ID:

dmo_302

 Coordinate:

scaffold_6540:11863782-11863845 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-44.1 -43.9 -43.5

Flybase annnotation

CDS [Dmoj\GI23140-cds]; exon [dmoj_GLEANR_8297:1]; intron [Dmoj\GI23140-in]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------###################-----------------------------------
TGAATTGTAAGAAGTTGTTCAACTCTGGCCCAGTCAGCTCTTGCTCAACATAGTGAGCTGACGTAGCTCAGCCTAATTAGTATAAATATACTGAGCTAAGATAGCTGACCATGTTGAGCAAGGTGCTATGTATGTCATATTATATATGCTATGCTATGCTATAT
***********************************((((((((((((((((.((.(((((...((((((((..((.(((...))).))..))))))))...))))).)).))))))))))))).)))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
 V041
embryo
 V056
head
..................................................TAGTGAGCTGACGTAGCTCAGC............................................................................................ 22 0 1 30.00 30 25 4 1 0
.................................................ATAGTGAGCTGACGTAGCT................................................................................................ 19 0 1 3.00 3 0 3 0 0
.................................................ATAGTGAGCTGACGTAGCTCAG............................................................................................. 22 0 1 2.00 2 0 1 0 1
..................................................TAGTGAGCTGACGTAGCTCATC............................................................................................ 22 1 1 1.00 1 1 0 0 0
..................................................TAGTGAGCTGACGCAGCTCAGC............................................................................................ 22 1 1 1.00 1 1 0 0 0
..................................................TGGTGAGCTGACGTAGCTCAGC............................................................................................ 22 1 1 1.00 1 0 1 0 0
...................................................AGTGAGCTGACGTAGCTCAGC............................................................................................ 21 0 1 1.00 1 1 0 0 0

Anti-sense strand reads

ACTTAACATTCTTCAACAAGTTGAGACCGGGTCAGTCGAGAACGAGTTGTATCACTCGACTGCATCGAGTCGGATTAATCATATTTATATGACTCGATTCTATCGACTGGTACAACTCGTTCCACGATACATACAGTATAATATATACGATACGATACGATATA
***********************************((((((((((((((((.((.(((((...((((((((..((.(((...))).))..))))))))...))))).)).))))))))))))).)))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
.................................AGTCGAGAACGAGTTGTATCACT............................................................................................................ 23 0 1 1.00 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:11863732-11863895 - dmo_302 TGAATTGTAAGAAGTTGTTCAACTCTGGCCCAGTCAGCTCTTGCTCAACATAGTGAGCTGACGTAGCTCAGCCTAATTAGTATAAATATACTGAGCTAAGATAGCTGACCATGTTGAGCAAGGTGCTATGTATGTCATATTATATATGCTATGCTATGCTATAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TGAATTGTAAGAAGTTGTTCAACTCTGGCCCAGTCAGCTCTTGCTCAACATAGTGAGCTGACGTAGCTCAGCCTAATTAGTATAAATATACTGAGCTAAGATAGCTGACCATGTTGAGCAAGGTGCTATGTATGTCATATTATATATGCTATGCTATGCTATATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................TAGTGAGCTGACGTAGCTCAGC............................................................................................22130.00304100250
.................................................ATAGTGAGCTGACGTAGCT................................................................................................1913.003300000
.................................................ATAGTGAGCTGACGTAGCTCAG.............................................................................................2212.002100100
...................................................AGTGAGCTGACGTAGCTCAGC............................................................................................2111.001000010

Generated: 05/15/2015 at 03:06 PM