0 0
.....................................................................................................................CAGGAATGGAAGAGAGGCCC................................. 20 0 18 0.22 4 2 2 0 0 0
.................................................................................................................TGGACAGGAATGGAAGAGAGGC................................... 22 0 18 0.22 4 4 0 0 0 0
.......................................................................TTGGTCTGGAGATCCGGAATCGCTTG......................................................................... 26 0 18 0.17 3 3 0 0 0 0
.....................................................................................................................CAGGAATGGAAGAGAGGCCCC................................ 21 0 18 0.17 3 2 1 0 0 0
...........................AAGACGTCCCTGATACGCGGG.......................................................................................................................... 21 0 20 0.15 3 2 1 0 0 0
.........................................................TCGATAGAGAGCGATTGGTCTGG.......................................................................................... 23 0 14 0.14 2 1 0 1 0 0
...................................................TGGGTGTCGATAGAGAGCGATTGGTC............................................................................................. 26 0 14 0.14 2 1 0 0 1 0
...................................................TGGGTGTCGATAGAGAGCGATTGG............................................................................................... 24 0 15 0.13 2 2 0 0 0 0
.............AGGAGGTGAACGGGAAGACGTC....................................................................................................................................... 22 0 9 0.11 1 1 0 0 0 0
.....................................................................................................................CAGGAATGGAAGAGACGCCCCGAG............................. 24 1 18 0.11 2 2 0 0 0 0
.......................................................................TTGGTCTGGAGATCCGGAATCGCTC.......................................................................... 25 1 18 0.11 2 2 0 0 0 0
.......................................................................TTGGTCTGGAGATCCGGAATCGC............................................................................ 23 0 18 0.11 2 2 0 0 0 0
.....................................................................................................................CAGGAATGGAAGAGAGGCCCCG............................... 22 0 18 0.11 2 2 0 0 0 0
.......................................................................TTGGTCTGGAGATCCGGAATCGCTT.......................................................................... 25 0 18 0.11 2 2 0 0 0 0
..................GTGAACGGGAAGACGTCCCTGATC................................................................................................................................ 24 1 9 0.11 1 0 0 1 0 0
....................................................................................................................ACAGGAATGGAAGAGAGGCCC................................. 21 0 18 0.11 2 0 2 0 0 0
..................GTGAACGGGAAGACGTCCCTGA.................................................................................................................................. 22 0 9 0.11 1 1 0 0 0 0
.............................................................................................CTTGCTCGACCGAAAACTCGT........................................................ 21 0 10 0.10 1 1 0 0 0 0
....................................................................................CCGGAATCGCTTGCTCGACCG................................................................. 21 0 10 0.10 1 1 0 0 0 0
......................................................................................GGAATCGCTTGCTCGACCGAAAACA........................................................... 25 1 10 0.10 1 1 0 0 0 0
...............................................................................................TGCTCGACCGAAAACTCGTGG...................................................... 21 0 10 0.10 1 1 0 0 0 0
........................................................................................................................................CCGAGGCGCCGTGTTGGTCCC............. 21 0 11 0.09 1 0 1 0 0 0
.....................................................................................................................CAGGAATGGAAAAGAGGCCCCGAGGCGC......................... 28 1 11 0.09 1 1 0 0 0 0
...........................................................................................................................TTGAAGAGAGGCCCCGAGGCGCCGTGTC................... 28 2 11 0.09 1 0 1 0 0 0
.....................................................................................................................CAGGAATGGAAGAGAGGCCCCGAGGCGCC........................ 29 0 11 0.09 1 1 0 0 0 0
.....................................................................................................................CAGGAATGGAAAAGAGACCCCGAGGCGC......................... 28 2 11 0.09 1 0 1 0 0 0
..............................................................................................TTGCTAGACCGAACACTCGTGT...................................................... 22 3 11 0.09 1 0 1 0 0 0
.....................................................................................................................CAGGAATGGAAGAGAGGCCCCGAGGCTC......................... 28 1 11 0.09 1 0 0 1 0 0
.........................................................TCGATAGAGAGCGATTGGTCTGGAG........................................................................................ 25 0 14 0.07 1 1 0 0 0 0
.........................................................TCGATAGAGAGCGATTGGTCTGGATT....................................................................................... 26 2 14 0.07 1 1 0 0 0 0
...................................................TGGGTGTCTATAGAGAGCGATTGG............................................................................................... 24 1 15 0.07 1 0 0 1 0 0
..............................................................................................................TCGTGGACAGGAATGGAAGAGAGGC................................... 25 0 15 0.07 1 1 0 0 0 0
