ID:

dmo_328

 Coordinate:

scaffold_6680:23179010-23179086 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

5pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.8 -28.6 -28.6

Flybase annnotation

utr5 [utr5_plus_8998]

No Repeatable elements found

Sense Strand Reads

GCTGACCTAGTCGCCAGAAATAAAAGGTTGAAAGCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAATATTATCATAAGTTCTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAACACCTCAGTTCAATTAATTTAATTTTAAAATAAATTCAA

***********************************...(((.(((((((((.(((((((((..(((.((((.((....((((((...))))))........)).)))).)))..)))))))))))))))))).)))...************************************** 		Read size # Mismatch Hit Count Total Norm Total V056

head

 V049

head

 V110

male body		 M046

female body

 M060

embryo

 V041

embryo
..................................................AGTTGGGATTTTTTAGATCAGC......................................................................................................... 22 0 1 2092.00 2092 1282 769 28 11 2 0
..................................................AGTTGGGATTTTTTAGATCAG.......................................................................................................... 21 0 1 1484.00 1484 867 597 18 2 0 0
....................................................TTGGGATTTTTTAGATCAGCAG....................................................................................................... 22 0 1 561.00 561 336 209 9 6 0 1
..................................................AGTTGGGATTTTTTAGATCA........................................................................................................... 20 0 1 401.00 401 242 153 3 3 0 0
....................................................TTGGGATTTTTTAGATCAGC......................................................................................................... 20 0 1 373.00 373 230 141 1 1 0 0
..................................................AGTTGGGATTTTTTAGATCAGCA........................................................................................................ 23 0 1 178.00 178 129 46 2 1 0 0
..................................................AGTTGGGATTTTTTAGATCAGCAG....................................................................................................... 24 0 1 152.00 152 82 67 1 1 1 0
..................................................AGTTGGGATTTTTTAGATCAGCT........................................................................................................ 23 1 1 147.00 147 90 56 1 0 0 0
.....................................................TGGGATTTTTTAGATCAGCAGT...................................................................................................... 22 0 1 140.00 140 86 49 5 0 0 0
....................................................TTGGGATTTTTTAGATCAGCA........................................................................................................ 21 0 1 110.00 110 73 36 1 0 0 0
......................................................................................................TACTGGCCTACTAAGTCTCAAT..................................................... 22 0 1 78.00 78 38 28 0 12 0 0
....................................................TTGGGATTTTTTAGATCAGCAGT...................................................................................................... 23 0 1 67.00 67 37 27 3 0 0 0
.....................................................TGGGATTTTTTAGATCAGCAG....................................................................................................... 21 0 1 62.00 62 36 25 1 0 0 0
...................................................GTTGGGATTTTTTAGATCAGCAG....................................................................................................... 23 0 1 47.00 47 22 24 1 0 0 0
...................................................GTTGGGATTTTTTAGATCAGC......................................................................................................... 21 0 1 43.00 43 23 17 1 2 0 0
..................................................AGTTGGGATTTTTTAGATCATC......................................................................................................... 22 1 1 37.00 37 15 22 0 0 0 0
......................................................................................................TACTGGCCTACTAAGTCTCA....................................................... 20 0 1 36.00 36 16 19 0 1 0 0
...................................................GTTGGGATTTTTTAGATCAGCA........................................................................................................ 22 0 1 29.00 29 18 11 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCAGT......................................................................................................... 22 1 1 26.00 26 16 10 0 0 0 0
..................................................AGTTGGGATTTTTTATATCAG.......................................................................................................... 21 1 1 23.00 23 8 15 0 0 0 0
..................................................AGTTGGGATTTTTTATATCAGC......................................................................................................... 22 1 1 22.00 22 10 12 0 0 0 0
..................................................AGGTGGGATTTTTTAGATCAGC......................................................................................................... 22 1 1 21.00 21 14 7 0 0 0 0
..................................................AGTTGGGATTTTTTAGATC............................................................................................................ 19 0 1 20.00 20 15 5 0 0 0 0
....................................................TTGGGATTTTTTAGATCAG.......................................................................................................... 19 0 1 20.00 20 14 6 0 0 0 0
......................................................................................................TACTGGCCTACTAAGTCTCAA...................................................... 21 0 1 20.00 20 9 9 0 2 0 0
.......................................................................................................ACTGGCCTACTAAGTCTCAATAT................................................... 23 0 1 20.00 20 11 6 0 3 0 0
.......................................................................................................ACTGGCCTACTAAGTCTCAATA.................................................... 22 0 1 18.00 18 7 6 0 5 0 0
...................................................GTTGGGATTTTTTAGATCAG.......................................................................................................... 20 0 1 16.00 16 8 8 0 0 0 0
..................................................AGTTGGGATTTTTTAGAT............................................................................................................. 18 0 1 15.00 15 10 5 0 0 0 0
..................................................AGGTGGGATTTTTTAGATCAG.......................................................................................................... 21 1 1 14.00 14 6 8 0 0 0 0
..................................................AGATGGGATTTTTTAGATCAGC......................................................................................................... 22 1 1 13.00 13 8 5 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCCG.......................................................................................................... 21 1 1 12.00 12 1 11 0 0 0 0
..................................................AGTTGGGGTTTTTTAGATCAGC......................................................................................................... 22 1 1 11.00 11 6 5 0 0 0 0
..................................................AGGTGGGATTTTTTAGATCATC......................................................................................................... 22 2 1 10.00 10 6 4 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCAT.......................................................................................................... 21 1 1 10.00 10 3 7 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCAGCAT....................................................................................................... 24 1 1 10.00 10 4 6 0 0 0 0
.......................................................................................................ACTGGCCTACTAAGTCTCAAT..................................................... 21 0 1 10.00 10 4 5 0 1 0 0
....................................................TTGGGATTTTTTAGATCAGCAT....................................................................................................... 22 1 1 9.00 9 4 5 0 0 0 0
..................................................AGTTGGGATTCTTTAGATCAGC......................................................................................................... 22 1 1 9.00 9 5 4 0 0 0 0
.......................................................................................................ACTGGCCTACTAAGTCTCAATT.................................................... 22 1 1 8.00 8 4 4 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCCGC......................................................................................................... 22 1 1 8.00 8 0 8 0 0 0 0
....................................................TTGGGATTTTTTAGATCAGCAGA...................................................................................................... 23 1 1 8.00 8 4 4 0 0 0 0
..................................................AGTTGGGATTTTTTAGCTCAG.......................................................................................................... 21 1 1 8.00 8 2 6 0 0 0 0
..................................................AGTTGGGATTTTTTAGATT............................................................................................................ 19 1 1 7.00 7 2 5 0 0 0 0
..................................................AGGTGGGATTTTTTAGATCA........................................................................................................... 20 1 1 7.00 7 1 6 0 0 0 0
..................................................AGTTGGGATTTTTTAGATAAGC......................................................................................................... 22 1 1 7.00 7 4 3 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCAGCTT....................................................................................................... 24 2 1 6.00 6 4 2 0 0 0 0
..................................................AGGTGGGATTTTTTAGATCAGCT........................................................................................................ 23 2 1 6.00 6 4 2 0 0 0 0
......................................................................................................TACTGGCCTACTAAGTCTCCAT..................................................... 22 1 1 6.00 6 0 6 0 0 0 0
..................................................GGTTGGGATTTTTTAGATCAGC......................................................................................................... 22 1 1 5.00 5 2 3 0 0 0 0
....................................................TTGGGATTTTTTAGATCATCAG....................................................................................................... 22 1 1 5.00 5 1 4 0 0 0 0
..................................................AGTTAGGATTTTTTAGATCAGC......................................................................................................... 22 1 1 5.00 5 1 4 0 0 0 0
..................................................AGTTGGGGTTTTTTAGATCAG.......................................................................................................... 21 1 1 5.00 5 2 3 0 0 0 0
....................................................TTGGGATTTTTTAGATCATC......................................................................................................... 20 1 1 5.00 5 3 2 0 0 0 0
..................................................AGTTGGGATTTTTTAGCTCAGC......................................................................................................... 22 1 1 5.00 5 1 4 0 0 0 0
..................................................AGTTGGGATTTTTTACATCAG.......................................................................................................... 21 1 1 5.00 5 4 1 0 0 0 0
..................................................AGTTGGGCTTTTTTAGATCAG.......................................................................................................... 21 1 1 5.00 5 4 1 0 0 0 0
..................................................AGTTGGGCTTTTTTAGATCAGC......................................................................................................... 22 1 1 5.00 5 1 4 0 0 0 0
..................................................AGTTGGGATTTTTTAGGTCAGC......................................................................................................... 22 1 1 5.00 5 3 2 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCAGA......................................................................................................... 22 1 1 5.00 5 3 2 0 0 0 0
..................................................AGTTGAGATTTTTTAGATCAGC......................................................................................................... 22 1 1 4.00 4 1 3 0 0 0 0
..................................................TGTTGGGATTTTTTAGATCAGC......................................................................................................... 22 1 1 4.00 4 2 2 0 0 0 0
..................................................AGTTGGGAGTTTTTAGATCAGC......................................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0
....................................................TTGGGCTTTTTTAGATCAGCAG....................................................................................................... 22 1 1 4.00 4 3 1 0 0 0 0
..................................................AGTTGGGATTTTTTCGATCAGC......................................................................................................... 22 1 1 4.00 4 2 2 0 0 0 0
..................................................AGATGGGATTTTTTAGATCAG.......................................................................................................... 21 1 1 4.00 4 4 0 0 0 0 0
.........................................................................................................TGGCCTACTAAGTCTCAATATT.................................................. 22 1 1 4.00 4 1 2 0 0 1 0
..................................................AGCTGGGATTTTTTAGATCAGC......................................................................................................... 22 1 1 4.00 4 3 1 0 0 0 0
..................................................AGTTGGGATTTTTTAGTTCAGC......................................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0
....................................................TTGGGATTTTTTATATCAGC......................................................................................................... 20 1 1 4.00 4 1 3 0 0 0 0
....................................................TTGGGATTTTTTAGATCAGCAGTT..................................................................................................... 24 0 1 4.00 4 3 1 0 0 0 0
.......................................................................................................ACTGGCCTACTAAGTCTCAA...................................................... 20 0 1 4.00 4 3 1 0 0 0 0
....................................................TTGGGATTTTTTAGATCA........................................................................................................... 18 0 1 4.00 4 4 0 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCTG.......................................................................................................... 21 1 1 4.00 4 3 1 0 0 0 0
..................................................AGTTGGGATTTTTTGGATCAGC......................................................................................................... 22 1 1 4.00 4 2 2 0 0 0 0
..................................................AGTTAGGATTTTTTAGATCAG.......................................................................................................... 21 1 1 4.00 4 1 3 0 0 0 0
..................................................AGTTGGGATTTTTTATATCATC......................................................................................................... 22 2 1 4.00 4 0 4 0 0 0 0
....................................................TTGGGCTTTTTTAGATCAGC......................................................................................................... 20 1 1 3.00 3 0 3 0 0 0 0
..................................................AGTTGGGATTTTTTATATCA........................................................................................................... 20 1 1 3.00 3 0 3 0 0 0 0
..................................................AGATGGGATTTTTTAGATCAGCT........................................................................................................ 23 2 1 3.00 3 2 1 0 0 0 0
...................................................GTTGGGATTTTTTAGATCA........................................................................................................... 19 0 1 3.00 3 2 1 0 0 0 0
..................................................AGTTGGGATTTTTCAGATCAGC......................................................................................................... 22 1 1 3.00 3 2 1 0 0 0 0
..................................................AGTTGGGATTTTTTAGCTCAGCA........................................................................................................ 23 1 1 3.00 3 2 1 0 0 0 0
..................................................AGGTGGGATTTTTTAGATCAGCAG....................................................................................................... 24 1 1 3.00 3 2 1 0 0 0 0
..................................................AGGTGGGATTTTTTAGATCAGCA........................................................................................................ 23 1 1 3.00 3 2 1 0 0 0 0
..................................................AGTTGGGATTTTTTATATCAGCT........................................................................................................ 23 2 1 3.00 3 2 1 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCATCT........................................................................................................ 23 2 1 3.00 3 2 1 0 0 0 0
....................................................TTGGGATTTTTTAGATCAGCCG....................................................................................................... 22 1 1 3.00 3 0 3 0 0 0 0
..................................................AGTCGGGATTTTTTAGATCAG.......................................................................................................... 21 1 1 3.00 3 2 1 0 0 0 0
..................................................GGTTGGGATTTTTTAGATCAG.......................................................................................................... 21 1 1 3.00 3 1 2 0 0 0 0
..................................................AGTTGGGATGTTTTAGATCAG.......................................................................................................... 21 1 1 3.00 3 1 2 0 0 0 0
.........................................................................................................TGGCCTACTAAGTCTCAATAT................................................... 21 0 1 3.00 3 1 2 0 0 0 0
..................................................AGATGGGATTTTTTAGATCA........................................................................................................... 20 1 1 3.00 3 3 0 0 0 0 0
..................................................AGTTGGGATCTTTTAGATCAGC......................................................................................................... 22 1 1 3.00 3 2 1 0 0 0 0
..................................................AGGTGGGATTGTTTAGATCATC......................................................................................................... 22 3 1 3.00 3 3 0 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCT........................................................................................................... 20 1 1 3.00 3 2 1 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCATCAG....................................................................................................... 24 1 1 3.00 3 0 3 0 0 0 0
..................................................AGTTGGGATTTTTTAGCTCA........................................................................................................... 20 1 1 3.00 3 2 1 0 0 0 0
......................................................................................................TGCTGGCCTACTAAGTCTCAAT..................................................... 22 1 1 3.00 3 2 0 0 1 0 0
..................................................AGTTGGGATTTTTTAGACCAGC......................................................................................................... 22 1 1 3.00 3 2 1 0 0 0 0
....................................................TTGGGATTTTTTAGATCCGCAG....................................................................................................... 22 1 1 3.00 3 0 3 0 0 0 0
....................................................TTGGGATTTTTTAGATCAGCAA....................................................................................................... 22 1 1 3.00 3 1 2 0 0 0 0
..................................................AGTTGGGATTTTTTAAATCAGC......................................................................................................... 22 1 1 3.00 3 0 3 0 0 0 0
....................................................TTGGGATTTTTTAGATAAGCAG....................................................................................................... 22 1 1 3.00 3 2 1 0 0 0 0
....................................................TTGGGATTTTTTAGAGCAGCA........................................................................................................ 21 1 1 2.00 2 0 2 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCCGCAG....................................................................................................... 24 1 1 2.00 2 0 2 0 0 0 0
.....................................................TGGGATTTTTTAGATCAGC......................................................................................................... 19 0 1 2.00 2 1 1 0 0 0 0
..................................................AGCCGGGATTTTTTAGATCAGC......................................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0
..................................................AGTTTGGATTTTTTAGATCAGC......................................................................................................... 22 1 1 2.00 2 1 1 0 0 0 0
....................................................TTGGGCTTTTTTAGATCAGCA........................................................................................................ 21 1 1 2.00 2 1 1 0 0 0 0
....................................................TTGGGATTTTTTAGATCAGCAC....................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................AGTTAGGATTTTTTAGATCAGCA........................................................................................................ 23 1 1 2.00 2 0 1 1 0 0 0
..................................................AGGTGGGTTTTTTTAGATCAG.......................................................................................................... 21 2 1 2.00 2 1 1 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCAAC......................................................................................................... 22 1 1 2.00 2 1 1 0 0 0 0
..................................................AGTTGGGGTTTTTTAGATCAGCT........................................................................................................ 23 2 1 2.00 2 1 1 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCAGCTG....................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
....................................................TTGGGATTTTTTAGATCATCA........................................................................................................ 21 1 1 2.00 2 1 1 0 0 0 0
..................................................AGGTGGGATTTTTTATATCAG.......................................................................................................... 21 2 1 2.00 2 2 0 0 0 0 0
..................................................AGTTGTGATTTTTTAGATCAG.......................................................................................................... 21 1 1 2.00 2 1 1 0 0 0 0
.....................................................TGGGATTTTTTCGATCAGCAG....................................................................................................... 21 1 1 2.00 2 0 2 0 0 0 0
..................................................AGGTGGGATTTTTTAGTTCATC......................................................................................................... 22 3 1 2.00 2 1 1 0 0 0 0
..................................................ATTTGGGATTTTTTAGATCAGC......................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCAGTTT....................................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................AGTCGGGATTTTTTAGATCAGC......................................................................................................... 22 1 1 2.00 2 0 1 1 0 0 0
