dmo_3

ATTGGATATCCATCTATCAATCAACGCGTCTATTATAGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTAAATTAAGCAATTGGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAGAAGAAATCTAATCGAGTCGACTATGCG *********************************..(((((((.(((((.((.(((((((...((((((((((((.......)))....)))))))))...))))))).)).))))).)))))))....**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M060 embryo	V056 head	V049 head	V041 embryo	M046 female body	V110 male body
..................................................ATATTGTCCTGTCACAGCAGTA..............................................................................................	22	0	1	159680.00	159680	147406	1732	1371	7457	1570	144
..................................................ATATTGTCCTGTCACAGCAGT...............................................................................................	21	0	1	74825.00	74825	21652	26365	19243	1430	2645	3490
..................................................AGATTGTCCTGTCACAGCAGTA..............................................................................................	22	1	1	20736.00	20736	20728	3	0	4	0	1
..................................................ATATTGTCCTGTCACAGCAG................................................................................................	20	0	1	8361.00	8361	523	3479	3012	19	1225	103
..................................................ATATTGTCCTGTCACAGCAGC...............................................................................................	21	1	1	4145.00	4145	3937	151	47	6	2	2
..................................................ATATTGTCCTGTCACAGCAGTT..............................................................................................	22	1	1	3541.00	3541	163	1746	1217	48	244	123
..................................................AGATTGTCCTGTCACAGCAGT...............................................................................................	21	1	1	3133.00	3133	3063	37	33	0	0	0
..................................................ATAGTGTCCTGTCACAGCAGTA..............................................................................................	22	1	1	1391.00	1391	1382	6	0	3	0	0
..................................................ATATTGTCCTGTCACAGCA.................................................................................................	19	0	1	1337.00	1337	15	731	520	4	57	10
..................................................ATACTGTCCTGTCACAGCAGTA..............................................................................................	22	1	1	1281.00	1281	1272	3	1	4	0	1
..................................................TTATTGTCCTGTCACAGCAGTA..............................................................................................	22	1	1	1239.00	1239	1231	2	2	4	0	0
.................................................CATATTGTCCTGTCACAGCAGTA..............................................................................................	23	1	1	971.00	971	961	6	0	3	1	0
..................................................ATAATGTCCTGTCACAGCAGTA..............................................................................................	22	1	1	879.00	879	877	0	0	2	0	0
..................................................ATATTGTCCTGTCACAGCAGTAA.............................................................................................	23	1	1	759.00	759	211	240	160	59	75	14
..................................................ATATTGTCCTGTCACAGCAGTAT.............................................................................................	23	0	1	741.00	741	449	71	56	10	153	2
....................................................ATTGTCCTGTCACAGCAGTA..............................................................................................	20	0	1	723.00	723	715	0	0	2	6	0
..................................................ATATTTTCCTGTCACAGCAGTA..............................................................................................	22	1	1	713.00	713	705	1	1	3	2	1
..................................................ATATTGTCCTGTCACAGCAGTC..............................................................................................	22	1	1	702.00	702	604	37	39	21	1	0
..................................................ATATTGTCCTGTCACAGCCGT...............................................................................................	21	1	1	687.00	687	2	84	584	16	1	0
.............................................................................................CTGCTGAGCCGGGGCATTAACA...................................................	22	0	1	637.00	637	502	17	13	99	4	2
...................................................TATTGTCCTGTCACAGCAGTA..............................................................................................	21	0	1	619.00	619	511	3	3	3	99	0
..................................................ATATTGTCCTGTCACAGCAGGA..............................................................................................	22	1	1	617.00	617	592	2	6	17	0	0
..................................................ATATTGTACTGTCACAGCAGTA..............................................................................................	22	1	1	604.00	604	589	3	1	11	0	0
..................................................AGATTGTCCTGTCACAGCAGC...............................................................................................	21	2	1	559.00	559	555	2	2	0	0	0
..................................................ATCTTGTCCTGTCACAGCAGTA..............................................................................................	22	1	1	480.00	480	474	1	2	3	0	0
..................................................ATATTGTCCTGTAACAGCAGTA..............................................................................................	22	1	1	403.00	403	396	0	3	4	0	0
..................................................ATATTGTCCTGTCAAAGCAGTA..............................................................................................	22	1	1	389.00	389	380	2	2	5	0	0
..................................................ATATTGTCCTGCCACAGCAGTA..............................................................................................	22	1	1	363.00	363	333	5	5	18	2	0
..................................................ATATTGTCCTGTCACCGCAGT...............................................................................................	21	1	1	341.00	341	1	79	254	6	0	1
..................................................TGATTGTCCTGTCACAGCAGTA..............................................................................................	22	2	1	322.00	322	322	0	0	0	0	0
..................................................ACATTGTCCTGTCACAGCAGTA..............................................................................................	22	1	1	317.00	317	302	5	4	6	0	0
..................................................ATATTGGCCTGTCACAGCAGTA..............................................................................................	22	1	1	307.00	307	280	2	4	21	0	0
..................................................ATATTGTCCTGTCACATCAGT...............................................................................................	21	1	1	294.00	294	39	109	142	1	0	3
...................................................TATTGTCCTGTCACAGCAGT...............................................................................................	20	0	1	279.00	279	68	11	4	1	193	2
..................................................ATACTGTCCTGTCACAGCAGT...............................................................................................	21	1	1	272.00	272	186	52	31	0	0	3
..................................................ATATTGTCCTGTCACTGCAGTA..............................................................................................	22	1	1	264.00	264	260	1	0	3	0	0
..................................................ATATTGTCATGTCACAGCAGTA..............................................................................................	22	1	1	246.00	246	212	4	1	29	0	0
..................................................ATATTGTCCTGTCACAGCAGG...............................................................................................	21	1	1	238.00	238	75	80	77	0	4	2
..................................................ATAGTGTCCTGTCACAGCAGT...............................................................................................	21	1	1	224.00	224	179	32	13	0	0	0
..................................................TTATTGTCCTGTCACAGCAGT...............................................................................................	21	1	1	222.00	222	184	27	10	1	0	0
..................................................ATATTGGCCTGTCACAGCAGT...............................................................................................	21	1	1	217.00	217	49	111	52	5	0	0
........................................................................TTGTAAATTAAGCAATTGGTA.........................................................................	21	0	1	206.00	206	191	0	0	15	0	0
..................................................AAATTGTCCTGTCACAGCAGTA..............................................................................................	22	1	1	201.00	201	200	1	0	0	0	0
..................................................AGACTGTCCTGTCACAGCAGTA..............................................................................................	22	2	1	198.00	198	198	0	0	0	0	0