..............................................................................................................TCGTGGACAGGAATGGAAGAGAGG.................................... 24 0 16 0.06 1 1 0 0 0 0
...............................................................................................................CGTGGACAGGAATGGAAGAGA...................................... 21 0 17 0.06 1 1 0 0 0 0
.........................................................................................................................AATGGAAGAGAGGCCCCGAGGC........................... 22 0 18 0.06 1 0 1 0 0 0
.....................................................................................................................CAGGAATGGAAGAGAGGCCCCGAGGC........................... 26 0 18 0.06 1 0 1 0 0 0
.....................................................................................................................CAGGAATGGACGAGAGGCCCC................................ 21 1 18 0.06 1 0 1 0 0 0
.......................................................................TTGGTCTGGAGGTCCGGAATCGCTTGC........................................................................ 27 1 18 0.06 1 1 0 0 0 0
........................................................................TGGTCTGGAGATCCGGAATCGCTTGC........................................................................ 26 0 18 0.06 1 1 0 0 0 0
................................................................................................................GGGGACAGGAATGGAAGAGACGCCC................................. 25 2 18 0.06 1 0 1 0 0 0
................................................................................................................GTGGACAGGAATAGAAGAGAGGC................................... 23 1 18 0.06 1 1 0 0 0 0
................................................................................................................GTGGACAGGAATGGAAGAGAGGCCCC................................ 26 0 18 0.06 1 0 0 1 0 0
................................................................................................................GTAGACAGGAGTGGAAGAGAGGC................................... 23 2 18 0.06 1 0 0 0 0 1
................................................................................................................GTGGACAGGAATGGAAGAGACGCC.................................. 24 1 18 0.06 1 0 0 1 0 0
.....................................................................................................................CAGGAATGGAAGAGACGCCCCGA.............................. 23 1 18 0.06 1 1 0 0 0 0
................................................................................................................GTGGACAGAAATGGAAGAGAGGCC.................................. 24 1 18 0.06 1 1 0 0 0 0
................................................................AGAGCGATTGGTCTGGAGATC..................................................................................... 21 0 18 0.06 1 1 0 0 0 0
.......................................................................TTGGTCTGGAGATCCGGAAT............................................................................... 20 0 18 0.06 1 0 1 0 0 0
............................................................................CTGGAGATCCGGAATCGCTTG......................................................................... 21 0 18 0.06 1 1 0 0 0 0
..........................................................................................................................ATGGAAGAGAGGCCCCGAGGC........................... 21 0 18 0.06 1 0 1 0 0 0
......................................................................................................................AGGAATGGAAGAGAGGCCCCGA.............................. 22 0 18 0.06 1 1 0 0 0 0
........................................................................TGGTCTGGAGATCCGGAATCGCT........................................................................... 23 0 18 0.06 1 1 0 0 0 0
.....................................................................................................................CAGGAATGGAAGAGAGGCCCCGAGGCG.......................... 27 0 18 0.06 1 1 0 0 0 0
......................................................................................................................AGGAATGGAAGAGAGGCCCCGAGGCG.......................... 26 0 18 0.06 1 1 0 0 0 0
........................................................................TGGTCTGGAGATCCGGAATCGC............................................................................ 22 0 18 0.06 1 1 0 0 0 0
................................................................................................................TTGGACAGGAATGGAAGAGACGCCT................................. 25 3 18 0.06 1 0 1 0 0 0
.....................................................................................................................CAGGAATGGAAGAGAGGCCCCGAG............................. 24 0 18 0.06 1 1 0 0 0 0
................................................................................................................GGGGACAGGAATGGAAGAGAGGCCC................................. 25 1 18 0.06 1 0 1 0 0 0
................................................................................................................GGGGACAGGAATGGAAGAGAGGCC.................................. 24 1 18 0.06 1 0 1 0 0 0
................................................................................................................GTGGACAGGAATGGAAGAGAG..................................... 21 0 19 0.05 1 1 0 0 0 0
...................................................TGGGTGTCGATAGAGAGCGA................................................................................................... 20 0 19 0.05 1 0 0 1 0 0
................................................................................................................GTGGACAGGAATGGAAAAGAGGCCCC................................ 26 1 19 0.05 1 0 1 0 0 0
.....................................................................................................................CAGGAATGGAAAAGAGGCCCCGAG............................. 24 1 19 0.05 1 0 1 0 0 0
..................................................................................ATCCGGAATCGCTTGCTCGAC................................................................... 21 0 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TACTCCTACATTCTCCTCCACTTGCCCTTCTGCAGGGACTATGCGCCCGTCACCCACAGCTATCTCTCGCTAACCAGACCTCTAGGCCTTAGCGAACGAGCTGGCTTTTGAGCACCTGTCCTTACCTTCTCTCCGGGGCTCCGCGGCACAACCAGGGGCTGCGCTTTCTT