....................................................TTGGGATTTTTTAGATCAGCGG....................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................AGTTGGGATTTTTTCGATCAT.......................................................................................................... 21 2 1 2.00 2 1 1 0 0 0 0
..................................................AGTTGGGATTTTCTAGATCAGC......................................................................................................... 22 1 1 2.00 2 1 1 0 0 0 0
....................................................TGGGGATTTTTTAGATCAGC......................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0
..................................................AGTTGGGATTTTTTAGCTCAGCT........................................................................................................ 23 2 1 2.00 2 1 1 0 0 0 0
..................................................AGATGGGAATATTTAGATCAGC......................................................................................................... 22 3 1 2.00 2 2 0 0 0 0 0
..................................................AGTTGGGATTTTTTCGATCAG.......................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..................................................AGATGGGATTTTTTAAATCAGC......................................................................................................... 22 2 1 2.00 2 1 1 0 0 0 0
..................................................AGTTGGGATTTTTTATATCAGCAG....................................................................................................... 24 1 1 2.00 2 1 1 0 0 0 0
..................................................AGTTGGGATTTTTTAGGTCAG.......................................................................................................... 21 1 1 2.00 2 1 1 0 0 0 0
..................................................AGTTGCGATTTTTTAGATCAG.......................................................................................................... 21 1 1 2.00 2 0 2 0 0 0 0
..................................................AGTTGGGATTTTTTGGATCAGCT........................................................................................................ 23 2 1 2.00 2 2 0 0 0 0 0
..................................................TGTTGGGATTTTTTAGATCAG.......................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..................................................AGTTGCGATTTTTTATATCAGC......................................................................................................... 22 2 1 2.00 2 0 2 0 0 0 0
....................................................TTGGGATTTTTTGGATCAGCAG....................................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0
..................................................AGTTGGGATCTTTTAGATCAG.......................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...................................................GGTGGGATTTTTTAGATCAGC......................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..................................................AGTGGGGATTTTTTAGATCA........................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0
......................................................................................................TACGGGCCTACTAAGTCTCA....................................................... 20 1 1 2.00 2 1 1 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCACC......................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...................................................GTTGGGATTTTTTAGATCATC......................................................................................................... 21 1 1 2.00 2 1 1 0 0 0 0
..................................................AGTTGGGCTTTTTTAGCTCAGC......................................................................................................... 22 2 1 2.00 2 0 2 0 0 0 0
..................................................AGTTGGGGTTTTTTAGATCGGC......................................................................................................... 22 2 1 2.00 2 1 1 0 0 0 0
..................................................AGTTGGGATTTTGTAGATCAG.......................................................................................................... 21 1 1 2.00 2 0 2 0 0 0 0
...................................................CTTGGGATTTTTTAGATCAGCAG....................................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0
....................................................TTGGGATTTTTTAGATCAGCAGC...................................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0
..................................................AGGTGGGATTTTTTAGAGCAGC......................................................................................................... 22 2 1 2.00 2 0 2 0 0 0 0
..................................................AGTTGGGATTTTTTAGATGAGC......................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................AGTTGGGATTTCTTAGATCAG.......................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
....................................................TTAGGATTTTTTAGATCAGCAG....................................................................................................... 22 1 1 2.00 2 1 1 0 0 0 0
..................................................AGTTGGGGTTTTTTAGATCATC......................................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCATCA........................................................................................................ 23 1 1 2.00 2 1 1 0 0 0 0
....................................................TTGGGATTTTTTAGATCAGCTG....................................................................................................... 22 1 1 2.00 2 1 1 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCGG.......................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..................................................AGTTGGGATTTTTTAGGTCA........................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0
..................................................AGTTGGGATGTTTTAGATCAGC......................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
....................................................TTGGGAGTTTTTAGATCAGCAG....................................................................................................... 22 1 1 2.00 2 1 1 0 0 0 0
..................................................AGTTGGGATTTTTTACATCAGC......................................................................................................... 22 1 1 2.00 2 1 1 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCAGCC........................................................................................................ 23 1 1 2.00 2 2 0 0 0 0 0
.......................................................................................................ACTGGCCTACTAAGTCTCA....................................................... 19 0 1 2.00 2 1 1 0 0 0 0
..................................................AGTTGGGATTTTTTAGGTCAGCAG....................................................................................................... 24 1 1 2.00 2 1 1 0 0 0 0
....................................................TTGGGATTTTTTACATCAGCA........................................................................................................ 21 1 1 2.00 2 2 0 0 0 0 0
....................................................TTGGGATTTTTTAGATCACCAG....................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................AGGTGGGATTTTTTATATCAGC......................................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0
..................................................AGCTGGGATTTTTTAGATCAG.......................................................................................................... 21 1 1 2.00 2 1 1 0 0 0 0
....................................................TTGGAATTTTTTAGATCAGCA........................................................................................................ 21 1 1 2.00 2 1 1 0 0 0 0
..................................................AGTTGGGATTTTTTTGATCAG.......................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..................................................AGTTGGTATTTTTTAGATCAGC......................................................................................................... 22 1 1 2.00 2 1 1 0 0 0 0
..................................................AGGTGGGAGTTTTTAGATCAGC......................................................................................................... 22 2 1 2.00 2 1 1 0 0 0 0
..................................................AGTTGGGAGTTTTTAGATCAG.......................................................................................................... 21 1 1 2.00 2 1 1 0 0 0 0
..................................................AGTTGGGATTTTTTATATCAT.......................................................................................................... 21 2 2 1.50 3 0 3 0 0 0 0
..................................................AGGTGGGATTTTTTAGATCAT.......................................................................................................... 21 2 2 1.50 3 3 0 0 0 0 0
...................................................GCTGGGATTTTTTAGATCAGTA........................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................AGATGGGACTTTCTAGATCAGC......................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGGGATTTTTTAAACCAG.......................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGATTTTTTAAATAAG.......................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................GGTTGGGATTTTTTAGATCAGCT........................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................................CTACTAAGTCTCAATA.................................................... 16 0 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGTTTTTTTTGATCAG.......................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0
......................................................................................................TACGGGCCTACTAAGTCTCT....................................................... 20 2 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGGGGTTTTTTAGATAAG.......................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0
..................................................AGGTGGGATTTTTTCGATCAGCT........................................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0
..................................................AGGTGGGTTTTTTTAGATCAGCAG....................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGAGATTTTTTAGATCA........................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..................................................AGCTGGGCTTTTTTAGATCAGC......................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
....................................................TTGGGATTTGTTAGATCAGC......................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGGGATTTTTTCGATCATCA........................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGATTTTTTAGGTCAGCT........................................................................................................ 23 2 1 1.00 1 0 1 0 0 0 0
...................................................GCTGGGCTTTTTTAGATCAGCAG....................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................AGATGGGATTTTTTAGATAA........................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGATTTCTTATACCAGC......................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0
..................................................AGTTCGGATTTTTTAGATCAG.......................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................AGATGGGATTTTTTACATCAGC......................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGGGATTTTTTGGATCAG.......................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................AGGTGGGATTTCTTCGATCAGC......................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCACCAG....................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TGTTGCGATTTTTTAGATCAG.......................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGATTTTTTAGCTCCGC......................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGAAATTTTTTAGATCAGC......................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...................................................GTGGGGATTTTTTAGATCATCCG....................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGATTTTTTCGATCA........................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................TGATGGGATCTTTTAGATCAGC......................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGATTTTTTATATCAGCAT....................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGGGAATTTTTAGATCAG.......................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................AGGTGGGATTTTTTAGCTCAGCT........................................................................................................ 23 3 1 1.00 1 0 1 0 0 0 0
......................................................................................................TAATGCCCTACTAAGTCTCTAT..................................................... 22 3 1 1.00 1 0 1 0 0 0 0
....................................................TTGGGATTTTTTAAATCAGCAG....................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGGGATTTTTTAGAA............................................................................................................. 18 1 1 1.00 1 0 1 0 0 0 0
......................................................................................................TACGGGCCTAATAAGTCTCAAT..................................................... 22 2 1 1.00 1 0 1 0 0 0 0
....................................................TTGGGGTTTTTTAGATCAGCTG....................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
....................................................TTGGGATTTTTTAGCTCAGCAGT...................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................AGTTAGAATTTTTTAGATCAGCAT....................................................................................................... 24 3 1 1.00 1 0 1 0 0 0 0
..................................................ACTTGGGATCTTTTAGATCAGC......................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
....................................................TTGGGAGTGTTTAGATCAGC......................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0
..................................................GGTTGGGATTTTTTCGATCAGCAGG...................................................................................................... 25 3 1 1.00 1 0 1 0 0 0 0
....................................................TTGTGATTTTTTAGATCAGCA........................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGGGATGTTTTCGATCAGC......................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGCGATTTTTTAGATCA........................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................AGGTGGGATTTTTTCTATCAGCA........................................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0
....................................................TTGGGCTTTTTTAGATCAG.......................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0
..................................................AAGTGGGATTTTTTAGATCAG.......................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGAGATTTTTTAGATCAGCA........................................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGGGATTTGTTAGTTCA........................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0
..................................................AGCTGGGATTTTTTAGAGCAG.......................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0
.......................................................................................................ACTGGCCTACTAAGTCTCAATTT................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...................................................GCTGGAATTTTTTAGATCACCAG....................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0
..................................................AGATGGGGTTTTTTAGATCAG.......................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................ACTGGCCTACTAAGTCTC........................................................ 18 0 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGTGATTTTTAAGATCATC......................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................AGCAGGGATTTTTTAGATAAGC......................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................AGCTGGGATTTTTCAGCTCAGC......................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0
....................................................TTGGGATTTTTTAGAGCAGC......................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0
.................................................TAGTTGGGATTTTTTAGATCAGC......................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
..................................................TGTTGTGATTTTTTAGGTCAGC......................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGTATTTTTTAGATCATCC........................................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCATA......................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................AGCTCGGATTTTTTACATCAGC......................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................TGGGATTTTTTGGATCAGAAGT...................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCGGCT........................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGATTTTTTAGAGCAG.......................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................AGGCGGGATTTTTTAGATCAGCAG....................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGGTTTTTTAGATCA........................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0
....................................................TTGGGGTTTTTTAGATCAGC......................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0
....................................................TGGGATTTTTTTAGATCAGCAG....................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0
....................................................TTGGGATTTTTTAGCTCAGCCG....................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
....................................................TTGGGATTTTTTAGATCGGCAG....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CGTTGTGATTTTTTAGATCAGC......................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
....................................................TTGGGTTTTGTTAGATCAGCAA....................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGATTTTTTAGATAAGCA........................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TGTTGGGATTTTTTACATCAGC......................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................TGTTGGGATTTTTTAGATCAGCA........................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
....................................................TTGGGATTTTTTAGATCAGCT........................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGGGATTTTTTGGATCACC......................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................ACTGGCCTACTAAGTCCCCACAT................................................... 23 3 1 1.00 1 0 1 0 0 0 0
....................................................TGGGGTTTTTTTAGATCAGCAG....................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCAGCAC....................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
...................................................GTTGGGATTTTTTAGCTCAGCA........................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
..................................................AGGGGGGATGTTTTAGATCAGC......................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCATCACC...................................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGAGATTTTTTAGATGAG.......................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................AGATGGGAGTTTTTAGATCAGC......................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................AGGTGGGATTGTTTAGGTCAGC......................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
....................................................TTGGGGTTTTTTAGATCAG.......................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGGGATTCTTTAGATCATC......................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGATGTTTTAGATAAGC......................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGATTTTTTATATCAGT......................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
......................................................................................................TACTGGCCTACTAAGTCTCAT...................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCTGC......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CGTTGGGATGTTTTAGATCAG.......................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................AGATGGGATTTTTTAGATCATCAG....................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.....................................................TGGGCTTTTTTAGATCAGCTGT...................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
....................................................TTGAGATTTTTTAGATCTGCAG....................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
....................................................TTGGGATTTTTTAGATCACTCGT...................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGGGACTTTTTAGACCAGC......................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..................................................AGGTGGGATTTTTTAGATCAGA......................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.....................................................TGGGATTTTTTGGATCAGCTG....................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
......................................................................................................TACTGGCCTACTAAGTCCCAACT.................................................... 23 3 1 1.00 1 0 0 0 0 1 0
..................................................AGTCGGGATTTTTTAGATCA........................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
....................................................TTGGGATTTTTTAGAACAGCAT....................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................TGGGATTTTTTAGATCCGCAGA...................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
.................................................TAGTTGGGATTTTTTAGATCAG.......................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGGGATTTGTTATATCAGC......................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGGTTTGTGAGATCAGC......................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGGGATTTTTTAGATCAGAT........................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGATGTTGTAGATCATC......................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................AGGTGGGATTTTTTAGAT............................................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0
...................................................GTTGGGATTTTTTAGATCAGCC........................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGGGATTTTTTATATCATCAG....................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
....................................................TTGGGATTTTTTAAATCAGC......................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGATTTTTTAAATCAGCT........................................................................................................ 23 2 1 1.00 1 0 1 0 0 0 0
..................................................AGTTGGGATTCTTTAAATCAG.......................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0
....................................................TTGGGATTTTTTAGATCAGCAGCTAA................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0
..................................................AGCTGGGATTTTTTAGATCAGCA........................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
..................................................AGGTGGGATTTTTTAGCTCAG.......................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0
..................................................TGTGGGGATTTTTTAGATCAGC......................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................AGGTGGGATTTTTTAGATCAGT......................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................AGTTGGGATTGTTTAGATCAG.......................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0

