ID:

dmo_305

 Coordinate:

scaffold_6496:17567545-17567625 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.8 -40.7 -40.5

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(TGGG)nSimple_repeatSimple_repeat+
mature
  1. dmo_190  scaffold_6328:2201889-2201908 -
  2. dmo_305  scaffold_6496:17567545-17567564 +
  3. scaffold_6500:15950208-15950227 +
  4. scaffold_6540:28580403-28580422 +
star

Sense Strand Reads

ATTCCAGATAAGAGCACAGTGAGTCAGTAAGGCAGGCGGGCAGTCGGCCGGTGGGTGGCTGGGTGGCTGGGTGGCTGGCTGGGTGGTTGTATTAAAGATTATGTCAGAGCCCAGCCAAAAATATGCGCCAATGGTATTTTTATATTGTGTGCCAAAAATATGTGGGCAATTCCCCTACGGC
***********************************.(((.((.(((((((.....))))))).)).)))..(((((((((((((..((((((........))).))).))))))))).........))))................*********************************** 		Read size # Mismatch Hit Count Total Norm Total V049
head
 V056
head
 V110
male body		 M046
female body
 M060
embryo
 V041
embryo
..................................................GTGGGTGGCTGGGTGGCTGG............................................................................................................... 20 0 4 20.50 82 17 27 23 11 3 1
...............................................................TGGCAGGGGGGCTGGCTGGGT................................................................................................. 21 2 2 13.00 26 17 9 0 0 0 0
...............................................................TGGCAGGGGGGCTAGCTGGGT................................................................................................. 21 3 5 11.40 57 31 26 0 0 0 0
...............................................................TGGCAGGGGGGCTAGCTGGGTG................................................................................................ 22 3 3 10.00 30 17 13 0 0 0 0
...............................................................TGGCCGGGGGGCTGGCTGGGT................................................................................................. 21 2 3 7.67 23 18 5 0 0 0 0
...............................................................TGGCAGGGGGGCTGGCTGGG.................................................................................................. 20 2 4 7.50 30 19 11 0 0 0 0
...............................................................TGGCAGGGTGGCTAGCTGGGT................................................................................................. 21 2 4 6.00 24 14 10 0 0 0 0
...............................................................TGGCAGGGGGGCTGGCTGGGTG................................................................................................ 22 2 2 5.50 11 8 3 0 0 0 0
..................................................GTGGGTGGCTGGGTGGCTG................................................................................................................ 19 0 4 4.00 16 6 5 3 2 0 0
..................................................GTGGGTGGCTGGGTGGCTGGG.............................................................................................................. 21 0 3 4.00 12 0 1 6 3 0 2
...............................................................TGGCAGGGTGGCTAGCTGGGTG................................................................................................ 22 2 3 3.67 11 7 4 0 0 0 0
...............................................................TGGCCGGGGGGCTAGCTGGGT................................................................................................. 21 3 6 3.33 20 13 7 0 0 0 0
...............................................................TGGCAGGGTGGGTAGCTGGGTG................................................................................................ 22 3 20 2.95 59 41 18 0 0 0 0
...............................................................TGGCAGGGTGGCTGGCTGGGT................................................................................................. 21 1 2 2.00 4 4 0 0 0 0 0
...............................................................TGGCCGGGGGGCTGGCTGGG.................................................................................................. 20 2 6 1.83 11 10 1 0 0 0 0
...............................................................TGGCAGGGGGGCTGGCTGGGG................................................................................................. 21 3 19 1.79 34 30 4 0 0 0 0
...............................................................TGGCAGGGTGGCTAGCTGGG.................................................................................................. 20 2 5 1.60 8 3 5 0 0 0 0
...............................................................TGGCAGGGTGGGTAGCTGGGT................................................................................................. 21 3 20 1.35 27 0 27 0 0 0 0
...............................................................TGGCCGGGGGGCTGGCTGGGTG................................................................................................ 22 2 3 1.33 4 3 1 0 0 0 0
...............................................................TGGCAGTGTGGCTGGCTGGGT................................................................................................. 21 2 3 1.33 4 1 3 0 0 0 0
...............................................................TGGCCGGGTGGCTAGCTGGGT................................................................................................. 21 2 3 1.33 4 3 1 0 0 0 0
...............................................................TGGCAGGGGGGCTGGCAGGGT................................................................................................. 21 3 10 1.30 13 1 12 0 0 0 0
..................................................GTGGGTGGCTGGGTGGCT................................................................................................................. 18 0 4 1.25 5 1 1 0 3 0 0
...............................................................TGGCAGGGGGGCTAGCTGGG.................................................................................................. 20 3 18 1.17 21 9 12 0 0 0 0
...............................................................TGGCAGGGGGGCTGGCTGGGTGGT.............................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0
