ID:

dmo_35

 Coordinate:

scaffold_6540:16546198-16546280 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-38.6 -38.6 -38.6

Flybase annnotation

intron [Dmoj\GI22892-in]

No Repeatable elements found

Sense Strand Reads

AAAAATACAAGTACTTTGTGGTCAGTGCTAAACAGAAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTTATAGTGCATACGAATGCCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCAAACTCAGCTTAATGAATACGCGAATCG

***********************************.....(((((((((..((((.(((((...((((((((((...(((((((((....))).)))))).......))))))))))...)))))))))..)))).))).)).....************************************ 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 M060

embryo

 V110

male body		 V056

head

 V049

head

 V041

embryo
.............................................................................................................GAAGCTCGTCTCTACAGGTATCT................................................... 23 0 1 11045.00 11045 4527 4327 1373 307 217 294
.............................................................................................................GAAGCTCGTCTCTACAGGTATC.................................................... 22 0 1 1737.00 1737 586 914 154 45 35 3
.............................................................................................................GAAGCTCGTCTCTACAGGTATCC................................................... 23 1 1 921.00 921 0 918 2 1 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTAT..................................................... 21 0 1 869.00 869 604 13 158 51 40 3
..................................................CTACCCTGTAGTTCCGGGCTTTTG............................................................................................................. 24 0 1 555.00 555 431 66 4 16 17 21
...................................................TACCCTGTAGTTCCGGGCTTTTG............................................................................................................. 23 0 1 507.00 507 415 42 10 14 9 17
.............................................................................................................GGAGCTCGTCTCTACAGGTATCT................................................... 23 1 1 311.00 311 3 308 0 0 0 0
..............................................................................................................AAGCTCGTCTCTACAGGTATCT................................................... 22 0 1 276.00 276 249 10 5 4 5 3
...................................................TACCCTGTAGTTCCGGGCTTTT.............................................................................................................. 22 0 1 114.00 114 105 6 1 1 1 0
.............................................................................................................GAATCTCGTCTCTACAGGTATCT................................................... 23 1 1 108.00 108 7 98 2 0 1 0
...................................................TACCCTGTAGTTCCGGGCTTT............................................................................................................... 21 0 1 96.00 96 82 9 1 2 2 0
..................................................CTACCCTGTAGTTCCGGGCTT................................................................................................................ 21 0 1 88.00 88 69 4 2 5 8 0
..................................................CTACCCTGTAGTTCCGGGCTTTT.............................................................................................................. 23 0 1 79.00 79 70 7 2 0 0 0
....................................................ACCCTGTAGTTCCGGGCTTTTG............................................................................................................. 22 0 1 76.00 76 74 2 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTA...................................................... 20 0 1 72.00 72 35 5 21 5 6 0
..................................................CTACCCTGTAGTTCCGGGCTTT............................................................................................................... 22 0 1 71.00 71 60 4 1 3 3 0
.............................................................................................................GGAGCTCGTCTCTACAGGTATCC................................................... 23 2 1 65.00 65 0 65 0 0 0 0
.............................................................................................................GGAGCTCGTCTCTACAGGTATC.................................................... 22 1 1 57.00 57 0 57 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTATCTT.................................................. 24 1 1 50.00 50 22 13 10 2 1 2
.............................................................................................................GTAGCTCGTCTCTACAGGTATCT................................................... 23 1 1 49.00 49 0 48 0 1 0 0
..............................................................................................................AAGCTCGTCTCTACAGGTATC.................................................... 21 0 1 39.00 39 36 2 0 0 1 0
..............................................................................................................AAGCTCGTCTCTACAGGTAT..................................................... 20 0 1 34.00 34 34 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGT....................................................... 19 0 1 32.00 32 15 0 13 2 2 0
.............................................................................................................TAAGCTCGTCTCTACAGGTATCT................................................... 23 1 1 29.00 29 9 19 0 0 1 0
.............................................................................................................GAAGCTCGTCTCTACAGGGATCT................................................... 23 1 1 28.00 28 3 8 4 4 6 3
.............................................................................................................GAAGCTCGTCTGTACAGGTATCT................................................... 23 1 1 27.00 27 26 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACCGGTATCT................................................... 23 1 1 27.00 27 0 0 0 3 21 3
...................................................TACCCTGTAGTTCCGGGCTT................................................................................................................ 20 0 1 24.00 24 24 0 0 0 0 0
.............................................................................................................GAAGCTCGCCTCTACAGGTATCT................................................... 23 1 1 22.00 22 1 21 0 0 0 0
..................................................CTACCCTGTAGTTCCGGGCTTTTGT............................................................................................................ 25 0 1 20.00 20 6 5 5 1 0 3
.............................................................................................................GAAGCTCGTCTCTACAGGCATCT................................................... 23 1 1 20.00 20 2 3 7 7 0 1
.............................................................................................................GAAGCTCGTCTCTACAGGTATCTC.................................................. 24 0 1 20.00 20 1 16 2 0 0 1
.............................................................................................................GAAGCTCGTCTATACAGGTATCT................................................... 23 1 1 19.00 19 13 5 1 0 0 0
.............................................................................................................GAATCTCGTCTCTACAGGTATC.................................................... 22 1 1 17.00 17 0 17 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTATCA................................................... 23 1 1 17.00 17 10 1 5 0 1 0
.............................................................................................................GAATCTCGTCTCTACAGGTATCC................................................... 23 2 1 16.00 16 0 16 0 0 0 0
.............................................................................................................GAGGCTCGTCTCTACAGGTATCT................................................... 23 1 1 15.00 15 5 6 1 3 0 0
...................................................TACCCTGTAGTTCCGGGCTTTTGT............................................................................................................ 24 0 1 15.00 15 9 2 4 0 0 0
....................................................ACCCTGTAGTTCCGGGCTTTT.............................................................................................................. 21 0 1 15.00 15 15 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTAAAGGTATCT................................................... 23 1 1 15.00 15 3 12 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGTTATCT................................................... 23 1 1 14.00 14 4 8 2 0 0 0
.............................................................................................................GAACCTCGTCTCTACAGGTATCT................................................... 23 1 1 14.00 14 0 14 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTTTCT................................................... 23 1 1 13.00 13 1 11 0 1 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGAATCT................................................... 23 1 1 12.00 12 1 7 2 2 0 0
.............................................................................................................GAAGCGCGTCTCTACAGGTATCT................................................... 23 1 1 11.00 11 0 10 0 1 0 0
.............................................................................................................GAAGCTCGTCTCTACGGGTATCT................................................... 23 1 1 11.00 11 3 5 1 1 1 0
...............................................................................................................AGCTCGTCTCTACAGGTATCT................................................... 21 0 1 10.00 10 9 1 0 0 0 0
.............................................................................................................GAAGATCGTCTCTACAGGTATCT................................................... 23 1 1 10.00 10 2 0 3 3 0 2
.............................................................................................................GTAGCTCGTCTCTACAGGTATCC................................................... 23 2 1 10.00 10 0 10 0 0 0 0
..............................................................................................................GAACTCGTCTCTACAGGTATCT................................................... 22 2 1 9.00 9 0 9 0 0 0 0
............................................................................................................AGAAGCTCGTCTCTACAGGTAT..................................................... 22 0 1 9.00 9 4 0 4 0 0 1
.............................................................................................................GAAGTTCGTCTCTACAGGTATCT................................................... 23 1 1 9.00 9 0 8 0 0 1 0
.............................................................................................................GAAGCTCGTCTCTACAGGTATAT................................................... 23 1 1 9.00 9 0 6 1 2 0 0
..................................................CGACCCTGTAGTTCCGGGCTTTTG............................................................................................................. 24 1 1 9.00 9 0 9 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTCTCT................................................... 23 1 1 9.00 9 0 0 0 3 5 1
............................................................................................................CGAAGCTCGTCTCTACAGGTATCT................................................... 24 1 1 8.00 8 3 4 1 0 0 0
.............................................................................................................GAAGCTCGTCTCTACATGTATCT................................................... 23 1 1 8.00 8 1 3 0 2 2 0
.............................................................................................................GACGCTCGTCTCTACAGGTATCT................................................... 23 1 1 8.00 8 0 8 0 0 0 0
..............................................................................................................AAGCTCGTCTCTACAGGTATCC................................................... 22 1 1 8.00 8 0 8 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACTGGTATCT................................................... 23 1 1 8.00 8 1 6 0 0 0 1
.............................................................................................................GAAGCTCGTCTCTACAGGTATT.................................................... 22 1 1 7.00 7 1 2 4 0 0 0
.............................................................................................................GTAGCTCGTCTCTACAGGTATC.................................................... 22 1 1 7.00 7 0 7 0 0 0 0
.............................................................................................................AAAGCTCGTCTCTACAGGTATCT................................................... 23 1 1 6.00 6 1 4 0 0 0 1
.............................................................................................................GGATCTCGTCTCTACAGGTATCT................................................... 23 2 1 6.00 6 0 6 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTATCG................................................... 23 1 1 6.00 6 1 5 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGATATCT................................................... 23 1 1 6.00 6 2 3 1 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTACCT................................................... 23 1 1 6.00 6 2 2 1 0 0 1
.............................................................................................................GAAGCTCATCTCTACAGGTATCT................................................... 23 1 1 6.00 6 0 3 1 0 1 1
.............................................................................................................TAAGCTCGTCTCTACAGGTATCC................................................... 23 2 1 6.00 6 0 6 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGG........................................................ 18 0 1 6.00 6 4 1 0 0 1 0
.............................................................................................................GAAGCTCGTCTATACAGGTATC.................................................... 22 1 1 6.00 6 4 2 0 0 0 0
............................................................................................................AGAAGCTCGTCTCTACAGGTATCT................................................... 24 0 1 5.00 5 4 0 1 0 0 0
...................................................TACCCTGTGGTTCCGGGCTTTTG............................................................................................................. 23 1 1 5.00 5 5 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTATA.................................................... 22 1 1 5.00 5 1 3 0 0 1 0
.............................................................................................................GAAGCTCGCCTCTACAGGTATC.................................................... 22 1 1 5.00 5 0 5 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTCCAGGTATCT................................................... 23 1 1 5.00 5 0 0 0 1 3 1
............................................................................................................CGAAGCTCGTCTCTACAGGTATC.................................................... 23 1 1 5.00 5 2 1 1 0 1 0
.............................................................................................................GAAGCTCGCCTCTACAGGTATCC................................................... 23 2 1 5.00 5 0 5 0 0 0 0
..................................................CTACCCTGTAGTTCCGGGCT................................................................................................................. 20 0 1 5.00 5 3 0 0 1 1 0
.............................................................................................................GAAGCTCGTCCCTACAGGTATCT................................................... 23 1 1 5.00 5 2 2 1 0 0 0
.............................................................................................................GAAGCTCGTCTTTACAGGTATCT................................................... 23 1 1 5.00 5 0 4 0 1 0 0
.............................................................................................................GAAGCTCGTCTCTACAGTTATC.................................................... 22 1 1 5.00 5 0 5 0 0 0 0
.............................................................................................................GAAGCTCTTCTCTACAGGTATCT................................................... 23 1 1 5.00 5 0 3 1 1 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTAA..................................................... 21 1 1 5.00 5 0 0 3 2 0 0
.............................................................................................................TAAGCTCGTCTCTACAGGTATC.................................................... 22 1 1 5.00 5 2 3 0 0 0 0
.............................................................................................................GAAGCTCGTTTCTACAGGTATCT................................................... 23 1 1 5.00 5 1 2 0 2 0 0
