ID:

dmo_32

 Coordinate:

scaffold_6308:1308226-1308287 +

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-27.4 -27.4 -27.4

Flybase annnotation

intergenic

No Repeatable elements found

mature

  1. dmo_32  scaffold_6308:1308226-1308247 +
  2. dmo_31  scaffold_6308:1308488-1308509 +
star

  1. dmo_32  scaffold_6308:1308265-1308286 +
  2. dmo_31  scaffold_6308:1308527-1308548 +

Sense Strand Reads

ATTCAATTTACAATCGGTCTATTGCAAAAATCTAAGTTAAATCATTTGTTTGCGAGCTATAACCTAGTGGAGTACGCTTATATTCCGTATCACTAAGTTATAGACCGCTGACAAAATGCTTTACTTTGCAAAAGGAAAATTGAAACAACTATATATACAAAG

***********************************..((((.((((((((.(((..(((((((.(((((..(((((.........)))))))))).)))))))..))).))).))))).))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V110

male body		 M046

female body

 M060

embryo

 V056

head

 V041

embryo

 V049

head
..................................................TGCGAGCTATAACCTAGTGGAG.......................................................................................... 22 0 2 929.50 1859 1801 27 0 15 8 8
.........................................................................................TCACTAAGTTATAGACCGCTGA................................................... 22 0 2 430.50 861 734 54 46 9 13 5
..................................................TGCGAGCTATAACCTAGTGGAGTA........................................................................................ 24 0 2 115.50 231 209 10 5 1 5 1
..................................................TGCGAGCTATAACCTAGTGGAGT......................................................................................... 23 0 2 109.00 218 163 14 28 5 4 4
.........................................................................................TCACTAAGTTATAGACCGCTG.................................................... 21 0 2 96.00 192 170 16 1 3 2 0
..................................................TGCGAGCTATAACCTAGTGGA........................................................................................... 21 0 4 46.25 185 155 16 6 5 0 3
........................................................................................ATCACTAAGTTATAGACCGCTGA................................................... 23 0 2 17.00 34 29 1 3 0 1 0
........................................................................................ATCACTAAGTTATAGACCGCTG.................................................... 22 0 2 14.50 29 27 0 0 1 0 1
.........................................................................................TCACTAAGTTATAGACCGCTGT................................................... 22 1 2 11.00 22 22 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTC........................................................................................ 24 1 2 9.50 19 19 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTAG....................................................................................... 25 1 2 9.00 18 17 0 0 0 0 1
.........................................................................................TCACTAAGTTATAGACCGCT..................................................... 20 0 2 8.50 17 12 4 1 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTGAA.................................................. 23 1 2 8.50 17 16 0 1 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTGAT.................................................. 23 1 2 7.50 15 14 0 1 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAC.......................................................................................... 22 1 4 7.25 29 27 0 2 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGC......................................................................................... 23 1 2 6.50 13 1 0 12 0 0 0
.......................................................................................TATCACTAAGTTATAGACCGCTG.................................................... 23 0 2 6.00 12 11 0 1 0 0 0
.......................................................................................TATCACTAAGTTATAGACCGCTGA................................................... 24 0 2 6.00 12 11 0 0 0 0 1
..................................................TGCGAGCTATAACCTAGTGG............................................................................................ 20 0 4 4.50 18 15 3 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTAA....................................................................................... 25 1 2 4.50 9 9 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGACC......................................................................................... 23 2 4 4.25 17 15 1 0 1 0 0
..................................................TTCGAGCTATAACCTAGTGGAGT......................................................................................... 23 1 2 3.50 7 0 0 7 0 0 0
.........................................................................................TCACTAAGTTGTAGACCGCTGA................................................... 22 1 2 3.00 6 3 1 0 0 0 2
.........................................................................................TCACTAAGTTATAGACCGC...................................................... 19 0 2 3.00 6 0 1 5 0 0 0
.......................................................................................TATCACTAAGTTATAGACCGCT..................................................... 22 0 2 2.50 5 5 0 0 0 0 0
........................................................................................ATCACTAAGTTATAGACCGCT..................................................... 21 0 2 2.50 5 5 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTAAA...................................................................................... 26 2 2 2.00 4 4 0 0 0 0 0
...................................................GCGAGCTATAACCTAGTGGAG.......................................................................................... 21 0 2 2.00 4 2 2 0 0 0 0
.........................................................................................TCACTAAGTTGTAGACCGCTG.................................................... 21 1 2 2.00 4 1 2 0 1 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTCT....................................................................................... 25 2 2 2.00 4 4 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTGATC................................................. 24 2 2 2.00 4 3 0 0 1 0 0
.........................................................................................TCACTAAGTTATAGACCGCTGAAA................................................. 24 1 2 2.00 4 1 3 0 0 0 0
..................................................TGCGAGCTATAACCTAGTG............................................................................................. 19 0 5 1.80 9 7 1 0 0 0 1
.........................................................................................TCACTAAGTTATAGACCGCTGAG.................................................. 23 1 2 1.50 3 3 0 0 0 0 0
..................................................TACGAGCTATAACCTAGTGGAG.......................................................................................... 22 1 2 1.50 3 3 0 0 0 0 0