..................................................................CTGGGTGGCACGCTGGGTGGT.............................................................................................. 21 2 1 1.00 1 0 0 1 0 0 0
...............................................................TGGCCGGGTGGCTGGCTGGGTG................................................................................................ 22 1 2 1.00 2 2 0 0 0 0 0
...............................................................TGGCAGTGTGGCTCGCTGGGTG................................................................................................ 22 3 6 1.00 6 6 0 0 0 0 0
...............................................................TGGCAGGGGGGCTGGCTGGGTC................................................................................................ 22 3 7 1.00 7 5 2 0 0 0 0
...............................................................TGGCCGGGTGGCTAGCTGGG.................................................................................................. 20 2 5 1.00 5 4 1 0 0 0 0
...............................................................TGGCCGGGGGGCTGGCTGGGTGTT.............................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0
...............................................................TGGCAGGGGGGCTGGCTGGGGG................................................................................................ 22 3 10 1.00 10 10 0 0 0 0 0
...................................................................TGGGAGGCTGGCTAGGTGGT.............................................................................................. 20 2 1 1.00 1 0 1 0 0 0 0
...............................................................TGGCAGGGTGGCTAGCAGGGT................................................................................................. 21 3 7 0.86 6 2 4 0 0 0 0
...............................................................TGGCCGGGGGGCTAGCTGGGTG................................................................................................ 22 3 4 0.75 3 3 0 0 0 0 0
...............................................................TGGCCGGGGGGCTGGCTGGGTC................................................................................................ 22 3 7 0.71 5 5 0 0 0 0 0
...............................................................TGGCCGGGTGGCTAGCTGGGTG................................................................................................ 22 2 3 0.67 2 2 0 0 0 0 0
...............................................................TGGCAGTGTGGCTCGCTGGGT................................................................................................. 21 3 9 0.67 6 5 1 0 0 0 0
...............................................................TGGCTGTGTGGCTCGCTGGGT................................................................................................. 21 2 3 0.67 2 1 1 0 0 0 0
..................................................GTGGGTGGCTGGGTGGCTA................................................................................................................ 19 1 5 0.60 3 1 0 1 0 1 0
...............................................................TGGAAGGGGGGCTGGCTGGGT................................................................................................. 21 3 11 0.55 6 2 4 0 0 0 0
...............................................................TGGCCGGGTGGCTGGCTGGGT................................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0
...............................................................TGGCAGGGTGGCTAGCTGGGTC................................................................................................ 22 3 8 0.50 4 1 3 0 0 0 0
...............................................................TGGCTGGGTGGCTAGCTGGTTG................................................................................................ 22 2 20 0.50 10 0 10 0 0 0 0
...............................................................TGGCAGGGTGGCTGGCTGGGTG................................................................................................ 22 1 2 0.50 1 0 1 0 0 0 0
...............................................................TGGCAGGGGGGCTGGTTGGGT................................................................................................. 21 3 14 0.50 7 0 7 0 0 0 0
...............................................................TGGCCGGGTGGCTGGCGGGGT................................................................................................. 21 2 2 0.50 1 1 0 0 0 0 0
..................................................GTGGGTGGCTGGGTGGCTGGGA............................................................................................................. 22 1 4 0.50 2 1 0 1 0 0 0
...............................................................TGGCAGGGGGGCTCGCTGGGTG................................................................................................ 22 3 2 0.50 1 1 0 0 0 0 0
...............................................................TGGCAGGGTGGCTGGCTGGG.................................................................................................. 20 1 2 0.50 1 0 1 0 0 0 0
...............................................................TGGCAGAGTGGCTAGCTGGGTG................................................................................................ 22 3 13 0.46 6 0 6 0 0 0 0
...............................................................TGGCCGTGTGGCTAGCTGGGT................................................................................................. 21 3 13 0.46 6 6 0 0 0 0 0
...............................................................TGGCCGGGGGGCTGGCTGGGGG................................................................................................ 22 3 9 0.44 4 4 0 0 0 0 0
...............................................................TGGCAGAGTGGCTAGCTGGGT................................................................................................. 21 3 16 0.44 7 3 4 0 0 0 0
