ID:

dmo_325

 Coordinate:

scaffold_6540:7696614-7696680 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.6 -29.2 -29.2

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(TA)nSimple_repeatSimple_repeat+

Sense Strand Reads

AACAAAACACAAAAAAAAAAATCGGTGATCAATTTTGTTTATATGTATATATATGTATGTATATAGATGCATATAACTTTTAAAATATGCATACTATATATGCATACATATACATATATCTATATCTATAAACACATTTCACTTTCATTTTTGTTATATAATTTAAT
***********************************....(((((((((((.((((((((((((...((((((((..........))))))))..)))))))))))).))))))))))).............************************************ 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
 V041
embryo
 V056
head
 V110
male body
..................................................ATATGTATGTATATAGATGCAT............................................................................................... 22 0 1 22.00 22 15 0 4 2 1
..................................................ATATGTATGTATATAGATGCATA.............................................................................................. 23 0 1 21.00 21 19 1 1 0 0
..................................................ATATGTATGTATATAGATGCA................................................................................................ 21 0 1 8.00 8 6 1 0 1 0
...................................................TATGTATGTATATAGATGCATA.............................................................................................. 22 0 1 6.00 6 5 0 1 0 0
..................................................ATATGTATGTATATAGATGCATAT............................................................................................. 24 0 1 3.00 3 3 0 0 0 0
...................................................TATGTATGTATATAGATGCATATA............................................................................................ 24 0 1 3.00 3 3 0 0 0 0
..........................................................................................ATACTATATATGCATACATATACATA................................................... 26 0 1 2.00 2 0 2 0 0 0
..................................................ATATGTATGTATATAGATGCATC.............................................................................................. 23 1 1 2.00 2 1 0 0 0 1
..................................................ATATGTATGTATATAGATGCATAA............................................................................................. 24 1 1 2.00 2 0 0 2 0 0
..................................................ATCTGTATGTATATAGATGCAT............................................................................................... 22 1 1 2.00 2 2 0 0 0 0
...................................................TATGTATGTATATAGATGCAT............................................................................................... 21 0 2 1.50 3 2 0 1 0 0
..................................................AGATGTATGTATATAGATGCAT............................................................................................... 22 1 3 1.33 4 4 0 0 0 0
.....................................................TGTATGTATATAGATGCATATA............................................................................................ 22 0 1 1.00 1 1 0 0 0 0
..................................................AGATGTATGTATATAGATGCATAT............................................................................................. 24 1 1 1.00 1 1 0 0 0 0
.......................................................................................TGCATACTATATATGCATAC............................................................ 20 0 1 1.00 1 1 0 0 0 0
..................................................ATATGGATGTATATAGATGCATATA............................................................................................ 25 1 1 1.00 1 1 0 0 0 0
........................................................................................................................................TTTCACTTTCATTTTTGTT............ 19 0 1 1.00 1 0 1 0 0 0
..................................................AGATGTATGTATATAGATGCATATA............................................................................................ 25 1 1 1.00 1 1 0 0 0 0
..................................................ATAGGTATGTATATAGATGCA................................................................................................ 21 1 1 1.00 1 1 0 0 0 0
..................................................ATATGTATGTATATAGATGCATATA............................................................................................ 25 0 1 1.00 1 1 0 0 0 0
..........................................................................................ATACTATATATGCATACATATACATAT.................................................. 27 0 1 1.00 1 0 1 0 0 0
..................................................ATACGTATGTATATAGATGCAT............................................................................................... 22 1 1 1.00 1 1 0 0 0 0
........................................................................ATAACTTTTAAAATATGCA............................................................................ 19 0 1 1.00 1 0 1 0 0 0
...............................................................................................................................ATAAACACATTTCACTTTCATTTTT............... 25 0 1 1.00 1 0 1 0 0 0
.......................................................................................................................................ATTTCACTTTCATTTTTGTTAT.......... 22 0 1 1.00 1 0 1 0 0 0
....................................................ATGTATGTATATAGATGCATA.............................................................................................. 21 0 1 1.00 1 1 0 0 0 0
..................................................ATATGTATGTATATAGATGC................................................................................................. 20 0 2 1.00 2 2 0 0 0 0
...............................................................................................................................ATAAACACATTTCACTTTCATTTTTGTT............ 28 0 1 1.00 1 0 1 0 0 0
...............................ATTTTGTTTATATGTATATAT................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
......................................................................................................................TCTATATCTATAAACACATTT............................ 21 0 1 1.00 1 0 1 0 0 0
..........................................................................................ATACTGTATATGCATACATATACAT.................................................... 25 1 1 1.00 1 0 1 0 0 0
..................................................AGATGTATGTATATAGATGCATA.............................................................................................. 23 1 2 1.00 2 2 0 0 0 0
........................................................................ATAACTTTTAAAATATGCATACTATAT.................................................................... 27 0 1 1.00 1 0 1 0 0 0
.ACAAAACACAAAAAAAAAAATCGGT............................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0
.....................................................................................................................ATCTATATCTATAAACACATTTCACTTT...................... 28 0 1 1.00 1 0 1 0 0 0
.......CACAAAAAAAAAAATCGGT............................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0
........................................................................ATAACTTTTAAAATATGCATACTAT...................................................................... 25 0 1 1.00 1 0 1 0 0 0
.........................................................................TAACTTTTAAAATATGCATACTAT...................................................................... 24 0 1 1.00 1 0 1 0 0 0
.....................................................................................TATGCATACTATATATGCATAC............................................................ 22 0 1 1.00 1 1 0 0 0 0
..................................................ATATGTATGTATATAGATGCAC............................................................................................... 22 1 3 0.67 2 2 0 0 0 0
..................................................AGATGTATGTATATAGATGCA................................................................................................ 21 1 3 0.67 2 2 0 0 0 0
..................................................ATATGTATGTATATAGATGCGTA.............................................................................................. 23 1 2 0.50 1 1 0 0 0 0
......................................................................................................................................CATTTCACTTTCATTTTTG.............. 19 0 2 0.50 1 0 1 0 0 0
..................................................ATATGTATGTATATAGGTGCAT............................................................................................... 22 1 2 0.50 1 1 0 0 0 0
...................................................TATGTATGTATATAGATGC................................................................................................. 19 0 3 0.33 1 0 1 0 0 0
.................................................CCTATGTATGTATATAGATGCATATA............................................................................................ 26 2 4 0.25 1 1 0 0 0 0
...................................................TATGTATGTATATAGATGCAC............................................................................................... 21 1 4 0.25 1 1 0 0 0 0
..................................................AGATGTATGTATATAGATGCAC............................................................................................... 22 2 8 0.25 2 2 0 0 0 0
.................................................CATATGTATGTATATAGATGCATATA............................................................................................ 26 1 4 0.25 1 1 0 0 0 0
...................................................TGTGTATGTATATAGATGCATATA............................................................................................ 24 1 5 0.20 1 1 0 0 0 0
...AAAACACAAAAAAAAAAA.................................................................................................................................................. 18 0 20 0.10 2 0 2 0 0 0
..................................................ATATGTATGTATATGGATGCATA.............................................................................................. 23 1 10 0.10 1 1 0 0 0 0
.............................................................................................................ATACATATATCTATATCTAT...................................... 20 0 11 0.09 1 0 1 0 0 0
.......................................................................................................ATACATATACATATATCTAT............................................ 20 0 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TTGTTTTGTGTTTTTTTTTTTAGCCACTAGTTAAAACAAATATACATATATATACATACATATATCTACGTATATTGAAAATTTTATACGTATGATATATACGTATGTATATGTATATAGATATAGATATTTGTGTAAAGTGAAAGTAAAAACAATATATTAAATTA
************************************....(((((((((((.((((((((((((...((((((((..........))))))))..)))))))))))).))))))))))).............*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:7696564-7696730 + dmo_325 AACAAAACACAAAAAAAA--AAATC-------G----GTGATCAAT--TTTGTTT---ATATGTATATATATGTATG--TA------TATAGA--TGC------------------------------------------------------------ATATAACTTTT-----AAAATATGCAT----A-------CTATATAT------------GCATACATATACATATATCTAT------AT-------------CT-------------ATA----AACA--CA-------------------TTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTCATTTTTGTTATATAA----------------TTTAAT-
droVir3 scaffold_12970:3064167-3064319 + ATATAACATAAAAAAAAA----ATA-------TA----------------TAT--ATA-TAT----TTATATG--------TATATATATATA--TAT---------------------ATATATATATATATAATTTAT-------------------------------------------AT----A---ATGA---TAAAA------------CTATGTGT-----------------------------------------------------------------TC--------------------------------------------------------------------------------------------------------------------------ACCTTAGAAAATGTATATTTTTGTAATGCTCTTCATTGTTATTATTTTA----------------------------------------------------------------TAA----------------TTT--A-