.............................................................................................CTGCTGAGCCGGGGCATTAAC....................................................	21	0	1	189.00	189	174	4	1	7	2	1
..................................................ATATTGTCCTGCCACAGCAGT...............................................................................................	21	1	1	185.00	185	55	68	53	1	6	2
..................................................AGAGTGTCCTGTCACAGCAGTA..............................................................................................	22	2	1	184.00	184	184	0	0	0	0	0
.................................................CATATTGTCCTGTCACAGCAGT...............................................................................................	22	1	1	178.00	178	134	23	15	2	3	1
..................................................AGATTGTACTGTCACAGCAGTA..............................................................................................	22	2	1	177.00	177	177	0	0	0	0	0
..................................................ATATTGTCCTGTCACAGCAGTTT.............................................................................................	23	1	1	172.00	172	3	72	59	0	36	2
..................................................ATATTGTACTGTCACAGCAGT...............................................................................................	21	1	1	170.00	170	105	39	21	2	0	3
..................................................ATATTGTCCTGGCACAGCAGT...............................................................................................	21	1	1	163.00	163	2	81	59	5	16	0
..................................................ATATTGTCCTGTCACAGCATT...............................................................................................	21	1	1	160.00	160	19	76	60	2	1	2
..................................................ATATTGCCCTGTCACAGCAGT...............................................................................................	21	1	1	149.00	149	8	86	46	3	1	5
..................................................ATATTGTCCTGTCACAGTAGTA..............................................................................................	22	1	1	144.00	144	134	1	1	8	0	0
..................................................ATATTGTCCTGTCACAGCAGA...............................................................................................	21	1	1	139.00	139	7	77	45	3	6	1
..................................................ATATTTTCCTGTCACAGCAGT...............................................................................................	21	1	1	135.00	135	105	10	15	0	0	5
..................................................ATATTGTCCCGTCACAGCAGTA..............................................................................................	22	1	1	131.00	131	113	1	1	16	0	0
..................................................ATATTGTCCTGTCACAGCCG................................................................................................	20	1	1	128.00	128	1	11	116	0	0	0
..................................................ATATTGTCCTGTCACAGCGGTA..............................................................................................	22	1	1	128.00	128	104	6	4	13	0	1
..................................................ATATTGTCCTGTCACAGCGGT...............................................................................................	21	1	1	127.00	127	7	70	41	3	2	4
..................................................ATATTGTCCTGTCCCAGCAGT...............................................................................................	21	1	1	124.00	124	1	39	83	1	0	0
..................................................ATATTGTCCTGTCAAAGCAGT...............................................................................................	21	1	1	122.00	122	53	48	19	2	0	0
..................................................ATATTGTCCTGTCACAGCAGCA..............................................................................................	22	1	1	120.00	120	83	4	5	27	1	0
..................................................AGAATGTCCTGTCACAGCAGTA..............................................................................................	22	2	1	117.00	117	117	0	0	0	0	0
..................................................AGATTGTCCTGTCACAGCAGGA..............................................................................................	22	2	1	117.00	117	116	0	0	1	0	0
..................................................ATCTTGTCCTGTCACAGCAGT...............................................................................................	21	1	1	117.00	117	77	23	13	1	0	3
....................................................ATTGTCCTGTCACAGCAGT...............................................................................................	19	0	1	116.00	116	84	3	5	0	17	7
..................................................ATATTGTCCTGTCACAGCCGTA..............................................................................................	22	1	1	114.00	114	4	5	40	65	0	0
..................................................ACATTGTCCTGTCACAGCAGT...............................................................................................	21	1	1	113.00	113	58	26	23	1	1	4
..................................................ATATTGTCCTGTCACATCAGTA..............................................................................................	22	1	1	113.00	113	88	3	10	11	1	0
..................................................ATAATGTCCTGTCACAGCAGT...............................................................................................	21	1	1	112.00	112	107	3	1	1	0	0
..................................................ATATTGCCCTGTCACAGCAGTA..............................................................................................	22	1	1	110.00	110	87	3	4	16	0	0
..................................................AGCTTGTCCTGTCACAGCAGTA..............................................................................................	22	2	1	109.00	109	109	0	0	0	0	0
....................................................AGTGTCCTGTCACAGCAGTA..............................................................................................	20	1	1	107.00	107	107	0	0	0	0	0
..................................................AGATTGTCCTGTCACAGCAG................................................................................................	20	1	1	107.00	107	95	9	3	0	0	0
..................................................ATATTGTCCTGTCACAGCAGTG..............................................................................................	22	1	1	106.00	106	82	7	3	9	5	0
...................................................TATTGTCCTGTCACAGCAG................................................................................................	19	0	1	104.00	104	0	1	0	0	103	0
..................................................ATATTGTCCTGTCACATCAGTC..............................................................................................	22	2	1	104.00	104	103	0	1	0	0	0
..................................................ATATTGTCCTGTAACAGCAGT...............................................................................................	21	1	1	103.00	103	55	19	25	3	0	1
..................................................AGATTGTCCTGTCAAAGCAGTA..............................................................................................	22	2	1	101.00	101	101	0	0	0	0	0
..................................................ATATTGTCCTTTCACAGCAGT...............................................................................................	21	1	1	101.00	101	7	22	66	0	3	3
..................................................ATATTGTCCTGTCGCAGCAGTA..............................................................................................	22	1	1	101.00	101	84	4	2	10	1	0
..................................................ATATTGTCCTGTCACACCAGT...............................................................................................	21	1	1	98.00	98	7	63	24	4	0	0
..................................................ATATTGTCCTGTTACAGCAGTA..............................................................................................	22	1	1	96.00	96	76	2	5	12	0	1
..................................................ATATTGTCATGTCACAGCAGT...............................................................................................	21	1	1	94.00	94	41	31	15	6	0	1
.............................................................................................CGGCTGAGCCGGGGCATTAACA...................................................	22	1	1	94.00	94	92	0	0	2	0	0
..................................................ATATTGTCCCGTCACAGCAGT...............................................................................................	21	1	1	91.00	91	17	43	26	2	2	1
..................................................ATATTGTCCTGTTACAGCAGT...............................................................................................	21	1	1	91.00	91	5	38	42	3	0	3
..................................................ATATTGTCTTGTCACAGCAGTA..............................................................................................	22	1	1	88.00	88	78	0	3	7	0	0
..................................................ATATTGTCCTGTCACAGCAGTAC.............................................................................................	23	1	1	88.00	88	73	8	3	0	4	0