**************************************************.((((((((((....(((((((...(((((....))))))))))))..))))).....))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V056
head
......................................................................................................GGCTTTTGAGCACCTGTCCTTACCT........................................... 25 0 10 3.80 38 30 3 1 4 0
................................................................................................CGAGCTGGCTTTTGAGCACCTGTCCT................................................ 26 0 10 3.50 35 25 7 3 0 0
.....................................................CCACAGCTATCTCTCGCTAACCAGACCT......................................................................................... 28 0 14 2.71 38 12 26 0 0 0
.................................................................................................GAGCTGGCTTTTGAGCACCTGTCCT................................................ 25 0 10 2.70 27 26 1 0 0 0
....................................................................................................CTGGCTTTTGAGCACCTGTCCTTACCT........................................... 27 0 10 2.60 26 21 5 0 0 0
........................................................CAGCTATCTCTCGCTAACCAGACCT......................................................................................... 25 0 14 1.57 22 9 13 0 0 0
.....................................................................................................TGGCTTTTGAGCACCTGTCCTTACCT........................................... 26 0 10 1.30 13 11 1 0 1 0
...................................................................................................GCTGGCTTTTGAGCACCTGTCCTTACCT........................................... 28 0 10 0.90 9 7 2 0 0 0
.......................................................ACAGCTATCTCTCGCTAACCAGACCT......................................................................................... 26 0 14 0.64 9 8 1 0 0 0
......................TGCCCTTCTGCAGGGACTATGCGCCCGT........................................................................................................................ 28 0 8 0.63 5 5 0 0 0 0
.......................GCCCTTCTGCAGGGACTATGCGCCCGT........................................................................................................................ 27 0 8 0.63 5 5 0 0 0 0
..................................................................................................AGCTGGCTTTTGAGCACCTGTCCT................................................ 24 0 10 0.60 6 5 0 1 0 0
...............................................................................................ACGAGCTGGCTTTTGAGCACCTGTCCT................................................ 27 0 10 0.40 4 4 0 0 0 0
....................................................CCCACAGCTATCTCTCGCTAACCAGACCT......................................................................................... 29 0 14 0.36 5 2 3 0 0 0
......................................................CACAGCTATCTCTCGCTAACCAGACCT......................................................................................... 27 0 14 0.36 5 3 2 0 0 0
.....................................ACTATGCGCCCGTCACCCACAGCTAT........................................................................................................... 26 0 6 0.33 2 2 0 0 0 0
.......................................TATGCGCCCGTCACCCACAGCTAT........................................................................................................... 24 0 6 0.33 2 1 0 1 0 0
..............................................................................................AACGAGCTGGCTTTTGAGCACCTGTCCT................................................ 28 0 10 0.30 3 2 0 0 0 1
.........................CCTTCTGCAGGGACTATGCGCCCGT........................................................................................................................ 25 0 8 0.25 2 1 1 0 0 0
.........................................................AGCTATCTCTCGCTAACCAGACCT......................................................................................... 24 0 14 0.21 3 3 0 0 0 0
.................................................................................................................................................GCACAACCAGGGGCTGCGCTTTCTT 25 0 10 0.20 2 2 0 0 0 0
.......................................................................................................GCTTTTGAGCACCTGTCCTTACCT........................................... 24 0 10 0.20 2 0 2 0 0 0
...................................................................................................GCTGGCTTTTGAGCACCTGTCCT................................................ 23 0 10 0.20 2 2 0 0 0 0
...............................................................................................ACGAGCTGGCTTTTGAGCACCTGTCCTT............................................... 28 0 10 0.20 2 2 0 0 0 0
..........................................GCGCCCGTCACCCACAGCTATCTCT....................................................................................................... 25 0 6 0.17 1 0 1 0 0 0
.....................................ACTATGCGCCCGTCACCCACAGCT............................................................................................................. 24 0 6 0.17 1 1 0 0 0 0
........................................ATGCGCCCGTCACCCACAGCT............................................................................................................. 21 0 6 0.17 1 1 0 0 0 0
...........................................CGCCCGTCACCCACAGCTAGC.......................................................................................................... 21 1 6 0.17 1 0 1 0 0 0
.................................AGGGACTATGCGCCCGTCACCCACAGCT............................................................................................................. 28 0 6 0.17 1 1 0 0 0 0
...................................GGACTATGCGCCCGTCACCCACAGCT............................................................................................................. 26 0 6 0.17 1 1 0 0 0 0
..................................GGGACTATGCGCCCGTCACCCACAGCT............................................................................................................. 27 0 6 0.17 1 1 0 0 0 0