...............................................................TGGCAGGGTGGCTAGCTAGGT................................................................................................. 21 3 7 0.43 3 3 0 0 0 0 0
...............................................................TGGCAGGGTGGCTAGCTGGGTGT............................................................................................... 23 3 7 0.43 3 3 0 0 0 0 0
...............................................................TGGCAGTGTGGCTCGCTGGGTGG............................................................................................... 23 3 3 0.33 1 1 0 0 0 0 0
...............................................................TGGCAGGGTGGCTAGCAGGGTG................................................................................................ 22 3 6 0.33 2 0 2 0 0 0 0
..................................................GTGGGTGGCTGGGTTGCTGGGT............................................................................................................. 22 1 3 0.33 1 1 0 0 0 0 0
...............................................................TGGCTGGGGGGCTGGCGGGGT................................................................................................. 21 2 3 0.33 1 1 0 0 0 0 0
...............................................................TGGCAGGGGGGCTGACTGGGTG................................................................................................ 22 3 6 0.33 2 0 2 0 0 0 0
...............................................................TGGCAGGGTGGCTAGCTGGGGG................................................................................................ 22 3 6 0.33 2 2 0 0 0 0 0
...............................................................TGGCTGGGGGGCTGGCTCGGT................................................................................................. 21 2 3 0.33 1 1 0 0 0 0 0
...............................................................TGGCGGGGTGGCTAGCTGGGTG................................................................................................ 22 2 3 0.33 1 1 0 0 0 0 0
...............................................................TGGCCGGGTGGCTGGCTGGGTCTT.............................................................................................. 24 3 3 0.33 1 1 0 0 0 0 0
...............................................................TGGCCGGGGGGCTGGCTGGGTT................................................................................................ 22 3 12 0.33 4 3 1 0 0 0 0
...............................................................TGGCCGGGGGGCTGGTTGGGTG................................................................................................ 22 3 10 0.30 3 3 0 0 0 0 0
...............................................................TGGCAGGGGGGCTGGCAGGGTG................................................................................................ 22 3 7 0.29 2 2 0 0 0 0 0
...................................................TGGGTGGCTGGGTGGCTGGG.............................................................................................................. 20 0 14 0.29 4 0 1 3 0 0 0
...............................................................TGGCCGTGTGGCTAGCTGGGTG................................................................................................ 22 3 11 0.27 3 3 0 0 0 0 0
.......................................................................TGGCAGGGTGGGTGGTTGTA.......................................................................................... 20 2 4 0.25 1 0 1 0 0 0 0
...............................................................TGGCAGGGTGGCTGGCTGGGTC................................................................................................ 22 2 4 0.25 1 0 1 0 0 0 0
...............................................................TGGCAGGGAGGCTAGCTGGGTG................................................................................................ 22 3 4 0.25 1 0 1 0 0 0 0
...............................................................TGGAAGGGTGGCTAGCTGGGT................................................................................................. 21 3 12 0.25 3 2 1 0 0 0 0
...............................................................TGGCAGGGTGGCTGGCTGGGTGC............................................................................................... 23 2 4 0.25 1 1 0 0 0 0 0
...............................................................TGGCCGGGGGGCTGACTGGGTG................................................................................................ 22 3 8 0.25 2 1 1 0 0 0 0
..................................................GTGGGTGGCTGGGGGGCTGG............................................................................................................... 20 1 4 0.25 1 1 0 0 0 0 0
...............................................................TGGCAGGGTGGCTAGCGGGGTG................................................................................................ 22 3 4 0.25 1 1 0 0 0 0 0
...............................................................TGGCAGGGGGGCTGGCTGGGTGC............................................................................................... 23 3 4 0.25 1 1 0 0 0 0 0
.................................................GGTGGGTGGCTTGGTGGCTG................................................................................................................ 20 1 4 0.25 1 1 0 0 0 0 0
...............................................................TGGCAGGGTGGCTAGCTAGGTG................................................................................................ 22 3 4 0.25 1 1 0 0 0 0 0
...............................................................TGGCCGGGGGGCTGGTTGGGT................................................................................................. 21 3 17 0.24 4 2 2 0 0 0 0
...............................................................TGGCAGGGTGGCTGGTTGGGT................................................................................................. 21 2 9 0.22 2 1 1 0 0 0 0