Anti-sense strand reads

CGACTGGATCAGCGGTCTTTATTTTCCAACTTTCGCACACGGGAGTAATATCAACCCTAAAAAATCTAGTCGTCAATAACTATTTATAATAGTATTCAAGAGATGACCGGATGATTCAGAGTTATATTACCCTCATTTGTGGAGTCAAGTTAATTAAATTAAAATTTTATTTAAGTT

**************************************...(((.(((((((((.(((((((((..(((.((((.((....((((((...))))))........)).)))).)))..)))))))))))))))))).)))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body
......................................................................CGTCAATAACTATTTATAATAGTATT................................................................................. 26 0 1 1.00 1 1
....................................................................................TATAATAGTATTCAAGAGATGACCGGAT................................................................. 28 0 1 1.00 1 1
.....GGATCAGCGGTCTTTATTTTCCAAC................................................................................................................................................... 25 0 1 1.00 1 1
.....GGATCAGCGGTCTTTATTTTCCAACTT................................................................................................................................................. 27 0 1 1.00 1 1
............................................................................................................................................GGAGTCAAGTTAATTAAATTAAAATTTT......... 28 0 1 1.00 1 1
................................................................................TATTTATAATAGTCGTCAA.............................................................................. 19 2 19 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6680:23178960-23179136 + dmo_328 GCTGACCTAGTCGCCAGAAA---------------TA-------------AAAGGTTGA-AA--GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAATA----TTATCATAAGTTCTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAACACCTCAGTTCA--ATTAA---------------------TT-T-----AATTTTAA-AA----------TAAATT-CAA
droVir3 scaffold_13049:17910617-17910806 + dvi-mir-193 AT-------------------CGAGG-------CATAAACTTTAAGCCTTAATGGTTGT-AA--GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATATATATATGTAT-CGTAAATCTTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAAAACCTCAGTATA--ACTTATGTGTGACTAATTT---------TT-----ATCAA----------------TAAATT-AAA
droGri2 scaffold_10030:24048-24213 - dgr_57 TTATAACT-----A------TCGAGGAAATTTACATA-------------AATGTGCTA-AA--GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAAGACCTTT-ATCGTAAATCTTCTACTGGCCTACTAAGTCCCAATATAATGGGAGTAAAACCCTCATTATA--AA--------------------------------------------TTAT-------------GTA
droWil2 scf2_1100000004540:1082179-1082319 - dwi_124 ----------------------------------------------------------------GTGTGTGCGCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACAAGTCAAAAATTTATTATCATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGACGA--AATGA---------------------AT-T-----------------TATGTG------AAA-ATA
dp5 XR_group6:2746017-2746154 - dps-mir-193 ----------------------------------------------------------------G--TGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGTATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-T------------------------------------AACAATAA-GACTATGTT-----------AA
droPer2 scaffold_9:1042483-1042620 - dpe_20 ----------------------------------------------------------------G--TGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGTATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-T------------------------------------AACAATAA-GACTATGTT-----------AA
droAna3 scaffold_13337:17070810-17070942 - dan_319 ----------------------------------------------------------------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCATATTCATAAATTCTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTATT---------------------------------------GAAAA----------------TAAAAT-ACA
droBip1 scf7180000396641:558567-558699 - ----------------------------------------------------------------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCATATTCATATATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTAGTTATGATAA-------------------------------------------------------TTA-TTG
droKik1 scf7180000302694:467038-467194 + ----------------------------------------------------------------GTGTGTGCCCTCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATTGCCATATTTTTAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGTTGCAATAATGGTGTG-CCAATTG---------T------------AAATGC----T-AAAT----A-AAA
droFic1 scf7180000453831:395569-395741 + A-----------GA-----------------------------------------TCGAAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTAT--AGCCATATTTATTATTAATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCGCAGGCCATGTCAGTAGAATG-TC--TTAAAAGTGT--TA-----AAAAA----------------TAAATTTATA
droEle1 scf7180000491255:2722769-2722903 - TT---CTT----GT-----------------------------------------TAGAAAT--ACGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATTTCGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTA--------------------------------------------------------------------
droRho1 scf7180000780059:195373-195510 - GGTTTCTT----GA-----------------------------------------TCGAAAT--CCGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACTTCGCCATATTTATAAATTTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTA--------------------------------------------------------------------
droBia1 scf7180000302377:1758709-1758867 - ----------------------------------------------------------------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATGTAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAATCCGACGTTGGCGTG------------------------AACAGTAAAAAC----TTAA-GAAAAT-GAA
droTak1 scf7180000415388:255436-255594 + CA---GGT-----------GTCAGG----------------------------GCTTAA-TC--GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTGTATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAGTTCA-T---------------------------TAATGCAATAA----------------T----A-AAA
droEug1 scf7180000409472:386357-386516 + ----------------------------------------------------------------GCGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGATAATGGTGTT-AAACTTA---------T------------AAATCT----T-AAACAAATT--AA
dm3 chr3L:21567113-21567229 + dme-mir-193 ----------------------------------------------------------------GTGTGTGCCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAG------------------------------------------------------------------------
droSim2 3l:21084425-21084541 + dsi-mir-193 ----------------------------------------------------------------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAG------------------------------------------------------------------------
droSec2 scaffold_11:1487342-1487458 + dse_189 ----------------------------------------------------------------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAG------------------------------------------------------------------------
droYak3 v2_chr3L_random_283:15562-15678 + dya_104 ----------------------------------------------------------------GTGAGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAG------------------------------------------------------------------------
droEre2 scaffold_4784:21221200-21221341 + der_131 ----------------------------------------------------------------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGT------------------------TG-----AATAT-----------T-AAAA----A-AAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GCTGACCTAGTCGCCAGAAA---------------TA-------------AAAGGTTGA-AA--GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAATA----TTATCATAAGTTCTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAACACCTCAGTTCA--ATTAA---------------------TT-T-----AATTTTAA-AA----------TAAATT-CAASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.................................................................................AGTTGGGATTTTTTAGATCAGC......................................................................................................................................................2212092.0020921107691282228
.................................................................................AGTTGGGATTTTTTAGATCAG.......................................................................................................................................................2111484.00148420597867018
...................................................................................TTGGGATTTTTTAGATCAGCAG....................................................................................................................................................221561.005616120933609
.................................................................................AGTTGGGATTTTTTAGATCA........................................................................................................................................................201401.004013015324203
...................................................................................TTGGGATTTTTTAGATCAGC......................................................................................................................................................201373.003731014123001
.................................................................................AGTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................231178.00178104612902
.................................................................................AGTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................241152.0015210678211
.................................................................................AGTTGGGATTTTTTAGATCAGCT.....................................................................................................................................................231147.0014700569001
....................................................................................TGGGATTTTTTAGATCAGCAGT...................................................................................................................................................221140.0014000498605
...................................................................................TTGGGATTTTTTAGATCAGCA.....................................................................................................................................................211110.0011000367301
.........................................................................................................................................TACTGGCCTACTAAGTCTCAAT..............................................................................................22178.0078120283800
...................................................................................TTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................23167.006700273703
....................................................................................TGGGATTTTTTAGATCAGCAG....................................................................................................................................................21162.006200253601
..................................................................................GTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................23147.004700242201
..................................................................................GTTGGGATTTTTTAGATCAGC......................................................................................................................................................21143.004320172301
.........................................................................................................................................TACTGGCCTACTAAGTCTCA................................................................................................20136.003610191600
..................................................................................GTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................22129.002900111800
.................................................................................AGTTGGGATTTTTTAGATCAGT......................................................................................................................................................22126.002600101600
.................................................................................AGTTGGGATTTTTTAGATC.........................................................................................................................................................19120.00200051500
...................................................................................TTGGGATTTTTTAGATCAG.......................................................................................................................................................19120.00200061400
.........................................................................................................................................TACTGGCCTACTAAGTCTCAA...............................................................................................21120.0020209900
..........................................................................................................................................ACTGGCCTACTAAGTCTCAATAT............................................................................................23120.00203061100
..........................................................................................................................................ACTGGCCTACTAAGTCTCAATA.............................................................................................22118.0018506700
..................................................................................GTTGGGATTTTTTAGATCAG.......................................................................................................................................................20116.0016008800
.................................................................................AGTTGGGATTTTTTAGAT..........................................................................................................................................................18115.00150051000
.................................................................................AGTTGGGATTTTTTAGATCAT.......................................................................................................................................................21110.0010007300
.................................................................................AGTTGGGATTTTTTAGATCAGCAT....................................................................................................................................................24110.0010006400
..........................................................................................................................................ACTGGCCTACTAAGTCTCAAT..............................................................................................21110.0010105400
...................................................................................TTGGGATTTTTTAGATCAGCAT....................................................................................................................................................2219.009005400
..........................................................................................................................................ACTGGCCTACTAAGTCTCAATT.............................................................................................2218.008004400
...................................................................................TTGGGATTTTTTAGATCAGCAGA...................................................................................................................................................2318.008004400
.................................................................................AGTTGGGATTTTTTAGATT.........................................................................................................................................................1917.007005200
.................................................................................AGTTGGGATTTTTTAGATCAGCTT....................................................................................................................................................2416.006002400
.................................................................................AGTTGGGATTTTTTAGATCAGA......................................................................................................................................................2215.005002300
............................................................................................................................................TGGCCTACTAAGTCTCAATATT...........................................................................................2214.004002110
...................................................................................TTGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................2414.004001300
..........................................................................................................................................ACTGGCCTACTAAGTCTCAA...............................................................................................2014.004001300
...................................................................................TTGGGATTTTTTAGATCA........................................................................................................................................................1814.004000400
..................................................................................GTTGGGATTTTTTAGATCA........................................................................................................................................................1913.003001200
............................................................................................................................................TGGCCTACTAAGTCTCAATAT............................................................................................2113.003002100
.................................................................................AGTTGGGATTTTTTAGATCT........................................................................................................................................................2013.003001200
...................................................................................TTGGGATTTTTTAGATCAGCAA....................................................................................................................................................2213.003002100
....................................................................................TGGGATTTTTTAGATCAGC......................................................................................................................................................1912.002001100
...................................................................................TTGGGATTTTTTAGATCAGCAC....................................................................................................................................................2212.002000200
.................................................................................AGTTGGGATTTTTTAGATCAGTTT....................................................................................................................................................2412.002000200
...................................................................................TTGGGATTTTTTAGATCAGCAGC...................................................................................................................................................2312.002001100
.................................................................................AGTTGGGATTTTTTAGATCAGCC.....................................................................................................................................................2312.002000200
..........................................................................................................................................ACTGGCCTACTAAGTCTCA................................................................................................1912.002001100
................................................................................................................................................CTACTAAGTCTCAATA.............................................................................................1611.001000100
.................................................................................AGTTGGGATTTTTTAGAA..........................................................................................................................................................1811.001001000
..........................................................................................................................................ACTGGCCTACTAAGTCTC.................................................................................................1811.001001000
................................................................................TAGTTGGGATTTTTTAGATCAGC......................................................................................................................................................2311.001000100
.................................................................................AGTTGGGATTTTTTAGATCATA......................................................................................................................................................2211.001000100
...................................................................................TTGGGATTTTTTAGATCAGCT.....................................................................................................................................................2111.001001000
.................................................................................AGTTGGGATTTTTTAGATCAGCAC....................................................................................................................................................2411.001001000
.........................................................................................................................................TACTGGCCTACTAAGTCTCAT...............................................................................................2111.001001000
................................................................................TAGTTGGGATTTTTTAGATCAG.......................................................................................................................................................2211.001001000
.................................................................................AGTTGGGATTTTTTAGATCAGAT.....................................................................................................................................................2311.001000100
..................................................................................GTTGGGATTTTTTAGATCAGCC.....................................................................................................................................................2211.001001000
droVir3
AT-------------------CGAGG-------CATAAACTTTAAGCCTTAATGGTTGT-AA--GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATATATATATGTAT-CGTAAATCTTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAAAACCTCAGTATA--ACTTATGTGTGACTAATTT---------TT-----ATCAA----------------TAAATT-AAASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.................................................................................AGTTGGGATTTTTTAGATCAGC......................................................................................................................................................2219659.0096592873721000010020000248146718139920138236000002212000000020000000000000002088001099500000066111400000
..................................................................................GTTGGGATTTTTTAGATCAGC......................................................................................................................................................2112013.002013813625012000100003325143722037590001111000000000000000000000000000600399300000001030000000
...................................................................................TTGGGATTTTTTAGATCAGC......................................................................................................................................................2011689.001689151148200000000000138232412029140000000000000000000000000000000000100417100000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCAG....................................................................................................................................................2211545.00154506570020000000020012912281606511242920001012050010001000000000000000000100442400200000000000000
.................................................................................AGTTGGGATTTTTTAGATCAG.......................................................................................................................................................2111382.00138203130000000000086673592501481130000130000000000100000000000000000000871500200000000000000
.........................................................................................................................................TACTGGCCTACTAAGTCTCAAT..............................................................................................2211333.00133303673900000000000203109122786720168170000102202000000000000000000000000030067100010000001000000
....................................................................................TGGGATTTTTTAGATCAGCAG....................................................................................................................................................2111102.00110200501220000000238154311122540792030000012020000001000000000000000000000219200001000000000000
.........................................................................................................................................TACTGGCCTACTAAGTCTC.................................................................................................191616.00616659430000000000021100001200000000000000000000000000000000000006000000000000000000
..........................................................................................................................................ACTGGCCTACTAAGTCTC.................................................................................................181544.00544153610000000000003000101000000000000000000000000000000000000001000000000000000000
..................................................................................GTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................231505.0050501200010000100076460544271251030000000010100011000000000000000000000158100100000000000000
.................................................................................AGTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................231446.004460632000000000004429152618031600000000010000000000000000000000000200164000000000000000000
....................................................................................TGGGATTTTTTAGATCAGCAGT...................................................................................................................................................221431.00431003001000000005024354425034500000001000000001000000000000000000300184300000000000000000
..................................................................................GTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................221407.004070253000000000005039124216046570000010010000000000000000000000000000124000000000000000000
.................................................................................AGTTGGGATTTTTTAGATCA........................................................................................................................................................201406.004060109100000000000660012607130000000000000000000000000000000000000245100000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCA.....................................................................................................................................................211365.003650311000000000003631163925137440000012010000000000000000000000000000107100100000000000000
.........................................................................................................................................TACTGGCCTACTAAGTCTCAA...............................................................................................211327.003270331000000000000493821332606048000000100000000000000000000000000010025000000000000000000
.................................................................................AGTTGGGATTTTTTAGATC.........................................................................................................................................................191312.003120292200000000000010000000000000000000000000000000000000000010016000000000000000000
.........................................................................................................................................TACTGGCCTACTAAGTCTCA................................................................................................201310.003102332300000000000322623252305252000000000000000000000000000000000030034000000000000000000
.................................................................................AGTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................241296.00296071000000000005018201212011370000000000000000000000000000000000000146000000000000000000
..................................................................................GTTGGGATTTTTTAGATCAG.......................................................................................................................................................201166.001660300000000000013015300120001012000000000000000000000000000000133100000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................231143.0014323110000000000097011440613000000000000000000000000000000000000053200000000000000000
..........................................................................................................................................ACTGGCCTACTAAGTCTCAAT..............................................................................................211107.00107122110000000000011722860161400000000000000000000000000000000000007000000000000000000
.................................................................................AGTTGGGATTTTTTAGATCAGCT.....................................................................................................................................................231102.00102052000000000000141120005000000000000000000000000000000000000036000000000000000000
....................................................................................TGGGATTTTTTAGATCAGCA.....................................................................................................................................................20191.0091001000000000001713019501218000000000000000000000000000000000000015000000000000000000
..........................................................................................................................................ACTGGCCTACTAAGTCTCAATA.............................................................................................22189.008906700000000000136141280171400000000000000000000000000000000000001000000000000000000
..........................................................................................................................................ACTGGCCTACTAAGTCTCAATT.............................................................................................22153.0053082000000000007211520111100000000100000000000000000000000000000000200000000000000
..........................................................................................................................................ACTGGCCTACTAAGTCTCAATAT............................................................................................23148.0048121000000000007101034011800000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TACTGGCCTACTAAGTCTCAATT.............................................................................................23144.004401910000000000030221204800000000000000000000000000000000001001000000000000000000
..........................................................................................................................................ACTGGCCTACTAAGTCTCA................................................................................................19135.00350770000000000032103202100000000000000000000000000000000003004000000000000000000
...................................................................................TTGGGATTTTTTAGATCAG.......................................................................................................................................................19130.003008100000000000100001014000000000000000000000000000000000000014000000000000000000
..................................................................................GTTGGGATTTTTTAGATCA........................................................................................................................................................19126.002603100000000000000011001000000000000000000000000000000000000019000000000000000000
..........................................................................................................................................ACTGGCCTACTAAGTCTCAA...............................................................................................20125.00250220000000000033005303400000000000000000000000000000000000000000000000000000000
.................................................................................AGTTGGGATTTTTTAGATCAGT......................................................................................................................................................22125.0025010000000000000110010000000000000000000000000000000000000000012000000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCAT....................................................................................................................................................22121.00210200000000000010112201300000000000000000000000000000000000008000000000000000000
....................................................................................TGGGATTTTTTAGATCAGC......................................................................................................................................................19120.00200010000000000010002303000000000000000000000000000000000001009000000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCT.....................................................................................................................................................21120.002001800000000000000000100000000000000000000000000000000000000001000000000000000000
.........................................................................................................................................TACTGGCCTACTAAGTCTCAAC..............................................................................................22118.001801610000000000010000000000000000000000000000000000000000000000000000000000000000
.................................................................................AGTTGGGATTTTTTAGATCAGG......................................................................................................................................................22116.001601600000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................GTTGGGATTTTTTAGATC.........................................................................................................................................................18115.001501500000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TGGCCTACTAAGTCTCAATATT...........................................................................................22114.00140620000000000001001000200000000000000000000000000000000000002000000000000000000
....................................................................................TGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................23114.00140000000000000011001002400000000000000000000000000000000000005000000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCAGA...................................................................................................................................................23113.00130100000000000021001001000000000000000000000000000000000000007000000000000000000
.................................................................................AGTTGGGATTTTTTAGAT..........................................................................................................................................................18113.00130700000000000001000000000000000000000000000000000000000000005000000000000000000
..................................................................................GTTGGGATTTTTTAGATCAGCAA....................................................................................................................................................23112.00120100000000000001001200101000010000000000000000000000000000004000000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................24112.00120300000000000011010101100000000000000000000000000000000000003000000000000000000
..................................................................................GTTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................24111.00110300000000000040000001200000000000000000000000000000000000001000000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCAA....................................................................................................................................................22110.00100010000000000011002101100000000000000000000000000000000000002000000000000000000
.................................................................................AGTTGGGATTTTTTAGATCAGA......................................................................................................................................................22110.00100300000000000000000100000000000000000000000000000000000000006000000000000000000
