dmo_352

Name	Class	Family	Strand
Galileo_DM	DNA	P	-

Name

Class

Family

Strand

Galileo_DM

DNA

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCTTCGGGAGGCGCGGCGTCGAGTATGGGCGGCCGCGAGTTACCCGCCGGTCACTATACACACACACATACGTACATGAGTGACTCGCCGGTCACAGCGACACACATACATGTGCACACTTACTTGTGCTCACGTATGAGCCTCCGAGTGGCAACTTATACATACATACTCGCTGCTGCTTGTCGTCAGCATGAAAACGGAATAAAGTTCAGTAGATTGTTCATTTGACTCGAAACAAGACGTCTTTTAT ***************************************************************************....(((((....)))))((((((....(((((.((.(((((......))))).)).))))).(((.......))).................)))))).************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M060 embryo	M046 female body	V041 embryo	V110 male body
.............................................................................................................................................................TATACATACATACTCGCTGC..........................................................................	20	0	19	0.11	2	2	0	0	0
..................................................................................GACTCGCCGGTTACAGCGACACA..................................................................................................................................................	23	1	16	0.06	1	1	0	0	0
.............................................................................TGAGTGACTCGCCGGTCACAGCGACAC...................................................................................................................................................	27	0	16	0.06	1	0	1	0	0
.........................................................................TACATGAGTGACTCGCCGGTCACAGC........................................................................................................................................................	26	0	16	0.06	1	0	1	0	0
..................................................................................................................................TCACGTATGAGCCTCCGAGT.....................................................................................................	20	0	17	0.06	1	0	0	1	0
..................................................................ACATACGTACATGAGTGACTCGCC.................................................................................................................................................................	24	0	17	0.06	1	1	0	0	0
...............................................................................................CAGCGACACACATACATGTGC.......................................................................................................................................	21	0	17	0.06	1	1	0	0	0
.............................................................CACACACATACGTACATGAGTGAC......................................................................................................................................................................	24	0	17	0.06	1	1	0	0	0
........................................................................................................................................................................ACTCGCTGCTGCTTGTCGTCAGCAT..........................................................	25	0	18	0.06	1	0	1	0	0
.......................................................AATACACACACACATACGTACATGAG..........................................................................................................................................................................	26	1	19	0.05	1	1	0	0	0
.............................................................CACACACATACGTACATGAGT.........................................................................................................................................................................	21	0	19	0.05	1	1	0	0	0
.............................................................................................................................................................TATTCATACATACTCGCTGC..........................................................................	20	1	19	0.05	1	1	0	0	0
............................................................AGACACACATACGTACATGAGT.........................................................................................................................................................................	22	1	19	0.05	1	1	0	0	0
.............................................................................................................................................................TATACATACATACTCGCTGCAA........................................................................	22	2	19	0.05	1	1	0	0	0
...........................................................................................................TACATGTGCACACTTACTTGC...........................................................................................................................	21	1	20	0.05	1	1	0	0	0
......................................................................................................ACACATACATGTGCACACT..................................................................................................................................	19	0	20	0.05	1	1	0	0	0
................................................................................................................................................................................................................................TTTGACTCGAAACAAGACGTCTTTC..	25	1	20	0.05	1	0	0	0	1

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTCTTCGGGAGGCGCGGCGTCGAGTATGGGCGGCCGCGAGTTACCCGCCGGTCACTATACACACACACATACGTACATGAGTGACTCGCCGGTCACAGCGACACACATACATGTGCACACTTACTTGTGCTCACGTATGAGCCTCCGAGTGGCAACTTATACATACATACTCGCTGCTGCTTGTCGTCAGCATGAAAACGGAATAAAGTTCAGTAGATTGTTCATTTGACTCGAAACAAGACGTCTTTTAT
*****************************************************************************....(((((....)))))((((((....(((((.((.(((((......))))).)).))))).(((.......))).................)))))).**************************************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M060
embryo

M046
female body

V041
embryo

V110
male body

.............................................................................................................................................................TATACATACATACTCGCTGC..........................................................................

0.11

..................................................................................GACTCGCCGGTTACAGCGACACA..................................................................................................................................................

0.06

.............................................................................TGAGTGACTCGCCGGTCACAGCGACAC...................................................................................................................................................