...............................................................TGGCCGGGTGGTTAGCTGGGTG................................................................................................ 22 3 18 0.22 4 2 2 0 0 0 0
...............................................................TGGCAGGGTGGCTAGCTGGGG................................................................................................. 21 3 14 0.21 3 2 1 0 0 0 0
...............................................................TGGCCGGGGGGTTGGCTGGGTG................................................................................................ 22 3 14 0.21 3 2 1 0 0 0 0
..................................................GTGGGTGGCTGGGTGGCTGT............................................................................................................... 20 1 5 0.20 1 1 0 0 0 0 0
...............................................................TGGCAGGGGGGCTGGCTCGGT................................................................................................. 21 3 5 0.20 1 0 1 0 0 0 0
...............................................................TGGCAGGGGGGCTGGCTGGGTGT............................................................................................... 23 3 5 0.20 1 1 0 0 0 0 0
...............................................................TGGCCGGGTGGCTAGCTGGGTGT............................................................................................... 23 3 5 0.20 1 1 0 0 0 0 0
...............................................................TGGCAGGGTGGCTAGCCGGGTG................................................................................................ 22 3 5 0.20 1 0 1 0 0 0 0
...............................................................GGGCTGTGTGGCTAGCTGGGT................................................................................................. 21 3 5 0.20 1 1 0 0 0 0 0
..................................................GTGGGTGGCTGGGTTGCTGG............................................................................................................... 20 1 5 0.20 1 0 1 0 0 0 0
...............................................................TGGCAGTGTGGCTTGCTGGGTG................................................................................................ 22 3 5 0.20 1 1 0 0 0 0 0
...............................................................TGGCCGGGTGGCTGGCAGGGTG................................................................................................ 22 2 5 0.20 1 1 0 0 0 0 0
...............................................................TGGCCGGGGGGCTGGCTGGGTGT............................................................................................... 23 3 5 0.20 1 1 0 0 0 0 0
...............................................................TGGCAGGGGGGCTGGCTGGGTGGG.............................................................................................. 24 3 5 0.20 1 1 0 0 0 0 0
..................................................GTGGGTGGCTGGGTGGC.................................................................................................................. 17 0 5 0.20 1 0 1 0 0 0 0
...............................................................TGGCCGGGGGGCTGGCAGGGT................................................................................................. 21 3 11 0.18 2 2 0 0 0 0 0
...............................................................TGGCAGGGGGGCTGGCTGGGTT................................................................................................ 22 3 11 0.18 2 2 0 0 0 0 0
...............................................................TGGCCGTGTGGCTCGCTGGGT................................................................................................. 21 3 12 0.17 2 2 0 0 0 0 0
...............................................................TGGCCGGGGGGCTGGCTGGGTGC............................................................................................... 23 3 6 0.17 1 1 0 0 0 0 0
...............................................................TGGAAGGGTGGCTGGCTAGGT................................................................................................. 21 3 6 0.17 1 0 1 0 0 0 0
..................................................GTGGGTGGCTGCGTGGCTGG............................................................................................................... 20 1 6 0.17 1 1 0 0 0 0 0
...............................................................TGGCCGGGGGGTTGGCTGGGT................................................................................................. 21 3 20 0.15 3 2 1 0 0 0 0
...............................................................TGGCCGTGTGGCTAGCTGGG.................................................................................................. 20 3 20 0.15 3 3 0 0 0 0 0
...............................................................TGGCTGAGTGGCTAGCTGGGTG................................................................................................ 22 2 7 0.14 1 1 0 0 0 0 0
...............................................................TGGCTGCGTGGCTAGCTGGGTC................................................................................................ 22 3 7 0.14 1 1 0 0 0 0 0
...............................................................TGGCAGGGGGGCTGGCTGGGTA................................................................................................ 22 3 7 0.14 1 0 1 0 0 0 0
..................................................GTGGGTGGCTGGGTGGCTCG............................................................................................................... 20 1 7 0.14 1 1 0 0 0 0 0
..................................................GTCGGTGGCTGGGTGGCGGG............................................................................................................... 20 2 7 0.14 1 0 1 0 0 0 0
...............................................................TGGCTGTGTGGCTAGCGGGGTG................................................................................................ 22 3 7 0.14 1 1 0 0 0 0 0