.................................................................................AGTTGGGATTTTTTAGATCAT.......................................................................................................................................................2119.0090000000000000000000100200000000000000000000000000000000000006000000000000000000
..................................................................................GTTGGGATTTTTTAGATCAGCT.....................................................................................................................................................2219.0090600000000000000001000000000000000000000000000000000000000000002000000000000000
.................................................................................AGTTGGGATTTTTTAGATCAGCAT....................................................................................................................................................2419.0090000000000000020000200000000000000000000000000000000000000005000000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCAC....................................................................................................................................................2218.0080200000000000000000001000000000000000000000000000000000000005000000000000000000
.................................................................................AGTTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................2517.0070100000000000000000201000000000000000000000000000000000000003000000000000000000
.................................................................................AGTTGGGATTTTTTAGATT.........................................................................................................................................................1917.0070100000000000000000000000000000000000000000000000000000000006000000000000000000
...................................................................................TTGGGATTTTTTAGATCA........................................................................................................................................................1816.0060200000000000020001000100000000000000000000000000000000000000000000000000000000
.................................................................................AGTTGGGATTTTTTAGATCAGCG.....................................................................................................................................................2316.0060600000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TACTGGCCTACTAAGTCTCAAA..............................................................................................2216.0060210000000000010000101000000000000000000000000000000000000000000000000000000000
....................................................................................TGGGATTTTTTAGATCAGCAT....................................................................................................................................................2115.0050000000000000010000001100000000000000000000000000000000000002000000000000000000
..................................................................................GTTGGGATTTTTTAGATCAGG......................................................................................................................................................2115.0050500000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TACTGGCCTACTAAGTCTCT................................................................................................2015.0050400000000000000000100000000000000000000000000000000000000000000000000000000000
..................................................................................GTTGGGATTTTTTAGATCAGCAT....................................................................................................................................................2315.0050000000000000001001000000000000000000000000000000000000000003000000000000000000
....................................................................................TGGGATTTTTTAGATCAGCAGC...................................................................................................................................................2215.0050000000000000011000000000000000000000000000000000000000000003000000000000000000
..................................................................................GTTGGGATTTTTTAGATCAGCAGA...................................................................................................................................................2414.0040000000000000000000101100000000000000000000000000000000000001000000000000000000
.........................................................................................................................................TACTGGCCTACTAAGTCT..................................................................................................1814.0040200000000000001000001000000000000000000000000000000000000000000000000000000000
.................................................................................AGTTGGGATTTTTTAGATCAC.......................................................................................................................................................2114.0040000000000000000000000100000000000000000000000000000000000003000000000000000000
.................................................................................AGTTGGGATTTTTTAGATCAGCC.....................................................................................................................................................2314.0040200000000000000000000000000000000000000000000000000000000002000000000000000000
....................................................................................TGGGATTTTTTAGATCAGCAGA...................................................................................................................................................2214.0040000000000000010001000000000000000000000000000000000000000002000000000000000000
.................................................................................AGTTGGGATTTTTTAGATCG........................................................................................................................................................2013.0030200000000000000000000000000000000000000000000000000000000001000000000000000000
.................................................................................AGTTGGGATTTTTTAGATCAGCTT....................................................................................................................................................2413.0030000000000000000000001000000000000000000000000000000000000002000000000000000000
...................................................................................TTGGGATTTTTTAGATCAGT......................................................................................................................................................2013.0030100000000000000000000000000000000000000000000000000000000002000000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCTT....................................................................................................................................................2213.0030300000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCAGG...................................................................................................................................................2313.0030300000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................GTTGGGATTTTTTAGATCAGT......................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000003000000000000000000
...................................................................................TTGGGATTTTTTAGATCAGG......................................................................................................................................................2013.0030300000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................AGTTGGGATTTTTTAGATCT........................................................................................................................................................2013.0030200000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCG.....................................................................................................................................................2113.0030200000000000000000000000000000000000000000000000000000000001000000000000000000
.......................................................................................GATTTTTTAGATCAGCAG....................................................................................................................................................1812.0020000000000000000000001100000000000000000000000000000000000000000000000000000000
........................................................................................................................................CTACTGGCCTACTAAGTCTCAAT..............................................................................................2312.0020000000000000011000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................ACTGGCCTACTAAGTCTCAATATT...........................................................................................2412.0020100000000000000000000100000000000000000000000000000000000000000000000000000000
....................................................................................TGGGATTTTTTAGATCAGCAA....................................................................................................................................................2112.0020000000000000010000000000000000000000000000000000000000000001000000000000000000
.........................................................................................................................................TACTGGCCTACTAAGTCTCAATAA............................................................................................2412.0020000000000000010000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TACTGGCCTACTAAGTCTCAAG..............................................................................................2212.0020100000000000000000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TACTGGCCTACTAAGTCTCAT...............................................................................................2112.0020000000000000000000000000000000000000000000000000000000000002000000000000000000
...........................................................................................................................................CTGGCCTACTAAGTCTCAAT..............................................................................................2012.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................GTTGGGATTTTTTAGATCAGCC.....................................................................................................................................................2212.0020100000000000000000000000000000000000000000000000000000000001000000000000000000
...........................................................................................................................................CTGGCCTACTAAGTCTCAA...............................................................................................1912.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCAGC...................................................................................................................................................2312.0020000000000000010000000000000000000000000000000000000000000001000000000000000000
.........................................................................................................................................TACTGGCCTACTAAGTCTCC................................................................................................2012.0020100000000000000000001000000000000000000000000000000000000000000000000000000000
droGri2
TTATAACT-----A------TCGAGGAAATTTACATA-------------AATGTGCTA-AA--GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAAGACCTTT-ATCGTAAATCTTCTACTGGCCTACTAAGTCCCAATATAATGGGAGTAAAACCCTCATTATA--AA--------------------------------------------TTAT-------------GTASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAT..............................................................................................2219.00990
....................................................................................TGGGATTTTTTAGATCAGCAG....................................................................................................................................................2112.00211
.........................................................................................................................................TACTGGCCTACTAAGTCCCA................................................................................................2011.00110
....................................................................................TGGGATTTTTTAGATCAGCAGT...................................................................................................................................................2211.00110
....................................................................................TGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................2311.00110
..................................................................................GTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................2311.00101
..................................................................................GTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................2211.00101
droWil2
----------------------------------------------------------------GTGTGTGCGCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACAAGTCAAAAATTTATTATCATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGACGA--AATGA---------------------AT-T-----------------TATGTG------AAA-ATASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...................................................................................TTGGGATTTTTTAGATCAGC......................................................................................................................................................20118331.0018331147100743610
.................................................................................GGTTGGGATTTTTTAGATCAGC......................................................................................................................................................2215563.00556331310122429
...................................................................................TTGGGATTTTTTAGATCAGCAG....................................................................................................................................................2212263.00226355111811692
...................................................................................TTGGGATTTTTTAGATCAGCA.....................................................................................................................................................211819.00819545021271
....................................................................................TGGGATTTTTTAGATCAGCAGT...................................................................................................................................................221707.007070281696
...................................................................................TTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................231433.00433180021250
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAC..............................................................................................221310.00310881000212
.........................................................................................................................................TACTGGCCTACTAAGTCCCA................................................................................................201288.0028816700265
.................................................................................GGTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................231283.0028359100223
....................................................................................TGGGATTTTTTAGATCAGCAG....................................................................................................................................................211252.002522111247
.................................................................................GGTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................241193.001938300182
...................................................................................TTGGGATTTTTTAGATCAGCT.....................................................................................................................................................211153.001531440009
.........................................................................................................................................TACTGGCCTACTAAGTCCCAA...............................................................................................211129.001295400120
...................................................................................TTGGGATTTTTTAGATCAG.......................................................................................................................................................191116.001165501060
...................................................................................TTGGGATTTTTTAGATCAGCAGA...................................................................................................................................................23189.00893700151
.................................................................................GGTTGGGATTTTTTAGATCAG.......................................................................................................................................................21187.00871300074
...................................................................................TTGGGATTTTTTAGATCAGCAT....................................................................................................................................................22169.00694500024
...................................................................................TTGGGATTTTTTAGATCAGCAA....................................................................................................................................................22167.00672901037
.........................................................................................................................................TACTGGCCTACTAAGTCCC.................................................................................................19161.00614600015
....................................................................................TGGGATTTTTTAGATCAGC......................................................................................................................................................19149.0049500044
.................................................................................GGTTGGGATTTTTTAGATC.........................................................................................................................................................19148.00482000028
.................................................................................GGTTGGGATTTTTTAGATCA........................................................................................................................................................20146.0046300043
...................................................................................TTGGGATTTTTTAGATCA........................................................................................................................................................18141.00412300018
...................................................................................TTGGGATTTTTTAGATCAGCAC....................................................................................................................................................22140.00403000010
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACT.............................................................................................23134.00341610017
...................................................................................TTGGGATTTTTTAGATCAGCC.....................................................................................................................................................21132.0032240008
...................................................................................TTGGGATTTTTTAGATCAGA......................................................................................................................................................20122.0022700015
...................................................................................TTGGGATTTTTTAGATCAGT......................................................................................................................................................20122.00221000012
..................................................................................GTTGGGATTTTTTAGATCAGC......................................................................................................................................................21120.0020140006
.................................................................................GGTTGGGATTTTTTAGATCAGCAA....................................................................................................................................................24119.0019100018
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACA.............................................................................................22119.0019130015
....................................................................................TGGGATTTTTTAGATCAGCAGA...................................................................................................................................................22118.0018000117
...................................................................................TTGGGATTTTTTAGATCAGCAGG...................................................................................................................................................23118.0018120006
...................................................................................TTGGGATTTTTTAGATCAGCAGC...................................................................................................................................................23118.0018170001
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACAT............................................................................................23115.001525008
....................................................................................TGGGATTTTTTAGATCAGCA.....................................................................................................................................................20115.0015000015
.................................................................................GGTTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................25112.0012000012
...................................................................................TTGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................24112.0012120000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAT..............................................................................................22111.001120009
.................................................................................GGTTGGGATTTTTTAGATCAGA......................................................................................................................................................22111.001120009
...................................................................................TTGGGATTTTTTAGATCAGG......................................................................................................................................................2028.0016160000
...................................................................................TTGGGATTTTTTAGATCAGCATA...................................................................................................................................................2318.00860002
.................................................................................GGTTGGGATTTTTTAGATCAGT......................................................................................................................................................2218.00830005
..........................................................................................................................................ACTGGCCTACTAAGTCCCAAC..............................................................................................2117.00723002
...................................................................................TTGGGATTTTTTAGATCAGCG.....................................................................................................................................................2116.00660000
...................................................................................TTGGGATTTTTTAGATCT........................................................................................................................................................1816.00620004
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACA.............................................................................................2316.00600006
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACC.............................................................................................2316.00631002
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACT.............................................................................................2216.00620004
............................................................................................................................................TGGCCTACTAAGTCCCAACATT...........................................................................................2215.00511003
..........................................................................................................................................ACTGGCCTACTAAGTCCC.................................................................................................1815.00550000
.................................................................................GGTTGGGATTTTTTAGATCAGCT.....................................................................................................................................................2315.00520003
.................................................................................GGTTGGGATTTTTTAGATCAGCC.....................................................................................................................................................2315.00520003
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAA..............................................................................................2215.00500005
....................................................................................TGGGATTTTTTAGATCAGCAGG...................................................................................................................................................2214.00400004
...................................................................................TTGGGATTTTTTAGATCAGCACC...................................................................................................................................................2313.00320001
.........................................................................................................................................TACTGGCCTACTAAGTCC..................................................................................................1813.00320001
.................................................................................GGTTGGGATTTTTTAGATCAGCG.....................................................................................................................................................2313.00330000
...................................................................................TTGGGATTTTTTAGATCAGCTC....................................................................................................................................................2213.00330000
.................................................................................GGTTGGGATTTTTTAGATCT........................................................................................................................................................2013.00300003
....................................................................................TGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................2313.00300003
.....................................................................................GGGATTTTTTAGATCAGC......................................................................................................................................................1813.00330000
.....................................................................................GGGATTTTTTAGATCAGCAGT...................................................................................................................................................2112.00200002
.........................................................................................................................................TACTGGCCTACTAAGTCCCAT...............................................................................................2112.00201001
..................................................................................GTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................2212.00200002
...................................................................................TTGGGATTTTTTAGATCAGCCT....................................................................................................................................................2212.00220000
.................................................................................GGTTGGGATTTTTTAGATCAGCAC....................................................................................................................................................2412.00210001
...................................................................................TTGGGATTTTTTAGATCAGCAGTTC.................................................................................................................................................2512.00210001
...................................................................................TTGGGATTTTTTAGATCAGCATC...................................................................................................................................................2312.00220000
....................................................................................TGGGATTTTTTAGATCAGCAA....................................................................................................................................................2112.00200002
...................................................................................TTGGGATTTTTTAGATCAGCAGTA..................................................................................................................................................2412.00220000
.................................................................................GGTTGGGATTTTTTAGATCAA.......................................................................................................................................................2112.00210001
..........................................................................................................TATTGCTACAAGTCAAAAATTTATTAT........................................................................................................................2712.00200002
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACATT...........................................................................................2412.00200002
...................................................................................TTGGGATTTTTTAGATCAGCAGTCC.................................................................................................................................................2512.00210001
.................................................................................GGTTGGGATTTTTTAGATCC........................................................................................................................................................2012.00200002
.................................................................................GGTTGGGATTTTTTAGATCAGG......................................................................................................................................................2212.00220000
.....................................................................................GGGATTTTTTAGATCAGCAG....................................................................................................................................................2012.00200002
..........................................................................................................TATTGCTACAAGTCAAAAATTTATT..........................................................................................................................2512.00200002
.......................................................................................GATTTTTTAGATCAGCAG....................................................................................................................................................1812.00210001
....................................................................................TGGGATTTTTTAGATCAG.......................................................................................................................................................1812.00200002
.................................................................................GGTTGGGATTTTTTAGATCACA......................................................................................................................................................2211.00100001
.................................................................................GGTTGGGATTTTTTAGATCAC.......................................................................................................................................................2111.00100001
...................................................................................TTGGGATTTTTTAGATCAGCCC....................................................................................................................................................2211.00100001
..........................................................................................................................................ACTGGCCTACTAAGTCCCA................................................................................................1911.00100001
....................................................................................TGGGATTTTTTAGATCAGCAGTCC.................................................................................................................................................2411.00100001
...................................................................................TTGGGATTTTTTAGATCAGCAGTCT.................................................................................................................................................2511.00110000
..................................................................................GTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................2311.00100001
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAG..............................................................................................2211.00100001
dp5
----------------------------------------------------------------G--TGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGTATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-T------------------------------------AACAATAA-GACTATGTT-----------AASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.................................................................................AGTTGGGATTTTTTAGATCAGC......................................................................................................................................................2211375.00137512220572075412012
...................................................................................TTGGGATTTTTTAGATCAGC......................................................................................................................................................2011320.00132031602140107413000
...................................................................................TTGGGATTTTTTAGATCAGCAG....................................................................................................................................................2211111.00111103915619995208
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAC..............................................................................................2211054.001054041129570440000
.................................................................................AGTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................231523.0052301203404770000
...................................................................................TTGGGATTTTTTAGATCAGCA.....................................................................................................................................................211486.0048611203804341000
.................................................................................AGTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................241466.00466030604543000
.................................................................................AGTTGGGATTTTTTAGATCAG.......................................................................................................................................................211397.00397090403813000
..................................................................................GTTGGGATTTTTTAGATCAGC......................................................................................................................................................211354.0035407059027530100