................................CAGGGACTATGCGCCCGTCACCCACAGCT............................................................................................................. 29 0 6 0.17 1 1 0 0 0 0
.................................................TCACCCACAGCTATCTCT....................................................................................................... 18 0 6 0.17 1 1 0 0 0 0
.....................................................CCACAGCTATCTCTCGCTAACCAGACC.......................................................................................... 27 0 14 0.14 2 1 1 0 0 0
........................................................CAGCTATCTCTCGCTAACCAGACC.......................................................................................... 24 0 14 0.14 2 2 0 0 0 0
......................CGCCCTTCTGCAGGGACTATGCGCCCG......................................................................................................................... 27 1 8 0.13 1 1 0 0 0 0
......................CGCCCTTCTGCAGGGACTATGCGCCCGT........................................................................................................................ 28 1 8 0.13 1 1 0 0 0 0
.....................................................CCACAGCTATCTCTCGCTAAC................................................................................................ 21 0 16 0.13 2 1 1 0 0 0
.................CCACTTGCCCTTCTGCAGGTA.................................................................................................................................... 21 1 9 0.11 1 0 1 0 0 0
...............................................................CTCTCGCTAACCAGACCTCTAGGCCT................................................................................. 26 0 18 0.11 2 1 1 0 0 0
.................CCACTTGCCCTTCTGCAGGGACTAT................................................................................................................................ 25 0 9 0.11 1 0 1 0 0 0
........................................................................................................CTTTTGAGCACCTGTCCTTACCT........................................... 23 0 10 0.10 1 0 1 0 0 0
.....................................................................................................TGGCTTTTGAGCACCTGTCCTTACC............................................ 25 0 10 0.10 1 1 0 0 0 0
..................................................................................................AGCTGGCTTTTGAGCACCTGTCCTT............................................... 25 0 10 0.10 1 1 0 0 0 0
..........................................................................................AGCGAACGAGCTGGCTTTTGA........................................................... 21 0 10 0.10 1 1 0 0 0 0
.................................................................................................GAGCTGGCTTTTGAGCACCTGTACT................................................ 25 1 10 0.10 1 0 1 0 0 0
......................................................................................................GGCTTTTGAGCACATGTCCTTACCT........................................... 25 1 10 0.10 1 1 0 0 0 0
...................................................................................................GCTGGCTTTTGAGCACCTGTCC................................................. 22 0 10 0.10 1 1 0 0 0 0
................................................................................................................................................GGCACAACCAGGGGCTGCGCTTTCTT 26 0 10 0.10 1 1 0 0 0 0
................................................................................................................................................GGCACAACCAGGGGCTGCGCTTTCT. 25 0 10 0.10 1 1 0 0 0 0
...................................................................................................GCTGGCTTTTGAGCTCCTGTCCTTACCT........................................... 28 1 10 0.10 1 1 0 0 0 0
....................................................................................................CTGGCTTTTGAGCACCTGTCCTTAACT........................................... 27 1 10 0.10 1 0 1 0 0 0
....................................................................................................CTGGCTTTTGAGCACCTGTACT................................................ 22 1 10 0.10 1 0 1 0 0 0
....................................................................................................CTGGCTTTTGAGCACCTGTCCT................................................ 22 0 10 0.10 1 1 0 0 0 0
....................................................................................................CTGGCTTTTGAGCACCTGTCCTTACC............................................ 26 0 10 0.10 1 1 0 0 0 0
................................................................................................CGAGCTGGCTTTTGAGCACCTGTCCTT............................................... 27 0 10 0.10 1 1 0 0 0 0
.....................................................................................................TGGCTTTTGAGCACCTGTCCT................................................ 21 0 10 0.10 1 1 0 0 0 0
......................................................................................................GGCTTTTGAGCACCTGTCCTTACC............................................ 24 0 10 0.10 1 1 0 0 0 0
...................................................................................................GCTGGCTTTTGAGCACCTGTCCTT............................................... 24 0 10 0.10 1 1 0 0 0 0
.....................................................................................................TGGCTTTTGAGCACCTGTCCTTACCTG.......................................... 27 1 10 0.10 1 1 0 0 0 0
...........................................................................................................................................TCCGCGGCACAACCAGGGGCT.......... 21 0 11 0.09 1 0 1 0 0 0
..............................................................................................................................................GCGGCACAACCAGGGGCTGCGCTT.... 24 0 11 0.09 1 0 0 1 0 0
....................................................................................................................................CCGGGGCTCCGCGGCACAACC................. 21 0 11 0.09 1 1 0 0 0 0