...............................................................TGGCAGAGTGGCTCGCTGGGTG................................................................................................ 22 3 14 0.14 2 0 2 0 0 0 0
...............................................................TGGCCGGGGGACTGGCTGGGT................................................................................................. 21 3 7 0.14 1 1 0 0 0 0 0
...............................................................TGGCAGGGGGGCTGGTTGGGTG................................................................................................ 22 3 7 0.14 1 0 1 0 0 0 0
..................................................GTGGGTGGCAGGGTGGCCGG............................................................................................................... 20 2 7 0.14 1 0 1 0 0 0 0
...............................................................TGGCAGGGGGGCTGGCCGGGT................................................................................................. 21 3 7 0.14 1 1 0 0 0 0 0
...............................................................TGGCCGCGTGGCTAGCTGGGT................................................................................................. 21 3 7 0.14 1 1 0 0 0 0 0
...............................................................TGGCCGGGTGGCTAGCAGGGT................................................................................................. 21 3 7 0.14 1 1 0 0 0 0 0
...............................................................TGGCTGAGTGGCTAGCTGGGT................................................................................................. 21 2 7 0.14 1 0 1 0 0 0 0
..................................................GTGGGTGGCTGGGTGGCTTG............................................................................................................... 20 1 7 0.14 1 1 0 0 0 0 0
...............................................................TGGCTGTGTGGCTAGCTGGG.................................................................................................. 20 2 7 0.14 1 1 0 0 0 0 0
...............................................................TGGCAGGGGGGCTGGCTGGGA................................................................................................. 21 3 14 0.14 2 2 0 0 0 0 0
...............................................................TGGCAGTGTGGCTGGCTGGG.................................................................................................. 20 2 7 0.14 1 0 1 0 0 0 0
..................................................GTGGGTGGCTGGGTGGCTT................................................................................................................ 19 1 8 0.13 1 1 0 0 0 0 0
...............................................................TGGCAGTGTGGCTGGCTGGGTC................................................................................................ 22 3 8 0.13 1 1 0 0 0 0 0
...............................................................TGGCCGGGTGGCTGGCTGGGTT................................................................................................ 22 2 8 0.13 1 1 0 0 0 0 0
...............................................................TGGCAGGGCGGCTAGCTGGGT................................................................................................. 21 3 9 0.11 1 0 1 0 0 0 0
...............................................................TGGCAGAGTGGCTGGCTGGGT................................................................................................. 21 2 9 0.11 1 0 1 0 0 0 0
...........................................................TGGGTGGCTGGGTGGGTGGC...................................................................................................... 20 1 9 0.11 1 0 0 0 0 0 1
..................................................GTGGGTGGCTGGGTGGCTGGT.............................................................................................................. 21 1 9 0.11 1 0 0 0 1 0 0
...............................................................TGGCGGTGTGGCTGGCTCGGT................................................................................................. 21 3 9 0.11 1 0 1 0 0 0 0
...............................................................TGGCCGGGTGGCTATCTGGGTG................................................................................................ 22 3 9 0.11 1 1 0 0 0 0 0
...................................................TGGGTGGCTGGGTGGCTGG............................................................................................................... 19 0 20 0.10 2 0 0 1 1 0 0
.......................................................TGGCAGTGTGGCTAGGTGGCTG........................................................................................................ 22 3 20 0.10 2 2 0 0 0 0 0
...............................................................TGGCTGGGGGGCTACCTGGGT................................................................................................. 21 3 10 0.10 1 0 1 0 0 0 0
...........................................................TGGGTGGCTGGGTGGCTGG....................................................................................................... 19 0 20 0.10 2 0 0 1 1 0 0
...............................................................TGGCTGTGTGGCTAGATGGGT................................................................................................. 21 3 20 0.10 2 2 0 0 0 0 0
...............................................................TGGCTGGGTGGCTAGCTGGATG................................................................................................ 22 2 20 0.10 2 2 0 0 0 0 0
...............................................................TGGCCGGGGGGCTGGTTGGG.................................................................................................. 20 3 20 0.10 2 1 1 0 0 0 0
...............................................................TGGCCGGGTGGCTGGCTGGGC................................................................................................. 21 2 10 0.10 1 0 1 0 0 0 0