....................................................ACCCTGTAGTTCCGGGCTTT............................................................................................................... 20 0 1 5.00 5 5 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTAC..................................................... 21 1 1 4.00 4 0 3 0 1 0 0
.............................................................................................................GAACCTCGTCTCTACAGGTATC.................................................... 22 1 1 4.00 4 0 4 0 0 0 0
.............................................................................................................CAAGCTCGTCTCTACAGGTATCT................................................... 23 1 1 4.00 4 1 2 0 0 0 1
.............................................................................................................GAAGTTCGTCTCTACAGGTATCC................................................... 23 2 1 4.00 4 0 4 0 0 0 0
.............................................................................................................GAAACTCGTCTCTACAGGTATCT................................................... 23 1 1 4.00 4 0 3 0 0 0 1
.............................................................................................................GAAGCTCGTCTCTACAGCTATCT................................................... 23 1 1 4.00 4 1 1 0 1 0 1
...................................................TACTCTGTAGTTCCGGGCTTTTG............................................................................................................. 23 1 1 4.00 4 0 4 0 0 0 0
.............................................................................................................GAAGCCCGTCTCTACAGGTATCT................................................... 23 1 1 4.00 4 1 1 0 0 1 1
.............................................................................................................GAAGCTCGTCTCTACAGGTATCTG.................................................. 24 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCCACAGGTATCT................................................... 23 1 1 4.00 4 1 2 0 1 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGGATCC................................................... 23 2 1 4.00 4 0 4 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACACGTATCT................................................... 23 1 1 4.00 4 0 1 0 0 2 1
.....................................................CCCTGTAGTTCCGGGCTTTTG............................................................................................................. 21 0 1 4.00 4 4 0 0 0 0 0
..................................................CTACCCTGTAGTTCCGGGCTTTTT............................................................................................................. 24 1 1 4.00 4 2 0 0 0 2 0
.............................................................................................................TAAGCTCGTCTCTACAGGTAT..................................................... 21 1 1 4.00 4 2 1 1 0 0 0
..................................................CTACCCTGTAGTTCCGGGCTTTTGC............................................................................................................ 25 1 1 4.00 4 0 4 0 0 0 0
.............................................................................................................GCAGCTCGTCTCTACAGGTATCT................................................... 23 1 1 3.00 3 1 0 0 0 2 0
.............................................................................................................GAAGCTCGTCTCTACAAGTATCT................................................... 23 1 1 3.00 3 1 0 0 0 2 0
.............................................................................................................GAAGCTGGTCTCTACAGGTATCT................................................... 23 1 1 3.00 3 1 2 0 0 0 0
..................................................CTATCCTGTAGTTCCGGGCTTTTG............................................................................................................. 24 1 1 3.00 3 0 3 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTAAAGGTATCC................................................... 23 2 1 3.00 3 0 3 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACTGGTATCC................................................... 23 2 1 3.00 3 0 3 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTATCTTT................................................. 25 2 1 3.00 3 1 1 0 1 0 0
.............................................................................................................GAAGCTCGTCTCTGCAGGTATCT................................................... 23 1 1 3.00 3 0 2 0 0 0 1
.............................................................................................................GAAGCTCGTCTCTACAGGTATAC................................................... 23 2 1 3.00 3 0 3 0 0 0 0
.............................................................................................................GAAGCTTGTCTCTACAGGTATCT................................................... 23 1 1 3.00 3 2 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTCCAGGTCT..................................................... 21 2 1 3.00 3 0 0 0 1 2 0
.............................................................................................................GAAGCTCGTCTCTACATGTATC.................................................... 22 1 1 3.00 3 0 2 0 1 0 0
.............................................................................................................GAAGCACGTCTCTACAGGTATCT................................................... 23 1 1 3.00 3 0 3 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGTTATCC................................................... 23 2 1 3.00 3 0 3 0 0 0 0
....................................................ACCCTGTAGTTCCGGGCTTTTGT............................................................................................................ 23 0 1 3.00 3 2 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTGTACAGGTATC.................................................... 22 1 1 3.00 3 3 0 0 0 0 0
..............................................................................................................AAGCTCGTCTCTACAGGTA...................................................... 19 0 1 3.00 3 3 0 0 0 0 0
.............................................................................................................GGAGCTCGTCTCTACAGGTAT..................................................... 21 1 1 3.00 3 0 3 0 0 0 0
.............................................................................................................GAAGCTCGGCTCTACAGGTATCT................................................... 23 1 1 3.00 3 1 2 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTTCAGGTATCT................................................... 23 1 1 3.00 3 0 0 1 1 0 1
..................................................CTACCCTGTAGTTCCGGGC.................................................................................................................. 19 0 1 3.00 3 1 2 0 0 0 0
.............................................................................................................GGAGCTCGTCTCTACAGGCATCT................................................... 23 2 1 3.00 3 0 3 0 0 0 0
..................................................CGACCCTGTAGTTCCGGGCTTTT.............................................................................................................. 23 1 1 3.00 3 0 3 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTGTCT................................................... 23 1 1 3.00 3 0 1 1 0 0 1
.............................................................................................................GAAGCTCGTCTCTACAGGTAGC.................................................... 22 1 1 2.00 2 0 1 0 1 0 0
.............................................................................................................GAACCTCGTCTCTACAGGTATCC................................................... 23 2 1 2.00 2 0 2 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTATAGGTATCT................................................... 23 1 1 2.00 2 0 2 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTATTC................................................... 23 2 1 2.00 2 0 2 0 0 0 0
.............................................................................................................GAAGCGCGTCTCTACAGGTATCC................................................... 23 2 1 2.00 2 0 2 0 0 0 0
.............................................................................................................TGAGCTCGTCTCTACAGGTATCT................................................... 23 2 1 2.00 2 0 2 0 0 0 0
.............................................................................................................GAAGCGCGTCTCTACAGGTATC.................................................... 22 1 1 2.00 2 0 1 0 1 0 0
.................................................................................................................CTCGTCTCTACAGGTATC.................................................... 18 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTAACT................................................... 23 1 1 2.00 2 0 1 1 0 0 0
...................................................TACCCTGTAGTTCCGGGC.................................................................................................................. 18 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................GACGCTCGTCTCTACAGGTATC.................................................... 22 1 1 2.00 2 0 2 0 0 0 0
...................................................TACCCTGTAGTTCCGGGCTTTTGA............................................................................................................ 24 1 1 2.00 2 2 0 0 0 0 0
.................................................................................................................CTCGTCTCTACAGGTATCT................................................... 19 0 1 2.00 2 2 0 0 0 0 0
..................................................CTACCCTGTAGTTCCGGGCTTGG.............................................................................................................. 23 2 1 2.00 2 2 0 0 0 0 0
...................................................TACCCTGTAGTTCCGGGCCTT............................................................................................................... 21 1 1 2.00 2 1 0 0 1 0 0
...................................................TACCCTGTAGTTCCGGGCTTTTT............................................................................................................. 23 1 1 2.00 2 2 0 0 0 0 0
..................................................CTACCCTGTAGGTCCGGGCTT................................................................................................................ 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................................GAAGCTAGTCTCTACAGGTATCT................................................... 23 1 1 2.00 2 1 0 1 0 0 0
............................................................................................................CGAAGCTCGTCTCTACAGGTAT..................................................... 22 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTCT..................................................... 21 1 1 2.00 2 0 0 1 0 1 0
.............................................................................................................GAAGCTCGTCTCTACAGGTTTCC................................................... 23 2 1 2.00 2 0 2 0 0 0 0
...................................................TACCCTGTAGTGCCGGGCTTT............................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................................GAAGCTCGTTTCTACAGGTATCC................................................... 23 2 1 2.00 2 0 2 0 0 0 0
..................................................CTACCCTGTAGTTCCTGGCTTTTG............................................................................................................. 24 1 1 2.00 2 1 1 0 0 0 0
..................................................CTATCCTGTAGTTCCGGGCTT................................................................................................................ 21 1 1 2.00 2 0 2 0 0 0 0
.............................................................................................................GGAGCTCGTCTCTACAGGTATAT................................................... 23 2 1 2.00 2 0 2 0 0 0 0
.............................................................................................................GAAGCTCGACTCTACAGGTATCT................................................... 23 1 1 2.00 2 1 0 0 0 0 1
.............................................................................................................GAAGCTCGTCTCAACAGGTATCT................................................... 23 1 1 2.00 2 0 2 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACTGGTATC.................................................... 22 1 1 2.00 2 0 2 0 0 0 0
...................................................TACCCTGTAGTTCCGGGCTTTG.............................................................................................................. 22 1 1 2.00 2 1 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAAGTATC.................................................... 22 1 1 2.00 2 0 2 0 0 0 0
.............................................................................................................GAAGCGCGTCTCTACCGGTATCT................................................... 23 2 1 2.00 2 0 0 0 1 1 0
.............................................................................................................GAAGCTCGTCACTACAGGTATCT................................................... 23 1 1 2.00 2 0 2 0 0 0 0
.............................................................................................................GAAGCTCGTCTCCACAGGTATC.................................................... 22 1 1 2.00 2 0 1 1 0 0 0
..................................................TTACCCTGTAGTTCCGGGCTTTTG............................................................................................................. 24 1 1 2.00 2 2 0 0 0 0 0
..................................................CTACCCTGTAGGTCCGGGCTTTTG............................................................................................................. 24 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................................GAAGCCCGTCTCTACAGGTATC.................................................... 22 1 1 2.00 2 1 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACCGGTAT..................................................... 21 1 1 2.00 2 0 0 0 1 1 0
................................................................................................................GCTCGTCTCTACAGGTATCT................................................... 20 0 1 2.00 2 1 1 0 0 0 0
.............................................................................................................GAAGCTCATCTCTACAGGTAT..................................................... 21 1 1 2.00 2 1 0 1 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGGAT..................................................... 21 1 1 2.00 2 1 1 0 0 0 0
..............................................................................................................GAACTCGTCTCTACAGGTATCC................................................... 22 3 1 2.00 2 0 2 0 0 0 0
...................................................TACCCTGTAGTTCCGGGCTTTTGC............................................................................................................ 24 1 1 2.00 2 0 2 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTATCTA.................................................. 24 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGCATCC................................................... 23 2 1 2.00 2 0 2 0 0 0 0
.............................................................................................................GAAGCTCGTCTGTACAGGTAT..................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................................GAAGCTCATCTCTACAGGTATCC................................................... 23 2 1 2.00 2 0 2 0 0 0 0
..................................................CTACCCTGTAGTTCTGGGCTTTTG............................................................................................................. 24 1 1 2.00 2 1 0 0 0 1 0
.............................................................................................................GGATCTCGTCTCTACAGGTATCC................................................... 23 3 1 2.00 2 0 2 0 0 0 0
.............................................................................................................GAAGCTCGTTTCTACAGGTATC.................................................... 22 1 1 2.00 2 0 2 0 0 0 0
..................................................CGACCCTTTAGTTCCGGGCTTT............................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................................AAGCTCGTCTCTACAGGTATCTT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GTATCTCGTCTCTACAGGTATCT................................................... 23 2 1 1.00 1 0 1 0 0 0 0
................................................................................................................GCTCGTCTCTACAGGTATC.................................................... 19 0 1 1.00 1 1 0 0 0 0 0