..................................................ATATTGTCCTATCACAGCAGTA..............................................................................................	22	1	1	87.00	87	78	1	1	7	0	0
..................................................GTATTGTCCTGTCACAGCAGTA..............................................................................................	22	1	1	87.00	87	78	3	1	5	0	0
..................................................ATATTGTCCTGTCACAGCTGTA..............................................................................................	22	1	1	85.00	85	76	2	1	6	0	0
..................................................ATATCGTCCTGTCACAGCAGTA..............................................................................................	22	1	1	83.00	83	76	2	0	5	0	0
..................................................ATATTGTCCTGTCGCAGCAGT...............................................................................................	21	1	1	83.00	83	6	45	27	1	2	2
..................................................ATATTGTCCTGTCACAGCTGT...............................................................................................	21	1	1	81.00	81	18	42	21	0	0	0
..................................................ATATCGTCCTGTCACAGCAGT...............................................................................................	21	1	1	80.00	80	11	44	22	1	0	2
..................................................ATATTGTTCTGTCACAGCAGTA..............................................................................................	22	1	1	80.00	80	72	1	1	6	0	0
..................................................ATATTGTCCTGTCACGGCAGT...............................................................................................	21	1	1	80.00	80	18	36	21	3	0	2
..................................................ATATTGTCCTTTCACAGCAGTA..............................................................................................	22	1	1	80.00	80	68	4	3	4	1	0
..................................................ATATTGTCCTGTCACAGCATTA..............................................................................................	22	1	1	79.00	79	72	1	3	3	0	0
..................................................AGATTGTCCTGTAACAGCAGTA..............................................................................................	22	2	1	76.00	76	75	0	0	1	0	0
..................................................ATATTGTCCTGTCACGGCAGTA..............................................................................................	22	1	1	76.00	76	69	1	1	5	0	0
..................................................ATATTGTCTTGTCACAGCAGT...............................................................................................	21	1	1	76.00	76	17	32	22	4	1	0
..................................................GTATTGTCCTGTCACAGCAGT...............................................................................................	21	1	1	74.00	74	17	26	25	1	1	4
..................................................AGATTGGCCTGTCACAGCAGTA..............................................................................................	22	2	1	74.00	74	72	0	0	2	0	0
..................................................ATATTATCCTGTCACAGCAGT...............................................................................................	21	1	1	72.00	72	3	29	37	3	0	0
..................................................ATATTGTCCTGTCACAGCACT...............................................................................................	21	1	1	72.00	72	2	33	35	2	0	0
.....................................................TTGTCCTGTCACAGCAGTA..............................................................................................	19	0	1	72.00	72	68	0	1	1	2	0
..................................................ATATTATCCTGTCACAGCAGTA..............................................................................................	22	1	1	71.00	71	60	1	2	7	1	0
..................................................ATGTTGTCCTGTCACAGCAGT...............................................................................................	21	1	1	71.00	71	11	34	24	0	0	2
..................................................ATATTGACCTGTCACAGCAGT...............................................................................................	21	1	1	67.00	67	3	48	14	0	0	2
..................................................ATGTTGTCCTGTCACAGCAGTA..............................................................................................	22	1	1	66.00	66	52	3	2	8	1	0
..................................................AGATTGTCCTGTCACAGCAGTAT.............................................................................................	23	1	1	65.00	65	65	0	0	0	0	0
..................................................ATATTGTCCTGTCACTGCAGT...............................................................................................	21	1	1	64.00	64	35	14	11	2	1	1
..................................................ATATTGTCCTGCCAAAGCAGTA..............................................................................................	22	2	1	64.00	64	63	0	1	0	0	0
..................................................ATATTGTCCTCTCACAGCAGT...............................................................................................	21	1	1	61.00	61	6	24	30	1	0	0
..............................................GATCATATTGTCCTGTCACAGCAGTA..............................................................................................	26	3	1	60.00	60	59	0	0	1	0	0
..................................................ATATTCTCCTGTCACAGCAGT...............................................................................................	21	1	1	60.00	60	3	30	25	1	0	1
..................................................ATATTGTCCTGTCACAGTAGT...............................................................................................	21	1	1	60.00	60	16	29	13	1	0	1
..................................................ATATTGTCCTATCACAGCAGT...............................................................................................	21	1	1	59.00	59	14	24	18	0	1	2
..................................................ATATTGTCCTGTCACAACAGTA..............................................................................................	22	1	1	59.00	59	53	1	1	4	0	0
..................................................ATATTGTCCTGTCACAACAGT...............................................................................................	21	1	1	58.00	58	5	23	27	1	0	2
..................................................ATATTGTCCTGTCATAGCAGT...............................................................................................	21	1	1	56.00	56	6	34	13	1	2	0
..................................................ATATTGTCCTGTCACAGAAGT...............................................................................................	21	1	1	56.00	56	4	41	8	3	0	0
..................................................ATATTGTCCTGTCACCGCAG................................................................................................	20	1	1	55.00	55	0	8	47	0	0	0
..................................................ATAGTGTCCTGTCACAGCAGC...............................................................................................	21	2	1	54.00	54	47	6	1	0	0	0
................................................TCATATTGTCCTGTCACAGCAGTA..............................................................................................	24	1	1	51.00	51	51	0	0	0	0	0
..................................................ATATTGTCCTGTCACCGCAGTA..............................................................................................	22	1	1	51.00	51	6	4	19	22	0	0
..................................................ATATTGTCCTGTCACAGCAGAA..............................................................................................	22	1	1	51.00	51	39	4	2	6	0	0
..................................................AAATTGTCCTGTCACAGCAGT...............................................................................................	21	1	1	50.00	50	36	8	4	1	0	1
..................................................AGATTGTCCTGTCACAGCAGTC..............................................................................................	22	2	1	50.00	50	49	1	0	0	0	0
..................................................ATATTGTTCTGTCACAGCAGT...............................................................................................	21	1	1	50.00	50	17	18	13	0	1	1
..................................................ATATTGTCCTGTCATAGCAGTA..............................................................................................	22	1	1	50.00	50	44	1	1	4	0	0
..................................................ATATTGTCCTGTCACAGCCGTT..............................................................................................	22	2	1	49.00	49	0	8	38	3	0	0
..................................................ATATTGTCCTGTCACAGCAATA..............................................................................................	22	1	1	47.00	47	40	1	2	3	1	0
..................................................AGATTGTCCTGTCAAAGCAGGA..............................................................................................	22	3	1	47.00	47	47	0	0	0	0	0