.......................................................................................CTGAGCGACCGAGCTGGC................................................................. 18 2 12 0.08 1 0 1 0 0 0
.................................................................................................................................................GCACAACCAGGGGCTGCGCTTT... 22 0 13 0.08 1 0 1 0 0 0
........................................................CAGCTATCTCTCGCTAACCAGACCGC........................................................................................ 26 1 14 0.07 1 0 1 0 0 0
........................................................CAGCTATCTCTCGCTAACCAGACTT......................................................................................... 25 1 14 0.07 1 0 1 0 0 0
........................................................CAGCTATCTCTCGCTAACCAGACTTCT....................................................................................... 27 1 14 0.07 1 0 1 0 0 0
........................................................CAGCTATCTCTCGATAACCAGACCT......................................................................................... 25 1 14 0.07 1 0 1 0 0 0
........................................................CAGCTATCTCTCGCTAACCAGACCA......................................................................................... 25 1 14 0.07 1 0 1 0 0 0
........................................................CAGCTATCTCTCGCTAACCAGACGT......................................................................................... 25 1 14 0.07 1 0 1 0 0 0
.....................................................CCACAGCTATCTCTCGCTAACCAGAC........................................................................................... 26 0 14 0.07 1 0 1 0 0 0
..........................................................GCTATCTCTCGCTAACCAGACCT......................................................................................... 23 0 14 0.07 1 1 0 0 0 0
.....................................................CCACAGCTATCTCTCGCTAAACAGACCT......................................................................................... 28 1 14 0.07 1 0 1 0 0 0
....................................................CCCACAGCTATCTCTCGCTAACCAGACCG......................................................................................... 29 1 14 0.07 1 0 1 0 0 0
.....................................................CCACAGCTATCTCTCGCTAACCAGACGT......................................................................................... 28 1 14 0.07 1 0 1 0 0 0
......................................................CACAGCTATCTCTCGCTAACCAGA............................................................................................ 24 0 14 0.07 1 1 0 0 0 0
.......................................................ACAGCTATCTCTCGCTAACCAGAACT......................................................................................... 26 1 15 0.07 1 0 1 0 0 0
.....................................................CCACAGCTATCTCTCGCTAACCAGAACT......................................................................................... 28 1 15 0.07 1 0 1 0 0 0
........................................................CAGCTATCTCTCGCTAACCAGAACT......................................................................................... 25 1 15 0.07 1 0 1 0 0 0
........................................................CAGCTATCTCTCGATAACCAGAACT......................................................................................... 25 2 15 0.07 1 0 1 0 0 0
.................................................................CTCGCTAACCAGACCTCTAGGCCTTAGCG............................................................................ 29 0 17 0.06 1 0 1 0 0 0
.............................................................ATCTCTCGCTAACCAGACCT......................................................................................... 20 0 18 0.06 1 0 0 0 1 0
...................................................................CGCTAACCAGACCTCTAGGCC.................................................................................. 21 0 18 0.06 1 0 1 0 0 0
...............................................................CTCTCGCTAACCAGACCTCTAGGCGT................................................................................. 26 1 18 0.06 1 0 1 0 0 0
.................................................................CTCGCTAACCAGACCTCTAGGCCGT................................................................................ 25 1 18 0.06 1 0 1 0 0 0
..................................................................TCGCTAACCAGACCTCTAGGC................................................................................... 21 0 18 0.06 1 1 0 0 0 0
.................................................................CTCGCAAACCAGACCTCTAGGCCTT................................................................................ 25 1 18 0.06 1 0 1 0 0 0
......................................................................................................................TCCTTACCTTCTCTCCGGGGC............................... 21 0 18 0.06 1 0 1 0 0 0
.................................................................CTCGCTAACCAGACCTCTAGGCCTT................................................................................ 25 0 18 0.06 1 0 0 1 0 0
...................................................................CGCTAACCAGACCTCTAGGC................................................................................... 20 0 18 0.06 1 0 1 0 0 0
.................................................................CTCGCTAACCAGGCCTCTAGG.................................................................................... 21 1 18 0.06 1 0 1 0 0 0
..............................................................TCTCTCGCTAACCAGACCTCTAGGCCT................................................................................. 27 0 18 0.06 1 1 0 0 0 0
...................................................................CGCTAACCAGACCTCTAGCCC.................................................................................. 21 1 18 0.06 1 0 1 0 0 0
.................................................................................................................ACCTGTCCTTACCTTCTCTCC.................................... 21 0 19 0.05 1 0 1 0 0 0