..................................................CTACCCTTTAGTTCCGGGCTTTTG............................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAAGCTGGTCTCTACAGGTATCC................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTTCAGGTAT..................................................... 21 1 1 1.00 1 0 0 0 1 0 0
.............................................................................................................TAATCTCGTCTCTACAGGTATC.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..................................................CGACTCTGTAGTTCCGGGCTTTTGT............................................................................................................ 25 2 1 1.00 1 0 1 0 0 0 0
..................................................CTACCCTGTAGCTCCGGGCTT................................................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0
...........................................................................................................CAGAAGCTCGTCTCTACAGGTA...................................................... 22 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................................GAAGCTCGTCTCTTCAGGGATC.................................................... 22 2 1 1.00 1 0 0 0 1 0 0
.....................................................................................TACGAATGCCATTGTCAATTATCA.......................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGATCGTCTCTACCGGTATCT................................................... 23 2 1 1.00 1 0 0 0 0 0 1
..............................................................................................................AAGCTCGTCTCTACAGGTATCTG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................TGCTCGTCTCTACAGGTATCT................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAATCTCCTCTCTACAGGTATCC................................................... 23 3 1 1.00 1 0 1 0 0 0 0
.............................................................................................................AAAGCTCGTCTCTACAGGTATCC................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACCGGGATCT................................................... 23 2 1 1.00 1 0 0 0 0 1 0
..............................................................................................................GAGCTCGTCTCTACAGGTATCT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................TAAGCTCGTCTCTACAGGAATCT................................................... 23 2 1 1.00 1 0 0 0 1 0 0
..............................................................................................................CAGTTCGTCTCTACCGGTATCT................................................... 22 3 1 1.00 1 0 1 0 0 0 0
..................................................CTACCCTGTAGTTCCGTGCTTTTGTTT.......................................................................................................... 27 1 1 1.00 1 0 0 0 1 0 0
..............................................................................................................AAGCTCGTCTCAACAGGTATCT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAGGCTCGTCTCTACAGGTATCC................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACACGTCT..................................................... 21 2 1 1.00 1 0 0 0 1 0 0
.............................................................................................................GAAGCTCGTGTCTACAGGTATCT................................................... 23 1 1 1.00 1 0 0 0 0 0 1
.............................................................................................................GAAGCTCGTCTCTACAGGCCT..................................................... 21 2 1 1.00 1 0 0 0 0 1 0
.............................................................................................................GAAGCTCGTCTCTAAAGGTGTCT................................................... 23 2 1 1.00 1 0 0 0 1 0 0
............................................................................................................GGAAGCTCGTCTCTACAGGTAT..................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................TACCCTGTAGTTTCGGGCTTT............................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................AAGCTCGTCTCTACAGGGATCT................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGAAT..................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GCAGCTCGTCTCTACCGGTAT..................................................... 21 2 1 1.00 1 0 0 0 0 1 0
.............................................................................................................GAAGCTCGTCTCTAGAGGTATCT................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACCGGTCTCT................................................... 23 2 1 1.00 1 0 0 0 0 1 0
.............................................................................................................GAAGCTCGTCTCTACAGGTATGCG.................................................. 24 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACCGGAATC.................................................... 22 2 1 1.00 1 0 0 0 0 0 1
.............................................................................................................CAAGCTCGTCTCTACAGGTATC.................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................CTACCCTGTAGATCCGGGCTT................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTCTCTC.................................................. 24 1 1 1.00 1 0 0 0 0 0 1
............................................................................................................CGAAGCTCGTCTCTACAGGTA...................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAACATCGTCTCTACAGGTATCT................................................... 23 2 1 1.00 1 0 0 0 1 0 0
.............................................................................................................GAAGCTCGTATCTACAGGTATC.................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGAGCGTCTCTACAGGTATCT................................................... 23 2 1 1.00 1 0 0 0 1 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGCATC.................................................... 22 1 1 1.00 1 0 0 0 1 0 0
.............................................................................................................GAAGCTCGTCTCTATAGGGAT..................................................... 21 2 1 1.00 1 0 0 0 1 0 0
...................................................TACCCCGTAGTTCCGGGCTTTT.............................................................................................................. 22 1 1 1.00 1 0 0 0 1 0 0
..................................................ATACCCTGTAGTTCCGGGCTTTT.............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................CTACCCTGTCGTTCCGGGCTTTT.............................................................................................................. 23 1 1 1.00 1 0 0 0 0 0 1
.............................................................................................................GAAGCTCGTCTCTAATGGTATCT................................................... 23 2 1 1.00 1 0 0 0 1 0 0
.............................................................................................................GAAGCACGGCTCGACAGGTATCT................................................... 23 3 1 1.00 1 0 0 0 1 0 0
..............................................................................................................AAGCTCGTCTCTACAGGT....................................................... 18 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTATCTGC................................................. 25 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTATCTGAG................................................ 26 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................................GAACTCGTCTCTACAGGTATC.................................................... 21 2 1 1.00 1 0 1 0 0 0 0
..................................................CTACCCTGTAGTTACGGTCTTT............................................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0
.............................................................................................................GACGCTCGTCTCTACAGGTAT..................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTAAAGGTATC.................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGGATC.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCGCCAGGT....................................................... 19 2 1 1.00 1 0 0 0 0 1 0
............................................................................................................TGAAGCTCGTCTCTACAGGTAT..................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACGGGTATC.................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTCAAAAGGTAGCT................................................... 23 3 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GACGCTCGTCTCTCCAGGGATCT................................................... 23 3 1 1.00 1 0 0 0 0 0 1
.............................................................................................................GAAGCTCGTCTCTACAGGTATTT................................................... 23 1 1 1.00 1 0 0 0 1 0 0
.............................................................................................................GTAGCTCGTCTCTACAGGTATCTT.................................................. 24 2 1 1.00 1 0 1 0 0 0 0
..............................................................................................................AAGCTCGTCTATACAGGTATCT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAATCTCGTCTCTGCAGGTATCT................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACATGTAT..................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAAGCTCGTCGCTACAGGCCTCT................................................... 23 3 1 1.00 1 0 0 0 0 1 0
.............................................................................................................GGAGCTCGTCTCTACAGCTATCT................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTTCAGGTGTCT................................................... 23 2 1 1.00 1 0 0 0 0 0 1
.............................................................................................................GAAGGTCGTCTCTACAGGTAT..................................................... 21 1 1 1.00 1 0 0 0 1 0 0
...................................................TACCCTGTAGTTCCGGGCT................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGCA...................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAATCTCGCCTCTACAGGTATCT................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACATGTATCC................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAACATCGTCTCTACAGGCATCT................................................... 23 3 1 1.00 1 0 0 0 1 0 0
...........................................................................................................ATGAAGCTCGTCTCTACAGGTAT..................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCCACCGGTATC.................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.............................................................................................................GGAGCTCGTCTCTACAGTTATCT................................................... 23 2 1 1.00 1 0 1 0 0 0 0
...................................................TGCCCTGTAGTTCCGGGCTTT............................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGCCCGTCTCTACAGTTCTCT................................................... 23 3 1 1.00 1 0 0 0 1 0 0
.....................................................................................................AATTATCTGAACCTCGTCGC.............................................................. 20 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAAGCTCGGCTCTTCAGGTATCT................................................... 23 2 1 1.00 1 0 0 0 0 0 1
.............................................................................................................GAAGCTCGTCTTTAAAGGTGTC.................................................... 22 3 1 1.00 1 0 0 0 1 0 0
..................................................TTACCCTGTAGTTCCGGGCTTT............................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGAATC.................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GGAGCTCGTCTCTACAGGTATCTC.................................................. 24 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................GCTCGTCTCTACAGGTATCC................................................... 20 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACATTTATC.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGCTCGTATATACAGGTATCT................................................... 23 2 1 1.00 1 0 0 0 0 1 0
.............................................................................................................GAATCTCGTCTCTACAGGGATCT................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGATTGTCTCTACAGGTAT..................................................... 21 2 1 1.00 1 0 0 0 1 0 0
............................................................................................................AGAAGCTCGTCTCTACAGGGATCT................................................... 24 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTCCTCAGGTCTCT................................................... 23 3 1 1.00 1 0 0 0 0 1 0
.............................................................................................................GATGCTCGTCTCTCCAGGTATCT................................................... 23 2 1 1.00 1 0 0 0 1 0 0
.............................................................................................................GAATCTCGTCTCTACAGGTATCTT.................................................. 24 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GGAGCTCGTCTCTACAGGGATCC................................................... 23 3 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGATCGACTCTACAGGTATCT................................................... 23 2 1 1.00 1 0 0 0 0 0 1
.............................................................................................................GACGCTCGTCTCTACAGGAATCT................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAATCTCGTCTCCACAGGTATCT................................................... 23 2 1 1.00 1 0 1 0 0 0 0
......................................................CCTGTAGTTCCGGGCTTTT.............................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGGATAT................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGCTATCC................................................... 23 2 1 1.00 1 0 1 0 0 0 0
...................................................TACCCTGTAGTTCCGGGCCTTTG............................................................................................................. 23 1 1 1.00 1 0 0 0 1 0 0
.....................................................CCCTGTAGTTCCGGGCTTTTGT............................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGGTTCT................................................... 23 2 1 1.00 1 0 0 0 0 0 1
...............................................................................................................AGCTCGTCTCTACAGGTATC.................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAAGCTCGTCTCTACAGGTATG.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GCAGCTCGTCTCTACATGTATCT................................................... 23 2 1 1.00 1 0 0 0 0 1 0
..................................................CTACCCTGTATTTCCGGGCTT................................................................................................................ 21 1 1 1.00 1 0 0 0 0 1 0
..................................................CTACCGTGTAGTTCCGGGCTTT............................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................AAAGCTCGTCTCTACAGGTATC.................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...................................................TACCCTGTAGTGCCGGGCTTTT.............................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...................................................TACCCTGTAGTGCCGGGCTTTTG............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAACCTCGTCGCTACAGGTATCT................................................... 23 2 1 1.00 1 0 0 0 0 1 0
.............................................................................................................GAAGCTTGTCTCTACAGGTAT..................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GAAGCGCGTTTCTACTGGTATCT................................................... 23 3 1 1.00 1 0 0 0 0 0 1
................................................ATCTACCCTGTAGTTCCGGGCTTTTG............................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0
.................................................GCTACCCTGTAGTTCCGGGCTTTTG............................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................AAGCTCGTCTCGACAGGTAT..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................TAAGCTCGTCTCTACAAGTATCT................................................... 23 2 1 1.00 1 0 0 0 1 0 0