droGri2 scaffold_14830:1284998-1285127 + TATTT-----------------------------------------------------ATATATATATATATGTATA--TA------TATATA--TGC------------------------------------------------------------ATATATATTTC-----AAATTATAAATA--ATTA--------TAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTCTGCATATTTGCTATATTTTATAAAAATATTTGTTATTCTATATGAAT-----TT-GTA------------------------------------------------------------------G----------------TTTTAT-
droWil2 scf2_1100000004909:5760425-5760584 - AACAACAACAAAAAAAAA--AAACA-------AA----------------TAT--ATA-TAT----ATATATA--------TACATATATAAA--TAT---------------------ATGTACATATATACAATATGC-------------------------------------------AT----A---TATA---CGTAT------------ATATGTATATATATATATACAT------AT-------------AT-------------ATA----TATA--TA-----------------AATT--------------------------------------------------------------------------AAAAGC-GAAA------------------TT-----------------------------------------------TTTTC--ACACTT---------------------------------------------------TAG----------------CTTAAT-
dp5 2:8368838-8368978 + CGGTCCAGGAATCAAACAATCAC--TAAAT-------------------------------------------------CA------ATCAAA--CGT------------------------------------------------------------AT----------------------------------------------------------------------------------------------------------------------------------TGATGCTCGAAGACGAG------------------------------CATA------------------------------------------AACACGGT-GATC------------------CT-----------------------------------------------TTTTT--ATATTTTACCCCTAACTATATTATACGAGAATCTA---CACTTTCTTTTTTGTTATATA---A----------------TAT-
droPer2 scaffold_3218:2550-2678 - CAATCT--------------------------------------------TATTT---ATATATATGTATATATATG--TA------TATATA--TGT------------------------------------------------------------ATATATATGT-----------ATATATA--TGTAT------ATA---------------------------------------------TATGTATATATATGTA-TATATATGTATATATATGTATATA------------------------------TATGT---------ATATA------------------------------------------------T-----------------------------------------------------------------------AT-ATA------------------------------------------------------------------ATTG----------------TAT-
droAna3 scaffold_12911:3687266-3687433 + AGTAAAAAAAAAGGAAAA--CCT-------ACCATTACTG-------------------T--------------------A------CGATGC--TA-------------------------------------------------------------------------------------------------------AG---------------------------------------------------------------------------------------------------------------------------------------TAAATTTGTTAATATTATTATACACTTCTTTATCAGTCTTTTTTCGAACACGGT-GATT------------------TT-----------------------------------------------TTTTT--ACATTTTACCTTTATCTAATATATACACGAAAGTA---ATTCTTCTTTTTTGTTAAATA---A----------------TAT-
droBip1 scf7180000394930:3782-3937 - AGCAAACAAATTAAAAAT--GGT-------AT---------TTTACGATTTATTT---GTATATATATATATATATA--TA------TATATA--CGC--------------------------------TATAATATAT-------------------------------------------AT----A-------ATATATAT------------ATATATATATATATATATACAT------AT-------------AT-------------ATA----TATA--TA-----------------CGCTAT----------ATACGCTTTATTTT------------------------------------------------T-----------------------------------------------------------------------AT-GTA------------------------------------------------------------------C----------------CATATT-
droKik1 scf7180000301930:43644-43792 + GTGCACAATTTTGGAAAT--GGC----------------------------------------------------------TTTATATACAAA--TATATAATATA-TATTATAAAAATATTATTATAT------TACACATATATATATATATATATA-----------------------TAT----A--------TATATAT------------GTATACATATAT--CT----TAA-----------------------------------------------------------------------------------------------TA------------------------------------------------T---ATAAAAATCTCCTGTCACTAT-----------------------------------------------G----------------------------------------------------------------------------------------TTTGTT-
droFic1 scf7180000454163:1622-1735 + ATGTATACAT------------------------------------------------------------ATGTATG--TATATATATACATG--TAT-------------------------------------------------------------------------------------AT----G-------CTATATAT------------ATATATATATATATATATATAT------AT-------------AT-------------ATA----TATA--TA-------------------TTTGATCTCTATATATA---------TA------------------------------------------------T-----------------------------------T-TATATAT---------------------------A-------------------------------------------------------------------------TA----------------TAT-
droEle1 scf7180000491092:25343-25474 - ATATGTATAT------------------------------------------------ATAT----GTATATA--------TATATATATAAA--TAT---------------------ATATATATATATATAAAATAT-------------------------------------------AT----A---AATA---TATAT------------ATATATATATAT-------------------------------TTATTATATATATATAAATATATACATA------------------------------AATATATA---------TA------------------------------------------------T-----------------------------------------------------------------------AT-ATA------------------------------------------------------------------AATA----------------TAT-
droRho1 scf7180000779322:287480-287552 + CGGTGATCCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------------------TTTTT--ATATTATACCTTTACATATATT--ACACG-ATCTA---ATTCTTCTTTTTTGTTACGTA---A----------------TAT-
droBia1 scf7180000301760:4149624-4149785 + ATTATTAGTCAAAATTAT--TTA--TTATATT--------------------------A--TATACA-ATACATGTG--CA------TATACAGACAT------------------------------------------------------------ATATAATTCTA-----TATATGTGTAT----A-------CTGTACAG------------GCATACATATAT--AG----GCAAATGTGA-------------------------------------------AAATGCCCAAAG-----------------CCAAATACATTTCGAAAC------------------------------------------------TAC---------------------------------------------------------------------GC-TGT--------------------------------------------------------TTAT----TAA----------------TTTA-A-
droTak1 scf7180000415712:487769-487908 - ATCAATCGATCAAGCAAT--CAA--TCAATCAGC-----T-------------------T--------------------C------GAAGGC--AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---------------------------------------------AGATTCAGTTCGA-------------------------------GTACCACGGT-GATC------------------CCC----------------------------------------------ATTTTAAATATTATACCTTTACATATAAT--GCGCA-ATCTAATTCTTCTTCTTTTTTGTTACATA---A----------------TAT-
droEug1 scf7180000406038:807-959 - TATAAAATATAAAAATAT--AAA--------------------------------------AATATA--------AAAATA------TAAAAA--TAT-------AAAAATATAAAAATATAAAAATAT-AAAAATATAA-------------------------------------------AA----A--------TATAAAA------------ATATAAAA--AT--AT----AAAAATATAA-------------------------------------------AAATAGAAAAAA-----TATAAA----------AAATATAAAAAATA------------------------------------------------T-----------------------------------------------------------------------AA-AAA------------------------------------------------------------------A----------------TATAAA-
dm3 chrUextra:10704814-10704937 - TGTAT-----------------------------------------------------ATATGTATATATGTATATA--TG------TATATA--TGT------------------------------------------------------------ATATATGT--A-----TATA----------------------TGTATATATGTATATATGTATATATGTAT--AT----ATG-----------------------------------------------------------------------------------------------TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTATT------------ATTATTGT-TTA--------------------------------------------------------TTAT----TAA----------------TTTAAT-
droSim2 2r:11683565-11683704 + TATAT-----------------------------------------------------ATATATATATATATATATA--TA------TATATA--TAT------------------------------------------------------------ATATATATTTCTGCCTG--ATATATATA--TATAT------ATA---------------------------------------------TATATATATATATATA-TATATATATATATATATATATATA------------------------------TATTTATA---------TA------------------------------------------------T-----------------------------------------------------------------------AT-AAG------------------------------------------------------------------ATTATATTCACACGC---------
droSec2 scaffold_64:1753-1883 + ATATAGTATAT-----------------------------------------------ATATATACATATATA--TATATA------TATATA--TAT-------A--------------------TATATATAAAATAT-------------------------------------------AT----A-------GTATATAT------------ATATACATATATATATATATAT------AT-------------AT-------------ATATATATATATA------------------------------TATATATA--TAGTATATA------------------------------------------------T-----------------------------------------------------------------------A----------------------------------------------------------------------------------------TATAGT-
droYak3 3R:486758-486945 + ATCAGAAAGTTCACGAAA--CCA-------CAGATTATTAAACATT--AATATCT---ATATATATATATATATATA--TA------TATATA--TAT------------------------------------------------------------ATGTTTGCTTTTAATTA--ATATGTATA--TATAT------ATA---------------------------------------------TATATATACATATATA-AATATATATTTATGTATAAATATA------------------------------TATACATA---------TA------------------------------------------------T------------------------------------------------TTATA------------------------------------------------------------------------------------------AATATATATATGTGTAACTTAATA
droEre2 scaffold_4784:25734448-25734604 - AATATCACGCGATAGAAA--AGAACGAAAA-----------TGTAT---GTGTTT---GTATGTATATATATGTATG--TA------TATATA--TGT------------------------------------------------------------ATATATATAT-----------ATGTATGTATATA------TATGTAT------------GTATATAT-----------------------------------ATG-TATGTATATATATGTATGTATATA------------------------------TATGT---------ATGTA------------------------------------------------T-----------------------------------------------------------------------GT-ATG-----------------------------------------------------------TT--------A----------------TATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AACAAAACACAAAAAAAA--AAATC-------G----GTGATCAAT--TTTGTTT---ATATGTATATATATGTATG--TA------TATAGA--TGC------------------------------------------------------------ATATAACTTTT-----AAAATATGCAT----A-------CTATATAT------------GCATACATATACATATATCTAT------AT-------------CT-------------ATA----AACA--CA-------------------TTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTCATTTTTGTTATATAA----------------TTTAAT-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................ATATGTATG--TA------TATAGA--TGC------------------------------------------------------------AT.........................................................................................................................................................................................................................................................................................................................................................................................................22122.00220402151