..........................................................................................CACTAAGTTATAGACCGCTG.................................................... 20 0 2 1.50 3 0 3 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGTAG.......................................................................................... 22 1 2 1.50 3 3 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTACG...................................................................................... 26 0 2 1.50 3 3 0 0 0 0 0
.........................................................................................TGACTAAGTTATAGACCGCTGA................................................... 22 1 2 1.50 3 0 0 3 0 0 0
.........................................................................................TCACTGAGTTATAGACCGCTG.................................................... 21 1 2 1.50 3 2 1 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTAT....................................................................................... 25 1 2 1.50 3 3 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTT........................................................................................ 24 1 2 1.50 3 2 0 1 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAT.......................................................................................... 22 1 4 1.50 6 6 0 0 0 0 0
........................................................................................ATCACTAAGTTATAGACCGCTGT................................................... 23 1 2 1.50 3 3 0 0 0 0 0
.........................................................................................TCACTAGGTTGTAGACCGCTGA................................................... 22 2 2 1.50 3 0 0 0 1 0 2
..................................................TGCGAGCTATAACCTAGTGGAGTAC....................................................................................... 25 0 2 1.50 3 3 0 0 0 0 0
........................................................................................ATCACTAAGTTATAGACCGC...................................................... 20 0 2 1.50 3 0 0 3 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTCA....................................................................................... 25 2 2 1.50 3 2 0 0 1 0 0
...........................................................................................ACTAAGTTATAGACCGCTGA................................................... 20 0 2 1.50 3 1 2 0 0 0 0
.........................................................................................TCACTAAGCTATAGACCGCTGA................................................... 22 1 2 1.50 3 3 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCCCTGA................................................... 22 1 2 1.50 3 2 0 1 0 0 0
.................................................TTGCGAGCTATAACCTAGTGGA........................................................................................... 22 0 4 1.25 5 4 0 0 1 0 0
..................................................TGCGAGCTATAACATAGTGGAG.......................................................................................... 22 1 2 1.00 2 2 0 0 0 0 0
.........................................................................................TCACTAAGTTATATACCGCTGA................................................... 22 1 2 1.00 2 1 0 0 0 1 0
.........................................................................................TCACTAAGTTATAGACCGCTGG................................................... 22 1 2 1.00 2 1 0 0 0 1 0
..................................................TGCGAGCTATAACCTAGTGGAGTAGT...................................................................................... 26 2 2 1.00 2 2 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGAAG.......................................................................................... 22 1 3 1.00 3 2 0 0 0 1 0
........................................................................................ATCACTAAGTTATAGACCGCTGG................................................... 23 1 2 1.00 2 2 0 0 0 0 0
.........................................................................................TCACTAAGTTGTAGACCGCTTA................................................... 22 2 2 1.00 2 0 0 0 0 0 2
..................................................TGCGAGATATAACCTAGTGGAG.......................................................................................... 22 1 2 1.00 2 2 0 0 0 0 0
..................................................TGCGGGCTATAACCTAGTGGAG.......................................................................................... 22 1 2 1.00 2 2 0 0 0 0 0
.........................................................................................TCACTAAGTTATGGACCGCTGA................................................... 22 1 2 1.00 2 2 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTGTT.................................................. 23 2 2 1.00 2 2 0 0 0 0 0
..................................................TTCGAGCTATAACCTAGTGGAGTA........................................................................................ 24 1 2 1.00 2 0 0 2 0 0 0
........................................................................................ATCACTAAGTTATAGACCGCTGAA.................................................. 24 1 2 1.00 2 2 0 0 0 0 0
..................................................TGCGAGCTATAATCTAGTGGAG.......................................................................................... 22 1 2 1.00 2 2 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTGTTT................................................. 24 3 2 1.00 2 2 0 0 0 0 0
..................................................TTCGAGCTATAACCTAGTGGAG.......................................................................................... 22 1 2 1.00 2 1 0 1 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTGTC.................................................. 23 1 2 1.00 2 2 0 0 0 0 0
.......................................................................................TATCACTAAGTTATAGACCGCTGT................................................... 24 1 2 1.00 2 2 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTTGAG.......................................................................................... 22 1 2 1.00 2 2 0 0 0 0 0
..................................................TGCGAGCTGTAACCTAGTGGAG.......................................................................................... 22 1 2 1.00 2 2 0 0 0 0 0
..................................................TGCTAGCTATAACCTAGTGGAG.......................................................................................... 22 1 2 1.00 2 2 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGGG.......................................................................................... 22 1 2 1.00 2 2 0 0 0 0 0
..................................................TGCGAGCCATAACCTAGTGGAG.......................................................................................... 22 1 2 1.00 2 2 0 0 0 0 0