...............................................................TGGCTGGGTGGCTAGCTGGAT................................................................................................. 21 2 20 0.10 2 2 0 0 0 0 0
..................................................GTGGGTGGATGGGTGGCTGGG.............................................................................................................. 21 1 10 0.10 1 0 1 0 0 0 0
...............................................................TGGCGGTGTGGCTAGCTGGG.................................................................................................. 20 3 20 0.10 2 0 2 0 0 0 0
...............................................................TGGCAGGGTGGCTAACTGGGTG................................................................................................ 22 3 10 0.10 1 1 0 0 0 0 0
...............................................................TGGCAGGGTGGCTGACAGGGTG................................................................................................ 22 3 10 0.10 1 0 1 0 0 0 0
...............................................................TGGCGGTGTGGCTAGCTGGGT................................................................................................. 21 3 10 0.10 1 1 0 0 0 0 0
...............................................................TGGCCGGGTGGCTGGCCGGGTC................................................................................................ 22 3 11 0.09 1 1 0 0 0 0 0
...............................................................TGGCTGGGCGGCTAGCCGGGT................................................................................................. 21 3 11 0.09 1 1 0 0 0 0 0
...............................................................TGGCCGGGTGGCTGGTTGGGT................................................................................................. 21 2 11 0.09 1 1 0 0 0 0 0
...............................................................TGGCCGGGTGACTAGCTGGGT................................................................................................. 21 3 11 0.09 1 1 0 0 0 0 0
...............................................................TGGCAGCGTGGCTAGCTGGGTG................................................................................................ 22 3 11 0.09 1 0 1 0 0 0 0
...............................................................TGGCAGGGTGGCTAGCTCGG.................................................................................................. 20 3 11 0.09 1 0 1 0 0 0 0
...........................................TGGGGCGGTGGGTGGCTCGGT..................................................................................................................... 21 3 11 0.09 1 1 0 0 0 0 0
...............................................................AGGCAGGGTGGCTAGCTGGGTG................................................................................................ 22 3 12 0.08 1 0 1 0 0 0 0
...............................................................TGGCAGCGTGGCTAGCTGGGT................................................................................................. 21 3 12 0.08 1 0 1 0 0 0 0
...............................................................TGGCTGCGTGGTTGGCTGGGTG................................................................................................ 22 2 12 0.08 1 0 1 0 0 0 0
...............................................................TGGCTGGGTGGCTAGCGGGTTGGT.............................................................................................. 24 3 12 0.08 1 0 1 0 0 0 0
...................................................................TGGGAGGCTGGCTAGATGGTT............................................................................................. 21 3 13 0.08 1 0 1 0 0 0 0
...........................................................TGGGAGTCTGGGTGGCTGCCT..................................................................................................... 21 3 13 0.08 1 0 1 0 0 0 0
...............................................................TGGCTGCGGGGCTAGCTGGGT................................................................................................. 21 3 13 0.08 1 0 1 0 0 0 0
..................................................GTGGGTGGCTGGGTGGATGGG.............................................................................................................. 21 1 14 0.07 1 0 1 0 0 0 0
...............................................................GGCCTGGGTGGCTTGCTGGGT................................................................................................. 21 3 14 0.07 1 0 1 0 0 0 0
..................................................GTGGGGGGCTGGGAGGCTGG............................................................................................................... 20 2 14 0.07 1 0 0 0 0 1 0
...............................................................TGGCCGGGTGGCTAGCTGGGTT................................................................................................ 22 3 14 0.07 1 1 0 0 0 0 0
..................................................GGGGGTGGCTGGGTGGCTGGGGT............................................................................................................ 23 3 14 0.07 1 0 0 0 0 1 0
...............................................................TGGCAGGGTGGCTACCTGGG.................................................................................................. 20 3 14 0.07 1 0 1 0 0 0 0
...............................................................TGGCAGGGTGGGTCGCTGGGTG................................................................................................ 22 3 14 0.07 1 1 0 0 0 0 0
...............................................................TGGCTGGGTGGTTAGCTGGGT................................................................................................. 21 2 15 0.07 1 1 0 0 0 0 0
...............................................................TGGCTGTGTGGCTAGCTGGGG................................................................................................. 21 3 15 0.07 1 0 1 0 0 0 0