Anti-sense strand reads

TTTTTATGTTCATGAAACACCAGTCACGATTTGTCTTTGCGAGGGCACTGGATGGGACATCAAGGCCCGAAAACAAATATCACGTATGCTTACGGTAACAGTTAATAGTCTTCGAGCAGAGATGTCCATAGAGTGTCCCATCTTTCTTTGTTGAGTTTGAGTCGAATTACTTATGCGCTTAGC

************************************.....(((((((((..((((.(((((...((((((((((...(((((((((....))).)))))).......))))))))))...)))))))))..)))).))).)).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total V110

male body
..............................................ATTGGAAGGGACGTCAAGG...................................................................................................................... 19 3 7 0.14 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6540:16546148-16546330 - dmo_35 confident ---AAAAA--T--ACAAGTACTTT--GT--------GGTCAGTGCTAAACAGA-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATAGTGCATA-CGA-----------ATGCCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCAA-A--CTCA-------GCTTAAT------GAATACGCGAATCG
droVir3 scaffold_13047:6141839-6142006 - dvi-mir-993 Known_mirbase ---ATAAG--TGGTCTCGTACTGG--GTGAAGTGGGGGTCAGTGAATAACAGA-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATAGTGCATT-CAA-----------ATGCCATTCTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCAA-A----------------------------------------
droGri2 scaffold_14906:11483309-11483497 - dgr_16 confident ---CAAAGCCGGGGCTCGGAGGGGCAGCGAAGTG-----AAGTGATATTCAGA-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TTAGTGCATT-CAA-----------ATGCCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACGAATAAAAATCAAGTGCAAAC-------------AAAT------AA
droWil2 scf2_1100000004902:11961208-11961346 + dwi_28 confident ---AAA--------------------------------------------AGAAAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTTTAAAGTGCATT----------TCCG-ATGCCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACAATGAC-----------GAC----------------AT------AA
dp5 2:19773750-19773907 - dps-mir-993 Known_mirbase ---A---------------------------------------------------ACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGCC-CGATGTATTTTCGAGTGTTTGTGTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCTG-AAAGTG-----A----AAAATGGACGTGAAAAT------GT
droPer2 scaffold_3:2522154-2522311 - dpe_345 confident ---A---------------------------------------------------ACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGCT-CGATGTATTTTCGAGTGTTTGTGTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCTG-AAAGTG-----A----AAAATGGACGCGAAAAT------GT
droAna3 scaffold_13340:5446728-5446861 - dan_322 confident ---AAT--------------------------------------------TGA-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGTT-CGATGCATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC----------------------------------------------
droBip1 scf7180000396708:3367350-3367485 + ---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TTATTGCGTT-C------------------------GATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACATTT-CAAGTG-----AGAAATAATT-GATGTG-------------
droKik1 scf7180000302619:315350-315496 + CTCAAT--------------------------------------------AGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATGGCGTC-CGA-----TGTCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTATG-AAAGTG-----A----AAA---------------------T
droFic1 scf7180000453835:35397-35530 + ---AAT--------------------------------------------TGC-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATGCCGCGTT-CGACGCACTGTCGCACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC----------------------------------------------
droEle1 scf7180000491278:1385230-1385380 + ---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TAATGGCGTT-CGATGCATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAGCGCTC-AAAGTGATCTA--AA--------------------------
droRho1 scf7180000769958:354-487 + ---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAACGGCGTT-CGGTGCATTGCCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAGC----------------------------------------------
droBia1 scf7180000302155:2068214-2068346 - ---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TAACTGCGTT-CGATGCA-TGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC----------------------------------------------
droTak1 scf7180000414682:65310-65443 + ---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-CGATGCATTGTCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC----------------------------------------------
droEug1 scf7180000408928:14407-14540 - ---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATGGCGTT-CGATGCATTGTCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC----------------------------------------------
dm3 chr3R:2602049-2602199 + dme-mir-993 Known_mirbase ---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-CGGCACATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACCTCAATA-TGAGTGAACTG--AA--------------------------
droSim2 3r:2496135-2496302 + dsi-mir-993 Known_mirbase ---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-CGGCGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACCTCAATGAAAAGTGAACTG--AAGTAACT------GAAAACGTGA----
droSec2 scaffold_6:2693186-2693356 + dse_361 confident ---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTTTCGGCGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACCTCAATGAAAAGTGAACTG--AAGTAACT------GAAAACGTGA--GT
droYak3 3R:7811356-7811491 - dya_20 confident ---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-CGACGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAATAAACCTCAA--------------------------------------------
droEre2 scaffold_4770:2845894-2846034 + der_245 confident ---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-CGACGC-TTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAATAAACCTCAAG-CCAAG-------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
---AAAAA--T--ACAAGTACTTT--GT--------GGTCAGTGCTAAACAGA-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATAGTGCATA-CGA-----------ATGCCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCAA-A--CTCA-------GCTTAAT------GAATACGCGAATCGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCT...................................................................23111045.0011045452729421730743271373
............................................................................................................................................GAAGCTCGTCTCTACAGGTATC....................................................................2211737.00173758633545914154
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCC...................................................................231921.0092100019182
............................................................................................................................................GAAGCTCGTCTCTACAGGTAT.....................................................................211869.008696043405113158
....................................................................CTACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................241555.00555431211716664
.....................................................................TACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................231507.00507415179144210
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCT...................................................................221276.00276249354105
.....................................................................TACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................221114.0011410501161
.....................................................................TACCCTGTAGTTCCGGGCTTT............................................................................................................................................21196.00968202291
....................................................................CTACCCTGTAGTTCCGGGCTT.............................................................................................................................................21188.00886908542
....................................................................CTACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................23179.00797000072
......................................................................ACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................22176.00767400020
............................................................................................................................................GAAGCTCGTCTCTACAGGTA......................................................................20172.007235065521
....................................................................CTACCCTGTAGTTCCGGGCTTT............................................................................................................................................22171.00716003341
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT..................................................................24150.0050222121310
.............................................................................................................................................AAGCTCGTCTCTACAGGTATC....................................................................21139.00393601020
.............................................................................................................................................AAGCTCGTCTCTACAGGTAT.....................................................................20134.00343400000
............................................................................................................................................GAAGCTCGTCTCTACAGGT.......................................................................19132.003215022013
.....................................................................TACCCTGTAGTTCCGGGCTT.............................................................................................................................................20124.00242400000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................25120.0020630155
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC..................................................................24120.00201100162
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCA...................................................................23117.00171001015
.....................................................................TACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................24115.0015900024
......................................................................ACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................21115.00151500000
..............................................................................................................................................AGCTCGTCTCTACAGGTATCT...................................................................21110.0010900010
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTAT.....................................................................2219.009410004
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCC...................................................................2218.008000080
............................................................................................................................................GAAGCTCGTCTCTACAGGTATT....................................................................2217.007100024
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCG...................................................................2316.006100050
............................................................................................................................................GAAGCTCGTCTCTACAGG........................................................................1816.006401010
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT...................................................................2415.005400001
............................................................................................................................................GAAGCTCGTCTCTACAGGTATA....................................................................2215.005101030
....................................................................CTACCCTGTAGTTCCGGGCT..............................................................................................................................................2015.005301100
............................................................................................................................................GAAGCTCGTCTCTACAGGTAA.....................................................................2115.005000203
......................................................................ACCCTGTAGTTCCGGGCTTT............................................................................................................................................2015.005500000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAC.....................................................................2114.004000130
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG..................................................................2414.004400000
.......................................................................CCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................2114.004400000
....................................................................CTACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................2414.004202000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGC.........................................................................................................................................2514.004000040
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTT.................................................................2513.003100110
............................................................................................................................................GAAGCTCGTCTCTACAGGTATAC...................................................................2313.003000030
......................................................................ACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................2313.003200010
.............................................................................................................................................AAGCTCGTCTCTACAGGTA......................................................................1913.003300000
....................................................................CTACCCTGTAGTTCCGGGC...............................................................................................................................................1913.003100020
............................................................................................................................................GAAGCTCGTCTCTACAGGTATTC...................................................................2312.002000020
................................................................................................................................................CTCGTCTCTACAGGTATC....................................................................1812.002200000
.....................................................................TACCCTGTAGTTCCGGGC...............................................................................................................................................1812.002200000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2412.002200000
................................................................................................................................................CTCGTCTCTACAGGTATCT...................................................................1912.002200000
....................................................................CTACCCTGTAGTTCCGGGCTTGG...........................................................................................................................................2312.002200000
.....................................................................TACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................2312.002200000
.....................................................................TACCCTGTAGTTCCGGGCTTTG...........................................................................................................................................2212.002100010
...............................................................................................................................................GCTCGTCTCTACAGGTATCT...................................................................2012.002100010
.....................................................................TACCCTGTAGTTCCGGGCTTTTGC.........................................................................................................................................2412.002000020
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA..................................................................2412.002200000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCTT..................................................................2311.001100000
...............................................................................................................................................GCTCGTCTCTACAGGTATC....................................................................1911.001100000
..........................................................................................................................................CAGAAGCTCGTCTCTACAGGTA......................................................................2211.001000001
........................................................................................................TA-CGA-----------ATGCCATTGTCAATTATCA..........................................................................................2411.001000010
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCTG..................................................................2311.001100000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATGCG..................................................................2411.001100000
.............................................................................................................................................AAGCTCGTCTCTACAGGT.......................................................................1811.001100000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTGC.................................................................2511.001100000
.....................................................................TACCCTGTAGTTCCGGGCT..............................................................................................................................................1911.001100000
...............................................................................................................................................GCTCGTCTCTACAGGTATCC...................................................................2011.001000010
........................................................................CCTGTAGTTCCGGGCTTTT...........................................................................................................................................1911.001100000
.......................................................................CCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................2211.001100000
..............................................................................................................................................AGCTCGTCTCTACAGGTATC....................................................................2011.001100000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATG....................................................................2211.001100000
droVir3
---ATAAG--TGGTCTCGTACTGG--GTGAAGTGGGGGTCAGTGAATAACAGA-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATAGTGCATT-CAA-----------ATGCCATTCTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCAA-A----------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCT...................................................................23110605.001060590611202251388010001000092433522050836829304358280002025250200121002400001133151316178470183823113110023729191067176561629363751
............................................................................................................................................GAAGCTCGTCTCTACAGGTATC....................................................................2213852.003852101412034091060000000000106484083582405613300000000200000000011000021225163263837138480001100360133500200
.....................................................................TACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................2311147.001147151733110000000000010660531227753012913900010001000001200000000000000001001039100000009021101001
............................................................................................................................................GAAGCTCGTCTCTACAGGTAT.....................................................................211681.006814621181000000000005534263140260418500000110200000000000000000000000000013433000000022000000010
....................................................................CTACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................241618.0061838205700000000006941205128330437500000100100000000000000000001010000485100300007000100011
.....................................................................TACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................221265.0026582511210000000000108123840168000000001000001000000000000011000001022000000040000000001
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCC...................................................................231203.002033478085000000000000000001300000000000000001000000000000000000000100000000000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................231188.001885267810000000000695432056000000000000000000000000000000101014001000000029000001000
......................................................................ACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................221177.001771087100200000001075141250151400100000000000000000000000000000000010000000002000000000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCT...................................................................221176.00176111320000000000092352008600000000000000000000000000000000000015100000000000000000
.....................................................................TACCCTGTAGTTCCGGGCTTT............................................................................................................................................211156.0015681281000000000009135320102000000000000000000000000000001000013022000000011000000000
....................................................................CTACCCTGTAGTTCCGGGCTTT............................................................................................................................................221143.00143985900000000000674251075000000000000000000000000000101040205010000010013000200000
....................................................................CTACCCTGTAGTTCCGGGCTT.............................................................................................................................................211123.0012314244310000000000741130023000000000000000000000000000000200010033000000011000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT..................................................................24189.0089742020000000000861526081000000000000000000000000000000000000102200000005000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTA......................................................................20174.00741313260000000000030203001000000000000000000000000000000000000105300000004000000000
.....................................................................TACCCTGTAGTTCCGGGCTT.............................................................................................................................................20149.004967180000000000000102202000000000000000000000000000000000001003000000007000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGT.......................................................................19148.0048613101000000000010012001400000000000000000000000000000000000002100000006000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................23146.00460020000000000031487509600000000000000000000000000000000000000000000001000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCG...................................................................23137.0037121800000000000001001000100000000000000000000000000000000000101000000002000000000
....................................................................CTACCCTGTAGTTCCGGGCT..............................................................................................................................................20135.003542150000000000000010000000000000000000000000000000000000001100000000002000000000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATC....................................................................21127.002700250000000000000020000000000000000000000000000000000000000000000000000000000000
......................................................................ACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................21126.002610180000000000011200000000000000000000000000000000000000000000000000003000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCA...................................................................23123.002310100000000000031001100300000000000000000000000000000000000001100000001000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................24119.00190310000000000012000103200000000000000000000000000000000000101100000003000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG..................................................................24113.00135350000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................25112.00122011000000000010020000000000000000000000000000000010000000100000000021000000000
.............................................................................................................................................AAGCTCGTCTCTACAGGTAT.....................................................................20112.00120080000000000020100000000000000000000000000000000000000000001000000000000000000
......................................................................ACCCTGTAGTTCCGGGCTTT............................................................................................................................................20111.00110080000000000000000000000000000000000000000000000000000000100000000002000000000
............................................................................................................................................GAAGCTCGTCTCTACAGG........................................................................18110.00105040000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................................................................................................................AGCTCGTCTCTACAGGTATCT...................................................................2119.0090180000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................CCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................2119.0090080000000000010000000000000000000000000000000000000000000000000000000000000000
......................................................................ACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................2319.0090020000000000011120000100000000000000000000000000000000000010000000000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATT....................................................................2218.0080230000000000020010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTAT.....................................................................2218.0080020000000000000021000100000000000000000000000000001000000001000000000000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................2418.0080010000000000000021201100000000000000000000000000000000000000000000000000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2415.0051000000000000000000000100000000000000000000000000000010000000000000002000000000
................................................................................................................................................CTCGTCTCTACAGGTATCT...................................................................1914.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CTACCCTGTAGTTCCGGGCC..............................................................................................................................................2014.0040400000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC..................................................................2414.0040010000000000000002000000000000000000000000000000000000000001000000000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAA.....................................................................2113.0031010000000000001000000000000000000000000000000000000000000000000000000000000000
.....................................................................TACCCTGTAGTTCCGGGC...............................................................................................................................................1813.0030200000000000001000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCC...................................................................2213.0030102000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGC.........................................................................................................................................2513.0030003000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TACCCTGTAGTTCCGGGCT..............................................................................................................................................1913.0030110000000000000000000000000000000000000000000000000000000000000000001000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATA....................................................................2213.0030010000000000001000000000000000000000000000000000000000000001000000000000000000
...............................................................................................................................................GCTCGTCTCTACAGGTATCT...................................................................2013.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTT.................................................................2513.0030020000000000010000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................AGCTCGTCTCTACAGGTAT.....................................................................1913.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA..................................................................2412.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2512.0021000000000000000000100000000000000000000000000000000000000000000000000000000000
.........................................................................CTGTAGTTCCGGGCTTTTG..........................................................................................................................................1912.0020010000000000010000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................GCTCGTCTCTACAGGTATC....................................................................1912.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CTACCCTGTAGTTCCGGGC...............................................................................................................................................1912.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................CCTGTAGTTCCGGGCTTTT...........................................................................................................................................1912.0022000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CTACCCTGTAGTTCCGGGCA..............................................................................................................................................2012.0021100000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TGTAGTTCCGGGCTTTTG..........................................................................................................................................1812.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTG...........................................................................................................................................2312.0020000000000000001010000000000000000000000000000000000000000000000000000000000000
....................................................................CTACCCTGTAGTTCCGGGCG..............................................................................................................................................2012.0021000000000000000000000000000000000000000000000000000000000000000000001000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAC.....................................................................2112.0021001000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGC.......................................................................1912.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TACCCTGTAGTTCCGGGCC..............................................................................................................................................1912.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTC..........................................................................................................................................2412.0020001000000000000000000000000000000000000000000000000000000001000000000000000000