0.06

.........................................................................TACATGAGTGACTCGCCGGTCACAGC........................................................................................................................................................

0.06

..................................................................................................................................TCACGTATGAGCCTCCGAGT.....................................................................................................

0.06

..................................................................ACATACGTACATGAGTGACTCGCC.................................................................................................................................................................

0.06

...............................................................................................CAGCGACACACATACATGTGC.......................................................................................................................................

0.06

.............................................................CACACACATACGTACATGAGTGAC......................................................................................................................................................................

0.06

........................................................................................................................................................................ACTCGCTGCTGCTTGTCGTCAGCAT..........................................................

0.06

.......................................................AATACACACACACATACGTACATGAG..........................................................................................................................................................................

0.05

.............................................................CACACACATACGTACATGAGT.........................................................................................................................................................................

0.05

.............................................................................................................................................................TATTCATACATACTCGCTGC..........................................................................

0.05

............................................................AGACACACATACGTACATGAGT.........................................................................................................................................................................

0.05

.............................................................................................................................................................TATACATACATACTCGCTGCAA........................................................................

0.05

...........................................................................................................TACATGTGCACACTTACTTGC...........................................................................................................................

0.05

......................................................................................................ACACATACATGTGCACACT..................................................................................................................................

0.05

................................................................................................................................................................................................................................TTTGACTCGAAACAAGACGTCTTTC..