..................................................ATATTGTCCTGTCACATCAG................................................................................................	20	1	1	46.00	46	1	20	25	0	0	0
..................................................ATATTGTACTGTCACAGCAGTC..............................................................................................	22	2	1	46.00	46	45	1	0	0	0	0
..................................................ATATTGTCCTGTCACAGCAT................................................................................................	20	1	1	45.00	45	1	20	21	0	3	0
..................................................TGATTGTCCTGTCACAGCAGT...............................................................................................	21	2	1	45.00	45	43	0	1	0	0	1
.................................................CGTATTGTCCTGTCACAGCAGTA..............................................................................................	23	2	1	43.00	43	43	0	0	0	0	0
..................................................ATATTGTCCTGTCACAGC..................................................................................................	18	0	1	43.00	43	16	12	11	0	4	0
..................................................ATATTGTAATGTCACAGCAGTA..............................................................................................	22	2	1	42.00	42	41	0	0	1	0	0
..................................................ATATTGACCTGTCACAGCAGTA..............................................................................................	22	1	1	42.00	42	29	3	2	8	0	0
..................................................ATATTGTACTGTCACATCAGTA..............................................................................................	22	2	1	42.00	42	42	0	0	0	0	0
..................................................ATATAGTCCTGTCACAGCAGTA..............................................................................................	22	1	1	41.00	41	36	0	0	5	0	0
..................................................ATATTGTCCGGTCACAGCAGT...............................................................................................	21	1	1	41.00	41	2	30	9	0	0	0
..................................................ATATTGTCCTGTCACCGCCGT...............................................................................................	21	2	2	40.50	81	0	4	77	0	0	0
..................................................ATATTCTCCTGTCACAGCAGTA..............................................................................................	22	1	1	40.00	40	34	1	1	4	0	0
..................................................ATATTGTCCTGTCACACCAGTA..............................................................................................	22	1	1	40.00	40	30	5	2	3	0	0
..................................................ATATTGTCCTGTCACAGCAGGC..............................................................................................	22	2	1	38.00	38	36	0	1	1	0	0
..................................................ATATTGTGCTGTCACAGCAGTA..............................................................................................	22	1	1	38.00	38	33	2	1	2	0	0
..................................................CTATTGTCCTGTCACAGCAGTA..............................................................................................	22	1	1	37.00	37	31	0	1	5	0	0
...................................................TGTTGTCCTGTCACAGCAGTA..............................................................................................	21	1	1	37.00	37	37	0	0	0	0	0
..................................................AGATTGTCCTGCCACAGCAGTA..............................................................................................	22	2	1	36.00	36	35	0	0	1	0	0
..................................................AGACTGTCCTGTCACAGCAGT...............................................................................................	21	2	1	35.00	35	29	3	3	0	0	0
..................................................AGATTGTCCTGTCACTGCAGTA..............................................................................................	22	2	1	35.00	35	35	0	0	0	0	0
..................................................AGATTTTCCTGTCACAGCAGTA..............................................................................................	22	2	1	35.00	35	35	0	0	0	0	0
...................................................CATTGTCCTGTCACAGCAGTA..............................................................................................	21	1	1	35.00	35	35	0	0	0	0	0
..................................................ATATTGTCCTGACACAGCAGT...............................................................................................	21	1	1	34.00	34	4	17	3	0	8	2
....................................................ATATTCCTGTCACAGCAGTA..............................................................................................	20	2	1	34.00	34	33	0	0	0	0	1
..................................................TTATTGTCCTGTCACAGCAGC...............................................................................................	21	2	1	33.00	33	31	2	0	0	0	0
.............................................................................................CTCCTGAGCCGGGGCATTAACA...................................................	22	1	1	33.00	33	33	0	0	0	0	0
..................................................ATATGGTCCTGTCACAGCAGTA..............................................................................................	22	1	1	32.00	32	29	1	0	1	1	0
..................................................ATATTGTCCTGTAAAAGCAGTA..............................................................................................	22	2	1	32.00	32	32	0	0	0	0	0
..................................................AGAGTGTCCTGTCACAGCAGT...............................................................................................	21	2	1	32.00	32	29	1	2	0	0	0
..................................................ATATTGGCCTGTCACAGCAG................................................................................................	20	1	1	32.00	32	0	21	11	0	0	0
..................................................ATATTGTCCTGGCACAGCAGTA..............................................................................................	22	1	1	32.00	32	5	6	4	13	4	0
.............................................CGATCATATTGTCCTGTCACAGCAGTA..............................................................................................	27	3	1	31.00	31	31	0	0	0	0	0
..................................................AGATTGTCATGTCACAGCAGTA..............................................................................................	22	2	1	31.00	31	29	1	0	1	0	0
...............................................ATCATATTGTCCTGTCACAGCAGTA..............................................................................................	25	2	1	31.00	31	31	0	0	0	0	0
..................................................ATATTGTCCTGTCACAGCACTA..............................................................................................	22	1	1	30.00	30	17	2	5	6	0	0
..................................................ATATTGTCCAGTCACAGCAGTA..............................................................................................	22	1	1	29.00	29	29	0	0	0	0	0
.............................................................................................CGGCTGAGCCGGGGCATTAAC....................................................	21	1	1	29.00	29	29	0	0	0	0	0
.................................................CATTTTGTCCTGTCACAGCAGTA..............................................................................................	23	2	1	29.00	29	29	0	0	0	0	0
..................................................ATATTGTCCGGTCACAGCAGTA..............................................................................................	22	1	1	29.00	29	22	1	1	5	0	0
..................................................CTATTGTCCTGTCACAGCAGT...............................................................................................	21	1	1	28.00	28	4	10	13	0	0	1
..................................................AGATTGTCCTGTCACAGCAGTAA.............................................................................................	23	2	1	28.00	28	28	0	0	0	0	0
..................................................ATACTGTCCTGTCACAGCAGC...............................................................................................	21	2	1	28.00	28	25	1	1	1	0	0
..................................................ATATTGTACTGTCACATCAGTC..............................................................................................	22	3	1	28.00	28	28	0	0	0	0	0
..................................................ATATTGTCCTGTCACAGCAGCT..............................................................................................	22	2	1	28.00	28	2	11	7	8	0	0
..................................................AGATTGTCCTGTCACAGCTGTA..............................................................................................	22	2	1	27.00	27	27	0	0	0	0	0
..................................................ATATTGTCCTGTCACAGCAAT...............................................................................................	21	1	1	26.00	26	4	9	10	1	1	1