....................................................CGAGCTATAACCTAGTGGAG.......................................................................................... 20 0 2 1.00 2 2 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGAGGAG.......................................................................................... 22 1 2 1.00 2 2 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTGTTA................................................. 24 2 2 1.00 2 2 0 0 0 0 0
...................................................GCGAGCTATAACCTAGTGGAGT......................................................................................... 22 0 2 1.00 2 0 2 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTACGC..................................................................................... 27 0 2 1.00 2 2 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCTCTGA................................................... 22 1 2 1.00 2 2 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTGTAT................................................. 24 3 2 1.00 2 2 0 0 0 0 0
.............................................................................................TAAGTTATAGACCGCTGACA................................................. 20 0 2 1.00 2 2 0 0 0 0 0
.......................................................................................TATCACTAAGTTATAGACCG....................................................... 20 0 2 1.00 2 2 0 0 0 0 0
..........................................................................................CACTAAGTTATAGACCGCTGA................................................... 21 0 2 1.00 2 0 2 0 0 0 0
..................................................TGCGAGCTATAACCTAGTCGAG.......................................................................................... 22 1 2 1.00 2 2 0 0 0 0 0
..............................................TGTTTGCGAGCTATAACCTAG............................................................................................... 21 0 5 0.80 4 4 0 0 0 0 0
.................................................................................................TTATAGACCGCTGACAAAATGC........................................... 22 0 3 0.67 2 0 0 2 0 0 0
..............................................TGTTTGCGAGCTATAACCTAGTG............................................................................................. 23 0 5 0.60 3 2 0 0 0 1 0
........................................................................................ATCACCAAGTTGTAGACCT....................................................... 19 3 20 0.50 10 0 9 0 0 0 1
................................................TCTGCGAGCTATAACCTAGTGGAG.......................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0
..............................................................................................AAGTTATAGACCGCTGAT.................................................. 18 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTATA...................................................................................... 26 2 2 0.50 1 1 0 0 0 0 0
...................................................GCGAGCTATAACCTAGTGGAGTA........................................................................................ 23 0 2 0.50 1 0 1 0 0 0 0
..................................................CGCGAGCTATAACCTAGTGGAGT......................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTAA................................................... 22 1 2 0.50 1 0 1 0 0 0 0
.......................................................................................TATCACTAAGTTATAGACCGCTT.................................................... 23 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATGGACCGCTGAT.................................................. 23 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGCTATAGACCGCTG.................................................... 21 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTAAC...................................................................................... 26 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAGGTTATAGACCGCTG.................................................... 21 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCCCTACGTTATAGACCTCTG.................................................... 21 3 2 0.50 1 0 0 0 1 0 0
.........................................................................................TCACTAAGTTATAGACCGCTAAA.................................................. 23 2 2 0.50 1 1 0 0 0 0 0
.......................................................................................TATCACTAAGTTATAGACCGCTTTT.................................................. 25 3 2 0.50 1 0 1 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTATTCC.................................................................................... 28 3 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTTTA.................................................. 23 3 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTAAAA..................................................................................... 27 3 2 0.50 1 1 0 0 0 0 0
........................................................................................ATCACTAAGTTATAGACCGCTGAC.................................................. 24 0 2 0.50 1 0 0 1 0 0 0
..................................................TGTGAGCTATAACCTAGTGGAG.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCAAGCTATAACCTAGTGGAGTA........................................................................................ 24 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAGCCTAGTGGAG.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTATC...................................................................................... 26 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATGGACCGCTG.................................................... 21 1 2 0.50 1 0 1 0 0 0 0
.....................................................GAGCTATAACCTAGTGGAG.......................................................................................... 19 0 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCTCTCAGTTATAGACCGCTGA................................................... 22 2 2 0.50 1 0 0 0 0 1 0
..................................................TGCGAGCTATAACCTAGTGGAGTAGC...................................................................................... 26 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGGTATAGACCGCTGA................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTATCC..................................................................................... 27 2 2 0.50 1 0 1 0 0 0 0
.........................................................................................TCACTAAGTTACAGACCGCTG.................................................... 21 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTGTA.................................................. 23 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGTCCGCTGAT.................................................. 23 2 2 0.50 1 1 0 0 0 0 0
........................................................................................ATCACTAAGTTATAGACCGCTGTT.................................................. 24 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGCCCGCTGA................................................... 22 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTACAGACCGCTGA................................................... 22 1 2 0.50 1 0 0 1 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTATCA..................................................................................... 27 3 2 0.50 1 1 0 0 0 0 0