.....................................................................CTAATCAGACCTCTAGGCCTT................................................................................ 21 1 19 0.05 1 0 1 0 0 0
........................................................................TCCAGGCTTCTAGGCCTTA............................................................................... 19 3 20 0.05 1 1 0 0 0 0
...........................CTCTGCAGGGACTATGCGCCCGT........................................................................................................................ 23 1 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_2691:2190-2359 - dmo_353 ATGAGGATGTAAGAGGAGGTGAACGGGAAGACGTCCCTGATACGCGGGCAGTGGGTGTCGATAGAGAGCGATTGGTCTGGAGATCCGGAATCGCTTGCTCGACCGAAAACTCGTGGACAGGAATGGAAGAGAGGCCCCGAGGCGCCGTGTTGGTCCCCGACGCGAAAGAA
droWil2 scf2_1100000004967:856705-856743 + ATGAGGAAGAAAGAGGAATAGATGGTGAAGGAATCCTTG-----------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490155:34751-34755 - CGGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414609:38286-38328 + G-----------------------------------------------CAGTGGGACTGGGAAGAGAGAGGTTGCTCGAGAGATCTGGAA--------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ATGAGGATGTAAGAGGAGGTGAACGGGAAGACGTCCCTGATACGCGGGCAGTGGGTGTCGATAGAGAGCGATTGGTCTGGAGATCCGGAATCGCTTGCTCGACCGAAAACTCGTGGACAGGAATGGAAGAGAGGCCCCGAGGCGCCGTGTTGGTCCCCGACGCGAAAGAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................GTGGACAGGAATGGAAGAGAGG....................................22191.21231800005
................................................................................................................GTGGACAGGAATGGAAGAGAGGCC..................................24180.8916900025
................................................................................................................GTGGACAGGAATGGAAGAGAGGCCC.................................25180.8315900015
................................................................................................................GTGGACAGGAATGGAAGAGAGGC...................................23180.72131200001
.......................................................................TTGGTCTGGAGATCCGGAATCGCTTGC........................................................................27180.61111000001
.......................................................................TTGGTCTGGAGATCCGGAATCGCT...........................................................................24180.285400010
...................................................TGGGTGTCGATAGAGAGCGATTG................................................................................................23160.254400000
.....................................................................................................................CAGGAATGGAAGAGAGGCCC.................................20180.224200020
.................................................................................................................TGGACAGGAATGGAAGAGAGGC...................................22180.224400000
.......................................................................TTGGTCTGGAGATCCGGAATCGCTTG.........................................................................26180.173300000
.....................................................................................................................CAGGAATGGAAGAGAGGCCCC................................21180.173200010
...........................AAGACGTCCCTGATACGCGGG..........................................................................................................................21200.153200010
.........................................................TCGATAGAGAGCGATTGGTCTGG..........................................................................................23140.142100001
...................................................TGGGTGTCGATAGAGAGCGATTGGTC.............................................................................................26140.142110000
...................................................TGGGTGTCGATAGAGAGCGATTGG...............................................................................................24150.132200000
.............AGGAGGTGAACGGGAAGACGTC.......................................................................................................................................2290.111100000
.......................................................................TTGGTCTGGAGATCCGGAATCGCTC..........................................................................25180.112200000
.......................................................................TTGGTCTGGAGATCCGGAATCGC............................................................................23180.112200000
.....................................................................................................................CAGGAATGGAAGAGAGGCCCCG...............................22180.112200000
.......................................................................TTGGTCTGGAGATCCGGAATCGCTT..........................................................................25180.112200000
..................GTGAACGGGAAGACGTCCCTGATC................................................................................................................................2490.111000001
....................................................................................................................ACAGGAATGGAAGAGAGGCCC.................................21180.112000020
..................GTGAACGGGAAGACGTCCCTGA..................................................................................................................................2290.111100000
.............................................................................................CTTGCTCGACCGAAAACTCGT........................................................21100.101100000
....................................................................................CCGGAATCGCTTGCTCGACCG.................................................................21100.101100000
......................................................................................GGAATCGCTTGCTCGACCGAAAACA...........................................................25100.101100000
...............................................................................................TGCTCGACCGAAAACTCGTGG......................................................21100.101100000