....................................................................CTACCCTGTAGTTCCGGG................................................................................................................................................1812.0020000000000000010000000000000000000000000000000000000000001000000000000000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTGT..........................................................................................................................................2311.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTA..........................................................................................................................................2311.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTG...........................................................................................................................................2211.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTCC.........................................................................................................................................2411.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGG.........................................................................................................................................2411.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGA.......................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................ACCCTGTAGTTCCGGGCTT.............................................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................AGCTCGTCTCTACAGGTATC....................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TACCCTGTAGTTCCGGGCTTG............................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGAAA-......................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................CCCTGTAGTTCCGGGCTTT............................................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGT.......................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
droGri2
---CAAAGCCGGGGCTCGGAGGGGCAGCGAAGTG-----AAGTGATATTCAGA-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TTAGTGCATT-CAA-----------ATGCCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACGAATAAAAATCAAGTGCAAAC-------------AAAT------AASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCT...................................................................231605.0060556540
............................................................................................................................................GAAGCTCGTCTCTACAGGTATC....................................................................22169.0069627
....................................................................CTACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................24159.0059572
.....................................................................TACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................23158.0058553
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCT...................................................................22146.0046460
....................................................................CTACCCTGTAGTTCCGGGCTT.............................................................................................................................................21121.0021201
............................................................................................................................................GAAGCTCGTCTCTACAGGTAT.....................................................................21120.0020182
.....................................................................TACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................22116.0016160
......................................................................ACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................22113.0013130
....................................................................CTACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................23112.0012111
............................................................................................................................................GAAGCTCGTCTCTACAGGTA......................................................................2018.00880
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT..................................................................2418.00871
....................................................................CTACCCTGTAGTTCCGGGCTTT............................................................................................................................................2215.00550
....................................................................CTACCCTGTAGTTCCGGGCT..............................................................................................................................................2014.00431
.............................................................................................................................................AAGCTCGTCTCTACAGGTATC....................................................................2114.00440
............................................................................................................................................GAAGCTCGTCTCTACAGGT.......................................................................1913.00330
....................................................................CTACCCTGTAGTTCCGGGC...............................................................................................................................................1913.00330
.....................................................................TACCCTGTAGTTCCGGGCTTT............................................................................................................................................2112.00220
.....................................................................TACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................2412.00211
..............................................................................................................................................AGCTCGTCTCTACAGGTATCT...................................................................2112.00220
......................................................................ACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................2112.00220
...............................................................................................................................................GCTCGTCTCTACAGGTATCT...................................................................2011.00110
....................................................................CTACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2511.00110
.......................................................................CCCTGTAGTTCCGGGCTTTT...........................................................................................................................................2011.00110
.............................................................................................................................................AAGCTCGTCTCTACAGGTAT.....................................................................2011.00110
.......................................................................CCCTGTAGTTCCGGGCTTTTC..........................................................................................................................................2111.00110
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTAT.....................................................................2211.00101
............................................................................................................................................GAAGCTCGTCTCTACAGG........................................................................1811.00110
......................................................................ACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................2311.00110
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCA...................................................................2311.00101
.............................................................................................................................................AAGCTCGTCTCTACAGGTA......................................................................1911.00110
.......................................................................CCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................2111.00110
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT...................................................................2411.00110
................................................................................................................................................CTCGTCTCTACAGGTATCT...................................................................1911.00110
..........................................................................TGTAGTTCCGGGCTTTTG..........................................................................................................................................1811.00110
....................................................................CTACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................2511.00101
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCG...................................................................2211.00110
......................................................................ACCCTGTAGTTCCGGGCTT.............................................................................................................................................1911.00110
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG..................................................................2411.00110
.................GGAGGGGCAGCGAAGTC-----T..............................................................................................................................................................................................1850.20110
droWil2
---AAA--------------------------------------------AGAAAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTTTAAAGTGCATT----------TCCG-ATGCCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACAATGAC-----------GAC----------------AT------AASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCT...................................................................23113100.00131005337304251817992404
............................................................................................................................................GAAGCTCGTCTCTACAGGTATC....................................................................2216121.00612154743675459167
.....................................................................TACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................231705.0070524738564819
............................................................................................................................................GAAGCTCGTCTCTACAGGTAT.....................................................................211313.003138714919751
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCT...................................................................221286.00286316443778
....................................................................CTACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................241271.00271231822559
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCC...................................................................231222.002222133024
.....................................................................TACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................221143.001437663103
.....................................................................TACCCTGTAGTTCCGGGCTTT............................................................................................................................................21192.00925734100
....................................................................CTACCCTGTAGTTCCGGGCTT.............................................................................................................................................21183.00834238201
......................................................................ACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................22175.0075567030
....................................................................CTACCCTGTAGTTCCGGGCTTT............................................................................................................................................22161.00612237002
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT..................................................................24153.005322142411
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCG...................................................................23148.0048471000
............................................................................................................................................GAAGCTCGTCTCTACAGGTA......................................................................20142.0042319200
............................................................................................................................................GAAGCTCGTCTCTACAGGT.......................................................................19132.0032244103
....................................................................CTACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................23131.00311311052
.....................................................................TACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................24130.0030197121
.....................................................................TACCCTGTAGTTCCGGGCTT.............................................................................................................................................20122.0022184000
....................................................................CTACCCTGTAGTTCCGGGCT..............................................................................................................................................20121.0021173001
.............................................................................................................................................AAGCTCGTCTCTACAGGTATC....................................................................21115.0015014001
..............................................................................................................................................AGCTCGTCTCTACAGGTATCT...................................................................21113.0013012001
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG..................................................................24112.0012111000
......................................................................ACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................21111.001119010
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCA...................................................................23111.001144012
......................................................................ACCCTGTAGTTCCGGGCTTT............................................................................................................................................20110.001028000
............................................................................................................................................GAAGCTCGTCTCTACAGG........................................................................18110.001028000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTAT.....................................................................2219.00902034
................................................................................................................................................CTCGTCTCTACAGGTATCT...................................................................1918.00815002
....................................................................CTACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................2518.00842020
.....................................................................TACCCTGTAGTTCCGGGCTTTTGG.........................................................................................................................................2417.00761000
.....................................................................TACCCTGTAGTTCCGGGCT..............................................................................................................................................1916.00660000
.......................................................................CCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................2116.00606000
.............................................................................................................................................AAGCTCGTCTCTACAGGTAT.....................................................................2015.00505000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2515.00532000
............................................................................................TTTTAAAGTGCATT----------TCCG-ATG..........................................................................................................2114.00400004
....................................................................CTACCCTGTAGTTCCGGGCC..............................................................................................................................................2014.00440000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATT....................................................................2214.00440000
......................................................................ACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................2313.00312000
...............................................................................................................................................GCTCGTCTCTACAGGTATCT...................................................................2013.00302001
............................................................................................................................................GAAGCTCGTCTCTACAGGC.......................................................................1913.00330000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2413.00321000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCTT..................................................................2312.00202000
.....................................................................TACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................2312.00211000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATA....................................................................2212.00210001
............................................................................................................................................GAAGCTCGTCTCTACAGGTAC.....................................................................2112.00220000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAA.....................................................................2112.00202000
.....................................................................TACCCTGTAGTTCCGGGCTTTC...........................................................................................................................................2212.00211000
..............................................................................................................................................AGCTCGTCTCTACAGGTATC....................................................................2012.00211000
....................................................................CTACCCTGTAGTTCCGGGCTTC............................................................................................................................................2211.00110000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGAA........................................................................................................................................2511.00110000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT...................................................................2411.00100100
.........................................................................................................................................TCAGAAGCTCGTCTCTACAGGA.......................................................................2211.00101000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGG.........................................................................................................................................2511.00110000
.....................................................................TACCCTGTAGTTCCGGGCTC.............................................................................................................................................2011.00110000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCTG..................................................................2311.00101000
........................................................................CCTGTAGTTCCGGGCTTTTG..........................................................................................................................................2011.00101000
......................................................................ACCCTGTAGTTCCGGGCTT.............................................................................................................................................1911.00101000
.............................................................................................................................................AAGCTCGTCTCTACAGGTA......................................................................1911.00101000
.........................................................................CTGTAGTTCCGGGCTTTTG..........................................................................................................................................1911.00101000
............................................................................................................................................GAAGCTCGTCTCTACAGGG.......................................................................1911.00110000
.....................................................................TACCCTGTAGTTCCGGGCTTC............................................................................................................................................2111.00110000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAG.....................................................................2111.00110000
......................................................................ACCCTGTAGTTCCGGGCTTTTGC.........................................................................................................................................2311.00110000
....................................................................CTACCCTGTAGTTCCGGGCG..............................................................................................................................................2011.00110000
.......................................................................................................................................TATCAGAAGCTCGTCTCTACAGGTAT.....................................................................2611.00100001
.....................................................................TACCCTGTAGTTCCGGGCTTTTGC.........................................................................................................................................2411.00110000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA..................................................................2411.00100010
....................................................................CTACCCTGTAGTTCCGGG................................................................................................................................................1811.00110000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC..................................................................2411.00100010
....................................................................CTACCCTGTAGTTCCGGGCTTTTA..........................................................................................................................................2411.00110000
............................................................................................................................................GAAGCTCGTCTCTACAGGTTC.....................................................................2111.00101000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTATC....................................................................2311.00110000
.........................................................................CTGTAGTTCCGGGCTTTT...........................................................................................................................................1811.00110000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTA......................................................................2111.00100010
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTG.................................................................2511.00101000
.................................................................................................................................................TCGTCTCTACAGGTATCT...................................................................1811.00101000
dp5
---A---------------------------------------------------ACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGCC-CGATGTATTTTCGAGTGTTTGTGTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCTG-AAAGTG-----A----AAAATGGACGTGAAAAT------GTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCT...................................................................23110270.0010270118701713136043143645080032
............................................................................................................................................GAAGCTCGTCTCTACAGGTATC....................................................................2212063.00206312811272683621151850130
.....................................................................TACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................231831.008314706111123621058
....................................................................CTACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................241775.007750661133252990134
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCC...................................................................231522.0052212342175020000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAT.....................................................................211510.00510143331831533004
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCT...................................................................221509.005090433198141817000
....................................................................CTACCCTGTAGTTCCGGGCTT.............................................................................................................................................211304.00304927515085001
.....................................................................TACCCTGTAGTTCCGGGCTTT............................................................................................................................................211146.00146413810012000
.....................................................................TACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................221132.00132282732507024
....................................................................CTACCCTGTAGTTCCGGGCTTT............................................................................................................................................221130.00130212021021002
....................................................................CTACCCTGTAGTTCCGGGCT..............................................................................................................................................20183.008386702013002
....................................................................CTACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................23181.008126333042004
......................................................................ACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................22176.007607010010004
.....................................................................TACCCTGTAGTTCCGGGCTT.............................................................................................................................................20170.007006601030000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATC....................................................................21160.006005701002000
............................................................................................................................................GAAGCTCGTCTCTACAGGTA......................................................................20154.005414700014001
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT..................................................................24146.004613331152000
..............................................................................................................................................AGCTCGTCTCTACAGGTATCT...................................................................21136.003603501000000
.............................................................................................................................................AAGCTCGTCTCTACAGGTAT.....................................................................20124.002402400000000
............................................................................................................................................GAAGCTCGTCTCTACAGGT.......................................................................19124.002401821012000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCA...................................................................23114.00140920030000
....................................................................CTACCCTGTAGTTCCGGGC...............................................................................................................................................19112.00121901010000
......................................................................ACCCTGTAGTTCCGGGCTTT............................................................................................................................................20111.001101100000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................24111.00111510021001
....................................................................CTACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................25111.00110620000003
......................................................................ACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................2119.0090900000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2418.0081600000001
.....................................................................TACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................2317.0070310000030
.....................................................................TACCCTGTAGTTCCGGGCT..............................................................................................................................................1916.0060600000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAC.....................................................................2116.0060015000000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCC...................................................................2216.0060042000000
............................................................................................................................................GAAGCTCGTCTCTACAGG........................................................................1815.0050410000000
...............................................................................................................................................GCTCGTCTCTACAGGTATCT...................................................................2015.0050410000000
..............................................................................................................................................AGCTCGTCTCTACAGGTATC....................................................................2015.0050500000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG..................................................................2414.0040400000000
......................................................................ACCCTGTAGTTCCGGGCTT.............................................................................................................................................1914.0040400000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCG...................................................................2314.0040021001000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC..................................................................2413.0030201000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATA....................................................................2213.0030012000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAA.....................................................................2113.0030300000000
.......................................................................CCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................2113.0030300000000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTAT.....................................................................2213.0030100002000
.........................................................................CTGTAGTTCCGGGCTTTTG..........................................................................................................................................1913.0030200000001
.....................................................................TACCCTGTAGTTCCGGGCTTTTGG.........................................................................................................................................2413.0030300000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTT......................................................................2013.0030300000000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTATC....................................................................2313.0030300000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................2412.0020100100000
....................................................................CTACCCTGTAGTTCCGGGCTTC............................................................................................................................................2212.0020011000000
............................................................................................................................................GAAGCTCGTCTCTACAG.........................................................................1712.0020000000002
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCTT..................................................................2312.0020200000000
......................................................................ACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................2312.0020110000000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT...................................................................2412.0020100100000