................................................TCTGCGAGCTATAACCTAGTGGAGT......................................................................................... 25 1 2 0.50 1 0 0 1 0 0 0
..................................................TGCGAGCTATAACCTAGCGGAG.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTTTAACCTAGTGGAGT......................................................................................... 23 1 2 0.50 1 0 0 0 1 0 0
.........................................................................................TCACTAAGTTATAGACCGATGA................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTTT....................................................................................... 25 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTGC................................................... 22 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................ACACTAAGTTATAGACCGCTGA................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTATAT..................................................................................... 27 3 4 0.50 2 2 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTATTC..................................................................................... 27 2 2 0.50 1 1 0 0 0 0 0
........................................................................................ATCACTAAGTTATAGACCGCTGATC................................................. 25 2 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGTAGTC........................................................................................ 24 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTAAAGACCGCTGAAA................................................. 24 2 2 0.50 1 0 1 0 0 0 0
..................................................TGCGAGCTATAACCTAGTTGAGT......................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0
..................................................TTAGAGCTATAACCTAGTGGAGT......................................................................................... 23 2 2 0.50 1 0 0 1 0 0 0
........................................................................................CTCACTAAGTTATAGACCGCTGA................................................... 23 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCGATAACCTAGTGGTGT......................................................................................... 23 2 2 0.50 1 0 0 0 1 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTTAT...................................................................................... 26 3 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAGGTTGTGGACCGCTGA................................................... 22 3 2 0.50 1 0 1 0 0 0 0
..................................................TGCGAGCTATAACCTGGTGGAG.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACAGCTG.................................................... 21 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTTA....................................................................................... 25 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATGGACCGCT..................................................... 20 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCACTGAA.................................................. 23 2 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTATTGGAG.......................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0
..................................................TGCGAGCTATAACCCAGTGGAG.......................................................................................... 22 1 2 0.50 1 0 0 0 0 0 1
..................................................TCCGAGCTATCACCTAGTGGAGT......................................................................................... 23 2 2 0.50 1 0 0 1 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTCC....................................................................................... 25 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTGAAAA................................................ 25 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTAGAG.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTCG....................................................................................... 25 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTGATA................................................. 24 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................TGACTAAGGTATAGACCGCGGA................................................... 22 3 2 0.50 1 0 0 0 1 0 0
..................................................TGCGAGCTATAACCTAATGGAG.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
....................................................TGAGCTATAACCTAGTGGAG.......................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0
.................................................CGGTGAGCTATAACCTAGTGGAGT......................................................................................... 24 3 2 0.50 1 0 0 1 0 0 0
..................................................TGCGAGCTATAACCTCGTGGAG.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAACTATAACCTAGTGGAG.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTCT................................................... 22 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCATTAAGTTATAGACCGCTGA................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGAGAGCTATAACCTAGTGGAG.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTTG................................................... 22 2 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTAAAACCTAGTGGAG.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCG....................................................... 18 0 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGCTATAGACCGCT..................................................... 20 1 2 0.50 1 0 0 1 0 0 0
..................................................TGGGAGCTATAACCTAGTGGAG.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGTTATAACCTAGTGGAG.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
......................................................................................GTATCACTAAGTTATAGACCGT...................................................... 22 1 2 0.50 1 0 1 0 0 0 0
.........................................................................................TCACTAAGTAATAGACCGCTGA................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTATTAT.................................................................................... 28 3 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTACAACCTAGTGGAG.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGCGCTATAACCTAGAGGCGTA........................................................................................ 24 3 2 0.50 1 0 0 0 1 0 0
.........................................................................................TCACTAAGTTATAGACCGCTGAAAAA............................................... 26 1 2 0.50 1 0 1 0 0 0 0