....................................................................ATATGTATG--TA------TATAGA--TGC------------------------------------------------------------ATA........................................................................................................................................................................................................................................................................................................................................................................................................23121.00211100190
....................................................................ATATGTATG--TA------TATAGA--TGC------------------------------------------------------------A..........................................................................................................................................................................................................................................................................................................................................................................................................2118.008100160
.....................................................................TATGTATG--TA------TATAGA--TGC------------------------------------------------------------ATA........................................................................................................................................................................................................................................................................................................................................................................................................2216.006010050
....................................................................ATATGTATG--TA------TATAGA--TGC------------------------------------------------------------ATAT.......................................................................................................................................................................................................................................................................................................................................................................................................2413.003000030
.....................................................................TATGTATG--TA------TATAGA--TGC------------------------------------------------------------ATATA......................................................................................................................................................................................................................................................................................................................................................................................................2413.003000030
.......................................................................................................................................................................................AT----A-------CTATATAT------------GCATACATATACATA.................................................................................................................................................................................................................................................................................................................................2612.002200000
....................................................................ATATGTATG--TA------TATAGA--TGC------------------------------------------------------------ATC........................................................................................................................................................................................................................................................................................................................................................................................................2312.002000011
....................................................................ATATGTATG--TA------TATAGA--TGC------------------------------------------------------------ATAA.......................................................................................................................................................................................................................................................................................................................................................................................................2412.002020000
.....................................................................TATGTATG--TA------TATAGA--TGC------------------------------------------------------------AT.........................................................................................................................................................................................................................................................................................................................................................................................................2121.503010020
.......................................................................TGTATG--TA------TATAGA--TGC------------------------------------------------------------ATATA......................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
....................................................................................................................................................................................TGCAT----A-------CTATATAT------------GCATAC..........................................................................................................................................................................................................................................................................................................................................2011.001000010
.....................................................................................................................................................................................................................................................................................................................TTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTCATTTTTGTT.............................1911.001100000
....................................................................ATATGTATG--TA------TATAGA--TGC------------------------------------------------------------ATATA......................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
.......................................................................................................................................................................................AT----A-------CTATATAT------------GCATACATATACATAT................................................................................................................................................................................................................................................................................................................................2711.001100000
................................................................................................................................................................ATAACTTTT-----AAAATATGCA.................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................................................................................................ATA----AACA--CA-------------------TTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTCATTTTT................................2511.001100000
.................................................................................................................................................................................................................................................................................................A-------------------TTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTCATTTTTGTTAT...........................2211.001100000
......................................................................ATGTATG--TA------TATAGA--TGC------------------------------------------------------------ATA........................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
....................................................................ATATGTATG--TA------TATAGA--TGC------------------------------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................2021.002000020
...................................................................................................................................................................................................................................................................................ATA----AACA--CA-------------------TTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTCATTTTTGTT.............................2811.001100000
............................................AT--TTTGTTT---ATATGTATATAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..........................................................................................................................................................................................................................................TCTAT------AT-------------CT-------------ATA----AACA--CA-------------------TTT.................................................................................................................................................................................................................................................2111.001100000
................................................................................................................................................................ATAACTTTT-----AAAATATGCAT----A-------CTATAT..............................................................................................................................................................................................................................................................................................................................................................2711.001100000
.ACAAAACACAAAAAAAA--AAATC-------G----GT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.........................................................................................................................................................................................................................................ATCTAT------AT-------------CT-------------ATA----AACA--CA-------------------TTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTT.......................................2811.001100000
.......CACAAAAAAAA--AAATC-------G----GT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
................................................................................................................................................................ATAACTTTT-----AAAATATGCAT----A-------CTAT................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.................................................................................................................................................................TAACTTTT-----AAAATATGCAT----A-------CTAT................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..................................................................................................................................................................................TATGCAT----A-------CTATATAT------------GCATAC..........................................................................................................................................................................................................................................................................................................................................2211.001000010