....................................................................CTACCCTGTAGTTCCGGG................................................................................................................................................1812.0021001000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTT.................................................................2512.0020010001000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA..................................................................2412.0020101000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATT....................................................................2212.0020200000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATAC...................................................................2312.0020011000000
..........................................................................TGTAGTTCCGGGCTTTTG..........................................................................................................................................1811.0010100000000
.................................................................................................................................................TCGTCTCTACAGGTATCT...................................................................1811.0010100000000
.....................................................................TACCCTGTAGTTCCGGGCTTG............................................................................................................................................2111.0010100000000
....................................................................CTACCCTGTAGTTCCGGGCC..............................................................................................................................................2011.0011000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGTTT-......................................................................................................................................2611.0010000000001
....................................................................CTACCCTGTAGTTCCGGGCTTTA...........................................................................................................................................2311.0010100000000
....................................................................CTACCCTGTAGTTCCGGGA...............................................................................................................................................1911.0010100000000
......................................................................ACCCTGTAGTTCCGGGCT..............................................................................................................................................1811.0010100000000
............................................................................................................................................GAAGCTCGTCTCTACAGGA.......................................................................1911.0010000010000
...................................................................CCTACCCTGTAGTTCCGGGCTT.............................................................................................................................................2211.0010100000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGC.........................................................................................................................................2511.0010001000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGTT........................................................................................................................................2511.0010001000000
...............................................................................................................................................GCTCGTCTCTACAGGTAT.....................................................................1811.0010100000000
.....................................................................TACCCTGTAGTTCCGGGCTTTC...........................................................................................................................................2211.0010001000000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCTG..................................................................2311.0010100000000
...................................................................CCTACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................2511.0010100000000
......................................................................ACCCTGTAGTTCCGGGCTTTTGG.........................................................................................................................................2311.0010100000000
........................................................................CCTGTAGTTCCGGGCTTTTG..........................................................................................................................................2011.0010100000000
.........................................................................................................................................TCAGAAGCTCGTCTCTACAGGTATCT...................................................................2611.0010000001000
....................................................................CTACCCTGTAGTTCCGGGCTTTG...........................................................................................................................................2311.0010100000000
..................................................................................................................................................CGTCTCTACAGGTATCT...................................................................1711.0010000000001
................................................................................................................................................CTCGTCTCTACAGGTATC....................................................................1811.0010100000000
....................................................................CTACCCTGTAGTTCCGGGTA..............................................................................................................................................2011.0010100000000
................................................................................................................................................CTCGTCTCTACAGGTATCT...................................................................1911.0010100000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTG.................................................................2511.0010100000000
droPer2
---A---------------------------------------------------ACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGCT-CGATGTATTTTCGAGTGTTTGTGTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCTG-AAAGTG-----A----AAAATGGACGCGAAAAT------GTSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCT...................................................................2313263.003263560115275239398839
............................................................................................................................................GAAGCTCGTCTCTACAGGTATC....................................................................221682.0068228318154171101
............................................................................................................................................GAAGCTCGTCTCTACAGGTAT.....................................................................211185.001851800133556
.....................................................................TACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................231159.001592478127218
....................................................................CTACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................241146.00146882515315
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCT...................................................................221108.00108065910195
....................................................................CTACCCTGTAGTTCCGGGCTT.............................................................................................................................................21143.0043101304142
....................................................................CTACCCTGTAGTTCCGGGCT..............................................................................................................................................20136.00361690281
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCC...................................................................23123.00231901120
....................................................................CTACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................23123.00236110141
....................................................................CTACCCTGTAGTTCCGGGCTTT............................................................................................................................................22116.00160121111
.....................................................................TACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................22115.0015572100
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCA...................................................................23113.0013091300
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT..................................................................24112.0012230232
.....................................................................TACCCTGTAGTTCCGGGCTTT............................................................................................................................................21112.0012150330
............................................................................................................................................GAAGCTCGTCTCTACAGGTA......................................................................20111.0011030035
.............................................................................................................................................AAGCTCGTCTCTACAGGTATC....................................................................21110.00100100000
......................................................................ACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................22110.0010090010
....................................................................CTACCCTGTAGTTCCGGGC...............................................................................................................................................1918.008440000
.....................................................................TACCCTGTAGTTCCGGGCTT.............................................................................................................................................2018.008240011
............................................................................................................................................GAAGCTCGTCTCTACAGGT.......................................................................1918.008510011
..............................................................................................................................................AGCTCGTCTCTACAGGTATCT...................................................................2117.007070000
....................................................................CTACCCTGTAGTTCCGGGCC..............................................................................................................................................2017.007700000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCG...................................................................2316.006600000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................2416.006500100
.............................................................................................................................................AAGCTCGTCTCTACAGGTAT.....................................................................2015.005050000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATT....................................................................2214.004010012
............................................................................................................................................GAAGCTCGTCTCTACAGG........................................................................1814.004310000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTAT.....................................................................2213.003000201
....................................................................CTACCCTGTAGTTCCGGGCTTTTGG.........................................................................................................................................2513.003210000
................................................................................................................................................CTCGTCTCTACAGGTATCT...................................................................1912.002020000
......................................................................ACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................2112.002020000
.....................................................................TACCCTGTAGTTCCGGGCT..............................................................................................................................................1912.002020000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA..................................................................2412.002020000
....................................................................CTACCCTGTAGTTCCGGG................................................................................................................................................1812.002200000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................2512.002100010
......................................................................ACCCTGTAGTTCCGGGCTTT............................................................................................................................................2011.001010000
.....................................................................TACCCTGTAGTTCCGGGC...............................................................................................................................................1811.001010000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAG.....................................................................2111.001000010
............................................................................................TTT-ATATTGCGCT-CGATGTATTTTCG..............................................................................................................2611.001000001
............................................................................................................................................GAAGCTCGTCTCTACAGGTC......................................................................2011.001000010
..............................................................................................................................................AGCTCGTCTCTACAGGTA......................................................................1811.001010000
.....................................................................TACCCTGTAGTTCCGGGCTTTTA..........................................................................................................................................2311.001000100
...............................................................................................................................................GCTCGTCTCTACAGGTATC....................................................................1911.001010000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2511.001000100
.....................................................................TACCCTGTAGTTCCGGGCTTTG...........................................................................................................................................2211.001010000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC..................................................................2411.001000100
............................................................................................................................................GAAGCTCGTCTCTACAGGTATG....................................................................2211.001010000
.......................................................................CCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................2111.001010000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCTT..................................................................2311.001010000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAA.....................................................................2111.001000001
droAna3
---AAT--------------------------------------------TGA-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGTT-CGATGCATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC----------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCT...................................................................2317558.0075584651436242044721771
............................................................................................................................................GAAGCTCGTCTCTACAGGTATC....................................................................2212046.0020461359133259127366
............................................................................................................................................GAAGCTCGTCTCTACAGGTAT.....................................................................2111367.0013679929139147179
....................................................................CTACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................241380.0038028890402221
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCT...................................................................221372.00372278804379
.....................................................................TACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................231314.00314265612589
............................................................................................................................................GAAGCTCGTCTCTACAGGTA......................................................................201142.00142941062417
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCC...................................................................231140.0014031350101
.....................................................................TACCCTGTAGTTCCGGGCTTT............................................................................................................................................21189.008970301123
....................................................................CTACCCTGTAGTTCCGGGCTT.............................................................................................................................................21181.0081533010105
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT..................................................................24179.007934201834
.............................................................................................................................................AAGCTCGTCTCTACAGGTATC....................................................................21166.00666300102
.....................................................................TACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................22150.00503710831
.............................................................................................................................................AAGCTCGTCTCTACAGGTAT.....................................................................20148.00484800000
....................................................................CTACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................23146.00462950552
............................................................................................................................................GAAGCTCGTCTCTACAGGT.......................................................................19141.00412310269
....................................................................CTACCCTGTAGTTCCGGGCT..............................................................................................................................................20139.003917207211
....................................................................CTACCCTGTAGTTCCGGGCTTT............................................................................................................................................22136.00362500542
......................................................................ACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................22134.00343400000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCA...................................................................23125.00251710025
.....................................................................TACCCTGTAGTTCCGGGCTT.............................................................................................................................................20123.00231600520
..............................................................................................................................................AGCTCGTCTCTACAGGTATCT...................................................................21114.00141400000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATT....................................................................22113.0013900112
.....................................................................TACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................24113.0013520231
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTAT.....................................................................22110.0010300232
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCG...................................................................2319.009210015
......................................................................ACCCTGTAGTTCCGGGCTTT............................................................................................................................................2018.008800000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAG.....................................................................2117.007000133
....................................................................CTACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................2516.006000240
.............................................................................................................................................AAGCTCGTCTCTACAGGTA......................................................................1916.006300003
...............................................................................................................................................GCTCGTCTCTACAGGTATCT...................................................................2016.006510000
.......................................................................CCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................2115.005500000
............................................................................................................................................GAAGCTCGTCTCTACAGG........................................................................1815.005400001
......................................................................ACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................2114.004400000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA..................................................................2414.004300001
..............................................................................................................................................AGCTCGTCTCTACAGGTAT.....................................................................1914.004400000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAA.....................................................................2113.003100002
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTT.................................................................2513.003300000
.....................................................................TACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................2313.003300000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGG.........................................................................................................................................2513.003300000
....................................................................CTACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................2413.003200010
............................................................................................................................................GAAGCTCGTCTCTACAGGTAC.....................................................................2113.003010020
...............................................................................................................................................GCTCGTCTCTACAGGTAT.....................................................................1813.003300000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2413.003200001
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG..................................................................2413.003300000
....................................................................CTACCCTGTAGTTCCGGGCTA.............................................................................................................................................2113.003100101
.............................................................................................................................................AAGCTCGTCTCTACAGGT.......................................................................1812.002200000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCG...................................................................2212.002200000
..............................................................................................................................................AGCTCGTCTCTACAGGTATC....................................................................2012.002200000
.....................................................................TACCCTGTAGTTCCGGGCTTTG...........................................................................................................................................2212.002200000
.........................................................................CTGTAGTTCCGGGCTTTTG..........................................................................................................................................1912.002200000
....................................................................CTACCCTGTAGTTCCGGGCTTG............................................................................................................................................2212.002200000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATA....................................................................2212.002100010
......................................................................ACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................2312.002200000
......................................................................ACCCTGTAGTTCCGGGCTT.............................................................................................................................................1912.002200000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCTT..................................................................2312.002100001
.....................................................................TACCCTGTAGTTCCGGGCT..............................................................................................................................................1912.002200000
.................................................................................................TATTGCGTT-CGATGCATTGTCG..............................................................................................................2211.001000010
............................................................................................................................................GAAGCTCGTCTCTACAGGTATG....................................................................2211.001100000
................................................................................................................................................CTCGTCTCTACAGGTATCT...................................................................1911.001100000
....................................................................CTACCCTGTAGTTCCGGGCTTTG...........................................................................................................................................2311.001000100
.................................................................................................................................................TCGTCTCTACAGGTATCT...................................................................1811.001100000
.........................................................................................................................................TCAGAAGCTCGTCTCTACAGGTA......................................................................2311.001000010
............................................................................................................................................GAAGCTCGTCTCTACAGGGC......................................................................2011.001000100
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCC...................................................................2211.001010000
.......................................................................CCCTGTAGTTCCGGGCTTT............................................................................................................................................1911.001100000
.....................................................................TACCCTGTAGTTCCGGGCTTG............................................................................................................................................2111.001000001
.....................................................................TACCCTGTAGTTCCGGGCTTTA...........................................................................................................................................2211.001000100
droBip1
---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TTATTGCGTT-C------------------------GATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACATTT-CAAGTG-----AGAAATAATT-GATGTG-------------SizeHit CountTotal NormTotal
No Reads
droKik1
CTCAAT--------------------------------------------AGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATGGCGTC-CGA-----TGTCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTATG-AAAGTG-----A----AAA---------------------TSizeHit CountTotal NormTotal
No Reads
droFic1
---AAT--------------------------------------------TGC-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATGCCGCGTT-CGACGCACTGTCGCACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TAATGGCGTT-CGATGCATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAGCGCTC-AAAGTGATCTA--AA--------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAACGGCGTT-CGGTGCATTGCCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAGC----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TAACTGCGTT-CGATGCA-TGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-CGATGCATTGTCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATGGCGTT-CGATGCATTGTCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC----------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-CGGCACATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACCTCAATA-TGAGTGAACTG--AA--------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCT...................................................................23138041.0038041000061310056516422406006800001000191763067912010000101034000102000035929422400000000000000000002091851117511650014612064928083498651283173166246928852340163753304012683336661631154715268224414828411446393493637735600000000000230000000700000000000000011321358010193167277217679129362211531000002052001200000100000000000000000034191867817117000132002211700182264700129812701351003215716500221019701002860002220005050000230638924046238347396151120020452814837851213517830900042620002647466131306634634426001240
............................................................................................................................................GAAGCTCGTCTCTACAGGTATC....................................................................2214041.004041000011610023140100200000000002247512300000000001010000000001131000000000000000000020022607160012511413885378303265683964642520901121102561211061151901806727026833340000000000000000000000000000000000008390058007158255267013212000002600000000000000000000000000000000030001050000100051202138300034170150006918000202800000500200001000000004458468601444190201006206592000031160100001900036936511664135000110
............................................................................................................................................GAAGCTCGTCTCTACAGGTAT.....................................................................2112649.002649000064000011100000200000000021284310000000000000001000000063403400000000000000000010012907600041153751411323122211712201110150377522010019302062802533731000000000000000000002000000000000000951600600067501342113019680000021300000000000000000000000000000000010010100020000320102110008110400012700000140000080000100010000000261324660014304000024015290000043000002200036126365211921100000
.....................................................................TACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................2311174.00117400000100010000000000001000002020200000000000001000000000002000000000000000000000002301860001312318992510126205010021163603127605070811711312000000000020000000002000000000000000516706910182102023833914000008400000000000000000000000000001000100000000000100122509000002960800037500052104001102711000000000010004812711884010000130212000006000000000001741921020300
....................................................................CTACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................2411070.0010700000000001010000000000100000413614100000000000200000000000101000000000000000000000130141000002330514736011042300000017350511110102020213400000000000010000000100000000000000044580407015161584134621320000026000000000000000000000000000021000000000000000002444010000019605000314800061850000011001000000000000041037058740100009061100000950000001000413541988000120