..................................................ATATTGTCCTGTCTCAGCAGT...............................................................................................	21	1	1	26.00	26	4	14	6	1	0	1
..................................................ATATTGTCGTGTCACAGCAGTA..............................................................................................	22	1	1	26.00	26	22	0	1	3	0	0
..................................................ATATTGTCCTGTCACAGCAGTGT.............................................................................................	23	1	1	26.00	26	0	15	11	0	0	0
..................................................ATATTGTCCTGTCTCAGCAGTA..............................................................................................	22	1	1	26.00	26	18	1	1	6	0	0
..................................................ATATGGTCCTGTCACAGCAGT...............................................................................................	21	1	1	26.00	26	2	16	7	1	0	0
..................................................ATATTGTGCTGTCACAGCAGT...............................................................................................	21	1	1	25.00	25	5	13	7	0	0	0
..................................................ATATTGTCCTGTCCCAGCCGT...............................................................................................	21	2	1	25.00	25	0	2	22	1	0	0
..................................................ATATTGTCCTGTCACATCAGTT..............................................................................................	22	2	1	25.00	25	1	4	16	2	1	1
..................................................ATATTGTCCTGACACAGCAGTA..............................................................................................	22	1	1	25.00	25	23	0	0	0	2	0
.................................................CATATTGTCCTGTCACAGCAGC...............................................................................................	22	2	1	25.00	25	24	1	0	0	0	0
...................................................TATTGTCCTGTCACAGCAGTT..............................................................................................	21	1	1	25.00	25	0	2	0	0	23	0
..................................................ATATTGTCCTGTCCCAGCAG................................................................................................	20	1	1	25.00	25	0	6	19	0	0	0
..................................................ATATAGTCCTGTCACAGCAGT...............................................................................................	21	1	1	24.00	24	8	8	7	0	0	1
..................................................ATATTGTCCTGTCACAGAAGTA..............................................................................................	22	1	1	24.00	24	14	1	0	9	0	0
..................................................ATATTGTCCTGTCACAGCAC................................................................................................	20	1	1	24.00	24	14	9	1	0	0	0
..................................................ATATTGTCCTGCCACAGCAG................................................................................................	20	1	1	24.00	24	2	6	13	0	2	1
..................................................ATATTGTCCTGTGACAGCAGTA..............................................................................................	22	1	1	24.00	24	16	0	1	7	0	0
..................................................ATATTGTCGTGTCACAGCAGT...............................................................................................	21	1	1	24.00	24	9	11	3	0	0	1
..................................................ATATTGTCCTGTCACAGCAGTTG.............................................................................................	23	2	1	24.00	24	1	13	5	0	4	1
........................................................................TGGTAAATTAAGCAATTGGTA.........................................................................	21	1	1	24.00	24	24	0	0	0	0	0
..................................................AGATTGTACTGTCACAGCAGT...............................................................................................	21	2	1	24.00	24	23	0	1	0	0	0
..................................................ATATTGTCCTGTCACCGCAGTT..............................................................................................	22	2	1	23.00	23	0	6	17	0	0	0
..................................................ATATTGTCCTGGCACAGCAG................................................................................................	20	1	1	23.00	23	0	7	11	0	5	0
..................................................ATATTGTCCTGTCACAGCAGTAG.............................................................................................	23	1	1	23.00	23	5	7	2	1	8	0
..................................................ATTTTGTCCTGTCACAGCAGT...............................................................................................	21	1	1	23.00	23	6	10	4	1	0	2
..................................................ATATTGTCCTGTCCCAGCAGTA..............................................................................................	22	1	1	23.00	23	2	2	7	12	0	0
..................................................ATATTGTCCTCTCACAGCAGTA..............................................................................................	22	1	1	22.00	22	18	3	0	1	0	0
..................................................ATATTGTCCTGTCACAGCAGTTA.............................................................................................	23	2	1	22.00	22	1	8	7	1	5	0
..................................................ATATTGTCCTGTCAAAGCAGGA..............................................................................................	22	2	1	21.00	21	20	0	0	1	0	0
..................................................ATATTGTCCTGTCACACCAG................................................................................................	20	1	1	21.00	21	1	11	9	0	0	0
..................................................ATATTGGCCTGTCACAGCAGG...............................................................................................	21	2	1	21.00	21	0	7	14	0	0	0
..................................................ATAATGTCCTGTCACAGCAGC...............................................................................................	21	2	1	21.00	21	21	0	0	0	0	0
..................................................AGATTGTCCTGTCACAGCATTA..............................................................................................	22	2	1	20.00	20	20	0	0	0	0	0
..................................................AGATTGTCCTGTCACAGCAGTT..............................................................................................	22	2	1	20.00	20	17	1	1	1	0	0
..................................................ATATTGTCCTTTCACAGCAG................................................................................................	20	1	1	20.00	20	0	1	19	0	0	0
..................................................AGATTGTCCTGTAAAAGCAGTA..............................................................................................	22	3	1	20.00	20	20	0	0	0	0	0
..................................................ATATTGTACTGTCACATCAGT...............................................................................................	21	2	1	20.00	20	18	2	0	0	0	0
..................................................AGATTGGCCTGTCACAGCAGT...............................................................................................	21	2	1	19.00	19	14	2	3	0	0	0
.................................................CACATTGTCCTGTCACAGCAGTA..............................................................................................	23	2	1	19.00	19	19	0	0	0	0	0
..................................................ATATTGGCCTGTCACAGCAGC...............................................................................................	21	2	1	19.00	19	14	4	1	0	0	0
..................................................ATATTGTCCTGTCACAGCATA...............................................................................................	21	2	1	19.00	19	15	1	3	0	0	0
..................................................ATATTGTCCTGTTACATCAGT...............................................................................................	21	2	1	19.00	19	0	2	17	0	0	0
..................................................ATATTGTCCTGTCACAGGAGT...............................................................................................	21	1	1	19.00	19	0	10	8	0	0	1
............................................................................................ACTGCTGAGCCGGGGCATTAAC....................................................	22	0	1	19.00	19	16	0	0	1	1	1
..................................................ATATTGTCCTGTCACATCATT...............................................................................................	21	2	1	19.00	19	0	8	11	0	0	0
......................................................TGTCCTGTCACAGCAGTA..............................................................................................	18	0	1	18.00	18	17	0	0	1	0	0
..................................................ATATTGTACTGTCACAGCAGGA..............................................................................................	22	2	1	18.00	18	18	0	0	0	0	0
..................................................ATATTGTCCTGTCACAGCAA................................................................................................	20	1	1	18.00	18	1	10	3	0	3	1
