ID:

dmo_315

 Coordinate:

scaffold_6496:23421673-23421744 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-33.9 -33.7 -33.6

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Galileo_DMDNAP-
mature
  1. dmo_315  scaffold_6496:23421673-23421696 +
  2. scaffold_6540:670923-670946 +
  3. scaffold_6541:1331669-1331692 +
  4. scaffold_6680:24027538-24027561 -
  5. scaffold_6680:24090053-24090076 -
star

Sense Strand Reads

AAGTAATGCTCGAAAAAAAGTGTGCAAAACGCTTTACACTACTTGTCGGGTCTATGTGTTCTGTGGTTAGTGGCAAGGTGTAAACGGCCAGGCGATTTGAAACAGGACGCCACTCACGACTCATCTGTGGTGTATTTCCATTCAAACTCCACTCCATATGGCATTGGCGACT
***********************************(((((((..((.(((((...(((((((((....(((.((..(((.......)))..)).)))....))))))))).......)))))))..)))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
..................................................TCTATGTGTTCTGTGGTTAGTGGC.................................................................................................. 24 0 5 3.60 18 13 4 0 1
..................................................TCTATGTGTTCTGTGGTTAGTGG................................................................................................... 23 0 20 1.55 31 19 5 7 0
..................................................TCTATGTGTTCTGTGGTTAGTGGCA................................................................................................. 25 0 2 1.00 2 2 0 0 0
...................................................CTATGTGTTCTGTGGTTAGTGGC.................................................................................................. 23 0 5 0.40 2 2 0 0 0
...................................................CTATGTGTTCTGTGGTTAGTGG................................................................................................... 22 0 20 0.20 4 3 1 0 0
..................................................TCTATGTGTTCTGTGGTTAGTG.................................................................................................... 22 0 20 0.20 4 4 0 0 0
.................................................GTCTATGTGTTCTGTGGTTAGTGGC.................................................................................................. 25 0 5 0.20 1 0 1 0 0
......................................................TGGGTTCTGGGGGTAGTGGC.................................................................................................. 20 3 10 0.10 1 1 0 0 0
..................................................TCTATGTGTTCTGTGGTTAGT..................................................................................................... 21 0 20 0.10 2 2 0 0 0
...............AAAAGTGTGCAAAACGCTTTACACTAC.................................................................................................................................. 27 0 20 0.05 1 1 0 0 0
.................................................GTCTATGTGTTCTGTGGTTAGTGG................................................................................................... 24 0 20 0.05 1 1 0 0 0
..................................................TCTATGTGTTCTGTGGTTAG...................................................................................................... 20 0 20 0.05 1 1 0 0 0
...................GTGTGCAAAACGCTTTACACT.................................................................................................................................... 21 0 20 0.05 1 1 0 0 0
..................................................TCTATGTGTTCTGTGGTTAGTGGA.................................................................................................. 24 1 20 0.05 1 0 1 0 0
........................................................................GCTAGGGGTAAAAGGCCA.................................................................................. 18 3 20 0.05 1 1 0 0 0
..................AGTGTGCAAAACGCTTTACACTACT................................................................................................................................. 25 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

TTCATTACGAGCTTTTTTTCACACGTTTTGCGAAATGTGATGAACAGCCCAGATACACAAGACACCAATCACCGTTCCACATTTGCCGGTCCGCTAAACTTTGTCCTGCGGTGAGTGCTGAGTAGACACCACATAAAGGTAAGTTTGAGGTGAGGTATACCGTAACCGCTGA
***********************************(((((((..((.(((((...(((((((((....(((.((..(((.......)))..)).)))....))))))))).......)))))))..)))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V049
head
.......CGAGCTTTTTTTCACACGTTTTGC............................................................................................................................................. 24 0 18 0.06 1 1 0
................................................CCAGATACACAAGACACCAAT....................................................................................................... 21 0 20 0.05 1 1 0
.....................................................................................................................GTGAGTAGACACCACGTAG.................................... 19 3 20 0.05 1 1 0
........................GTTTTGCGAAATGTGATGACC............................................................................................................................... 21 1 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:23421623-23421794 + dmo_315 AAGTAATGCTCGAAAAAAAGTGTGCAAAACGCTTTACACTACTTGTCGGGTCTATGTGTTCTGTGGTTAGTGGCAAGGTGTAAACGGCCAGGCGATTTGAAACAGGACGCCACTCACGACTCATCTGTGGTGTATTTCCATTCAAACTCCACTCCATATGGCATTGGCGACT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AAGTAATGCTCGAAAAAAAGTGTGCAAAACGCTTTACACTACTTGTCGGGTCTATGTGTTCTGTGGTTAGTGGCAAGGTGTAAACGGCCAGGCGATTTGAAACAGGACGCCACTCACGACTCATCTGTGGTGTATTTCCATTCAAACTCCACTCCATATGGCATTGGCGACTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................TCTATGTGTTCTGTGGTTAGTGGC..................................................................................................2453.60181310040
..................................................TCTATGTGTTCTGTGGTTAGTGG...................................................................................................23201.55311900057
..................................................TCTATGTGTTCTGTGGTTAGTGGCA.................................................................................................2521.002200000
...................................................CTATGTGTTCTGTGGTTAGTGGC..................................................................................................2350.402200000
...................................................CTATGTGTTCTGTGGTTAGTGG...................................................................................................22200.204300010
..................................................TCTATGTGTTCTGTGGTTAGTG....................................................................................................22200.204400000
.................................................GTCTATGTGTTCTGTGGTTAGTGGC..................................................................................................2550.201000010
..................................................TCTATGTGTTCTGTGGTTAGT.....................................................................................................21200.102200000
...............AAAAGTGTGCAAAACGCTTTACACTAC..................................................................................................................................27200.051100000
.................................................GTCTATGTGTTCTGTGGTTAGTGG...................................................................................................24200.051100000
..................................................TCTATGTGTTCTGTGGTTAG......................................................................................................20200.051100000
...................GTGTGCAAAACGCTTTACACT....................................................................................................................................21200.051100000
..................................................TCTATGTGTTCTGTGGTTAGTGGA..................................................................................................24200.051000010
..................AGTGTGCAAAACGCTTTACACTACT.................................................................................................................................25200.051100000

Generated: 05/15/2015 at 03:10 PM