0.05

GAGAAGCCCTCCGCGCCGCAGCTCATACCCGCCGGCGCTCAATGGGCGGCCAGTGATATGTGTGTGTGTATGCATGTACTCACTGAGCGGCCAGTGTCGCTGTGTGTATGTACACGTGTGAATGAACACGAGTGCATACTCGGAGGCTCACCGTTGAATATGTATGTATGAGCGACGACGAACAGCAGTCGTACTTTTGCCTTATTTCAAGTCATCTAACAAGTAAACTGAGCTTTGTTCTGCAGAAAATA ************************************************************************....(((((....)))))((((((....(((((.((.(((((......))))).)).))))).(((.......))).................)))))).***************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	M060 embryo	V041 embryo
..................................................................................................................................................................................CGAACAGCAGTCGTACTTTTGCCTT................................................	25	0	17	0.53	9	8	0	1	0
...................................................................................................................................................................................GAACAGCAGTCGTACTTTTGCCTTATTT............................................	28	0	16	0.31	5	5	0	0	0
.................................................................................................................................................................................ACGAACAGCAGTCGTACTTTTGCCTT................................................	26	0	17	0.24	4	4	0	0	0
........................................AATGGGCGGCCAGTGATATGTGTGT..........................................................................................................................................................................................	25	0	5	0.20	1	0	1	0	0
................................................................................................................................................GGCTCACCGTTGAATATGTATGTAT..................................................................................	25	0	16	0.19	3	0	3	0	0
..............................................................................................................................................GAGGCTCACCGTTGAATATGTATGTAT..................................................................................	27	0	16	0.19	3	0	2	1	0
.............................................................................................................................................GGAGGCTCACCGTTGAATATGTATG.....................................................................................	25	0	16	0.19	3	2	1	0	0
............................................................................................................................................CGGAGGCTCACCGTTGAATATGTATGT....................................................................................	27	0	16	0.19	3	1	2	0	0
.....................................................................................................................................................................................ACAGCAGTCGTACTTTTGCCTTATTT............................................	26	0	17	0.18	3	2	0	1	0
..............................................................................................................................................GAGGCTCACCGTTGAATATGTATGT....................................................................................	25	0	16	0.13	2	1	1	0	0
...............................................................................................................................................AGGCTCACCGTTGAATATGTATG.....................................................................................	23	0	16	0.13	2	2	0	0	0
.............................................................................................................................................GGAGGCTCACCGTTGAATATGTATGT....................................................................................	26	0	16	0.13	2	0	2	0	0
......................................................................................................................................................................................CAGCAGTCGTACTTTTGCCTTATTT............................................	25	0	17	0.12	2	2	0	0	0
...................................................................................................................................................................................GAACAGCAGTCGTACTTTTGCCTT................................................	24	0	17	0.12	2	2	0	0	0
.................................GGCGCTCAATGGGCGGTCAGTGAT..................................................................................................................................................................................................	24	1	10	0.10	1	0	0	0	1
.........TCCGCGCCGCAGCTCATACCC.............................................................................................................................................................................................................................	21	0	20	0.10	2	0	0	2	0
...............CCGCTGCTCCTACCCTCCGG........................................................................................................................................................................................................................	20	3	20	0.10	2	0	0	2	0
..................................................................................................................................................................................TGAACAGCAGTCGTACTTTTGCCTTAT..............................................	27	1	16	0.06	1	1	0	0	0
................................................................................................................................................GGCTCACCGTTGAATATGTATGT....................................................................................	23	0	16	0.06	1	0	0	1	0
..................................................................................................................................................................................CGAACAGCAGTCGTACTTTTGCCTTATT.............................................	28	0	16	0.06	1	0	0	1	0
....................................................................................................................................................CACCGTTGAATATGTATGTATGAGC..............................................................................	25	0	16	0.06	1	0	1	0	0
.............................................................................................................................................GGAGGCTCACCGTTGAATATGTATGTAT..................................................................................	28	0	16	0.06	1	0	1	0	0
............................................................................................................................................CGGAGGCTCACCGTTGAATATGTAT......................................................................................	25	0	16	0.06	1	1	0	0	0
..........................................................................................................................................CTCGGAGGCTCACCGTTGAATAT..........................................................................................	23	0	16	0.06	1	1	0	0	0
......................................................................................................................................................CCGTTGAATATGTATGTATGAGCGA............................................................................	25	0	16	0.06	1	0	0	1	0
...............................................................................................................................................AGGCTCACCGTTGAATATATATGTAT..................................................................................	26	1	16	0.06	1	0	1	0	0
.............................................................................................................................................GGAGGCTCACCGTTGAATATTTATGT....................................................................................	26	1	16	0.06	1	0	1	0	0
...............................................................................................................................................AGGCTCACCGTTGAATATGTATGTAT..................................................................................	26	0	16	0.06	1	0	1	0	0
............................................................................................................................................CGGAGGCTCACCGTTGAATATGTATGTAT..................................................................................	29	0	16	0.06	1	1	0	0	0
......................................................................................................................................................CCGTTGAATATGTAAGTATGAGCGA............................................................................	25	1	16	0.06	1	0	0	1	0
.............................................................................................................................................GGAGGCTCACCGTTGAATATGTAGG.....................................................................................	25	1	16	0.06	1	0	0	1	0
..............................................................................................................................................GAGGCTCACCGTTGAGTATGTATGTAT..................................................................................	27	1	16	0.06	1	1	0	0	0
...................................................................................................................................................TCACCGTTGAATATGTATGTATGAGC..............................................................................	26	0	16	0.06	1	0	1	0	0
............................................................................................................................................CGGAGGCTCACCGTTGAATATGTATG.....................................................................................	26	0	16	0.06	1	1	0	0	0
......................................................................................................................................................................................CAGCAGTCGTACTGTTGCCTTATTT............................................	25	1	17	0.06	1	1	0	0	0
...................................................................................................................................................................................GAACAGCAGTCGTACTTTTGCCT.................................................	23	0	17	0.06	1	1	0	0	0
................................................................................................................................................................................GACGAACAGCAGTCGTACTTTTGCCTT................................................	27	0	17	0.06	1	1	0	0	0
........................................................................................................................................................................................GCAGTCGTACTTTTGCCTTATT.............................................	22	0	17	0.06	1	1	0	0	0
......................................................................................................................................................................................CAGCAGTCGTACTTTTGCCTTATT.............................................	24	0	17	0.06	1	0	0	0	1
.....................................................................................................................................................................................ACAGCAGTCGTACTTTTGCCTTATT.............................................	25	0	17	0.06	1	1	0	0	0
..........................................................................................................................................................TGAATATGTATGTATGAGCGACGAC........................................................................	25	0	17	0.06	1	1	0	0	0
......................................................................................................................................................................................CAGCGGTCGTACTTTTGCCTTATTT............................................	25	1	17	0.06	1	1	0	0	0
...................................................................................................................................................................................GAACAGCAGTCGTACTTTTGCCTTA...............................................	25	0	17	0.06	1	1	0	0	0
........................................................................................................................................................................................GCAGTCGTACTTTTGCCTTATTT............................................	23	0	17	0.06	1	1	0	0	0
.......................................................................................................................................................................................AGCAGTCGTACTTTTGCCTTATTT............................................	24	0	17	0.06	1	1	0	0	0
........................................................................................GGCCAGTGTCGCTGTGTGTATTT............................................................................................................................................	23	1	18	0.06	1	0	1	0	0
.......................................................................................CGGCCAGTGTCGCTGTGTGT................................................................................................................................................	20	0	18	0.06	1	1	0	0	0
..................................................................................................................................AGTGCCTTCTCGGAGCCTC......................................................................................................	19	3	19	0.05	1	0	0	0	1
...................................................................................................................................................................ATGTATGAGCGACGACGAACAGCAGT..............................................................	26	0	19	0.05	1	1	0	0	0
.....................................................................................................................................................................GTATGAGCGACGACGAACAGCAGT..............................................................	24	0	19	0.05	1	1	0	0	0
.................................................................................................................ACGTGTGAATGAACACGAGTGCAT..................................................................................................................	24	0	19	0.05	1	0	1	0	0
..................................................CAGTGATATGTGTGTGTGTATGCAT................................................................................................................................................................................	25	0	19	0.05	1	0	1	0	0
....................................................................................................................................................................TGTATGAGCGACGACGAACAGCAGT..............................................................	25	0	19	0.05	1	1	0	0	0
.......................................................................................CGGTCAGTGTCGGTGTGTGTA...............................................................................................................................................	21	2	20	0.05	1	1	0	0	0
.............................................................................................................................................................................................................................AGTAAACTGAGAAGTGTTCTG.........	21	3	20	0.05	1	1	0	0	0
..............................................................................................................................................................................................................................GTAAACTGAGCTTTGTTCTGCAGA.....	24	0	20	0.05	1	1	0	0	0