....................................................................ATATGTATG--TA------TATAGA--TGC------------------------------------------------------------AC.........................................................................................................................................................................................................................................................................................................................................................................................................2230.672000020
................................................................................................................................................................................................................................................................................................CA-------------------TTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTCATTTTTG...............................1920.501100000
.....................................................................TATGTATG--TA------TATAGA--TGC------------------------------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................1930.331100000
.....................................................................TATGTATG--TA------TATAGA--TGC------------------------------------------------------------AC.........................................................................................................................................................................................................................................................................................................................................................................................................2140.251000010
...AAAACACAAAAAAAA--AAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.102200000
.................................................................................................................................................................................................................................ATACATATATCTAT------AT-------------CT-------------AT....................................................................................................................................................................................................................................................................................20110.091100000
...........................................................................................................................................................................................................................ATACATATACATATATCTAT------....................................................................................................................................................................................................................................................................................................................20200.051100000
droVir3
ATATAACATAAAAAAAAA----ATA-------TA----------------TAT--ATA-TAT----TTATATG--------TATATATATATA--TAT---------------------ATATATATATATATAATTTAT-------------------------------------------AT----A---ATGA---TAAAA------------CTATGTGT-----------------------------------------------------------------TC--------------------------------------------------------------------------------------------------------------------------ACCTTAGAAAATGTATATTTTTGTAATGCTCTTCATTGTTATTATTTTA----------------------------------------------------------------TAA----------------TTT--A-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................TA-TAT----TTATATG--------TATATATATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................23190.051000000000000000000100000000000000000000000000000000000000000000
.......ATAAAAAAAAA----ATA-------TA----------------TAT--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000100000000000000000000000000000000000000000000000
droGri2
TATTT-----------------------------------------------------ATATATATATATATGTATA--TA------TATATA--TGC------------------------------------------------------------ATATATATTTC-----AAATTATAAATA--ATTA--------TAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTCTGCATATTTGCTATATTTTATAAAAATATTTGTTATTCTATATGAAT-----TT-GTA------------------------------------------------------------------G----------------TTTTAT-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AACAACAACAAAAAAAAA--AAACA-------AA----------------TAT--ATA-TAT----ATATATA--------TACATATATAAA--TAT---------------------ATGTACATATATACAATATGC-------------------------------------------AT----A---TATA---CGTAT------------ATATGTATATATATATATACAT------AT-------------AT-------------ATA----TATA--TA-----------------AATT--------------------------------------------------------------------------AAAAGC-GAAA------------------TT-----------------------------------------------TTTTC--ACACTT---------------------------------------------------TAG----------------CTTAAT-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
CGGTCCAGGAATCAAACAATCAC--TAAAT-------------------------------------------------CA------ATCAAA--CGT------------------------------------------------------------AT----------------------------------------------------------------------------------------------------------------------------------TGATGCTCGAAGACGAG------------------------------CATA------------------------------------------AACACGGT-GATC------------------CT-----------------------------------------------TTTTT--ATATTTTACCCCTAACTATATTATACGAGAATCTA---CACTTTCTTTTTTGTTATATA---A----------------TAT-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................CTCGAAGACGAG------------------------------CATA------------------------------------------AACACGGT-GA...............................................................................................................................................................2619.0090000000900
.........................................................................................................................................................................................................................................................................................................CGAAGACGAG------------------------------CATA------------------------------------------AACACGGT-.................................................................................................................................................................2216.0060320100000
.........................................................................................CAAA--CGT------------------------------------------------------------AT----------------------------------------------------------------------------------------------------------------------------------TGATGCTCGAAGACGAG------------------------------C.......................................................................................................................................................................................................................2714.0040210100000
.......................................................................................................................................................................................................................................................................................................CTCGAAGACGAG------------------------------CATA------------------------------------------AACACGGT-.................................................................................................................................................................2414.0040110000002
..........................................................................................................................................................................................................................................................................................................GAAGACGAG------------------------------CATA------------------------------------------AACACGGT-.................................................................................................................................................................2112.0020100001000
................................................................................................GT------------------------------------------------------------AT----------------------------------------------------------------------------------------------------------------------------------TGATGCTCGAAGACGA.......................................................................................................................................................................................................................................................2012.0020200000000
.......................................................................................................................................................................................................................................................................................................CTCGAAGACGAG------------------------------CATA------------------------------------------AACACGG...................................................................................................................................................................2311.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACGAGAATCTA---CACTT........................................1911.0010000100000
............................................................................................A--CGT------------------------------------------------------------AT----------------------------------------------------------------------------------------------------------------------------------TGATGCTCGAAGACGA.......................................................................................................................................................................................................................................................2211.0010000000010
.....................................................................................................................................................................................................................................................................................................TGCTCGAAGACGAG------------------------------CATA------------------------------------------AACACGG...................................................................................................................................................................2511.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................GATC------------------CT-----------------------------------------------TTTTT--ATATTTTACCCCTAACT..................................................................2811.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTTACCCCTAACTATATTATAC.........................................................2611.0010010000000
........................................................................................TCAAA--CGT------------------------------------------------------------AT----------------------------------------------------------------------------------------------------------------------------------TGATGCTCGAAGACG........................................................................................................................................................................................................................................................2511.0010100000000