.........................................................................................TAACTAAGTTATAGACCGCTGA................................................... 22 1 2 0.50 1 1 0 0 0 0 0
........................................................................................ACCACTAAGTTATAGACCGCTGA................................................... 23 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTAGAGACCGCTG.................................................... 21 1 2 0.50 1 0 1 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGG......................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTACGTTGTATACCGCTGA................................................... 22 3 2 0.50 1 0 0 0 0 0 1
.......................................................................................TATCACTAAGTTATAGACCGGTT.................................................... 23 2 2 0.50 1 0 0 0 0 1 0
..........................................................................................CACTAAGTTATAGACCGCTGAAA................................................. 23 1 2 0.50 1 0 1 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTGTTG................................................. 24 3 2 0.50 1 1 0 0 0 0 0
.......................................................................................TATCACTAAGTTATAGACCGCTGAA.................................................. 25 1 2 0.50 1 0 1 0 0 0 0
..................................................TTCGAGCTATAACCTAGTGGA........................................................................................... 21 1 4 0.50 2 1 0 1 0 0 0
..................................................TCCGAGCGATAACCTAGTGTAG.......................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0
..................................................TGCGAGCTCTAACCTAGTGGAG.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTAGTC..................................................................................... 27 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTCGT.................................................. 23 3 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATATACCGCTG.................................................... 21 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTG........................................................................................ 24 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTAAGTTATAGACCGCTTC................................................... 22 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................TCACTGGGTTGTAGACCGCTGA................................................... 22 3 2 0.50 1 0 0 0 1 0 0
..................................................TGCGAGCTATAACCTAGTGGAGTATGC..................................................................................... 27 1 2 0.50 1 1 0 0 0 0 0
..................................................TGCAAGCTATAACCTAGTGGAG.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..............................................TGTTTGCGAGCTATAACCTAGTC............................................................................................. 23 1 5 0.40 2 2 0 0 0 0 0
.....................................................................................................................GTTTAACTTTGCAAAAGGA.......................... 19 2 6 0.33 2 0 2 0 0 0 0
.........................................................................................TCACTAATTTATAGACTGCTTA................................................... 22 3 3 0.33 1 0 0 0 0 0 1
.................................................TTGCGAGCTATAACCTGGTGGA........................................................................................... 22 1 4 0.25 1 0 0 0 0 0 1
..................................................TGAGAGCTATAACCTAGTGGA........................................................................................... 21 1 4 0.25 1 0 0 1 0 0 0
..................................................TACGAGCTATAACCTAGTGGA........................................................................................... 21 1 4 0.25 1 1 0 0 0 0 0
..................................................TGCTAGCTATAACCTAGTGGA........................................................................................... 21 1 4 0.25 1 0 0 1 0 0 0
..................................................TGCGAGCTATAACCTAGTGGTC.......................................................................................... 22 2 4 0.25 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGACT......................................................................................... 23 1 4 0.25 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGACA......................................................................................... 23 2 4 0.25 1 1 0 0 0 0 0
.................................................TTGCGAGCTATAACCTAGTGG............................................................................................ 21 0 4 0.25 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGTTT......................................................................................... 23 2 4 0.25 1 1 0 0 0 0 0
..................................................TGCGAGCTTTAACCTAGTGGACC......................................................................................... 23 3 4 0.25 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGATT......................................................................................... 23 1 4 0.25 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGC........................................................................................... 21 1 4 0.25 1 1 0 0 0 0 0
..................................................TGCGAGCTATAACCTAGTGGT........................................................................................... 21 1 4 0.25 1 1 0 0 0 0 0
..................................................TGCGATCTATAACCTAGTGGA........................................................................................... 21 1 4 0.25 1 1 0 0 0 0 0
..............................................TGTTTGCGAGCTATAACCTAGT.............................................................................................. 22 0 5 0.20 1 0 0 1 0 0 0
..................................................TTCGAGCTATAACCTAGT.............................................................................................. 18 1 5 0.20 1 0 0 1 0 0 0
.................................................TTGCGAGCTATAACCTAGTG............................................................................................. 20 0 5 0.20 1 0 1 0 0 0 0
..................................................TGCGAGCTATAACCTCGTGTA........................................................................................... 21 2 5 0.20 1 0 0 0 0 0 1
..................................................TGCGAGCTATAACCTGGAG............................................................................................. 19 2 5 0.20 1 1 0 0 0 0 0
.............TCGGTCCAATGCAAAAATCC................................................................................................................................. 20 3 8 0.13 1 0 0 0 0 0 1