GAGAAGCCCTCCGCGCCGCAGCTCATACCCGCCGGCGCTCAATGGGCGGCCAGTGATATGTGTGTGTGTATGCATGTACTCACTGAGCGGCCAGTGTCGCTGTGTGTATGTACACGTGTGAATGAACACGAGTGCATACTCGGAGGCTCACCGTTGAATATGTATGTATGAGCGACGACGAACAGCAGTCGTACTTTTGCCTTATTTCAAGTCATCTAACAAGTAAACTGAGCTTTGTTCTGCAGAAAATA
**************************************************************************....(((((....)))))((((((....(((((.((.(((((......))))).)).))))).(((.......))).................)))))).*****************************************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

V110
male body

M060
embryo

V041
embryo

..................................................................................................................................................................................CGAACAGCAGTCGTACTTTTGCCTT................................................

0.53

...................................................................................................................................................................................GAACAGCAGTCGTACTTTTGCCTTATTT............................................

0.31

.................................................................................................................................................................................ACGAACAGCAGTCGTACTTTTGCCTT................................................

0.24

........................................AATGGGCGGCCAGTGATATGTGTGT..........................................................................................................................................................................................

0.20

................................................................................................................................................GGCTCACCGTTGAATATGTATGTAT..................................................................................

0.19

..............................................................................................................................................GAGGCTCACCGTTGAATATGTATGTAT..................................................................................

0.19

.............................................................................................................................................GGAGGCTCACCGTTGAATATGTATG.....................................................................................

0.19

............................................................................................................................................CGGAGGCTCACCGTTGAATATGTATGT....................................................................................

0.19

.....................................................................................................................................................................................ACAGCAGTCGTACTTTTGCCTTATTT............................................

0.18

..............................................................................................................................................GAGGCTCACCGTTGAATATGTATGT....................................................................................

0.13

...............................................................................................................................................AGGCTCACCGTTGAATATGTATG.....................................................................................

0.13

.............................................................................................................................................GGAGGCTCACCGTTGAATATGTATGT....................................................................................

0.13

......................................................................................................................................................................................CAGCAGTCGTACTTTTGCCTTATTT............................................

0.12

...................................................................................................................................................................................GAACAGCAGTCGTACTTTTGCCTT................................................

0.12

.................................GGCGCTCAATGGGCGGTCAGTGAT..................................................................................................................................................................................................