...............................................................AGGCTGGGTGGCTAGCTGGGG................................................................................................. 21 3 16 0.06 1 1 0 0 0 0 0
...................................................TTGGTGGCTGGGTGGCTGGG.............................................................................................................. 20 1 16 0.06 1 0 0 0 0 1 0
...............................................................TGGCAGTGTGGCTGGATGGGTG................................................................................................ 22 3 16 0.06 1 0 1 0 0 0 0
...............................................................TGGCAGCGCGGCTGGCTGGGTG................................................................................................ 22 3 16 0.06 1 1 0 0 0 0 0
...............................................................TGGCAGGGTGGCTAGCTGTGT................................................................................................. 21 3 16 0.06 1 0 1 0 0 0 0
...............................................................AGGCAGGGTGGCTAGCTGGGT................................................................................................. 21 3 16 0.06 1 0 1 0 0 0 0
...............................................................TGGCAGTGTGGATGGCTGGGTG................................................................................................ 22 3 16 0.06 1 1 0 0 0 0 0
...............................................................TGGCTGCGTGGTTGGCTGGGT................................................................................................. 21 2 16 0.06 1 1 0 0 0 0 0
...............................................................TGGAAGGGTGGCTAGCTGGG.................................................................................................. 20 3 16 0.06 1 1 0 0 0 0 0
...............................................................TGGCTGGGTGGCTAGCTGTGTTG............................................................................................... 23 3 16 0.06 1 1 0 0 0 0 0
................................................................GGCGGGGTGGGTGGCTGGGTG................................................................................................ 21 2 17 0.06 1 1 0 0 0 0 0
...............................................................TGGCAGGGTGGCTAGCAGGG.................................................................................................. 20 3 17 0.06 1 1 0 0 0 0 0
...............................................................TGGCTGTGTGGTTGGCTGGGT................................................................................................. 21 2 17 0.06 1 0 1 0 0 0 0
...............................................................TGGCAGGGTGGCTGGCTGG................................................................................................... 19 1 17 0.06 1 1 0 0 0 0 0
...............................................................TGGGTGGGTGGCTGGCTGG................................................................................................... 19 1 20 0.05 1 0 0 0 1 0 0
...............................................................TGGCTGGGTGGCTTGCTGGTTG................................................................................................ 22 2 20 0.05 1 0 1 0 0 0 0
...............................................................TGGCTGAGTGGCTAGCTAGGT................................................................................................. 21 3 20 0.05 1 0 1 0 0 0 0
...............................................................TGGCCGGGTGGCTAGTTGGGT................................................................................................. 21 3 20 0.05 1 0 1 0 0 0 0
...............................................................TGGCAGGGTGGGTGGCTGGGGG................................................................................................ 22 3 20 0.05 1 1 0 0 0 0 0
...............................................................TGGCTGGGTGTCTAGCTGGAT................................................................................................. 21 3 20 0.05 1 1 0 0 0 0 0
.......................................................TGGCAGGGGGGCTGGGTGGGTG........................................................................................................ 22 3 20 0.05 1 0 1 0 0 0 0
...............................................................TGGCTGGGTGGCTAGCTGG................................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0
...............................................................TGGCTGTGTGGTTTGCTGGGT................................................................................................. 21 3 20 0.05 1 0 1 0 0 0 0
.......................................................AGGCAGGGTGGCTAGGTGGCT......................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
...............................................................TGGCTGTGTGGTTTGCTGGGTG................................................................................................ 22 3 20 0.05 1 1 0 0 0 0 0
...............................................................TGGCTGGGTGGCTCGCTGGATC................................................................................................ 22 3 20 0.05 1 1 0 0 0 0 0
...............................................................TGGCAGGGTGGGTCGCTGGG.................................................................................................. 20 3 20 0.05 1 1 0 0 0 0 0
...............................................................TGGCAGAGTGGCTAGCTGGG.................................................................................................. 20 3 20 0.05 1 0 1 0 0 0 0
...............................................................TGGCTGGGGGGTTAGCTGGGT................................................................................................. 21 3 20 0.05 1 1 0 0 0 0 0
...............................................................TGGCAGGGGGGCTGGGTGGGTG................................................................................................ 22 3 20 0.05 1 0 1 0 0 0 0