..............................................................................................................................................................................................................................................................................................................ACGAG------------------------------CATA------------------------------------------AACACGGT-GAT..............................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................CGAAGACGAG------------------------------CATA------------------------------------------AACACGGC-.................................................................................................................................................................2211.0010010000000
............CAAACAATCAC--TAAAT-------------------------------------------------CA------ATCAAA--CG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
.......................................................................................ATCAAA--CGT------------------------------------------------------------AT----------------------------------------------------------------------------------------------------------------------------------TGATGCTCGAAGACGA.......................................................................................................................................................................................................................................................2711.0010000000001
............................................................................................................................................................................................................................................................................................................AGACGAG------------------------------CATA------------------------------------------AACACGGC-.................................................................................................................................................................1911.0010010000000
.........................................................................................................................................................................................................................................................................................................CGAAGACGAG------------------------------CATA------------------------------------------AACACGGT-GATC------------------C..........................................................................................................................................2711.0010100000000
..........................................................................................AAA--CGT------------------------------------------------------------AT----------------------------------------------------------------------------------------------------------------------------------TGATGCTCGAAGACGAG------------------------------........................................................................................................................................................................................................................2511.0010000100000
............................................................................................................................................................................................................................................................................................................AGACGAG------------------------------CATA------------------------------------------AACACGGT-GATC------------------...........................................................................................................................................2311.0010100000000
.........................................................................................CAAA--CGT------------------------------------------------------------AT----------------------------------------------------------------------------------------------------------------------------------TGATGCTCGAA............................................................................................................................................................................................................................................................2011.0010000001000
.........................................................................................................................................................................................................................................................................................................CGAAGACGAG------------------------------CATA------------------------------------------AACACGGT-G................................................................................................................................................................2311.0010010000000
..GTCCAGGAATCAAACAATCAC--TAAAT-------------------------------------------------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
................................................................................................GT------------------------------------------------------------AT----------------------------------------------------------------------------------------------------------------------------------TGATGCTCGAAGACGAG------------------------------........................................................................................................................................................................................................................2111.0010000100000
.........................................................................................................................................................................................................................................................................................................CGAAGACGAG------------------------------CATA------------------------------------------AACAC.....................................................................................................................................................................1911.0010100000000
.............................................................................................................................................................................................................................................................................................................GACGAG------------------------------CATA------------------------------------------AACACGGT-GATC------------------C..........................................................................................................................................2311.0010000010000
..........ATCAAACAATCAC--TAAAT-------------------------------------------------CA------ATCAAA--CGT------------------------------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................2911.0010010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTA---CACTTTCTTTTTTGT..............................1911.0010100000000
................................................................................................GT------------------------------------------------------------AT----------------------------------------------------------------------------------------------------------------------------------TGATGCTCGAAGACGAG------------------------------C.......................................................................................................................................................................................................................2211.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--ATATTTTACCCCTAACTAT................................................................2011.0010100000000
..............................................................................................................................................................AT----------------------------------------------------------------------------------------------------------------------------------TGATGCTCGAAGACGAG------------------------------........................................................................................................................................................................................................................1911.0010100000000
..................................................................................................................................................................................................................................................................................................................................................ATA------------------------------------------AACACGGT-GATC------------------CT-----------------------------------------------TTTTT--...................................................................................2211.0010010000000
droPer2
CAATCT--------------------------------------------TATTT---ATATATATGTATATATATG--TA------TATATA--TGT------------------------------------------------------------ATATATATGT-----------ATATATA--TGTAT------ATA---------------------------------------------TATGTATATATATGTA-TATATATGTATATATATGTATATA------------------------------TATGT---------ATATA------------------------------------------------T-----------------------------------------------------------------------AT-ATA------------------------------------------------------------------ATTG----------------TAT-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AGTAAAAAAAAAGGAAAA--CCT-------ACCATTACTG-------------------T--------------------A------CGATGC--TA-------------------------------------------------------------------------------------------------------AG---------------------------------------------------------------------------------------------------------------------------------------TAAATTTGTTAATATTATTATACACTTCTTTATCAGTCTTTTTTCGAACACGGT-GATT------------------TT-----------------------------------------------TTTTT--ACATTTTACCTTTATCTAATATATACACGAAAGTA---ATTCTTCTTTTTTGTTAAATA---A----------------TAT-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................ATTACTG-------------------T--------------------A------CGATGC--TA-------------------------------------------------------------------------------------------------------AG---------------------------------------------------------------------------------------------------------------------------------------T.......................................................................................................................................................................................................................2016.006012030
..................................TTACTG-------------------T--------------------A------CGATGC--TA-------------------------------------------------------------------------------------------------------AG---------------------------------------------------------------------------------------------------------------------------------------T.......................................................................................................................................................................................................................1913.003010011