Anti-sense strand reads

TAAGTTAAATGTTAGCCAGATAACGTTTTTAGATTCAATTTAGTAAACAAACGCTCGATATTGGATCACCTCATGCGAATATAAGGCATAGTGATTCAATATCTGGCGACTGTTTTACGAAATGAAACGTTTTCCTTTTAACTTTGTTGATATATATGTTTC

************************************..((((.((((((((.(((..(((((((.(((((..(((((.........)))))))))).)))))))..))).))).))))).))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 V056

head

 V110

male body
........................................................................................TAGTGGTTCAACATCTGG........................................................ 18 2 4 2.75 11 10 1 0
........................................................................................TAGTGGTTCAACATCTGGA....................................................... 19 3 20 0.95 19 19 0 0
..............................AGATTCAATTTGGTAAGC.................................................................................................................. 18 2 9 0.11 1 0 1 0
......................................................................................TGTAGTGGTTCAATATCTG......................................................... 19 3 11 0.09 1 0 0 1
............TAGCCAGATAGCGGTTATA................................................................................................................................... 19 3 15 0.07 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6308:1308176-1308337 + dmo_32 confident ATTCAATTTACAATCGGTCTATTGCAAAAATCTAAGTTAAATCATTTGTTTGCGAGCTATAACCTAGTGGAGTACGCTTATATTCCGTATCACTAAGTTATAGACCGCTGACAAAATGCTTTACTTTGCAAAAGGAAAATTGAAACAACTATATATACAAAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ATTCAATTTACAATCGGTCTATTGCAAAAATCTAAGTTAAATCATTTGTTTGCGAGCTATAACCTAGTGGAGTACGCTTATATTCCGTATCACTAAGTTATAGACCGCTGACAAAATGCTTTACTTTGCAAAAGGAAAATTGAAACAACTATATATACAAAGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..................................................TGCGAGCTATAACCTAGTGGAG..........................................................................................222929.50185927881501801
.........................................................................................TCACTAAGTTATAGACCGCTGA...................................................222430.5086154135946734
..................................................TGCGAGCTATAACCTAGTGGAGTA........................................................................................242115.50231105115209
..................................................TGCGAGCTATAACCTAGTGGAGT.........................................................................................232109.002181444528163
.........................................................................................TCACTAAGTTATAGACCGCTG....................................................21296.00192162031170
..................................................TGCGAGCTATAACCTAGTGGA...........................................................................................21446.25185160356155
........................................................................................ATCACTAAGTTATAGACCGCTGA...................................................23217.00341100329
........................................................................................ATCACTAAGTTATAGACCGCTG....................................................22214.50290011027
.........................................................................................TCACTAAGTTATAGACCGCTGT...................................................22211.00220000022
..................................................TGCGAGCTATAACCTAGTGGAGTC........................................................................................2429.50190000019
..................................................TGCGAGCTATAACCTAGTGGAGTAG.......................................................................................2529.00180010017
.........................................................................................TCACTAAGTTATAGACCGCT.....................................................2028.50174000112
.........................................................................................TCACTAAGTTATAGACCGCTGAA..................................................2328.50170000116
.........................................................................................TCACTAAGTTATAGACCGCTGAT..................................................2327.50150000114
..................................................TGCGAGCTATAACCTAGTGGAC..........................................................................................2247.25290000227
..................................................TGCGAGCTATAACCTAGTGGAGC.........................................................................................2326.50130000121
.......................................................................................TATCACTAAGTTATAGACCGCTG....................................................2326.00120000111
.......................................................................................TATCACTAAGTTATAGACCGCTGA...................................................2426.00120010011
..................................................TGCGAGCTATAACCTAGTGG............................................................................................2044.50183000015
..................................................TGCGAGCTATAACCTAGTGGAGTAA.......................................................................................2524.509000009
..................................................TGCGAGCTATAACCTAGTGGACC.........................................................................................2344.25171001015
.........................................................................................TCACTAAGTTATAGACCGC......................................................1923.006100050
.......................................................................................TATCACTAAGTTATAGACCGCT.....................................................2222.505000005
........................................................................................ATCACTAAGTTATAGACCGCT.....................................................2122.505000005
..................................................TGCGAGCTATAACCTAGTGGAGTAAA......................................................................................2622.004000004
...................................................GCGAGCTATAACCTAGTGGAG..........................................................................................2122.004200002