...............................................................TGGCGGGGTGGCTAGCTGGTTG................................................................................................ 22 3 20 0.05 1 0 1 0 0 0 0
...............................................................TGGCAGGGTGGCTAGCTAGG.................................................................................................. 20 3 20 0.05 1 0 1 0 0 0 0
...............................................................TGGCGGGGTGGTTAGCTGGGT................................................................................................. 21 3 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TAAGGTCTATTCTCGTGTCACTCAGTCATTCCGTCCGCCCGTCAGCCGGCCACCCACCGACCCACCGACCCACCGACCGACCCACCAACATAATTTCTAATACAGTCTCGGGTCGGTTTTTATACGCGGTTACCATAAAAATATAACACACGGTTTTTATACACCCGTTAAGGGGATGCCG
***********************************.(((.((.(((((((.....))))))).)).)))..(((((((((((((..((((((........))).))).))))))))).........))))................*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V049
head
.............................TCCGTCCGCACGGGAGCCGGC................................................................................................................................... 21 3 1 1.00 1 1 0
..............................CCGTCCGCACGGGAGCCGGC................................................................................................................................... 20 3 4 0.25 1 1 0
...GTTCTATTCGCGTGACACT............................................................................................................................................................... 19 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:17567495-17567675 + dmo_305 ATTCCAGATAAGAGCACAGTGAGT----------------CAGTAAGGCAGGCGGGCAGTCGGCCGGTGGGTGGCTGGGTGGCTGGGTGGCTGGCTGGGTGGTTGTATTAAAGATTATGTCAGAGCCCAGCCAAAAATATGCGCCAATGGTATTTTTATATTGTGTGCCAAAAATATGTGGGCAATTCCCC--TACGGC
droVir3 scaffold_12875:9533910-9534051 - ATTTGAGATAAGAGCACAGCCAGGACGGAGCGCGTGGGTGGCATTGGGC-------------------------------------------------------GTATTAAAGATTATGTCACAGC-CAGCCAAAAATATGTGCCAATGGTATTTTTATATTGTGCGTCAA-AGTATTTAGGCAATCGGTCGGGGCGGC
droGri2 scaffold_15245:2760773-2760904 - ATTTGAGATAAGCGCACATTCTGTTGGAGGCCCTTGGGAGCCGTTAGGC-------------------------------------------------------GTATTAAAGATTATGTCACAGC-CAGCCGGAAATATGCGCCAATGGTATTTATAAATTGTGTGCCTA-AATATTTTGGCCATTGG----------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ATTCCAGATAAGAGCACAGTGAGT----------------CAGTAAGGCAGGCGGGCAGTCGGCCGGTGGGTGGCTGGGTGGCTGGGTGGCTGGCTGGGTGGTTGTATTAAAGATTATGTCAGAGCCCAGCCAAAAATATGCGCCAATGGTATTTTTATATTGTGTGCCAAAAATATGTGGGCAATTCCCC--TACGGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................GTGGGTGGCTGGGTGGCTGG.................................................................................................................20420.50821111727323
..................................................................GTGGGTGGCTGGGTGGCTG..................................................................................................................1944.0016206503
..................................................................GTGGGTGGCTGGGTGGCTGGG................................................................................................................2134.0012320106
..................................................................GTGGGTGGCTGGGTGGCT...................................................................................................................1841.255301100
..................................................................GTGGGTGGCTGGGTGGCTA..................................................................................................................1950.603001011
..................................................................GTGGGTGGCTGGGTGGCTGGGA...............................................................................................................2240.502001001
...................................................................TGGGTGGCTGGGTGGCTGGG................................................................................................................20140.294000103
..................................................................GTGGGTGGCTGGGTGGCTGT.................................................................................................................2050.201001000
..................................................................GTGGGTGGCTGGGTGGC....................................................................................................................1750.201000100
..................................................................GTGGGTGGCTGGGTGGCTT..................................................................................................................1980.131001000
..................................................................GTGGGTGGCTGGGTGGCTGGT................................................................................................................2190.111100000
...................................................................TGGGTGGCTGGGTGGCTGG.................................................................................................................19200.102100001
...........................................................................TGGGTGGCTGGGTGGCTGG.........................................................................................................19200.102100001
droVir3
ATTTGAGATAAGAGCACAGCCAGGACGGAGCGCGTGGGTGGCATTGGGC-------------------------------------------------------GTATTAAAGATTATGTCACAGC-CAGCCAAAAATATGTGCCAATGGTATTTTTATATTGTGCGTCAA-AGTATTTAGGCAATCGGTCGGGGCGGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
ATTTGAGATAAGCGCACATTCTGTTGGAGGCCCTTGGGAGCCGTTAGGC-------------------------------------------------------GTATTAAAGATTATGTCACAGC-CAGCCGGAAATATGCGCCAATGGTATTTATAAATTGTGTGCCTA-AATATTTTGGCCATTGG----------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/15/2015 at 03:08 PM