....................................................................................................................................................................................................................................................................................................................................................................................GTCTTTTTTCGAACACGGT-.................................................................................................................................................................1913.003020010
...................................................................................................................................................................................................................................................................................................................................................................................AGTCTTTTTTCGAACACGGT-.................................................................................................................................................................2012.002001010
.........................................................................................................................................................................................................G---------------------------------------------------------------------------------------------------------------------------------------TAAATTTGTTAATATTATTATA..................................................................................................................................................................................................2311.001010000
.......................................G-------------------T--------------------A------CGATGC--TA-------------------------------------------------------------------------------------------------------AG---------------------------------------------------------------------------------------------------------------------------------------TAAATT..................................................................................................................................................................................................................1911.001010000
.................A--CCT-------ACCATTACTG-------------------T--------------------A------CGATGC--TA-------------------------------------------------------------------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................2411.001001000
.............GAAAA--CCT-------ACCATTACTG-------------------T--------------------A------CGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACACGAAAGTA---ATTCT........................................1911.001000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATATATACACGAAAGT.................................................1911.001000001
.GTAAAAAAAAAGGAAAA--CCT-------ACCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTA---ATTCTTCTTTTTTGTTAAATA---A----------------T...2711.001100000
....AAAAAAAAGGAAAA--CCT-------ACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
................AA--CCT-------ACCATTACTG-------------------T--------------------A------CGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTA---ATTCTTCTTTTTTGTTAAATA---A----------------T...2811.001010000
................AA--CCT-------ACCATTACTG-------------------T--------------------A------CGATGC--T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..............................................................................................................................................................................................................................................................................................................................................................................TTATCAGTCTTTTTTCGAACACGGT-.................................................................................................................................................................2511.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA---ATTCTTCTTTTTTGTTAAATA---.....................2411.001100000
........AAAAGGAAAA--CCT-------ACCATTACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
................AA--CCT-------ACCATTACTG-------------------T--------------------A------CGATGC--TA-------------------------------------------------------------------------------------------------------AG---------------------------------------------------------------------------------------------------------------------------------------T.......................................................................................................................................................................................................................2811.001010000
........................................................................................................................................................................................................................................................................................................................................................................................TTTTTCGAACACGGT-GATT------------------TT-----------------------------------------------TTT.......................................................................................2411.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTA---ATTCTTCTTTTTTGT..............................2011.001010000
...............AAA--CCT-------ACCATTACTG-------------------T--------------------A------CGATGC--TA-------------------------------------------------------------------------------------------------------A................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTA---ATTCTTCTTTTTTGTTAAA..........................2311.001100000
..............................................................................................................................................................................................................................................................................................................................................................................TTATCAGTCTTTTTTCGAACAC.....................................................................................................................................................................2211.001010000
....................................ACTG-------------------T--------------------A------CGATGC--TA-------------------------------------------------------------------------------------------------------AG---------------------------------------------------------------------------------------------------------------------------------------TA......................................................................................................................................................................................................................1811.001100000
.....AAAAAAAGGAAAA--CCT-------ACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
........................................................................................................................................................................................................................................................................................................................................................................................TTTTTCGAACACGGT-GATT------------------T..........................................................................................................................................2011.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ATTCTTCTTTTTTGTTAAAT.........................2111.001100000
...............AAA--CCT-------ACCATTACTG-------------------T--------------------A------CGATGC--TA-------------------------------------------------------------------------------------------------------AG---------------------------------------------------------------------------------------------------------------------------------------T.......................................................................................................................................................................................................................2911.001010000
.................A--CCT-------ACCATTACTG-------------------T--------------------A------CGATGC--TA-------------------------------------------------------------------------------------------------------AG---------------------------------------------------------------------------------------------------------------------------------------........................................................................................................................................................................................................................2611.001100000
................AA--CCT-------ACCATTACTG-------------------T--------------------A------CGATGC--TA-------------------------------------------------------------------------------------------------------AG---------------------------------------------------------------------------------------------------------------------------------------C.......................................................................................................................................................................................................................2811.001010000
................................................................................................................................................................................................................................................................................................................................................................................ATCAGTCTTTTTTCGAACACGGT-.................................................................................................................................................................2311.001000010
...........................................................................................................................................................................................................................................................................................................................................................AATATTATTATACACTTCTTTATCAGTC..................................................................................................................................................................................2811.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................GATT------------------TT-----------------------------------------------TTTTT--ACATTTTAC..........................................................................2011.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATT------------------TT-----------------------------------------------TTTTT--ACATTTTACCT........................................................................2111.001010000
......................................................................................................................................................................................................................................................................................................................................................................................CTTTTTTCGAACACGGT-GAT..............................................................................................................................................................2011.001010000