0.10

.........TCCGCGCCGCAGCTCATACCC.............................................................................................................................................................................................................................

0.10

...............CCGCTGCTCCTACCCTCCGG........................................................................................................................................................................................................................

0.10

..................................................................................................................................................................................TGAACAGCAGTCGTACTTTTGCCTTAT..............................................

0.06

................................................................................................................................................GGCTCACCGTTGAATATGTATGT....................................................................................

0.06

..................................................................................................................................................................................CGAACAGCAGTCGTACTTTTGCCTTATT.............................................

0.06

....................................................................................................................................................CACCGTTGAATATGTATGTATGAGC..............................................................................

0.06

.............................................................................................................................................GGAGGCTCACCGTTGAATATGTATGTAT..................................................................................

0.06

............................................................................................................................................CGGAGGCTCACCGTTGAATATGTAT......................................................................................

0.06

..........................................................................................................................................CTCGGAGGCTCACCGTTGAATAT..........................................................................................

0.06

......................................................................................................................................................CCGTTGAATATGTATGTATGAGCGA............................................................................

0.06

...............................................................................................................................................AGGCTCACCGTTGAATATATATGTAT..................................................................................

0.06

.............................................................................................................................................GGAGGCTCACCGTTGAATATTTATGT....................................................................................

0.06

...............................................................................................................................................AGGCTCACCGTTGAATATGTATGTAT..................................................................................

0.06

............................................................................................................................................CGGAGGCTCACCGTTGAATATGTATGTAT..................................................................................

0.06

......................................................................................................................................................CCGTTGAATATGTAAGTATGAGCGA............................................................................

0.06

.............................................................................................................................................GGAGGCTCACCGTTGAATATGTAGG.....................................................................................

0.06

..............................................................................................................................................GAGGCTCACCGTTGAGTATGTATGTAT..................................................................................

0.06

...................................................................................................................................................TCACCGTTGAATATGTATGTATGAGC..............................................................................

0.06

............................................................................................................................................CGGAGGCTCACCGTTGAATATGTATG.....................................................................................

0.06

......................................................................................................................................................................................CAGCAGTCGTACTGTTGCCTTATTT............................................

0.06

...................................................................................................................................................................................GAACAGCAGTCGTACTTTTGCCT.................................................

0.06

................................................................................................................................................................................GACGAACAGCAGTCGTACTTTTGCCTT................................................

0.06

........................................................................................................................................................................................GCAGTCGTACTTTTGCCTTATT.............................................

0.06

......................................................................................................................................................................................CAGCAGTCGTACTTTTGCCTTATT.............................................

0.06

.....................................................................................................................................................................................ACAGCAGTCGTACTTTTGCCTTATT.............................................

0.06

..........................................................................................................................................................TGAATATGTATGTATGAGCGACGAC........................................................................

0.06

......................................................................................................................................................................................CAGCGGTCGTACTTTTGCCTTATTT............................................

0.06

...................................................................................................................................................................................GAACAGCAGTCGTACTTTTGCCTTA...............................................

0.06

........................................................................................................................................................................................GCAGTCGTACTTTTGCCTTATTT............................................

0.06

.......................................................................................................................................................................................AGCAGTCGTACTTTTGCCTTATTT............................................

0.06

........................................................................................GGCCAGTGTCGCTGTGTGTATTT............................................................................................................................................

0.06

.......................................................................................CGGCCAGTGTCGCTGTGTGT................................................................................................................................................

0.06

..................................................................................................................................AGTGCCTTCTCGGAGCCTC......................................................................................................

0.05

...................................................................................................................................................................ATGTATGAGCGACGACGAACAGCAGT..............................................................

0.05

.....................................................................................................................................................................GTATGAGCGACGACGAACAGCAGT..............................................................

0.05

.................................................................................................................ACGTGTGAATGAACACGAGTGCAT..................................................................................................................

0.05

..................................................CAGTGATATGTGTGTGTGTATGCAT................................................................................................................................................................................

0.05

....................................................................................................................................................................TGTATGAGCGACGACGAACAGCAGT..............................................................

0.05

.......................................................................................CGGTCAGTGTCGGTGTGTGTA...............................................................................................................................................