....................................................ATTGTCCTGTCACAGCAG................................................................................................	18	0	1	18.00	18	3	2	1	0	12	0
..................................................ATATTGTACTGTCACAGCAGC...............................................................................................	21	2	1	18.00	18	16	2	0	0	0	0
..................................................ATACTGTCCTGTCACAGCAG................................................................................................	20	1	1	18.00	18	9	7	2	0	0	0
.....................................................TTGTCCTGTCACAGCAGT...............................................................................................	18	0	1	18.00	18	11	1	0	0	6	0
..................................................ATATTGTCCCGTCACAGCAG................................................................................................	20	1	1	17.00	17	0	9	8	0	0	0
....................................................CTTGTCCTGTCACAGCAGTA..............................................................................................	20	1	1	17.00	17	17	0	0	0	0	0
...................................................TATTGTCCTGTCACAGCAGTAA.............................................................................................	22	1	1	17.00	17	2	0	0	0	15	0
...................................................TATTGTCCTGTCACAGCAGC...............................................................................................	20	1	1	17.00	17	16	0	0	0	1	0
..................................................ATATTGTCCTGTCACAGCT.................................................................................................	19	1	1	17.00	17	0	15	2	0	0	0
..................................................AGATCGTCCTGTCACAGCAGTA..............................................................................................	22	2	1	16.00	16	16	0	0	0	0	0
..................................................ATATTGTCCTGTCACAGCCGC...............................................................................................	21	2	1	16.00	16	0	14	2	0	0	0
................................................TCATATTGTCCTGTCACAGCAGT...............................................................................................	23	1	1	16.00	16	16	0	0	0	0	0
..................................................ATATTGCCCTGTCACAGCAG................................................................................................	20	1	1	16.00	16	2	10	3	0	1	0
..................................................AGCTTGTCCTGTCACAGCAGT...............................................................................................	21	2	1	16.00	16	16	0	0	0	0	0
..................................................GTATTGTCCTGTCACAGCAG................................................................................................	20	1	1	16.00	16	1	9	5	0	1	0
..................................................ATATTGTCCTGTCACAGCGG................................................................................................	20	1	1	16.00	16	1	9	4	0	1	1
.................................................TATATTGTCCTGTCACAGCAGTA..............................................................................................	23	1	1	16.00	16	13	0	0	0	3	0
..................................................AGATTGTCCTGTCAAAGCAGT...............................................................................................	21	2	1	16.00	16	16	0	0	0	0	0
..................................................AGATTGTCCTGTCACATCAGT...............................................................................................	21	2	1	16.00	16	2	8	6	0	0	0
..................................................ATATTGTCCTGTCACAGCCTT...............................................................................................	21	2	1	16.00	16	0	8	8	0	0	0
....................................................ATTTTCCTGTCACAGCAGTA..............................................................................................	20	1	1	15.00	15	15	0	0	0	0	0
..................................................TGCTTGTCCTGTCACAGCAGTA..............................................................................................	22	3	1	15.00	15	15	0	0	0	0	0
..................................................GGATTGTCCTGTCACAGCAGTA..............................................................................................	22	2	1	15.00	15	15	0	0	0	0	0
..................................................ATATTGTCCTGTCACAGCAGTAAA............................................................................................	24	2	1	15.00	15	1	2	7	1	4	0
..................................................AGATTGCCCTGTCACAGCAGTA..............................................................................................	22	2	1	15.00	15	15	0	0	0	0	0
..................................................ATTTTGTCCTGTCACAGCAGTA..............................................................................................	22	1	1	15.00	15	15	0	0	0	0	0
..................................................ATATTGTCCTGTCACAGCAGTATT............................................................................................	24	0	1	15.00	15	5	6	0	0	4	0
...................................................TACTGTCCTGTCACAGCAGTA..............................................................................................	21	1	1	15.00	15	15	0	0	0	0	0
..................................................ATATTGTCCTGTCCCCGCAGT...............................................................................................	21	2	1	15.00	15	0	1	13	1	0	0
..................................................ATATTGTCCTGTCACAGGAGTA..............................................................................................	22	1	1	15.00	15	11	0	0	4	0	0
..................................................AGATTGTCCTGTCACTGCAGT...............................................................................................	21	2	1	15.00	15	14	0	1	0	0	0
..................................................ATATTGTCCTGGCACAGCAGG...............................................................................................	21	2	1	15.00	15	0	7	8	0	0	0
..................................................ATATTGTCCTGTCACAGCAGGT..............................................................................................	22	2	1	15.00	15	1	5	8	1	0	0
..................................................ATATTGTCCTGTCACATCAT................................................................................................	20	2	1	15.00	15	0	7	8	0	0	0
..................................................AGATTGTCCTGTTACAGCAGTA..............................................................................................	22	2	1	14.00	14	14	0	0	0	0	0
..................................................ATATTGTCCTGTCACTGCTGTA..............................................................................................	22	2	1	14.00	14	14	0	0	0	0	0
..................................................ATATTGTCCTGTCACATCAGC...............................................................................................	21	2	1	14.00	14	8	5	1	0	0	0
..................................................ATATTGTCCTGTCACAGTAG................................................................................................	20	1	1	14.00	14	1	7	6	0	0	0
..................................................ATATTGTCCAGTCACAGCAGT...............................................................................................	21	1	1	14.00	14	4	7	3	0	0	0
....................................................ATCGTCCTGTCACAGCAGTA..............................................................................................	20	1	1	14.00	14	14	0	0	0	0	0
..................................................AGATTGTCCTGTCGCAGCAGTA..............................................................................................	22	2	1	14.00	14	14	0	0	0	0	0
..................................................AGATTGTCCCGTCACAGCAGTA..............................................................................................	22	2	1	14.00	14	14	0	0	0	0	0
..................................................ATATTGTCCTGTCACAACAG................................................................................................	20	1	1	14.00	14	0	4	9	0	0	1
..................................................ATATTGGCCTGCCACAGCAGT...............................................................................................	21	2	1	13.00	13	0	10	2	1	0	0
..................................................AGATTGTACTGTCAAAGCAGTA..............................................................................................	22	3	1	13.00	13	13	0	0	0	0	0
..................................................ATATTGGCCTGTCACAGCCGT...............................................................................................	21	2	1	13.00	13	0	5	8	0	0	0
..................................................AGATTGTCCTGTCACATCAGTC..............................................................................................	22	3	1	13.00	13	13	0	0	0	0	0