...............AAA--CCT-------ACCATTACTG-------------------T--------------------A------CGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.....................CT-------ACCATTACTG-------------------T--------------------A------CGATGC--TA-------------------------------------------------------------------------------------------------------A................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.................................................................................................................................................................................................................................................................................................................................................................ATTATACACTTCTTTATCAGT...................................................................................................................................................................................2111.001010000
....................................................................................................................................................................................................................................................................................................................................................ATTTGTTAATATTATTATACACT..............................................................................................................................................................................................2311.001010000
...................................TACTG-------------------T--------------------A------CGATGC--TA-------------------------------------------------------------------------------------------------------AG---------------------------------------------------------------------------------------------------------------------------------------T.......................................................................................................................................................................................................................1811.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................GATT------------------TT-----------------------------------------------TTTTT--ACATTTTACC.........................................................................2111.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................TTTCGAACACGGT-GATT------------------TT-----------------------------------------------TT........................................................................................2111.001010000
...AAAAAAAAAGGAAAA--CCT-------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18180.061010000
droBip1
AGCAAACAAATTAAAAAT--GGT-------AT---------TTTACGATTTATTT---GTATATATATATATATATA--TA------TATATA--CGC--------------------------------TATAATATAT-------------------------------------------AT----A-------ATATATAT------------ATATATATATATATATATACAT------AT-------------AT-------------ATA----TATA--TA-----------------CGCTAT----------ATACGCTTTATTTT------------------------------------------------T-----------------------------------------------------------------------AT-GTA------------------------------------------------------------------C----------------CATATT-SizeHit CountTotal NormTotal
No Reads
droKik1
GTGCACAATTTTGGAAAT--GGC----------------------------------------------------------TTTATATACAAA--TATATAATATA-TATTATAAAAATATTATTATAT------TACACATATATATATATATATATA-----------------------TAT----A--------TATATAT------------GTATACATATAT--CT----TAA-----------------------------------------------------------------------------------------------TA------------------------------------------------T---ATAAAAATCTCCTGTCACTAT-----------------------------------------------G----------------------------------------------------------------------------------------TTTGTT-SizeHit CountTotal NormTotal
No Reads
droFic1
ATGTATACAT------------------------------------------------------------ATGTATG--TATATATATACATG--TAT-------------------------------------------------------------------------------------AT----G-------CTATATAT------------ATATATATATATATATATATAT------AT-------------AT-------------ATA----TATA--TA-------------------TTTGATCTCTATATATA---------TA------------------------------------------------T-----------------------------------T-TATATAT---------------------------A-------------------------------------------------------------------------TA----------------TAT-SizeHit CountTotal NormTotal
No Reads
droEle1
ATATGTATAT------------------------------------------------ATAT----GTATATA--------TATATATATAAA--TAT---------------------ATATATATATATATAAAATAT-------------------------------------------AT----A---AATA---TATAT------------ATATATATATAT-------------------------------TTATTATATATATATAAATATATACATA------------------------------AATATATA---------TA------------------------------------------------T-----------------------------------------------------------------------AT-ATA------------------------------------------------------------------AATA----------------TAT-SizeHit CountTotal NormTotal
No Reads
droRho1
CGGTGATCCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------------------TTTTT--ATATTATACCTTTACATATATT--ACACG-ATCTA---ATTCTTCTTTTTTGTTACGTA---A----------------TAT-SizeHit CountTotal NormTotal
No Reads
droBia1
ATTATTAGTCAAAATTAT--TTA--TTATATT--------------------------A--TATACA-ATACATGTG--CA------TATACAGACAT------------------------------------------------------------ATATAATTCTA-----TATATGTGTAT----A-------CTGTACAG------------GCATACATATAT--AG----GCAAATGTGA-------------------------------------------AAATGCCCAAAG-----------------CCAAATACATTTCGAAAC------------------------------------------------TAC---------------------------------------------------------------------GC-TGT--------------------------------------------------------TTAT----TAA----------------TTTA-A-SizeHit CountTotal NormTotal
No Reads
droTak1
ATCAATCGATCAAGCAAT--CAA--TCAATCAGC-----T-------------------T--------------------C------GAAGGC--AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---------------------------------------------AGATTCAGTTCGA-------------------------------GTACCACGGT-GATC------------------CCC----------------------------------------------ATTTTAAATATTATACCTTTACATATAAT--GCGCA-ATCTAATTCTTCTTCTTTTTTGTTACATA---A----------------TAT-SizeHit CountTotal NormTotal
No Reads
droEug1
TATAAAATATAAAAATAT--AAA--------------------------------------AATATA--------AAAATA------TAAAAA--TAT-------AAAAATATAAAAATATAAAAATAT-AAAAATATAA-------------------------------------------AA----A--------TATAAAA------------ATATAAAA--AT--AT----AAAAATATAA-------------------------------------------AAATAGAAAAAA-----TATAAA----------AAATATAAAAAATA------------------------------------------------T-----------------------------------------------------------------------AA-AAA------------------------------------------------------------------A----------------TATAAA-SizeHit CountTotal NormTotal
No Reads
dm3
TGTAT-----------------------------------------------------ATATGTATATATGTATATA--TG------TATATA--TGT------------------------------------------------------------ATATATGT--A-----TATA----------------------TGTATATATGTATATATGTATATATGTAT--AT----ATG-----------------------------------------------------------------------------------------------TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTATT------------ATTATTGT-TTA--------------------------------------------------------TTAT----TAA----------------TTTAAT-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................T--AT----ATG-----------------------------------------------------------------------------------------------TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTT.....................................................................................................................2132.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT------------ATTATTGT-TTA--------------------------------------------------------TTAT----TAA----------------TT.....24201.9038000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000002700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................T----ATG-----------------------------------------------------------------------------------------------TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTAT...................................................................................................................2141.5060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000010000001000000000000000000200
.......................................................................................................................................................................................................................................AT----ATG-----------------------------------------------------------------------------------------------TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTA....................................................................................................................2141.2550000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000200
........................................................................................................................................................................................................................................T----ATG-----------------------------------------------------------------------------------------------TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTAAA------------......................................................................................................2250.8040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................T----ATG-----------------------------------------------------------------------------------------------TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTATT------------AT....................................................................................................2440.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000
.......................................................................................................................................................................................................................................................................................................................................................................................................A-AGA----------------------------------TTGTTTATT------------ATTATTGT-.............................................................................................21200.75150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000042000000000000000000000000000032000000000000000020000000000000100
...............................................................................................................................................................................................................................................G-----------------------------------------------------------------------------------------------TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTATT------------AT....................................................................................................2140.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..............................................................................................................................................................................................................................................TG-----------------------------------------------------------------------------------------------TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTATT------------A.....................................................................................................2140.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AGA----------------------------------TTGTTTATT------------ATTATTGT-T............................................................................................21200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000007000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TG-----------------------------------------------------------------------------------------------TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTATT------------AT....................................................................................................2240.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................ATG-----------------------------------------------------------------------------------------------TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTATT------------......................................................................................................2140.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................................................................................................................................................................................TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTATT------------ATT...................................................................................................21170.3560000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000001000000000000000000000000100000000000000000000000000000000000200