........................................................................................................................................CCGAGGCGCCGTGTTGGTCCC.............21110.091000010
.....................................................................................................................CAGGAATGGAAGAGAGGCCCCGAGGCGCC........................29110.091100000
.........................................................TCGATAGAGAGCGATTGGTCTGGAG........................................................................................25140.071100000
.........................................................TCGATAGAGAGCGATTGGTCTGGATT.......................................................................................26140.071100000
..............................................................................................................TCGTGGACAGGAATGGAAGAGAGGC...................................25150.071100000
..............................................................................................................TCGTGGACAGGAATGGAAGAGAGG....................................24160.061100000
...............................................................................................................CGTGGACAGGAATGGAAGAGA......................................21170.061100000
.........................................................................................................................AATGGAAGAGAGGCCCCGAGGC...........................22180.061000010
.....................................................................................................................CAGGAATGGAAGAGAGGCCCCGAGGC...........................26180.061000010
........................................................................TGGTCTGGAGATCCGGAATCGCTTGC........................................................................26180.061100000
................................................................................................................GTGGACAGGAATGGAAGAGAGGCCCC................................26180.061000001
................................................................AGAGCGATTGGTCTGGAGATC.....................................................................................21180.061100000
.......................................................................TTGGTCTGGAGATCCGGAAT...............................................................................20180.061000010
............................................................................CTGGAGATCCGGAATCGCTTG.........................................................................21180.061100000
..........................................................................................................................ATGGAAGAGAGGCCCCGAGGC...........................21180.061000010
......................................................................................................................AGGAATGGAAGAGAGGCCCCGA..............................22180.061100000
........................................................................TGGTCTGGAGATCCGGAATCGCT...........................................................................23180.061100000
.....................................................................................................................CAGGAATGGAAGAGAGGCCCCGAGGCG..........................27180.061100000
......................................................................................................................AGGAATGGAAGAGAGGCCCCGAGGCG..........................26180.061100000
........................................................................TGGTCTGGAGATCCGGAATCGC............................................................................22180.061100000
.....................................................................................................................CAGGAATGGAAGAGAGGCCCCGAG.............................24180.061100000
................................................................................................................GTGGACAGGAATGGAAGAGAG.....................................21190.051100000
...................................................TGGGTGTCGATAGAGAGCGA...................................................................................................20190.051000001
..................................................................................ATCCGGAATCGCTTGCTCGAC...................................................................21200.051000010
droWil2
ATGAGGAAGAAAGAGGAATAGATGGTGAAGGAATCCTTG-----------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................AATAGATGGTGAAGGAATCCT.....................................................................................................................................21200.15301002
.TGAGGAAGAAAGAGGAATAGATGG.................................................................................................................................................24200.10202000
.......AGAAAGAGGAATAGATGGTGAAGGA..........................................................................................................................................25200.10202000
.........AAAGAGGAATAGATGGTGAAGGAAT........................................................................................................................................25200.05101000
...............GAATAGATGGTGAAGGAATCCTTG-----------------------------------------------------------------------------------------------------------------------------------24200.05100010
ATGAGGAAGAAAGAGGAA........................................................................................................................................................18200.05101000
..........AAGAGGAATAGATGGTGAAGGAATCCT.....................................................................................................................................27200.05101000
...........AGAGGAATAGATGGTGAAGGAATC.......................................................................................................................................24200.05100010
droEle1
CGGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
G-----------------------------------------------CAGTGGGACTGGGAAGAGAGAGGTTGCTCGAGAGATCTGGAA--------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/17/2015 at 10:03 PM