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCT...................................................................221485.00485000010000000000000000000000000147000000000000000000000000403000000000000000000000100500001040013071114900010001111050130401070010000000000000010000000000000000000000010110120012100200140200000002700000000000000000000000000000000000000000000000210410000990600011200000600000200013000100000001117152814510000003096000005100000030001186011105000000
.....................................................................TACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................221404.00404000010000000000000000000000000450000000000001000000000000000000000000000000000002000000020571551029001225400000108130150810304121123800000000000000000000000000000000000015400540036040110121000008000000000000000000000000000000000001101000000000001100001120300000000010230000000000000000000000101000110000001303200000600000010001121000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCATC.................................................................251277.00277000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021166000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................231242.0024200000000000000000000000000000113100000000000000000000000000000000000000000000000000000000010024180000350001000100007063030212031240000000000000000000000000000000000002228017204311075600000020000000000000000000000000000000000000000000000010000000032010000120001011000001000000000000000010030030000000801200000600000000001010200000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTA......................................................................201185.0018500000000000000000000000000014152122000000000000000000000523000000000000000000000110000001021023140010120002000000000011000100032130000000000000000000000000000000000004803310315440820000060000000000000000000000000000000000000000000610000000000014000000000000020000000000000000000000412300010000001023000000000000000081650002000000
............................................................................................................................................GAAGCTCGTCTCTACAGGT.......................................................................191179.0017900000000000000000000000000007300000000000000000000000000003000000000000000000000000000000010001021100121000000000002000000000011810000000000000000000000000000000000000320210203083012800000400000000000000000000000000000000000000000000000000010000130000010000000200000100000000000000001025002001000050420000030000000000122220232000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCA...................................................................231172.00172000022000002100000000000000000000000000000000000000000000000000000000000000000001000000070030262150001106000040210008001010201010210000000000000000000000000000000000002707007201020400000018000000000000000000000000000000000000000000020000003000001000000010000000000000000000000000000012020010000000104200000500000010001241112000000
.....................................................................TACCCTGTAGTTCCGGGCTTT............................................................................................................................................211108.0010800000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023035010000418000000102010803000010103012000000000000000000000000000000000000460800110102020000001000000000000000000000000000000000000000000000000002100001100000000000003000000000000000000000000010000010000000100000000000000000200000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT..................................................................241102.0010200001000010000000000000000000000000000000000000000000000000000000000000000000000000000000021001203001112100000200010000000010013011000000000000000000000000000000000000110000310003050000006000000000000000000000000000000001000000000031000100310001000000000000000000000000000000000000012010120000000100000000700000020001031210000100
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCC...................................................................231101.0010100001000011000000000000000000000000000000000000000000000000000000000000000000000200000001300301102001180000000100001041000013020200000000000000000000000000000000000003400000103030400000013000000000000000000000000000000000000000000001000000100000000000000000002000001000000000000000000111010000000201200000000000020000120100000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCG...................................................................23184.008400000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000010000000000000000060000000000101000000000000000000000000000000000000042020003010140270000002000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000200000000000202100000000000000000010002000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC..................................................................24177.0077000000000000000000000000000000000000000000000000000000001822210000000000000000000000000000000000000300001000000100000001100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023000000100000000000000000000000000000000000000000000000000000000000000000000000000000010100000000
....................................................................CTACCCTGTAGTTCCGGGCTTT............................................................................................................................................22158.0058000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001300000000000000000002000010001001000000000000000000000000000000000000260710200004040000000000000000000000000000000000000000000000000000000000000003002000000000006000001000000000000000010010000010000000100000400000000000000100000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................24147.0047000011000000000000000000000000000000000000000000000000001010000000000000000000000000000000010002300000000000000000000000000001000000000000000000000000000000000000000240100010002020000000000000000000000000000000000000000000100000000000000000002000000001000104000001000000000000000002000031000000001300000200000000000000200000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATT....................................................................22141.0041000011000000000000000000000000000000000000000000000000000000000000000000000000002000000000050010200014600000101000100001000001010000000000000000000000000000000000000100000000001030000002000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000010000000000000000000000000000000000100010000000
......................................................................ACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................22140.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010100000200030000000000000001001000000000000000000000000000000000000000000000760200100100060000003000000000000000000000000000000000000000000000001000000000000000000000001000000000000000000000000010000000000000000000000000000000000001000000
....................................................................CTACCCTGTAGTTCCGGGCTT.............................................................................................................................................21137.0037000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000011000000000000000100000000000000110000000000000000000000000000000000000480100010001000000001000000000000000000000000000000000000000000000000000000001002000001000102000000000000000000000000000010000000200000000000000000001100100100000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTAT.....................................................................22137.0037000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100000000000010000500000000001000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000002320210000000100200000100000000000520013000000
............................................................................................................................................GAAGCTCGTCTCTACAGG........................................................................18137.0037000000000000000040000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000010900000000000000000000000000000000000000000011101050110000002000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000010000000000000000100000000000000000110001000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................23129.0029000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000400000100000000000000000302000000001014000000000000000000000000000000000000020000000001000000000000000000000000000000000000000000000000000000001100000002000000200000200000000000000000000000000000000000000100000000000000000000000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTC.................................................................25126.00260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATC....................................................................21121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000001000000000000000000000000000000000000000220000010000000000002000000000000000000000000000000000000000000000000000100002101000000000000000000000000000000000020010000000000000000000000000000000010200000000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT...................................................................24119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110201300100000100000010000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000020100000000000000000100000000000100000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATA....................................................................22119.0019000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200006000000000000000000000100001000000000000000000000000000000000000200100010100000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.....................................................................TACCCTGTAGTTCCGGGCTT.............................................................................................................................................20119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011100000000000000000000000000000001000000000000000000000000000000000000120200000003010000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000100000100000000001100000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA..................................................................24117.0017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000092000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................25115.0015000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000003000000000000000000000000000000000000000000000000000000100000000000000001000000000010000000000000000000001000000000000000000200000000000200001000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................24114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000001000000000000000000000000000000000000000140000000000000000000000000000000000000000000000000000000000000000003000000000000000020000000000000000000000000000000000000000000001100000000000000000000000000000
.............................................................................................................................................AAGCTCGTCTCTACAGGTAT.....................................................................20112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101020000003000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000010000000000000000000000000000000300000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2419.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000010000001000000000000000000001000000000000000000000000000000000000000000000100000000000000010000000
..............................................................................................................................................AGCTCGTCTCTACAGGTATCT...................................................................2118.008000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000001000000000000000000000000000000000000000000000000000000010000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTCACAGG.............................................................2918.008000000000000000000000000000000000000000000000000000000003410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAC.....................................................................2118.008000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000100000000000000000000000000000
......................................................................ACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................2118.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000110100000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTCT.................................................................2517.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAA.....................................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000000000000000000000000000000000000000010000000000000000000000000300000000000
droSim2
---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-CGGCGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACCTCAATGAAAAGTGAACTG--AAGTAACT------GAAAACGTGA----SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCT...................................................................23111421.00114215395210216593450192446830645135004001
............................................................................................................................................GAAGCTCGTCTCTACAGGTATC....................................................................22110888.001088874582299728371232401890901002
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC..................................................................2411076.001076010047102600010100000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCC...................................................................231553.005533481129110000000100000
.....................................................................TACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................231543.005431407814074665009220900000
............................................................................................................................................GAAGCTCGTCTCTACAGGTA......................................................................201397.003976626411328500110000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................241374.003743845886945901232901500003
............................................................................................................................................GAAGCTCGTCTCTACAGGTAT.....................................................................211342.0034215991217446001170401000
............................................................................................................................................GAAGCTCGTCTCTACAGG........................................................................181245.0024520330421400010000000
.....................................................................TACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................221244.0024414345121122700100111000
....................................................................CTACCCTGTAGTTCCGGGCTT.............................................................................................................................................211227.00227132721410700010000000
....................................................................CTACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................231206.00206965234801100120100100
....................................................................CTACCCTGTAGTTCCGGGCTTT............................................................................................................................................221163.00163745814411200000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCG...................................................................231142.0014275392800000000000000
.....................................................................TACCCTGTAGTTCCGGGCTTT............................................................................................................................................211134.001347136882900000000000
....................................................................CTACCCTGTAGTTCCGGGCT..............................................................................................................................................201126.0012677294101500000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGT.......................................................................191121.0012160214123300000000000
.....................................................................TACCCTGTAGTTCCGGGC...............................................................................................................................................18156.0056201025100000000000
.....................................................................TACCCTGTAGTTCCGGGCTT.............................................................................................................................................20149.00492861311000000000000
.....................................................................TACCCTGTAGTTCCGGGCT..............................................................................................................................................19146.0046550003600000000000
....................................................................CTACCCTGTAGTTCCGGGC...............................................................................................................................................19134.0034321002800000000000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCT...................................................................22134.0034911150200000600000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT..................................................................24133.0033198510000000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................24125.0025183200100000000001
....................................................................CTACCCTGTAGTTCCGGG................................................................................................................................................18122.0022001021900000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................25121.0021451000000010100000
....................................................................CTACCCTGTAGTTCCGGGCC..............................................................................................................................................20120.0020145100000000000000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCTC..................................................................23113.0013000001300000000000
......................................................................ACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................22111.001120160100100000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCA...................................................................2319.00931220000100000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2519.00911700000000000000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATC....................................................................2118.00841020100000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGG.......................................................................1917.00752000000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAC.....................................................................2116.00651000000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGC.......................................................................1916.00624000000000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................2315.00541000000000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGG.........................................................................................................................................2415.00514000000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATT....................................................................2215.00540010000000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2415.00532000000000000000
................................................................................................................................................CTCGTCTCTACAGGTATC....................................................................1814.00440000000000000000
......................................................................ACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................2114.00401020100000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................2414.00421100000000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGG.........................................................................................................................................2513.00310200000000000000
.............................................................................................................................................AAGCTCGTCTCTACAGGTA......................................................................1913.00300001200000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG..................................................................2413.00311010000000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGC.........................................................................................................................................2513.00301200000000000000
.....................................................................TACCCTGTAGTTCCGGGCC..............................................................................................................................................1913.00330000000000000000
............................................................................................................GGCGCATTGTCGGATTGC........................................................................................................1813.00310200000000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTA...........................................................................................................................................2313.00321000000000000000
...............................................................................................................GCATTGTCGGATTGCTGGCTCC.................................................................................................2212.00200200000000000000
.....................................................................TACCCTGTAGTTCCGGGCG..............................................................................................................................................1912.00211000000000000000
......................................................................ACCCTGTAGTTCCGGGCT..............................................................................................................................................1812.00200001100000000000
...............................................................................................................................................GCTCGTCTCTACAGGTATC....................................................................1912.00220000000000000000
.....................................................................TACCCTGTAGTTCCGGGCTTC............................................................................................................................................2112.00220000000000000000
......................................................................ACCCTGTAGTTCCGGGCTTT............................................................................................................................................2012.00200110000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAG.....................................................................2112.00202000000000000000
.........................................................................CTGTAGTTCCGGGCTTTTG..........................................................................................................................................1912.00200010000010000000
....................................................................CTACCCTGTAGTTCCGGGCG..............................................................................................................................................2012.00211000000000000000
................................................................................................................................................CTCGTCTCTACAGGTATCT...................................................................1912.00210100000000000000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTATC....................................................................2312.00202000000000000000
....................................................................CTACCCTGTAGTTCCGGGCTTC............................................................................................................................................2212.00220000000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTCAC................................................................2611.00100000100000000000
....................................................................CTACCCTGTAGTTCCGGGCTC.............................................................................................................................................2111.00110000000000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGC.........................................................................................................................................2411.00110000000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTCA.................................................................2511.00100000100000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGA.......................................................................1911.00110000000000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTC...........................................................................................................................................2211.00101000000000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTG...........................................................................................................................................2211.00101000000000000000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTA......................................................................2111.00100000100000000000
.........................................................................................................................................TCAGAAGCTCGTCTCTACAGG........................................................................2111.00110000000000000000
.............................................................................................................................................AAGCTCGTCTCTACAGGTAT.....................................................................2011.00100000100000000000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGT.......................................................................2011.00101000000000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGAA........................................................................................................................................2611.00100010000000000000
............................................................................................................................................GAAGCTCGTCTCTACAGT........................................................................1811.00110000000000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTA..........................................................................................................................................2311.00100100000000000000
.......................................................................CCCTGTAGTTCCGGGCTTTTGC.........................................................................................................................................2211.00101000000000000000
...........................................................................................................................................AGAAGCTCGTCTCTACAG.........................................................................1811.00100000100000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTAA..........................................................................................................................................2311.00110000000000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTC...........................................................................................................................................2311.00110000000000000000
droSec2
---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTTTCGGCGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACCTCAATGAAAAGTGAACTG--AAGTAACT------GAAAACGTGA--GTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCT...................................................................2313781.0037812143762347529
............................................................................................................................................GAAGCTCGTCTCTACAGGTATC....................................................................221491.00491321812168
....................................................................CTACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................241435.004352032817430
.....................................................................TACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................231319.00319173179930
............................................................................................................................................GAAGCTCGTCTCTACAGGTAT.....................................................................211214.0021413457122
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCT...................................................................221162.0016211413728
.....................................................................TACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................22151.00512313510
............................................................................................................................................GAAGCTCGTCTCTACAGGTA......................................................................20150.00502910110
....................................................................CTACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................23139.003919596
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT..................................................................24130.003021306
....................................................................CTACCCTGTAGTTCCGGGCTT.............................................................................................................................................21124.002415702
............................................................................................................................................GAAGCTCGTCTCTACAGGT.......................................................................19123.002313604
......................................................................ACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................22122.002221010
.....................................................................TACCCTGTAGTTCCGGGCTTT............................................................................................................................................21121.002115312
.............................................................................................................................................AAGCTCGTCTCTACAGGTATC....................................................................21119.001916102
....................................................................CTACCCTGTAGTTCCGGGCT..............................................................................................................................................20116.00169412
....................................................................CTACCCTGTAGTTCCGGGCTTT............................................................................................................................................22116.001615100
.....................................................................TACCCTGTAGTTCCGGGCTT.............................................................................................................................................2018.0087100
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCA...................................................................2318.0084112
.....................................................................TACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................2417.0070061
............................................................................................................................................GAAGCTCGTCTCTACAGG........................................................................1817.0077000
..............................................................................................................................................AGCTCGTCTCTACAGGTATCT...................................................................2116.0065001
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTAT.....................................................................2216.0061500
....................................................................CTACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................2516.0061131
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCC...................................................................2315.0054001
.............................................................................................................................................AAGCTCGTCTCTACAGGTAT.....................................................................2014.0044000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTA......................................................................2114.0040301