....................................................................................TGGGATTTTTTAGATCAGCAGT...................................................................................................................................................221259.002590713502133000
....................................................................................TGGGATTTTTTAGATCAGCAG....................................................................................................................................................211164.00164050601520001
...................................................................................TTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................231134.001340102601070000
.........................................................................................................................................TACTGGCCTACTAAGTCCCA................................................................................................20185.00850210360280000
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACA.............................................................................................22178.007803073020000
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACAT............................................................................................23172.007205259060000
.................................................................................AGTTGGGATTTTTTAGATCA........................................................................................................................................................20172.007213020651000
..........................................................................................................................................ACTGGCCTACTAAGTCCCAAC..............................................................................................21170.007006063010000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAA...............................................................................................21166.00660230200230000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACT.............................................................................................23158.005804052020000
...................................................................................TTGGGATTTTTTAGATCAG.......................................................................................................................................................19143.004304000381000
.........................................................................................................................................TACTGGCCTACTAAGTCCC.................................................................................................19136.003602031030000
....................................................................................TGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................23132.003201070231000
....................................................................................TGGGATTTTTTAGATCAGC......................................................................................................................................................19130.003001050240000
...................................................................................TTGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................24130.0030010100190000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACC.............................................................................................23127.002701026000000
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACC.............................................................................................22126.002600025010000
........................................................................................................................................CTACTGGCCTACTAAGTCCCAAC..............................................................................................23125.002501024000000
..................................................................................GTTGGGATTTTTTAGATCAG.......................................................................................................................................................20120.002001000180010
...................................................................................TTGGGATTTTTTAGATCAGCAGA...................................................................................................................................................23117.001700000170000
....................................................................................TGGGATTTTTTAGATCAGCA.....................................................................................................................................................20116.001600000140020
.................................................................................AGTTGGGATTTTTTAGATCAGCT.....................................................................................................................................................23114.001400040100000
...................................................................................TTGGGATTTTTTAGATCAGCAA....................................................................................................................................................22113.001300000130000
...................................................................................TTGGGATTTTTTAGATCA........................................................................................................................................................18113.001300000130000
.................................................................................AGTTGGGATTTTTTAGATC.........................................................................................................................................................19112.00121304040000
....................................................................................TGGGATTTTTTAGATCAGCAGC...................................................................................................................................................22112.001200012000000
.................................................................................AGTTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................2519.0090001080000
............................................................................................................................................TGGCCTACTAAGTCCCAACATT...........................................................................................2219.0090108000000
...................................................................................TTGGGATTTTTTAGATCAGCT.....................................................................................................................................................2118.0080004040000
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACAC............................................................................................2318.0080008000000
.........................................................................................................................................TACTGGCCTACTAAGTCC..................................................................................................1817.0070007000000
..........................................................................................................TATTGCTATACAGCCGTATTAAT............................................................................................................................2317.0070000070000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACA.............................................................................................2316.0060006000000
...................................................................................TTGGGATTTTTTAGATCAGCAC....................................................................................................................................................2216.0060004020000
..................................................................................GTTGGGATTTTTTAGATCA........................................................................................................................................................1915.0050000050000
....................................................................................TGGGATTTTTTAGATCAGCAGA...................................................................................................................................................2215.0050000050000
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACT.............................................................................................2215.0050005000000
.................................................................................AGTTGGGATTTTTTAGATCAGCAT....................................................................................................................................................2415.0050000050000
...................................................................................TTGGGATTTTTTAGATCAGCAGTTT.................................................................................................................................................2514.0040000040000
.................................................................................AGTTGGGATTTTTTAGATCAGCAA....................................................................................................................................................2414.0040001030000
...................................................................................TTGGGATTTTTTAGATCAGCAGC...................................................................................................................................................2314.0040011020000
...................................................................................TTGGGATTTTTTAGATCAGCAT....................................................................................................................................................2214.0040000040000
...................................................................................TTGGGATTTTTTAGATCAGA......................................................................................................................................................2014.0040000040000
...................................................................................TTGGGATTTTTTAGATCAGCC.....................................................................................................................................................2114.0040003010000
...........................................................................................................................................CTGGCCTACTAAGTCCCAACA.............................................................................................2113.0030102000000
....................................................................................TGGGATTTTTTAGATCAGCAGTTT.................................................................................................................................................2413.0030100020000
.................................................................................AGTTGGGATTTTTTAGATCAGT......................................................................................................................................................2213.0030000030000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAA..............................................................................................2213.0030002010000
..........................................................................................................................................ACTGGCCTACTAAGTCCCAA...............................................................................................2013.0030200010000
.................................................................................AGTTGGGATTTTTTAGATCAGCAGA...................................................................................................................................................2513.0030001020000
..................................................................................GTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................2213.0030100020000
...................................................................................TTGGGATTTTTTAGATCAGT......................................................................................................................................................2012.0020001010000
.................................................................................AGTTGGGATTTTTTAGATCAT.......................................................................................................................................................2112.0020000020000
...................................................................................TTGGGATTTTTTAGATCAGCAGTA..................................................................................................................................................2412.0020000020000
...........................................................................................................................................CTGGCCTACTAAGTCCCAAC..............................................................................................2012.0020002000000
............................................................................................................................................TGGCCTACTAAGTCCCAAC..............................................................................................1912.0020101000000
............................................................................................................................................TGGCCTACTAAGTCCCAACAT............................................................................................2112.0020002000000
..................................................................................GTTGGGATTTTTTAGATCAGCC.....................................................................................................................................................2212.0020001010000
.................................................................................AGTTGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................2612.0020000020000
...................................................................................TTGGGATTTTTTAGATCAGCTT....................................................................................................................................................2212.0020001010000
.................................................................................AGTTGGGATTTTTTAGATCAGA......................................................................................................................................................2212.0020001010000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAT..............................................................................................2212.0020001010000
..........................................................................................................................................ACTGGCCTACTAAGTCCCA................................................................................................1912.0020001010000
.........................................................................................................TTATTGCTATACAGCCGTATT...............................................................................................................................2112.0020000020000
.......................................................................................................................................TCTACTGGCCTACTAAGTCCCAAC..............................................................................................2412.0020002000000
....................................................................................TGGGATTTTTTAGATCAGCAGG...................................................................................................................................................2212.0020000020000
..................................................................................GTTGGGATTTTTTAGATCAGA......................................................................................................................................................2112.0020000020000
.....................................................................................GGGATTTTTTAGATCAGC......................................................................................................................................................1811.0010100000000
..........................................................................................................TATTGCTATACAGCCGTATT...............................................................................................................................2011.0010000010000
.................................................................................AGTTGGGATTTTTTAGATCAGG......................................................................................................................................................2211.0010000010000
..................................................................................................................................AATCTTCTACTGGCCTACTAAGTCCCAAC..............................................................................................2911.0010001000000
....................................................................................TGGGATTTTTTAGATCAGCT.....................................................................................................................................................2011.0010000010000
.............................................................................................................................................GGCCTACTAAGTCCCAAC..............................................................................................1811.0010001000000
droPer2
----------------------------------------------------------------G--TGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGTATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-T------------------------------------AACAATAA-GACTATGTT-----------AASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...................................................................................TTGGGATTTTTTAGATCAGCAG....................................................................................................................................................2212903.00290303201329151527
.................................................................................AGTTGGGATTTTTTAGATCAGC......................................................................................................................................................2211640.001640511074586613
...................................................................................TTGGGATTTTTTAGATCAGC......................................................................................................................................................2011546.00154681205729477
.................................................................................AGTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................2311386.00138601406377323
.................................................................................AGTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................2411321.00132108076154012
....................................................................................TGGGATTTTTTAGATCAGCAGT...................................................................................................................................................2211016.00101605042456918
...................................................................................TTGGGATTTTTTAGATCAGCA.....................................................................................................................................................211902.0090201003285622
....................................................................................TGGGATTTTTTAGATCAGCAG....................................................................................................................................................211726.0072601102894224
.................................................................................AGTTGGGATTTTTTAGATCAG.......................................................................................................................................................211677.0067700024342311
..................................................................................GTTGGGATTTTTTAGATCAGC......................................................................................................................................................211586.0058607028728111
...................................................................................TTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................231321.003210101471703
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAC..............................................................................................221190.00190024081850
.........................................................................................................................................TACTGGCCTACTAAGTCCCAA...............................................................................................211140.00140014049770
.........................................................................................................................................TACTGGCCTACTAAGTCCCA................................................................................................201113.00113010039640
.................................................................................AGTTGGGATTTTTTAGATCA........................................................................................................................................................201101.0010101026722
...................................................................................TTGGGATTTTTTAGATCAGCAGA...................................................................................................................................................23175.007500030432
...................................................................................TTGGGATTTTTTAGATCAG.......................................................................................................................................................19155.005504017340
....................................................................................TGGGATTTTTTAGATCAGCA.....................................................................................................................................................20149.004904019260
.................................................................................AGTTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................25143.004300023200
...................................................................................TTGGGATTTTTTAGATCAGCAA....................................................................................................................................................22140.004000016240
...................................................................................TTGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................24139.003900014250
....................................................................................TGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................23138.003800016220
..................................................................................GTTGGGATTTTTTAGATCAG.......................................................................................................................................................20136.003600019161
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACAT............................................................................................23135.003501014200
....................................................................................TGGGATTTTTTAGATCAGC......................................................................................................................................................19130.003001015140
.................................................................................AGTTGGGATTTTTTAGATCAGCAT....................................................................................................................................................24130.003000012180
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACA.............................................................................................22127.00270207180
.................................................................................AGTTGGGATTTTTTAGATCAGCT.....................................................................................................................................................23124.00240004200
...................................................................................TTGGGATTTTTTAGATCA........................................................................................................................................................18119.00190004150
...................................................................................TTGGGATTTTTTAGATCAGCAT....................................................................................................................................................22118.00180002160
....................................................................................TGGGATTTTTTAGATCAGCAGA...................................................................................................................................................22117.00170007100
.........................................................................................................................................TACTGGCCTACTAAGTCCC.................................................................................................19116.00160006100
..........................................................................................................TATTGCTATACAGCCGTATTAAT............................................................................................................................23115.0015000780
...................................................................................TTGGGATTTTTTAGATCAGCAGC...................................................................................................................................................23113.0013000760
...................................................................................TTGGGATTTTTTAGATCAGCAC....................................................................................................................................................22113.0013000490
....................................................................................TGGGATTTTTTAGATCAGCAGC...................................................................................................................................................22111.0011000380
...................................................................................TTGGGATTTTTTAGATCAGCT.....................................................................................................................................................21111.00110000101
.................................................................................AGTTGGGATTTTTTAGATCAGCAGA...................................................................................................................................................25111.0011000470
..................................................................................GTTGGGATTTTTTAGATCA........................................................................................................................................................19111.0011000470
..........................................................................................................................................ACTGGCCTACTAAGTCCCAA...............................................................................................20110.0010000460
..................................................................................GTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................2317.007010330
...................................................................................TTGGGATTTTTTAGATCAGCG.....................................................................................................................................................2117.007000340
.................................................................................AGTTGGGATTTTTTAGATCAGCAC....................................................................................................................................................2417.007000340
.................................................................................AGTTGGGATTTTTTAGATCAGCAA....................................................................................................................................................2417.007000340
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACT.............................................................................................2317.007010330
..........................................................................................................................................ACTGGCCTACTAAGTCCCAAC..............................................................................................2117.007010240
..................................................................................GTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................2216.006000222
...................................................................................TTGGGATTTTTTAGATCAGT......................................................................................................................................................2016.006000060
.........................................................................................................TTATTGCTATACAGCCGTATT...............................................................................................................................2115.005000050
.................................................................................AGTTGGGATTTTTTAGATC.........................................................................................................................................................1915.005110210
..........................................................................................................TATTGCTATACAGCCGTATT...............................................................................................................................2014.004000130
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACA.............................................................................................2314.004010030
............................................................................................................................................TGGCCTACTAAGTCCCAACATT...........................................................................................2214.004000040
...................................................................................TTGGGATTTTTTAGATCAGA......................................................................................................................................................2014.004000130
...................................................................................TTGGGATTTTTTAGATCAGCC.....................................................................................................................................................2114.004000220
.................................................................................AGTTGGGATTTTTTAGAT..........................................................................................................................................................1814.004000220
.................................................................................AGTTGGGATTTTTTAGATCAGCG.....................................................................................................................................................2313.003000030
.................................................................................AGTTGGGATTTTTTAGATCAGA......................................................................................................................................................2213.003000300
...................................................................................TTGGGATTTTTTAGATCAGCTT....................................................................................................................................................2213.003000030
...................................................................................TTGGGATTTTTTAGATCAGCCT....................................................................................................................................................2213.003000030
.................................................................................AGTTGGGATTTTTTAGATCAT.......................................................................................................................................................2113.003000030
.........................................................................................................................................TACTGGCCTACTAAGTCC..................................................................................................1813.003000030
.........................................................................................................TTATTGCTATACAGCCGTATTAAT............................................................................................................................2413.003000210
.................................................................................AGTTGGGATTTTTTAGATCAGT......................................................................................................................................................2213.003010020
.................................................................................AGTTGGGATTTTTTAGATCAGCC.....................................................................................................................................................2313.003000030
..................................................................................GTTGGGATTTTTTAGATCAGA......................................................................................................................................................2113.003000210
..........................................................................................................TATTGCTATACAGCCGTATTA..............................................................................................................................2113.003000030
....................................................................................TGGGATTTTTTAGATCAGCAC....................................................................................................................................................2113.003000030
...................................................................................TTGGGATTTTTTAGATCAGCACC...................................................................................................................................................2313.003000120
....................................................................................TGGGATTTTTTAGATCAGCAGTTT.................................................................................................................................................2412.002000020
.................................................................................AGTTGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................2612.002000110
....................................................................................TGGGATTTTTTAGATCAGCAGTA..................................................................................................................................................2312.002010100
...................................................................................TTGGGATTTTTTAGATCAGCAGTTT.................................................................................................................................................2512.002000200
.................................................................................AGTTGGGATTTTTTAGATCAGCAAA...................................................................................................................................................2512.002000110
droAna3
----------------------------------------------------------------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCATATTCATAAATTCTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTATT---------------------------------------GAAAA----------------TAAAAT-ACASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.................................................................................GGTTGGGATTTTTTAGATCAGC......................................................................................................................................................2211950.00195020063111874
...................................................................................TTGGGATTTTTTAGATCAGC......................................................................................................................................................2011933.001933000265221646
...................................................................................TTGGGATTTTTTAGATCAGCAG....................................................................................................................................................2211347.001347141064056636