0.05

.............................................................................................................................................................................................................................AGTAAACTGAGAAGTGTTCTG.........

0.05

..............................................................................................................................................................................................................................GTAAACTGAGCTTTGTTCTGCAGA.....

0.05

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droMoj3	scaffold_2747:2110-2360 -	dmo_352	CTCT------------TCGGGAGGCGCGGCGTCGAGTA-TGGGCGGCCGCGAGTTACCCGCCGGTCACTATACACACACACATACGTACATGAGTGACTCGCCGGTCACAGCGACACACATACATGTGCACACTTACTTGTGCTCACGTATGAGCCTCCGAGTGGCAACTTATACATACATACTCGCTGCTGCTTGTCGTCAGCATGAAAACGGAATAAAGTTCAGTAGATTGTTCATTTGACTCGAAACAAGACGTCTTTTAT
droVir3	scaffold_12736:510027-510077 +		CGCTAAAACTCCGCCATCATGGGGCGTCCCACCGGGTGGCGGGCGGCCACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000001063:3300-3388 +		AC---------------------------------------------------------------------ACATATGTACATATATACG------------------------TACATACATATTTACACACATACATGTATCCATATATAGACACTTACATATATACATATACATACATA----------------------------------------------------------------------------------
droKik1	scf7180000302698:1431372-1431416 +		TT---------------------------------------------------------------------G-----------------------------CCTGTCACAGGCACACACAGACACATATACACGCACATATGC-------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

CTCT------------TCGGGAGGCGCGGCGTCGAGTA-TGGGCGGCCGCGAGTTACCCGCCGGTCACTATACACACACACATACGTACATGAGTGACTCGCCGGTCACAGCGACACACATACATGTGCACACTTACTTGTGCTCACGTATGAGCCTCCGAGTGGCAACTTATACATACATACTCGCTGCTGCTTGTCGTCAGCATGAAAACGGAATAAAGTTCAGTAGATTGTTCATTTGACTCGAAACAAGACGTCTTTTAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................TATACATACATACTCGCTGC..........................................................................	20	19	0.11	2	0	0	0	0	2	0
..........................................................................................TGAGTGACTCGCCGGTCACAGCGACAC...................................................................................................................................................	27	16	0.06	1	1	0	0	0	0	0
......................................................................................TACATGAGTGACTCGCCGGTCACAGC........................................................................................................................................................	26	16	0.06	1	1	0	0	0	0	0
...............................................................................................................................................TCACGTATGAGCCTCCGAGT.....................................................................................................	20	17	0.06	1	0	1	0	0	0	0
...............................................................................ACATACGTACATGAGTGACTCGCC.................................................................................................................................................................	24	17	0.06	1	0	0	0	0	1	0
............................................................................................................CAGCGACACACATACATGTGC.......................................................................................................................................	21	17	0.06	1	0	0	0	0	1	0
..........................................................................CACACACATACGTACATGAGTGAC......................................................................................................................................................................	24	17	0.06	1	0	0	0	0	1	0
.....................................................................................................................................................................................ACTCGCTGCTGCTTGTCGTCAGCAT..........................................................	25	18	0.06	1	1	0	0	0	0	0
..........................................................................CACACACATACGTACATGAGT.........................................................................................................................................................................	21	19	0.05	1	0	0	0	0	1	0
..........................................................................................................................................................................TATACATACATACTCGCTGCAA........................................................................	22	19	0.05	1	0	0	0	0	1	0
........................................................................................................................TACATGTGCACACTTACTTGC...........................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
...................................................................................................................ACACATACATGTGCACACT..................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................TTTGACTCGAAACAAGACGTCTTTC..	25	20	0.05	1	0	0	0	0	0	1

droVir3

CGCTAAAACTCCGCCATCATGGGGCGTCCCACCGGGTGGCGGGCGGCCACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droWil2

AC---------------------------------------------------------------------ACATATGTACATATATACG------------------------TACATACATATTTACACACATACATGTATCCATATATAGACACTTACATATATACATATACATACATA----------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droKik1

TT---------------------------------------------------------------------G-----------------------------CCTGTCACAGGCACACACAGACACATATACACGCACATATGC-------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dmo_352

scaffold_2747:2160-2310 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-28.2	-27.8	-27.7