.....................................................................TACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................2313.0032100
............................................................................................................................................GAAGCTCGTCTCTACAGGTAA.....................................................................2113.0031200
...............................................................................................................................................GCTCGTCTCTACAGGTATCT...................................................................2013.0033000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAG.....................................................................2112.0022000
.........................................................................................................................................TCAGAAGCTCGTCTCTACAGGT.......................................................................2212.0021100
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCTT..................................................................2312.0022000
......................................................................ACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................2112.0022000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2512.0020020
......................................................................ACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................2312.0020020
....................................................................CTACCCTGTAGTTCCGGGCTTTTGC.........................................................................................................................................2512.0020110
..............................................................................................................................................AGCTCGTCTCTACAGGTATC....................................................................2012.0022000
.....................................................................TACCCTGTAGTTCCGGGCT..............................................................................................................................................1912.0021010
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA..................................................................2412.0022000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCG...................................................................2311.0011000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCAA..................................................................2411.0010100
.................................................................................................................................................TCGTCTCTACAGGTATCT...................................................................1811.0011000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGT.......................................................................2011.0010100
................................................................................................................CATTGTCGGATTGCTGGC....................................................................................................1811.0010010
......................................................................ACCCTGTAGTTCCGGGCTTT............................................................................................................................................2011.0011000
............................................................................................................................................GAAGCTCGTCTCTACAGGTT......................................................................2011.0011000
....................................................................CTACCCTGTAGTTCCGGGCTTTA...........................................................................................................................................2311.0010100
.......................................................................CCCTGTAGTTCCGGGCTT.............................................................................................................................................1811.0011000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATAA...................................................................2311.0010001
............................................................................................................................................GAAGCTCGTCTCTACAGTAT......................................................................2021.0022000
....................................................................CTACCCTGTAGTTCCGGGC...............................................................................................................................................1911.0011000
.....................................................................TACCCTGTAGTTCCGGGCTTTTA..........................................................................................................................................2311.0010001
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTCT.................................................................2511.0010100
.........................................................................................................................................TCAGAAGCTCGTCTCTACAGGTAT.....................................................................2411.0010100
......................................................................ACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................2211.0011000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATT....................................................................2211.0010100
................................................................................................................................................CTCGTCTCTACAGGTATCT...................................................................1911.0011000
..........................................................................................................................................CAGAAGCTCGTCTCTACAGGTA......................................................................2211.0010100
.......................................................................CCCTGTAGTTCCGGGCTTTT...........................................................................................................................................2011.0011000
....................................................................CTACCCTGTAGTTCCGGGCTTG............................................................................................................................................2211.0010010
.....................................................................TACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2411.0011000
....................................................................CTACCCTGTAGTTCCGGGCTA.............................................................................................................................................2111.0011000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTT.................................................................2511.0011000
......................................................................ACCCTGTAGTTCCGGGCTT.............................................................................................................................................1911.0011000
..............................................................................................................................................AGCTCGTCTCTACAGGTAT.....................................................................1911.0011000
.......................................................................CCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................2111.0011000
............................................................................................................................................GAAGCTCGTCTCTACAGGC.......................................................................1911.0010100
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG..................................................................2411.0011000
....................................................................CTACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................2411.0010100
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT...................................................................2411.0011000
...................................................................CCTACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................2511.0010010
....................................................................CTACCCTGTAGTTCCGGGCTTA............................................................................................................................................2211.0011000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCC...................................................................2211.0010001
.....................................................................TACCCTGTAGTTCCGGGCTTTTGG.........................................................................................................................................2411.0011000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTTA................................................................2611.0011000
droYak3
---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-CGACGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAATAAACCTCAA--------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCT...................................................................2316948.0069481935267014011421142164690010
............................................................................................................................................GAAGCTCGTCTCTACAGGTATC....................................................................2212748.0027481900302449101226430060
....................................................................CTACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................241515.005159311109281822112050
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCC...................................................................231513.00513144136800000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................231359.00359362125611151822070
............................................................................................................................................GAAGCTCGTCTCTACAGGTAT.....................................................................211211.002113213140915180020
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCT...................................................................221200.0020031698411140000
....................................................................CTACCCTGTAGTTCCGGGCTT.............................................................................................................................................21176.00761443903430000
....................................................................CTACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................23172.007210321904320020
.....................................................................TACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................22166.00661146600200010
....................................................................CTACCCTGTAGTTCCGGGCTTT............................................................................................................................................22153.00537291401200000
.....................................................................TACCCTGTAGTTCCGGGCTTT............................................................................................................................................21146.00461430000110000
............................................................................................................................................GAAGCTCGTCTCTACAGGTA......................................................................20146.00461818001450000
......................................................................ACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................22138.0038036001100000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCG...................................................................23129.0029252200000000
....................................................................CTACCCTGTAGTTCCGGGCT..............................................................................................................................................20128.0028164602000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT..................................................................24128.0028108700210000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATC....................................................................21124.0024021101000010
............................................................................................................................................GAAGCTCGTCTCTACAGGT.......................................................................19120.0020145000100000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................24114.001443700000000
......................................................................ACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................21112.0012011100000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCA...................................................................23112.001228001100000
.............................................................................................................................................AAGCTCGTCTCTACAGGTAT.....................................................................20111.0011010000100000
.....................................................................TACCCTGTAGTTCCGGGCTT.............................................................................................................................................20110.001017002000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................2519.00900800010000
..............................................................................................................................................AGCTCGTCTCTACAGGTATCT...................................................................2116.00606000000000
....................................................................CTACCCTGTAGTTCCGGGCC..............................................................................................................................................2015.00540100000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGC.........................................................................................................................................2515.00500500000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAC.....................................................................2114.00440000000000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTAT.....................................................................2214.00401010020000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATT....................................................................2214.00421100000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATA....................................................................2214.00401300000000
....................................................................CTACCCTGTAGTTCCGGGC...............................................................................................................................................1913.00303000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2413.00302100000000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT...................................................................2413.00302001000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC..................................................................2413.00300200010000
..............................................................................................................................................AGCTCGTCTCTACAGGTATC....................................................................2012.00202000000000
................................................................................................................................................CTCGTCTCTACAGGTATCT...................................................................1912.00202000000000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCC...................................................................2212.00200200000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................2312.00200002000000
...................................................................CCTACCCTGTAGTTCCGGGCTT.............................................................................................................................................2212.00201100000000
............................................................................................................................................GAAGCTCGTCTCTACAGG........................................................................1812.00210000100000
.....................................................................TACCCTGTAGTTCCGGGC...............................................................................................................................................1812.00201001000000
....................................................................CTACCCTGTAGTTCCGGGCTC.............................................................................................................................................2112.00200200000000
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTATC....................................................................2312.00220000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................2412.00201000100000
............................................................................................TTT-AAATGGCGTT-CGACGCATTGTCG..............................................................................................................2612.00202000000000
.......................................................................CCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................2112.00202000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2512.00200101000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTTA.........................................................................................................................................2511.00100000100000
.............................................................................................TT-AAATGGCGTT-CGACGCATTGTCGGA............................................................................................................2711.00101000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATGC...................................................................2311.00101000000000
......................................................................ACCCTGTAGTTCCGGGCT..............................................................................................................................................1811.00101000000000
.....................................................................TACCCTGTAGTTCCGGGCTTGGC..........................................................................................................................................2311.00101000000000
....................................................................CTACCCTGTAGTTCCGGGCTTTG...........................................................................................................................................2311.00100000100000
.................................................................................................................................................TCGTCTCTACAGGTATCT...................................................................1811.00101000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTGG................................................................2611.00101000000000
......................................................................ACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................2211.00101000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGC.......................................................................1911.00100100000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGTT........................................................................................................................................2611.00101000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTC..........................................................................................................................................2311.00100100000000
....................................................................CTACCCTGTAGTTCCGGGCTTTTGG.........................................................................................................................................2511.00101000000000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCG...................................................................2211.00101000000000
......................................................................ACCCTGTAGTTCCGGGCTTT............................................................................................................................................2011.00101000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGG.........................................................................................................................................2411.00110000000000
..............................................................................................................................................AGCTCGTCTCTACAGGTATCTA..................................................................2211.00100000010000
.....................................................................TACCCTGTAGTTCCGGGCT..............................................................................................................................................1911.00110000000000
.............................................................................................................................................AAGCTCGTCTCTACAGGC.......................................................................1811.00101000000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATG....................................................................2211.00100001000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATTG...................................................................2311.00101000000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGC.........................................................................................................................................2411.00100100000000
droEre2
---AAT--------------------------------------------TGT-AACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-CGACGC-TTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAATAAACCTCAAG-CCAAG-------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCT...................................................................2319851.0098514532606180215260717110
............................................................................................................................................GAAGCTCGTCTCTACAGGTATC....................................................................221949.009494241261452451350
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCT...................................................................221474.00474286478441250
.....................................................................TACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................231366.00366297617712270
....................................................................CTACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................241337.00337255910725310
............................................................................................................................................GAAGCTCGTCTCTACAGGTAT.....................................................................211272.0027213317287420
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCC...................................................................231184.001844152002260
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCA...................................................................23149.00491501010230
.....................................................................TACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................22143.004337110220
....................................................................CTACCCTGTAGTTCCGGGCTTTT...........................................................................................................................................23137.003722450240
............................................................................................................................................GAAGCTCGTCTCTACAGGTA......................................................................20135.0035140201720
......................................................................ACCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................22135.003532000120
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT..................................................................24126.002612011480
.............................................................................................................................................AAGCTCGTCTCTACAGGTATC....................................................................21123.002319000130
............................................................................................................................................GAAGCTCGTCTCTACAGGT.......................................................................19121.002160001140
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTAT.....................................................................22119.001901201330
....................................................................CTACCCTGTAGTTCCGGGCTTT............................................................................................................................................22118.001814000130
.....................................................................TACCCTGTAGTTCCGGGCTTT............................................................................................................................................21116.001611020120
....................................................................CTACCCTGTAGTTCCGGGCTT.............................................................................................................................................21115.001511010210
..............................................................................................................................................AGCTCGTCTCTACAGGTATCT...................................................................21115.001514000010
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCG...................................................................23114.00142010470
.............................................................................................................................................AAGCTCGTCTCTACAGGTAT.....................................................................2019.0097010010
.....................................................................TACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................2316.0063003000
.....................................................................TACCCTGTAGTTCCGGGCTT.............................................................................................................................................2015.0055000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGT.........................................................................................................................................2415.0052000210
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT...................................................................2415.0053010100
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC..................................................................2414.0040030010
....................................................................CTACCCTGTAGTTCCGGGCTTTTT..........................................................................................................................................2414.0043001000
.......................................................................CCCTGTAGTTCCGGGCTTTTG..........................................................................................................................................2114.0044000000
............................................................................................................................................GAAGCTCGTCTCTACAGG........................................................................1814.0042000110
................................................................................................................................................CTCGTCTCTACAGGTATCT...................................................................1913.0032000100
............................................................................................................................................GAAGCTCGTCTCTACAGGTAA.....................................................................2113.0031000110
.........................................................................................................................................TCAGAAGCTCGTCTCTACAGGTAT.....................................................................2413.0031000020
.....................................................................TACCCTGTAGTTCCGGGCTTTTC..........................................................................................................................................2313.0031000020
............................................................................................................................................GAAGCTCGTCTCTACAGGTATT....................................................................2212.0021000100
............................................................................................TTT-AAATGGCGTT-CGACGC-TTGTCGG.............................................................................................................2612.0021000100
....................................................................CTACCCTGTAGTTCCGGGC...............................................................................................................................................1912.0022000000
.....................................................................TACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2412.0021000010
............................................................................................................................................GAAGCTCGTCTCTACAGGTATA....................................................................2212.0020000020
.............................................................................................................................................AAGCTCGTCTCTACAGGTA......................................................................1912.0022000000
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCC...................................................................2211.0010100000
..............................................................................................................CGC-TTGTCGGATTGCTGGC....................................................................................................1911.0010000010
.............................................................................................................................................AAGCTCGTCTCTACAGGTATCG...................................................................2211.0010001000
......................................................................ACCCTGTAGTTCCGGGCTTTTA..........................................................................................................................................2211.0011000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG..................................................................2411.0011000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTATAA...................................................................2311.0010000010
............................................................................................TTT-AAATGGCGTT-CGACGC-TTGTCGGATT..........................................................................................................2911.0010000100
....................................................................CTACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2511.0011000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTAAA....................................................................2211.0010000100
...........................................................................................................................................AGAAGCTCGTCTCTACAGGTA......................................................................2111.0010010000
......................................................................ACCCTGTAGTTCCGGGCTTTTGA.........................................................................................................................................2311.0011000000
....................................................................CTACCCTGTAGTTCCGGGCTTA............................................................................................................................................2211.0011000000
............................................................................................................................................GAAGCTCGTCTCTACAGGTTCT....................................................................2211.0010000010
....................................................................CTACCCTGTAGTTCCGGGCTTTTGAA........................................................................................................................................2611.0011000000
................................................................................................................................................CTCGTCTCTACAGGTATC....................................................................1811.0011000000

Generated: 10/20/2015 at 07:41 PM