..................................................ACATTGTCCTGTCACAGCAG................................................................................................	20	1	1	13.00	13	1	9	3	0	0	0
....................................................AGTGTCCTGTCACAGCAGT...............................................................................................	19	1	1	13.00	13	13	0	0	0	0	0
..................................................ATATTGTCCTGTCACAGCGGTT..............................................................................................	22	2	1	13.00	13	0	12	1	0	0	0
..................................................ATATTGTCCTGTAAAAGCAGT...............................................................................................	21	2	1	13.00	13	10	2	1	0	0	0
.............................................................................................CTGCTGAGCCGGGGCATTAA.....................................................	20	0	1	13.00	13	8	0	2	3	0	0
..................................................AGATTGTCCTGTCACAGCTGT...............................................................................................	21	2	1	13.00	13	10	3	0	0	0	0
..................................................ATATTGTCCTGTCGCAGCAG................................................................................................	20	1	1	12.00	12	0	6	6	0	0	0
..................................................AGATTGTCCTGTCACAGTAGTA..............................................................................................	22	2	1	12.00	12	12	0	0	0	0	0
..................................................ATATTGTCCTATCACAGCAG................................................................................................	20	1	1	12.00	12	1	2	9	0	0	0
..................................................ATATTGTCCTGTCACAGCAGTCT.............................................................................................	23	1	1	12.00	12	5	4	3	0	0	0
..................................................ATATTGTCCTGTCCCAGCAGTT..............................................................................................	22	2	1	12.00	12	0	3	8	1	0	0
..................................................AGAATGTCCTGTCACAGCAGT...............................................................................................	21	2	1	12.00	12	12	0	0	0	0	0
..................................................AGATTGTCCTATCACAGCAGTA..............................................................................................	22	2	1	12.00	12	12	0	0	0	0	0
.............................................................................................CTGCTGAGCCGGGGCATTAACAA..................................................	23	1	1	12.00	12	11	0	0	1	0	0
..................................................AGATTGTCCTGTAACAGCAGT...............................................................................................	21	2	1	12.00	12	12	0	0	0	0	0
..................................................ATATTGTCCTGTCAGAGCAGTA..............................................................................................	22	1	1	12.00	12	8	2	1	1	0	0
..................................................ATATTGTCCTGTCAAAGCAGC...............................................................................................	21	2	1	12.00	12	12	0	0	0	0	0
..................................................ATATTGTCCTGTCACAGCTA................................................................................................	20	2	1	12.00	12	12	0	0	0	0	0
..................................................ATATTGTCCTGTCACAGCATTT..............................................................................................	22	2	1	11.00	11	0	8	2	1	0	0
..................................................ATATTGTACTGTAACAGCAGTA..............................................................................................	22	2	1	11.00	11	11	0	0	0	0	0
..................................................ACATTGTCCTGTCACAGCAGC...............................................................................................	21	2	1	11.00	11	10	1	0	0	0	0

TAACCTATAGGTAGATAGTTAGTTGCGCAGATAATATCGCGAACGGTCACTATAACAGGACAGTGTCGTCATAACATTTAATTCGTTAACCATGACGACTCGGCCCCGTAATTGTAACAACTCGCAGCAATCGTTGGTCTTCTTTAGATTAGCTCAGCTGATACGC **********************************..(((((((.(((((.((.(((((((...((((((((((((.......)))....)))))))))...))))))).)).))))).)))))))....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head	V049 head
............................................................................................TGACGACTCGGCCCCGTAATT.....................................................	21	0	1	1.00	1	1	0
........................................................................................ACCATGACGACTCGGCCCCGTA........................................................	22	0	1	1.00	1	0	1
............................................................................................TGACAACTCGGCCCCGTTATT.....................................................	21	2	3	0.33	1	1	0

Species	Coordinate	ID	Type	Alignment
droMoj3	scaffold_6540:25791515-25791680 +	dmo_3	confident	ATT--------------------GGATATC--CATC-TA-TC--------------------------AATCAAC--G-CGTCTATTA--T-AGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTAAA-TTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAGA--------A-------G-AAATCTAATC-----G--AGT----------------------------------------------------------------------------------CGACTATGC---------G
droVir3	scaffold_12855:6810189-6810383 -	dvi-mir-1000	Known_mirbase	ATT-------------------GTGATA----TAT--------------------------------------------CGTCG---ATCGTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTA-CGTTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAAAA-------AGC-----------------------------CAGAAAAGCCACAAATCAGAGAT----GAC--AAA--TTCGGTTTCGGGAAGGGGACA---------TAAAACAACTATTC------------------C
droGri2	scaffold_14906:2964627-2964843 -	dgr_8	confident	ATACT-----------------TGGATA----TATA----TATA--------------------------TA--T-----ATTT--AATCGTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTTAA-TTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTTGCTAGCAACTAAAAAGCGAGCAGCGAGCAGC------------GAGA--AGCAG------------------AGAA----GCAAAAAG--TTC---TTCGAGTACAAGAAAATCCTCGTGTCAAAAA---------ACTATGC---------G
droWil2	scf2_1100000004943:14638689-14638849 +	dwi_7	confident	TCC--------------------TGCTATC--CATC----------------------------------T--------AACAA--AA--G-AGAGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATAGTAACA-TAT-T--CATTTCGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCTGTGGCAACGAG--------CG---------------------GAAA--ACTCT------------------A-----------------------CT----------------------------------TCTGATGATGATAATAATGAT
dp5	2:21158133-21158336 -	dps-mir-1000	Known_mirbase	ATCTATGTGGAAATGCATATAGAAGAT--------A----CATATATATCGAATTACATACGGCGTCGGATCGGA--G-CAGATGAGA--G-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAAG--------A-------G-AAGGAGAAGCT-ACAA--AGCTA------------------CAA-----------------------------------------------------------------------------A
droPer2	scaffold_3:3932620-3932825 -	dpe_6	confident	ATCTATGTGGAAATGCATATAGAAGAT--------A----CATATATATCGAATTACATACGGCGTCGGATCGGA--G-CAGATGAGA--G-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAAG--------AGCTACAAA----GCTA--C-GGAAA-AATGCT------------------A-----------C-------------------------------------------------------------------A
droAna3	scaffold_13340:3670403-3670547 -	dan_4	confident	AAA--------------------GGATA----TATGGTGTCATA--------------------------T-------------------A-GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGG---------------AG-------------GAAA--AGTCA------------------AGGA-----------------------------------------------------------------------------
droBip1	scf7180000396712:682190-682337 +			ACT---------------ATAAAGGATA----TAC--------------------------------------------CGTCA--TAT-A-GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGG---------------AG-------------GAAA--AGTCA------------------AGGA-----------------------------------------------------------------------------
droKik1	scf7180000302639:1623482-1623662 +			ATA-------------------AGGATA----TATC------------------------------------------GCG-CA--AATCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CAGCG------------------GAAA--ACTC---------CGAAACTCAAAGGAAAACGCACCGAACTTTC---TT---------------------------------------CTTTCC---------G
droFic1	scf7180000454055:1331118-1331285 -			A---------------------------------------------------------------------------------------TCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGAAA-ACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGACA-GGCG-GCGGCGGCAAG-------------GAAA--AGCCG------------------AGGAAAACGCACCAAGCTTTC---AT----------------------------------TCCGGCTTTGT---------G
droEle1	scf7180000491280:3122811-3122968 -			TAT--------------------ATTTATATATATA----TATATATAT-G-------------------TA--TACACTACGA--AATCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTTTATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG-------------------------------GAAA--ACCC----------------------------------------------------------------------------------------------------
droRho1	scf7180000779501:511391-511521 +			A---------------------------------------------------------------------------------------TCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------AGGCGGCCAG-------------GAAA--AGCCG------------------AC------------------------------------------------------------------------------G