....................................................................................TGGGATTTTTTAGATCAGCAGT...................................................................................................................................................221738.0073841020549479
....................................................................................TGGGATTTTTTAGATCAGCAG....................................................................................................................................................211736.00736160033216372
..................................................................................GTTGGGATTTTTTAGATCAGC......................................................................................................................................................211474.00474200435424
.................................................................................GGTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................231306.00306200455254
...................................................................................TTGGGATTTTTTAGATCAGCA.....................................................................................................................................................211295.002952001727114
.................................................................................GGTTGGGATTTTTTAGATCAG.......................................................................................................................................................211285.00285400518222
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAC..............................................................................................221269.0026911420205128
.................................................................................GGTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................241229.00229000334192
.........................................................................................................................................TACTGGCCTACTAAGTCCCA................................................................................................201213.002133700130163
..................................................................................GTTGGGATTTTTTAGATCAG.......................................................................................................................................................201156.00156000165135
...................................................................................TTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................231136.00136210501073
.........................................................................................................................................TACTGGCCTACTAAGTCCCAA...............................................................................................211128.00128220016288
....................................................................................TGGGATTTTTTAGATCAGC......................................................................................................................................................191115.0011500017098
.................................................................................GGTTGGGATTTTTTAGATCA........................................................................................................................................................201106.0010610015486
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACA.............................................................................................22165.006537007021
...................................................................................TTGGGATTTTTTAGATCAG.......................................................................................................................................................19152.005210023127
..................................................................................GTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................22147.004710013033
...................................................................................TTGGGATTTTTTAGATCAGCAT....................................................................................................................................................22141.004100017024
....................................................................................TGGGATTTTTTAGATCAGCA.....................................................................................................................................................20141.004120015123
..................................................................................GTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................23140.00400007132
...................................................................................TTGGGATTTTTTAGATCAGCAGA...................................................................................................................................................23126.00260007019
....................................................................................TGGGATTTTTTAGATCAGCAGA...................................................................................................................................................22126.00260001223
...................................................................................TTGGGATTTTTTAGATCAGCAA....................................................................................................................................................22125.00250008215
.................................................................................GGTTGGGATTTTTTAGATC.........................................................................................................................................................19124.00240001023
.................................................................................GGTTGGGATTTTTTAGATCAGCAA....................................................................................................................................................24123.00230000023
..................................................................................GTTGGGATTTTTTAGATCA........................................................................................................................................................19121.00210002019
.................................................................................GGTTGGGATTTTTTAGATCAGA......................................................................................................................................................22119.00190000019
....................................................................................TGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................23118.00180007011
..................................................................................GTTGGGATTTTTTAGATC.........................................................................................................................................................18116.00160000016
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACAT............................................................................................23115.0015300615
..........................................................................................................................................ACTGGCCTACTAAGTCCCAAC..............................................................................................21114.00141200200
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACT.............................................................................................23113.0013600007
..................................................................................GTTGGGATTTTTTAGATCAGCAA....................................................................................................................................................23112.00120001011
....................................................................................TGGGATTTTTTAGATCAGCAT....................................................................................................................................................21111.0011000308
.................................................................................GGTTGGGATTTTTTAGATCAGT......................................................................................................................................................22110.0010000118
..........................................................................................................................................ACTGGCCTACTAAGTCCCAA...............................................................................................2019.009500103
...................................................................................TTGGGATTTTTTAGATCA........................................................................................................................................................1819.009000702
.................................................................................GGTTGGGATTTTTTAGAT..........................................................................................................................................................1818.008000008
..................................................................................GTTGGGATTTTTTAGATCAGA......................................................................................................................................................2118.008000107
.....................................................................................GGGATTTTTTAGATCAGCAG....................................................................................................................................................2017.007600100
.........................................................................................................................................TACTGGCCTACTAAGTCCC.................................................................................................1917.007200005
.................................................................................GGTTGGGATTTTTTAGATCAT.......................................................................................................................................................2117.007000115
...................................................................................TTGGGATTTTTTAGATCAGT......................................................................................................................................................2016.006000204
...................................................................................TTGGGATTTTTTAGATCAGCAGC...................................................................................................................................................2316.006000105
...................................................................................TTGGGATTTTTTAGATCAGA......................................................................................................................................................2016.006000105
...................................................................................TTGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................2416.006000303
...................................................................................TTGGGATTTTTTAGATCAGCC.....................................................................................................................................................2115.005000401
.................................................................................GGTTGGGATTTTTTAGATCAGCT.....................................................................................................................................................2315.005000302
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACT.............................................................................................2215.005200003
............................................................................................................................................TGGCCTACTAAGTCCCAACAT............................................................................................2114.004200101
............................................................................................................................................TGGCCTACTAAGTCCCAACATT...........................................................................................2214.004300100
...................................................................................TTGGGATTTTTTAGATCAGCT.....................................................................................................................................................2114.004000202
...................................................................................TTGGGATTTTTTAGATCAGCAGTTT.................................................................................................................................................2513.003000102
.................................................................................GGTTGGGATTTTTTAGATCAGCAT....................................................................................................................................................2413.003000012
.................................................................................GGTTGGGATTTTTTAGATCAGCAC....................................................................................................................................................2413.003000003
....................................................................................TGGGATTTTTTAGATCAGCAGC...................................................................................................................................................2213.003000102
....................................................................................TGGGATTTTTTAGATCAGCAA....................................................................................................................................................2113.003000102
...................................................................................TTGGGATTTTTTAGATCAGCTT....................................................................................................................................................2213.003000201
.................................................................................GGTTGGGATTTTTTAGATCAA.......................................................................................................................................................2113.003000003
....................................................................................TGGGATTTTTTAGATCAGCAGTA..................................................................................................................................................2312.002000200
...................................................................................TTGGGATTTTTTAGATCAGCATA...................................................................................................................................................2312.002000200
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAT..............................................................................................2212.002200000
............................................................................................................................................TGGCCTACTAAGTCCCAACA.............................................................................................2012.002200000
.........................................................................................................................................TACTGGCCTACTAAGTCCCT................................................................................................2012.002000002
....................................................................................TGGGATTTTTTAGATCAGCAGTTT.................................................................................................................................................2412.002000101
.....................................................................................GGGATTTTTTAGATCAGC......................................................................................................................................................1812.002000101
...................................................................................TTGGGATTTTTTAGATCAGCTA....................................................................................................................................................2212.002000101
...................................................................................TTGGGATTTTTTAGATCAGG......................................................................................................................................................2012.002000101
.........................................................................................................................................TACTGGCCTACTAAGTCCCAT...............................................................................................2112.002000101
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACA.............................................................................................2312.002100001
....................................................................................TGGGATTTTTTAGATCAGCAGTC..................................................................................................................................................2312.002000110
..................................................................................GTTGGGATTTTTTAGATCT........................................................................................................................................................1912.002000002
..........................................................................................................TATTGCTATATTGCCATATTC..............................................................................................................................2112.002100001
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAA..............................................................................................2212.002000002
....................................................................................TGGGATTTTTTAGATCAGCAC....................................................................................................................................................2112.002000101
...........................................................................................................................................CTGGCCTACTAAGTCCCAACA.............................................................................................2112.002200000
.................................................................................GGTTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................2512.002000101
..........................................................................................................................................ACTGGCCTACTAAGTCCCA................................................................................................1912.002100001
....................................................................................TGGGATTTTTTAGATCAG.......................................................................................................................................................1812.002000011
...................................................................................TTGGGATTTTTTAGATCAGCAGTA..................................................................................................................................................2412.002000002
..................................................................................GTTGGGATTTTTTAGATCAT.......................................................................................................................................................2012.002000002
.........................................................................................................TTATTGCTATATTGCCATATT...............................................................................................................................2112.002000002
...................................................................................TTGGGATTTTTTAGATCAGCG.....................................................................................................................................................2112.002000200
.................................................................................GGTTGGGATTTTTTAGATCAGCAGA...................................................................................................................................................2512.002000002
.................................................................................GGTTGGGATTTTTTAGATCT........................................................................................................................................................2012.002000002
....................................................................................TGGGATTTTTTAGATCAGCAGTTC.................................................................................................................................................2411.001000001
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACATT...........................................................................................2411.001000001
.................................................................................GGTTGGGATTTTTTAGATCAGCG.....................................................................................................................................................2311.001000001
droBip1
----------------------------------------------------------------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCATATTCATATATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTAGTTATGATAA-------------------------------------------------------TTA-TTGSizeHit CountTotal NormTotal
No Reads
droKik1
----------------------------------------------------------------GTGTGTGCCCTCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATTGCCATATTTTTAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGTTGCAATAATGGTGTG-CCAATTG---------T------------AAATGC----T-AAAT----A-AAASizeHit CountTotal NormTotal
No Reads
droFic1
A-----------GA-----------------------------------------TCGAAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTAT--AGCCATATTTATTATTAATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCGCAGGCCATGTCAGTAGAATG-TC--TTAAAAGTGT--TA-----AAAAA----------------TAAATTTATASizeHit CountTotal NormTotal
No Reads
droEle1
TT---CTT----GT-----------------------------------------TAGAAAT--ACGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATTTCGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTA--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GGTTTCTT----GA-----------------------------------------TCGAAAT--CCGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACTTCGCCATATTTATAAATTTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTA--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
----------------------------------------------------------------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATGTAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAATCCGACGTTGGCGTG------------------------AACAGTAAAAAC----TTAA-GAAAAT-GAASizeHit CountTotal NormTotal
No Reads
droTak1
CA---GGT-----------GTCAGG----------------------------GCTTAA-TC--GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTGTATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAGTTCA-T---------------------------TAATGCAATAA----------------T----A-AAASizeHit CountTotal NormTotal
No Reads
droEug1
----------------------------------------------------------------GCGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGATAATGGTGTT-AAACTTA---------T------------AAATCT----T-AAACAAATT--AASizeHit CountTotal NormTotal
No Reads
dm3
----------------------------------------------------------------GTGTGTGCCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAG------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
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.........................................................................................................................................TACTGGCCTACTAAGTCCCAA...............................................................................................2117948.007948000019031000000020010000010001511653662612100000000000000000000007341300000000000000000262229300101060104860011298820052630410191247610007022701011504333742000000000000000010000000000000000000122167010532168328569392114791226000002270000000000000000000000000000000010000100000000000011000000240300000650000000000000000100000000000321316101003100000030151000100000000000012900000100000
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droSim2
----------------------------------------------------------------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAG------------------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...................................................................................TTGGGATTTTTTAGATCAGC......................................................................................................................................................20111546.00115461104515270445302000000000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAC..............................................................................................2216117.006117110001133587300000000000
.................................................................................GGTTGGGATTTTTTAGATCAGC......................................................................................................................................................2214547.00454742916601423000000000000
.........................................................................................................................................TACTGGCCTACTAAGTCCCA................................................................................................2011870.001870800129183200000000000
...................................................................................TTGGGATTTTTTAGATCAGCAG....................................................................................................................................................2211830.00183056620321122920241000000
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACAT............................................................................................2311539.001539200033150400000000000
...................................................................................TTGGGATTTTTTAGATCAGCA.....................................................................................................................................................2111426.00142638200114102900000000000
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACA.............................................................................................2211168.001168500034112900000000000
..........................................................................................................................................ACTGGCCTACTAAGTCCCAAC..............................................................................................211888.0088880002585500000000000
...................................................................................TTGGGATTTTTTAGATCA........................................................................................................................................................181771.00771270011872500000000000
.........................................................................................................................................TACTGGCCTACTAAGTCCC.................................................................................................191619.00619410001556300000000000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAA...............................................................................................211619.0061960001859500000000000
...................................................................................TTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................231494.00494332301215500010000000
...................................................................................TTGGGATTTTTTAGATCAG.......................................................................................................................................................191427.0042778100834000000000000
..........................................................................................................................................ACTGGCCTACTAAGTCCCA................................................................................................191419.004191000641200000000000
.........................................................................................................................................TACTGGCCTACTAAGTCC..................................................................................................181375.0037510000735800000000000
..........................................................................................................................................ACTGGCCTACTAAGTCCCAA...............................................................................................201288.002880001528200000000000
.................................................................................GGTTGGGATTTTTTAGAT..........................................................................................................................................................181253.002534000324600000000000
....................................................................................TGGGATTTTTTAGATCAGCAG....................................................................................................................................................211236.002360000522900110000000
....................................................................................TGGGATTTTTTAGATCAGCAGT...................................................................................................................................................221223.002230000221413120000000
.................................................................................GGTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................231190.0019058000312900000000000
..................................................................................GTTGGGATTTTTTAGATCAGC......................................................................................................................................................211173.0017313801013300000000000
..........................................................................................................................................ACTGGCCTACTAAGTCCC.................................................................................................181167.001675000415800000000000
............................................................................................................................................TGGCCTACTAAGTCCCAACAT............................................................................................211161.001610000915200000000000
...................................................................................TTGGGATTTTTTAGATCAGCT.....................................................................................................................................................211149.001491490000000000000000
....................................................................................TGGGATTTTTTAGATCAGCA.....................................................................................................................................................201143.001430000314000000000000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACA.............................................................................................231138.001380000513300000000000
.................................................................................GGTTGGGATTTTTTAGATCA........................................................................................................................................................201117.0011712000110400000000000
...................................................................................TTGGGATTTTTTAGATCAGCAGA...................................................................................................................................................231103.001031020000000000001000
.................................................................................GGTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................241101.00101500029400000000000
.................................................................................GGTTGGGATTTTTTAGATCAG.......................................................................................................................................................21199.00991400058000000000000
...................................................................................TTGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................24195.00955610013700000000000
.................................................................................GGTTGGGATTTTTTAGATC.........................................................................................................................................................19191.00913600015300001000000
....................................................................................TGGGATTTTTTAGATCAG.......................................................................................................................................................18184.0084000028200000000000
....................................................................................TGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................23176.0076000017500000000000
....................................................................................TGGGATTTTTTAGATCAGC......................................................................................................................................................19167.0067200016400000000000
...................................................................................TTGGGATTTTTTAGATCAGCAT....................................................................................................................................................22158.0058580000000000000000
............................................................................................................................................TGGCCTACTAAGTCCCAACA.............................................................................................20152.0052000005200000000000
...................................................................................TTGGGATTTTTTAGATCAGCAGC...................................................................................................................................................23142.0042420000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCAGG...................................................................................................................................................23126.0026260000000000000000
...................................................................................TTGGGATTTTTTAGATCAGT......................................................................................................................................................20121.0021210000000000000000
...................................................................................TTGGGATTTTTTAGATCAGG......................................................................................................................................................20119.0019190000000000000000
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACATA...........................................................................................24119.0019000001900000000000
...................................................................................TTGGGATTTTTTAGATCAGCTT....................................................................................................................................................22116.0016160000000000000000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACAT............................................................................................24113.0013000001300000000000
...................................................................................TTGGGATTTTTTAGATCAGCC.....................................................................................................................................................21112.0012120000000000000000
.................................................................................GGTTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................25112.0012200001000000000000
...................................................................................TTGGGATTTTTTAGATCAGCAC....................................................................................................................................................22110.0010100000000000000000
............................................................................................................................................TGGCCTACTAAGTCCCAACATA...........................................................................................2219.00900000900000000000
...................................................................................TTGGGATTTTTTAGATCAGCAA....................................................................................................................................................2219.00990000000000000000