..................................................TGCGAGCTATAACCTAGTGGAGTCT.......................................................................................2522.004000004
.........................................................................................TCACTAAGTTATAGACCGCTGATC.................................................2422.004000103
..................................................TGCGAGCTATAACCTAGTG.............................................................................................1951.809101007
.........................................................................................TCACTAAGTTATAGACCGCTGAG..................................................2321.503000003
..........................................................................................CACTAAGTTATAGACCGCTG....................................................2021.503300000
..................................................TGCGAGCTATAACCTAGTGGAGTACG......................................................................................2621.503000003
..................................................TGCGAGCTATAACCTAGTGGAGTAT.......................................................................................2521.503000003
..................................................TGCGAGCTATAACCTAGTGGAGTT........................................................................................2421.503000012
..................................................TGCGAGCTATAACCTAGTGGAT..........................................................................................2241.506000006
........................................................................................ATCACTAAGTTATAGACCGCTGT...................................................2321.503000003
..................................................TGCGAGCTATAACCTAGTGGAGTAC.......................................................................................2521.503000003
........................................................................................ATCACTAAGTTATAGACCGC......................................................2021.503000030
..................................................TGCGAGCTATAACCTAGTGGAGTCA.......................................................................................2521.503000102
...........................................................................................ACTAAGTTATAGACCGCTGA...................................................2021.503200001
.................................................TTGCGAGCTATAACCTAGTGGA...........................................................................................2241.255000104
.........................................................................................TCACTAAGTTATAGACCGCTGG...................................................2221.002010001
..................................................TGCGAGCTATAACCTAGTGGAGTAGT......................................................................................2621.002000002
........................................................................................ATCACTAAGTTATAGACCGCTGG...................................................2321.002000002
.........................................................................................TCACTAAGTTATAGACCGCTGTT..................................................2321.002000002
........................................................................................ATCACTAAGTTATAGACCGCTGAA..................................................2421.002000002
.........................................................................................TCACTAAGTTATAGACCGCTGTTT.................................................2421.002000002
.......................................................................................TATCACTAAGTTATAGACCGCTGT...................................................2421.002000002
....................................................CGAGCTATAACCTAGTGGAG..........................................................................................2021.002000002
...................................................GCGAGCTATAACCTAGTGGAGT.........................................................................................2221.002200000
..................................................TGCGAGCTATAACCTAGTGGAGTACGC.....................................................................................2721.002000002
.........................................................................................TCACTAAGTTATAGACCGCTGTAT.................................................2421.002000002
.............................................................................................TAAGTTATAGACCGCTGACA.................................................2021.002000002
.......................................................................................TATCACTAAGTTATAGACCG.......................................................2021.002000002
..........................................................................................CACTAAGTTATAGACCGCTGA...................................................2121.002200000
..............................................TGTTTGCGAGCTATAACCTAG...............................................................................................2150.804000004
.................................................................................................TTATAGACCGCTGACAAAATGC...........................................2230.672000020
..............................................TGTTTGCGAGCTATAACCTAGTG.............................................................................................2350.603010002
..............................................................................................AAGTTATAGACCGCTGAT..................................................1820.501000001
..................................................TGCGAGCTATAACCTAGTGGAGTATA......................................................................................2620.501000001
...................................................GCGAGCTATAACCTAGTGGAGTA........................................................................................2320.501100000
.......................................................................................TATCACTAAGTTATAGACCGCTT....................................................2320.501000001