................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------T---GTA-AGA----------------------------------TTGTTTATT------------ATT...................................................................................................20200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TG-----------------------------------------------------------------------------------------------TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTATT------------ATTAT.................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TA-AGA----------------------------------TTGTTTATT------------ATTATTGT-.............................................................................................22200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000001001000000000000200000
........................................................................................................................................................................................................................................T----ATG-----------------------------------------------------------------------------------------------TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTATT------------......................................................................................................2240.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................T----ATG-----------------------------------------------------------------------------------------------TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTATT------------ATT...................................................................................................2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................G-----------------------------------------------------------------------------------------------TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTAT...................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TA-AGA----------------------------------TTGTTTATT------------ATTATTG...............................................................................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000001000000000001000000000000000000000
..............................................................................................................................................................................................................................................TG-----------------------------------------------------------------------------------------------TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTATT------------......................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.......................................................................................................................................................................................................................................AT----ATG-----------------------------------------------------------------------------------------------TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTAT...................................................................................................................2240.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................T---GTA-AGA----------------------------------TTGTTTATT------------ATTATTGT-T............................................................................................25200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................GA----------------------------------TTGTTTATT------------ATTATTGT-TT...........................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000200000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTATT------------......................................................................................................18170.1830000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................T---GTA-AGA----------------------------------TTGTTTATT------------ATTATTGT-.............................................................................................24200.1530000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TA-AGA----------------------------------TTGTTTATT------------ATTATTGT-TTA--------------------------------------------------------T.................................26200.1530000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................................................................................................................................................................................................................................................................................TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTATT------------AT....................................................................................................20170.1220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
......................................................................................................................................................................................................................TATGTATATATGTAT--AT----ATG-----------------------------------------------------------------------------------------------T.........................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000
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...................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT------------ATTATTGT-TTA--------------------------------------------------------TTAT----TAA----------------TTT....25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGT-TTA--------------------------------------------------------TTAT----TAA----------------TTTAA..21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................................................................................................................................................................................................................................................................................TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTATT------------ATTATTGT-TTA--------------------------------------------------------..................................29160.0610000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TA------------------------------------------------T---GTA-AGA----------------------------------TTGTTTATT------------ATTATTGT-T............................................................................................27160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AGA----------------------------------TTGTTTATT------------ATTATTGT-.............................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATT------------ATTATTGT-TTA--------------------------------------------------------TTA...............................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................T---GTA-AGA----------------------------------TTGTTTATT------------ATTATTG...............................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGT-TTA--------------------------------------------------------TTAT----TAA----------------TTTAAT-21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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......................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------ATTATTGT-TTA--------------------------------------------------------TTAT----TAA----------------T......20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TATAT-----------------------------------------------------ATATATATATATATATATA--TA------TATATA--TAT------------------------------------------------------------ATATATATTTCTGCCTG--ATATATATA--TATAT------ATA---------------------------------------------TATATATATATATATA-TATATATATATATATATATATATA------------------------------TATTTATA---------TA------------------------------------------------T-----------------------------------------------------------------------AT-AAG------------------------------------------------------------------ATTATATTCACACGC---------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
ATATAGTATAT-----------------------------------------------ATATATACATATATA--TATATA------TATATA--TAT-------A--------------------TATATATAAAATAT-------------------------------------------AT----A-------GTATATAT------------ATATACATATATATATATATAT------AT-------------AT-------------ATATATATATATA------------------------------TATATATA--TAGTATATA------------------------------------------------T-----------------------------------------------------------------------A----------------------------------------------------------------------------------------TATAGT-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ATCAGAAAGTTCACGAAA--CCA-------CAGATTATTAAACATT--AATATCT---ATATATATATATATATATA--TA------TATATA--TAT------------------------------------------------------------ATGTTTGCTTTTAATTA--ATATGTATA--TATAT------ATA---------------------------------------------TATATATACATATATA-AATATATATTTATGTATAAATATA------------------------------TATACATA---------TA------------------------------------------------T------------------------------------------------TTATA------------------------------------------------------------------------------------------AATATATATATGTGTAACTTAATASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AATATCACGCGATAGAAA--AGAACGAAAA-----------TGTAT---GTGTTT---GTATGTATATATATGTATG--TA------TATATA--TGT------------------------------------------------------------ATATATATAT-----------ATGTATGTATATA------TATGTAT------------GTATATAT-----------------------------------ATG-TATGTATATATATGTATGTATATA------------------------------TATGT---------ATGTA------------------------------------------------T-----------------------------------------------------------------------GT-ATG-----------------------------------------------------------TT--------A----------------TATASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....TCACGCGATAGAAA--AGAACGAAAA-----------TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0511000000
..............GAAA--AGAACGAAAA-----------TGTAT---GTGTTT---G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0511000000
.............AGAAA--AGAACGAAAA-----------TGTAT---GTGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0511000000
............TAGAAA--AGAACGAAAA-----------TGTAT---GTGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0511000000

Generated: 05/15/2015 at 03:10 PM