............................................................................................................................................TGGCCTACTAAGTCCCAA...............................................................................................1819.00900000900000000000
............................................................................................................................................TGGCCTACTAAGTCCCAAC..............................................................................................1919.00900000900000000000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACT.............................................................................................2318.00880000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCG.....................................................................................................................................................2118.00880000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCAGTTT.................................................................................................................................................2517.00750000000000002000
.................................................................................GGTTGGGATTTTTTAGATCAGG......................................................................................................................................................2216.00660000000000000000
.....................................................................................GGGATTTTTTAGATCAGC......................................................................................................................................................1816.00660000000000000000
..................................................................................GTTGGGATTTTTTAGATCA........................................................................................................................................................1915.00500000500000000000
..................................................................................GTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................2315.00510000400000000000
.............................................................................................................................................GGCCTACTAAGTCCCAAC..............................................................................................1815.00500000500000000000
................................................................................TGGTTGGGATTTTTTAGATCAGC......................................................................................................................................................2315.00540001000000000000
..................................................................................GTTGGGATTTTTTAGATC.........................................................................................................................................................1814.00400000400000000000
..................................................................................GTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................2214.00420000200000000000
.....................................................................................GGGATTTTTTAGATCAGCAG....................................................................................................................................................2014.00400000400000000000
....................................................................................TGGGATTTTTTAGATCAGCAGTTAT................................................................................................................................................2514.00400000400000000000
...................................................................................TTGGGATTTTTTAGATCAGCAGAA..................................................................................................................................................2413.00330000000000000000
.................................................................................GGTTGGGATTTTTTAGATCAGA......................................................................................................................................................2213.00330000000000000000
...........................................................................................................................................CTGGCCTACTAAGTCCCAAC..............................................................................................2013.00300000300000000000
...................................................................................TTGGGATTTTTTAGATCAGCAGTA..................................................................................................................................................2413.00330000000000000000
.................................................................................GGTTGGGATTTTTTAGATCAGCAGA...................................................................................................................................................2513.00330000000000000000
.......................................................................................GATTTTTTAGATCAGCAG....................................................................................................................................................1812.00210000100000000000
...................................................................................TTGGGATTTTTTAGATCAGA......................................................................................................................................................2012.00220000000000000000
...............................................................................ATGGTTGGGATTTTTTAGATC.........................................................................................................................................................2112.00220000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCAAA...................................................................................................................................................2312.00210000000001000000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACATA...........................................................................................2512.00200000200000000000
.............................................................................................................................................GGCCTACTAAGTCCCAACAT............................................................................................2012.00200000200000000000
...................................................................................TTGGGATTTTTTAGATCAC.......................................................................................................................................................1912.00220000000000000000
........................................................................................ATTTTTTAGATCAGCAGT...................................................................................................................................................1812.00220000000000000000
.................................................................................GGTTGGGATTTTTTAGATCAGCG.....................................................................................................................................................2312.00220000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCAGTTA.................................................................................................................................................2512.00200000200000000000
.................................................................................GGTTGGGATTTTTTAGATCAGT......................................................................................................................................................2212.00220000000000000000
.............................................................................................................................................GGCCTACTAAGTCCCAACA.............................................................................................1912.00200000200000000000
.........................................................................................................................................TACTGGCCTACTAAGTCCCT................................................................................................2012.00220000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCATA...................................................................................................................................................2312.00220000000000000000
....................................................................................TGGGATTTTTTAGATCAGCAGTTA.................................................................................................................................................2412.00200000200000000000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACATAA..........................................................................................2612.00200000200000000000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACC.............................................................................................2312.00220000000000000000
........................................................................................................................................CTACTGGCCTACTAAGTCCCAAC..............................................................................................2312.00200000200000000000
...................................................................................TTGGGATTTTTTAGATCT........................................................................................................................................................1812.00220000000000000000
..............................................................................TATGGTTGGGATTTTTTAGATC.........................................................................................................................................................2212.00220000000000000000
.....................................................................................GGGATTTTTTAGATCAGCAGT...................................................................................................................................................2112.00200000200000000000
...................................................................................TTGGGATTTTTTAGATCAGCAGTC..................................................................................................................................................2412.00220000000000000000
.................................................................................GGTTGGGATTTTTTAGATCT........................................................................................................................................................2011.00110000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCAGACT.................................................................................................................................................2511.00110000000000000000
.................................................................................GGTTGGGATTTTTTAGATCAGCAGG...................................................................................................................................................2511.00110000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCAGAC..................................................................................................................................................2411.00110000000000000000
...........................................................................................................................................CTGGCCTACTAAGTCCCAA...............................................................................................1911.00100000100000000000
................................................................................TGGTTGGGATTTTTTAGATCAG.......................................................................................................................................................2211.00100000100000000000
.................................................................................GGTTGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................2611.00100000100000000000
...................................................................................TTGGGATTTTTTAGATCAGCACG...................................................................................................................................................2311.00110000000000000000
...........................................................................................................................................CTGGCCTACTAAGTCCCAACAT............................................................................................2211.00100000100000000000
............................................................................................................................................TGGCCTACTAAGTCCCAACATAA..........................................................................................2311.00100000100000000000
.................................................................................GGTTGGGATTTTTTAGATCAGCC.....................................................................................................................................................2311.00110000000000000000
...................................................................................TTGGGATTTTTTAGATCAGCAAAA..................................................................................................................................................2411.00110000000000000000
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACATAA..........................................................................................2511.00100000100000000000
.................................................................................GGTTGGGATTTTTTAGATCAGCAGAC..................................................................................................................................................2611.00110000000000000000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACGC............................................................................................2411.00110000000000000000
....................................................................................TGGGATTTTTTAGATCAGCAGTTATT...............................................................................................................................................2611.00100000100000000000
..................................................................................GTTGGGATTTTTTAGATCAGA......................................................................................................................................................2111.00110000000000000000
.........................................................................................................................................TACTGGCCTACTAAGTCCT.................................................................................................1911.00110000000000000000
..........................................................................................................................................ACTGGCCTACTAAGTCCCAATT.............................................................................................2211.00110000000000000000
.................................................................................GGTTGGGATTTTTTAGATCAGCAT....................................................................................................................................................2411.00110000000000000000
...................................................................................TTGGGATTTTTTAGATCTT.......................................................................................................................................................1980.13110000000000000000
droSec2
----------------------------------------------------------------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAG------------------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...................................................................................TTGGGATTTTTTAGATCAGC......................................................................................................................................................2011541.0015411121537
...................................................................................TTGGGATTTTTTAGATCAGCAG....................................................................................................................................................221924.00924725910
.................................................................................GGTTGGGATTTTTTAGATCAGC......................................................................................................................................................221538.00538000538
....................................................................................TGGGATTTTTTAGATCAGCAGT...................................................................................................................................................221393.00393001392
...................................................................................TTGGGATTTTTTAGATCAGCA.....................................................................................................................................................211275.00275101273
...................................................................................TTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................231228.00228001227
...................................................................................TTGGGATTTTTTAGATCAGCAGA...................................................................................................................................................231189.00189010188
....................................................................................TGGGATTTTTTAGATCAGCAG....................................................................................................................................................211186.00186010185
.........................................................................................................................................TACTGGCCTACTAAGTCCCA................................................................................................201147.00147400143
.................................................................................GGTTGGGATTTTTTAGATCAG.......................................................................................................................................................21174.007401073
.........................................................................................................................................TACTGGCCTACTAAGTCCCAA...............................................................................................21172.007250067
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAC..............................................................................................22171.007160065
.................................................................................GGTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................23161.006100061
..................................................................................GTTGGGATTTTTTAGATCAGC......................................................................................................................................................21149.004900049
....................................................................................TGGGATTTTTTAGATCAGCAGA...................................................................................................................................................22146.004600046
.................................................................................GGTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................24142.004210140
...................................................................................TTGGGATTTTTTAGATCAG.......................................................................................................................................................19141.004100041
.................................................................................GGTTGGGATTTTTTAGATCA........................................................................................................................................................20133.003300033
...................................................................................TTGGGATTTTTTAGATCAGCAT....................................................................................................................................................22131.003101030
....................................................................................TGGGATTTTTTAGATCAGC......................................................................................................................................................19130.003000030
.........................................................................................................................................TACTGGCCTACTAAGTCCC.................................................................................................19128.002800028
...................................................................................TTGGGATTTTTTAGATCA........................................................................................................................................................18117.001700017
....................................................................................TGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................23115.001500015
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACA.............................................................................................22111.00112009
....................................................................................TGGGATTTTTTAGATCAGCA.....................................................................................................................................................2019.0090108
..........................................................................................................................................ACTGGCCTACTAAGTCCCAAC..............................................................................................2118.0080008
..................................................................................GTTGGGATTTTTTAGATCAG.......................................................................................................................................................2018.0080008
...................................................................................TTGGGATTTTTTAGATCAGCAGC...................................................................................................................................................2318.0080008
...................................................................................TTGGGATTTTTTAGATCAGCAA....................................................................................................................................................2218.0080008
...................................................................................TTGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................2418.0080008
...................................................................................TTGGGATTTTTTAGATCAGA......................................................................................................................................................2017.0070007
.................................................................................GGTTGGGATTTTTTAGATCAGA......................................................................................................................................................2216.0060006
...................................................................................TTGGGATTTTTTAGATCAGCT.....................................................................................................................................................2116.0060006
.................................................................................GGTTGGGATTTTTTAGATC.........................................................................................................................................................1916.0060006
.................................................................................GGTTGGGATTTTTTAGATCAGCAA....................................................................................................................................................2416.0060006
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAT..............................................................................................2216.0060006
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACT.............................................................................................2314.0040004
...................................................................................TTGGGATTTTTTAGATCAGT......................................................................................................................................................2014.0040004
....................................................................................TGGGATTTTTTAGATCAGCAGC...................................................................................................................................................2214.0040004
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAA..............................................................................................2214.0042002
..........................................................................................................................................ACTGGCCTACTAAGTCCCA................................................................................................1913.0031002
....................................................................................TGGGATTTTTTAGATCAGCAGTTT.................................................................................................................................................2413.0030003
..........................................................................................................................................ACTGGCCTACTAAGTCCCAA...............................................................................................2013.0030003
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACAT............................................................................................2313.0030003
.........................................................................................................................................TACTGGCCTACTAAGTCCCAT...............................................................................................2113.0030003
...................................................................................TTGGGATTTTTTAGATCAGCAC....................................................................................................................................................2213.0030003
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACA.............................................................................................2313.0030003
.................................................................................GGTTGGGATTTTTTAGATCAGCAT....................................................................................................................................................2413.0030003
.................................................................................GGTTGGGATTTTTTAGATCAGCAGA...................................................................................................................................................2512.0020002
....................................................................................TGGGATTTTTTAGATCAGCAT....................................................................................................................................................2112.0020002
...................................................................................TTGGGATTTTTTAGATCAGCATA...................................................................................................................................................2312.0020002
..................................................................................GTTGGGATTTTTTAGATC.........................................................................................................................................................1812.0020002
.................................................................................GGTTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................2512.0020002
............................................................................................................................................TGGCCTACTAAGTCCCAACA.............................................................................................2012.0020002
.........................................................................................................................................TACTGGCCTACTAAGTCCCTT...............................................................................................2112.0020011
.................................................................................GGTTGGGATTTTTTAGATCAGT......................................................................................................................................................2212.0020002
...................................................................................TTGGGATTTTTTAGATCAGCAGG...................................................................................................................................................2312.0020002
...................................................................................TTGGGATTTTTTAGATCAGCG.....................................................................................................................................................2112.0020002
..........................................................................................................TATTGCTATATAGCCATATTTATAAAT........................................................................................................................2711.0010001
.........................................................................................................................................TACTGGCCTACTAAGTCCCT................................................................................................2011.0010001
...................................................................................TTGGGATTTTTTAGATCAGCAGTCT.................................................................................................................................................2511.0010001
...................................................................................TTGGGATTTTTTAGATCAGCAAAA..................................................................................................................................................2411.0010001
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACG.............................................................................................2311.0010001
...................................................................................TTGGGATTTTTTAGATCAGCAGTTTG................................................................................................................................................2611.0010001
.................................................................................GGTTGGGATTTTTTAGATCAGCG.....................................................................................................................................................2311.0010001
...................................................................................TTGGGATTTTTTAGATCAGCAGAA..................................................................................................................................................2411.0010001
...................................................................................TTGGGATTTTTTAGATCAGCAGAAC.................................................................................................................................................2511.0010001
.........................................................................................................TTATTGCTATATAGCCATATT...............................................................................................................................2111.0010001
.................................................................................GGTTGGGATTTTTTAGATCAGCAGC...................................................................................................................................................2511.0010001
...................................................................................TTGGGATTTTTTAGATCAGCAAA...................................................................................................................................................2311.0010001
.................................................................................GGTTGGGATTTTTTAGATCAGCT.....................................................................................................................................................2311.0010001
.................................................................................GGTTGGGATTTTTTAGATCAGCGA....................................................................................................................................................2411.0010001
.................................................................................GGTTGGGATTTTTTAGATCAGG......................................................................................................................................................2211.0010001
....................................................................................TGGGATTTTTTAGATCAGCAA....................................................................................................................................................2111.0010001
....................................................................................TGGGATTTTTTAGATCAGCAC....................................................................................................................................................2111.0010001
....................................................................................................................................................TAAGTCCCAACATAATGAGAGT...................................................................................2211.0010001
.........................................................................................................................................TACTGGCCTACTAAGTCCCATT..............................................................................................2221.0020002
..........................................................................................................................................ACTGGCCTACTAAGTCCTT................................................................................................1911.0010001
.................................................................................GGTTGGGATTTTTTAGATCAGTT.....................................................................................................................................................2311.0010001
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACT.............................................................................................2211.0010001
......................................................................................GGATTTTTTAGATCAGCA.....................................................................................................................................................1811.0010001
....................................................................................TGGGATTTTTTAGATCAGCAGTG..................................................................................................................................................2311.0010001
...................................................................................TTGGGATTTTTTAGATCAGG......................................................................................................................................................2011.0010001
.................................................................................GGTTGGGATTTTTTAGATCAGCAGAA..................................................................................................................................................2611.0010001
.........................................................................................................................................TACTGGCCTACTAAGTCC..................................................................................................1811.0010001
...................................................................................TTGGGATTTTTTAGATCAGCAGTCC.................................................................................................................................................2511.0010001
..................................................................................GTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................2211.0011000
...................................................................................TTGGGATTTTTTAGATCAGCAGTAT.................................................................................................................................................2511.0010001
....................................................................................TGGGATTTTTTAGATCAGCAGAA..................................................................................................................................................2311.0010001