..................................................TGCGAGCTATAACCTAGTGGAGTAAC......................................................................................2620.501000001
.......................................................................................TATCACTAAGTTATAGACCGCTTTT..................................................2520.501100000
.........................................................................................TCACTAAGTTATAGACCGCTTTA..................................................2320.501000001
..................................................TGCGAGCTATAACCTAGTGGAGTAAAA.....................................................................................2720.501000001
........................................................................................ATCACTAAGTTATAGACCGCTGAC..................................................2420.501000010
..................................................TGCGAGCTATAACCTAGTGGAGTATC......................................................................................2620.501000001
.....................................................GAGCTATAACCTAGTGGAG..........................................................................................1920.501000001
..................................................TGCGAGCTATAACCTAGTGGAGTAGC......................................................................................2620.501000001
.........................................................................................TCACTAAGTTATAGACCGCTGTA..................................................2320.501000001
........................................................................................ATCACTAAGTTATAGACCGCTGTT..................................................2420.501000001
..................................................TGCGAGCTATAACCTAGTGGAGTATCA.....................................................................................2720.501000001
..................................................TGCGAGCTATAACCTAGTGGAGTTT.......................................................................................2520.501000001
.........................................................................................TCACTAAGTTATAGACCGCTGC...................................................2220.501000001
..................................................TGCGAGCTATAACCTAGTGGAGTATAT.....................................................................................2740.502000002
........................................................................................ATCACTAAGTTATAGACCGCTGATC.................................................2520.501000001
..................................................TGCGAGCTATAACCTAGTGGAGTTAT......................................................................................2620.501000001
..................................................TGCGAGCTATAACCTAGTGGAGTTA.......................................................................................2520.501000001
..................................................TGCGAGCTATAACCTAGTGGAGTCG.......................................................................................2520.501000001
.........................................................................................TCACTAAGTTATAGACCGCTCT...................................................2220.501000001
.........................................................................................TCACTAAGTTATAGACCGCTTG...................................................2220.501000001
.........................................................................................TCACTAAGTTATAGACCG.......................................................1820.501000001
......................................................................................GTATCACTAAGTTATAGACCGT......................................................2220.501100000
..................................................TGCGAGCTATAACCTAGTGGAGG.........................................................................................2320.501000001
.........................................................................................TCACTAAGTTATAGACCGCTGTTG.................................................2420.501000001
.......................................................................................TATCACTAAGTTATAGACCGCTGAA..................................................2520.501100000
.........................................................................................TCACTAAGTTATAGACCGCTCGT..................................................2320.501000001
..................................................TGCGAGCTATAACCTAGTGGAGTG........................................................................................2420.501000001
.........................................................................................TCACTAAGTTATAGACCGCTTC...................................................2220.501000001
..............................................TGTTTGCGAGCTATAACCTAGTC.............................................................................................2350.402000002
..................................................TGCGAGCTATAACCTAGTGGTC..........................................................................................2240.251000001
..................................................TGCGAGCTATAACCTAGTGGACA.........................................................................................2340.251000001
.................................................TTGCGAGCTATAACCTAGTGG............................................................................................2140.251000001
..................................................TGCGAGCTATAACCTAGTGGC...........................................................................................2140.251000001
..................................................TGCGAGCTATAACCTAGTGGT...........................................................................................2140.251000001
..............................................TGTTTGCGAGCTATAACCTAGT..............................................................................................2250.201000010
.................................................TTGCGAGCTATAACCTAGTG.............................................................................................2050.201100000

Generated: 10/20/2015 at 07:32 PM