.........................................................................................................................................TACTGGCCTACTAAGTCCCC................................................................................................2011.0010001
...................................................................................TTGGGATTTTTTAGATCAGTT.....................................................................................................................................................2120.5010001
..........................................................................................................................................ACTGGCCTACTAAGTCCCATT..............................................................................................2120.5010001
...................................................................................TTGGGATTTTTTAGATCACAG.....................................................................................................................................................2140.2510001
droYak3
----------------------------------------------------------------GTGAGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAG------------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...................................................................................TTGGGATTTTTTAGATCAGC......................................................................................................................................................2022212.004424366420021454220000
...................................................................................TTGGGATTTTTTAGATCAGCAG....................................................................................................................................................2221449.5028992800008091794160000
.................................................................................GGTTGGGATTTTTTAGATCAGC......................................................................................................................................................2221230.50246122760106312100000
....................................................................................TGGGATTTTTTAGATCAGCAGT...................................................................................................................................................222556.001112020032577780000
...................................................................................TTGGGATTTTTTAGATCAGCA.....................................................................................................................................................212358.5071718920013439200000
....................................................................................TGGGATTTTTTAGATCAGCAG....................................................................................................................................................212294.00588130019438730000
..................................................................................GTTGGGATTTTTTAGATCAGC......................................................................................................................................................212266.505333150006914540000
...................................................................................TTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................232183.003661410006615810000
.................................................................................GGTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................232104.50209413004811520000
.................................................................................GGTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................24269.0013813000358910000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAC..............................................................................................22264.5012962720243400000
.................................................................................GGTTGGGATTTTTTAGATCAG.......................................................................................................................................................21244.50896000305210000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAA...............................................................................................21239.50792600244700000
...................................................................................TTGGGATTTTTTAGATCAG.......................................................................................................................................................19228.50571400083500000
...................................................................................TTGGGATTTTTTAGATCAGCAGA...................................................................................................................................................23228.005611000133200000
.........................................................................................................................................TACTGGCCTACTAAGTCCCA................................................................................................20226.50537400172500000
...................................................................................TTGGGATTTTTTAGATCAGCT.....................................................................................................................................................21225.0050430001600000
...................................................................................TTGGGATTTTTTAGATCAGCAT....................................................................................................................................................22224.00483000103500000
....................................................................................TGGGATTTTTTAGATCAGCA.....................................................................................................................................................20216.50330000112200000
...................................................................................TTGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................24214.00281100061100000
....................................................................................TGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................23213.5027000052200000
...................................................................................TTGGGATTTTTTAGATCAGCAA....................................................................................................................................................2229.501930007900000
...................................................................................TTGGGATTTTTTAGATCA........................................................................................................................................................1829.001850004900000
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACAT............................................................................................2329.0018310041000000
...................................................................................TTGGGATTTTTTAGATCAGCAGC...................................................................................................................................................2329.0018140002200000
...................................................................................TTGGGATTTTTTAGATCAGCAGG...................................................................................................................................................2328.5017170000000000
.................................................................................GGTTGGGATTTTTTAGATC.........................................................................................................................................................1927.5015150000000000
....................................................................................TGGGATTTTTTAGATCAGC......................................................................................................................................................1927.0014000041000000
...................................................................................TTGGGATTTTTTAGATCAGCAC....................................................................................................................................................2227.001450000900000
.................................................................................GGTTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................2527.001410006700000
..................................................................................GTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................2326.501321003700000
....................................................................................TGGGATTTTTTAGATCAGCAGA...................................................................................................................................................2226.501300005710000
.................................................................................GGTTGGGATTTTTTAGATCA........................................................................................................................................................2026.001210005510000
..................................................................................GTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................2226.001250002500000
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACA.............................................................................................2225.501124003200000
...................................................................................TTGGGATTTTTTAGATCAGCG.....................................................................................................................................................2125.001070001200000
..................................................................................GTTGGGATTTTTTAGATCAG.......................................................................................................................................................2024.50900003510000
....................................................................................TGGGATTTTTTAGATCAGCAGC...................................................................................................................................................2224.50900002700000
...................................................................................TTGGGATTTTTTAGATCAGG......................................................................................................................................................2024.50990000000000
....................................................................................TGGGATTTTTTAGATCAGCAT....................................................................................................................................................2123.50700003400000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACT.............................................................................................2323.50731002100000
...................................................................................TTGGGATTTTTTAGATCAGCC.....................................................................................................................................................2123.00630000300000
.........................................................................................................................................TACTGGCCTACTAAGTCCC.................................................................................................1922.50511003000000
.................................................................................GGTTGGGATTTTTTAGATCAGCT.....................................................................................................................................................2322.00430000100000
.................................................................................GGTTGGGATTTTTTAGATCAGT......................................................................................................................................................2222.00430000100000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACA.............................................................................................2322.00400003100000
....................................................................................TGGGATTTTTTAGATCAGCAGG...................................................................................................................................................2222.00400002200000
...................................................................................TTGGGATTTTTTAGATCAGT......................................................................................................................................................2021.50310000200000
..........................................................................................................................................ACTGGCCTACTAAGTCCCAAC..............................................................................................2121.50300001200000
.................................................................................GGTTGGGATTTTTTAGATCAGG......................................................................................................................................................2221.50330000000000
....................................................................................TGGGATTTTTTAGATCAGCAGTA..................................................................................................................................................2321.50300000300000
.................................................................................GGTTGGGATTTTTTAGATCAGCAT....................................................................................................................................................2421.50300000300000
...................................................................................TTGGGATTTTTTAGATCAGA......................................................................................................................................................2021.50330000000000
....................................................................................TGGGATTTTTTAGATCAGCAC....................................................................................................................................................2121.50300000300000
.....................................................................................GGGATTTTTTAGATCAGC......................................................................................................................................................1821.50330000000000
...................................................................................TTGGGATTTTTTAGATCAGCTT....................................................................................................................................................2221.50310000200000
...................................................................................TTGGGATTTTTTAGATCAGCAGTTT.................................................................................................................................................2521.00210001000000
................................................................................TGGTTGGGATTTTTTAGATCAGC......................................................................................................................................................2321.00220000000000
..........................................................................................................TATTGCTATATAGCCATATTT..............................................................................................................................2121.00201001000000
.................................................................................GGTTGGGATTTTTTAGATCAGCG.....................................................................................................................................................2321.00220000000000
....................................................................................TGGGATTTTTTAGATCAG.......................................................................................................................................................1821.00200000200000
...................................................................................TTGGGATTTTTTAGATCAGCCT....................................................................................................................................................2221.00200001100000
...................................................................................TTGGGATTTTTTAGATCAC.......................................................................................................................................................1921.00210000100000
..................................................................................GTTGGGATTTTTTAGATCAGCTT....................................................................................................................................................2321.00220000000000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAA..............................................................................................2221.00200001100000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAT...............................................................................................2121.00210000100000
.........................................................................................................................................TACTGGCCTACTAAGTCCCG................................................................................................2021.00220000000000
..................................................................................GTTGGGATTTTTTAGATCAGCT.....................................................................................................................................................2221.00210000100000
.................................................................................GGTTGGGATTTTTTAGATCAGCAA....................................................................................................................................................2421.00200000200000
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAT..............................................................................................2221.00200001100000
.........................................................................................TTTTTTAGATCAGCAGT...................................................................................................................................................1721.00200000200000
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACT.............................................................................................2221.00220000000000
.................................................................................GGTTGGGATTTTTTAGATCAT.......................................................................................................................................................2121.00200000200000
.................................................................................GGTTGGGATTTTTTAGATCAGCC.....................................................................................................................................................2321.00200000200000
droEre2
----------------------------------------------------------------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGT------------------------TG-----AATAT-----------T-AAAA----A-AAASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...................................................................................TTGGGATTTTTTAGATCAGC......................................................................................................................................................2013907.0039072040301534870
...................................................................................TTGGGATTTTTTAGATCAGCAG....................................................................................................................................................2213613.00361341083107826630
....................................................................................TGGGATTTTTTAGATCAGCAGT...................................................................................................................................................2211044.001044601710358320
.................................................................................GGTTGGGATTTTTTAGATCAGC......................................................................................................................................................221960.009602048029080
...................................................................................TTGGGATTTTTTAGATCAGCA.....................................................................................................................................................211844.00844302410135870
....................................................................................TGGGATTTTTTAGATCAGCAG....................................................................................................................................................211844.00844130193096290
...................................................................................TTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................231382.0038210480103230
.................................................................................GGTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................231274.002741030042390
.........................................................................................................................................TACTGGCCTACTAAGTCCCA................................................................................................201201.0020110016001750
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAC..............................................................................................221181.0018151324011020
.................................................................................GGTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................241149.001491015021310
.........................................................................................................................................TACTGGCCTACTAAGTCCCAA...............................................................................................211122.001221802000840
.................................................................................GGTTGGGATTTTTTAGATCAG.......................................................................................................................................................211108.00108001302930
...................................................................................TTGGGATTTTTTAGATCAGCAGA...................................................................................................................................................23187.0087001101750
....................................................................................TGGGATTTTTTAGATCAGC......................................................................................................................................................19177.007700701690
...................................................................................TTGGGATTTTTTAGATCAG.......................................................................................................................................................19176.0076001901560
..................................................................................GTTGGGATTTTTTAGATCAGC......................................................................................................................................................21163.006300900540
....................................................................................TGGGATTTTTTAGATCAGCA.....................................................................................................................................................20133.003310801230
...................................................................................TTGGGATTTTTTAGATCAGCAT....................................................................................................................................................22133.0033001300200
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACA.............................................................................................22131.0031130001170
...................................................................................TTGGGATTTTTTAGATCAGCAA....................................................................................................................................................22131.003100401260
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACT.............................................................................................23123.002330100190
...................................................................................TTGGGATTTTTTAGATCA........................................................................................................................................................18122.002200100210
..................................................................................GTTGGGATTTTTTAGATCAGCAG....................................................................................................................................................23120.002000200180
....................................................................................TGGGATTTTTTAGATCAGCAGA...................................................................................................................................................22116.001600201130
.................................................................................GGTTGGGATTTTTTAGATCAGCAA....................................................................................................................................................24115.001500000150
...................................................................................TTGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................24114.001400301100
.........................................................................................................................................TACTGGCCTACTAAGTCCC.................................................................................................19114.001420100110
..................................................................................GTTGGGATTTTTTAGATCAGCA.....................................................................................................................................................22114.001400300110
..........................................................................................................................................ACTGGCCTACTAAGTCCCAACAT............................................................................................23113.00136010060
...................................................................................TTGGGATTTTTTAGATCAGA......................................................................................................................................................20112.001200000120
.................................................................................GGTTGGGATTTTTTAGATCA........................................................................................................................................................20112.00120030090
....................................................................................TGGGATTTTTTAGATCAGCAT....................................................................................................................................................21110.00100020080
..........................................................................................................................................ACTGGCCTACTAAGTCCCAAC..............................................................................................2119.0098000010
.................................................................................GGTTGGGATTTTTTAGATCAGA......................................................................................................................................................2219.0090000090
.........................................................................................................................................TACTGGCCTACTAAGTCCCAACA.............................................................................................2318.0080000080
....................................................................................TGGGATTTTTTAGATCAGCAGTT..................................................................................................................................................2318.0080010070
.................................................................................GGTTGGGATTTTTTAGATCAGCC.....................................................................................................................................................2317.0070000070
.........................................................................................................................................TACTGGCCTACTAAGTCC..................................................................................................1817.0071000060
...................................................................................TTGGGATTTTTTAGATCAGT......................................................................................................................................................2016.0060010050
.................................................................................GGTTGGGATTTTTTAGATCAGCAT....................................................................................................................................................2415.0050010040
..................................................................................GTTGGGATTTTTTAGATCAG.......................................................................................................................................................2015.0050000050
.........................................................................................................................................TACTGGCCTACTAAGTCCCAAA..............................................................................................2215.0050010040
............................................................................................................................................TGGCCTACTAAGTCCCAACATT...........................................................................................2214.0042000020
................................................................................TGGTTGGGATTTTTTAGATCAGC......................................................................................................................................................2314.0040010030
.................................................................................GGTTGGGATTTTTTAGATCAGCAGT...................................................................................................................................................2514.0040010030
...................................................................................TTGGGATTTTTTAGATCAGCC.....................................................................................................................................................2114.0040010030
.................................................................................GGTTGGGATTTTTTAGATCAGCT.....................................................................................................................................................2314.0040010030
.................................................................................GGTTGGGATTTTTTAGATC.........................................................................................................................................................1914.0040000040
...................................................................................TTGGGATTTTTTAGATCAGCT.....................................................................................................................................................2114.0040010030
.................................................................................GGTTGGGATTTTTTAGATCAGCG.....................................................................................................................................................2313.0030000030
...................................................................................TTGGGATTTTTTAGATCAGCAC....................................................................................................................................................2213.0030000030
....................................................................................TGGGATTTTTTAGATCAGCAGC...................................................................................................................................................2213.0030010020
.........................................................................................................................................TACTGGCCTACTAAGTCCCAT...............................................................................................2112.0020000020
.................................................................................GGTTGGGATTTTTTAGATCAGT......................................................................................................................................................2212.0020000020
....................................................................................TGGGATTTTTTAGATCAG.......................................................................................................................................................1812.0020000020
...................................................................................TTGGGATTTTTTAGATCAGCAGTA..................................................................................................................................................2412.0020000020
..................................................................................GTTGGGATTTTTTAGATCAGCAA....................................................................................................................................................2312.0020000020
..........................................................................................................................................ACTGGCCTACTAAGTCCCA................................................................................................1912.0020000020
...................................................................................TTGGGATTTTTTAGATCAGCAGTTT.................................................................................................................................................2512.0020000020
...................................................................................TTGGGATTTTTTAGATCAGCAGC...................................................................................................................................................2312.0020000020
..........................................................................................................TATTGCTACATAGCCATATTT..............................................................................................................................2112.0020000020
...................................................................................TTGGGATTTTTTAGATCAGCATA...................................................................................................................................................2312.0020000020
.................................................................................GGTTGGGATTTTTTAGATCAGCTT....................................................................................................................................................2411.0010000010
....................................................................................TGGGATTTTTTAGATCAGCAAA...................................................................................................................................................2211.0010000010
..........................................................................................................................................ACTGGCCTACTAAGTCCCAAT..............................................................................................2111.0010000010
...................................................................................TTGGGATTTTTTAGATCAGCACA...................................................................................................................................................2311.0010000010
..........................................................................................................TATTGCTACATAGCCATAT................................................................................................................................1911.0010000010
........................................................................................................................................CTACTGGCCTACTAAGTCCCA................................................................................................2111.0010010000
......................................................................................GGATTTTTTAGATCAGCAG....................................................................................................................................................1911.0010000010

Generated: 09/08/2015 at 07:32 PM