droBia1	scf7180000302136:2260816-2260960 -			TCCC------------------AGAATA----CATC-------------------------------------------CATCG--AATCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAC--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGA-GGCG-GCGGCGGCAA---------------------------------------------------------------------------------------------------------------------------G
droTak1	scf7180000415257:294611-294760 -			A----------------------GGATA----TATA-CGCCATG--------------------------TA--C-----ACAA--AATCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGA-GGCG-GCGGCGGCAA---------------------------------------------------------------------------------------------------------------------------G
droEug1	scf7180000409798:1136835-1137019 +			AAA-------------------AGGATA----TATA----TATA--------------------------TA--T--GCCACAA--AATCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAATACTATATCTTATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------TGGCGGCAAG-------------GAAA--ACCCG------------------AGGAAAACGCACCAAGCTTTC---TT---------------------------------TTCC------------------
dm3	chr3R:21414574-21414704 -	dme-mir-1000	Known_mirbase	ATA-------------------------------TA----CATA--------------------------TA--T--ACCATGA--AATCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CG-----------------------------------------------------------------------------------------------------------------------------------
droSim2	3r:20926920-20927106 -	dsi-mir-1000	Known_mirbase	G------------------------ATA----TATA----CATA--------------------------TA--T--ACCGTGA--AATCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTTACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGACAG-------------GAAA--ACCTG------------------AGAAAAACGCACCAAGCTTTA---TT---------------------------------TTCCGGCTTTGT---------G
droSec2	scaffold_13:202491-202642 -	dse_8	confident	ATA-------------------------------TG----CATA--------------------------TA--T--ACCATGA--AATCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGACAG-------------GAAA--ACCTG------------------AGAA-----------------------------------------------------------------------------
droYak3	3R:25064553-25064714 +	dya_5	confident	--------------------------------------------------------------------------------------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------AGGCGGCCAG-------------GAAAAAAGGCG------------------AGAAAAACGCACCAAGCTTTC---TT---------------------------------TTCCGGCTTTGT---------G
droEre2	scaffold_4820:6627801-6627989 +	der_7	confident	G------------------------ATA----TATA---CCATG--------------------------TA--T--ACCATGA--AATCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGTCAG-------------GAAAA-AAGCG------------------AGAAAAACGCACCAAGCTTTC---TT---------------------------------TTCCGGCTTTGT---------G

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

ATT--------------------GGATATC--CATC-TA-TC--------------------------AATCAAC--G-CGTCTATTA--T-AGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTAAA-TTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAGA--------A-------G-AAATCTAATC-----G--AGT----------------------------------------------------------------------------------CGACTATGC---------G	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................ATATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	22	1	159680.00	159680	1570	7457	1371	1732	147406	144
..........................................................................................................ATATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	21	1	74825.00	74825	2645	1430	19243	26365	21652	3490
..........................................................................................................ATATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	20	1	8361.00	8361	1225	19	3012	3479	523	103
..........................................................................................................ATATTGTCCTGTCACAGCAGC.....................................................................................................................................................................................................................	21	1	4145.00	4145	2	6	47	151	3937	2
..........................................................................................................ATATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	22	1	3541.00	3541	244	48	1217	1746	163	123
..........................................................................................................ATATTGTCCTGTCACAGCA.......................................................................................................................................................................................................................	19	1	1337.00	1337	57	4	520	731	15	10
..........................................................................................................ATATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	23	1	759.00	759	75	59	160	240	211	14
..........................................................................................................ATATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	23	1	741.00	741	153	10	56	71	449	2
............................................................................................................ATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	20	1	723.00	723	6	2	0	0	715	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTC....................................................................................................................................................................................................................	22	1	702.00	702	1	21	39	37	604	0
.........................................................................................................................................................CTGCTGAGCCGGGGCATTAACA.....................................................................................................................................................................	22	1	637.00	637	4	99	13	17	502	2
...........................................................................................................TATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	21	1	619.00	619	99	3	3	3	511	0
...........................................................................................................TATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	20	1	279.00	279	193	1	4	11	68	2
..........................................................................................................ATATTGTCCTGTCACAGCAGG.....................................................................................................................................................................................................................	21	1	238.00	238	4	0	77	80	75	2
................................................................................................................................TTGTAAA-TTAAGC--AATTG-GTA...........................................................................................................................................................................................	21	1	206.00	206	0	15	0	0	191	0
.........................................................................................................................................................CTGCTGAGCCGGGGCATTAAC......................................................................................................................................................................	21	1	189.00	189	2	7	1	4	174	1
..........................................................................................................ATATTGTCCTGTCACAGCAGA.....................................................................................................................................................................................................................	21	1	139.00	139	6	3	45	77	7	1
............................................................................................................ATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	19	1	116.00	116	17	0	5	3	84	7
..........................................................................................................ATATTGTCCTGTCACAGCAGTG....................................................................................................................................................................................................................	22	1	106.00	106	5	9	3	7	82	0
...........................................................................................................TATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	19	1	104.00	104	103	0	0	1	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAC...................................................................................................................................................................................................................	23	1	88.00	88	4	0	3	8	73	0
.............................................................................................................TTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	19	1	72.00	72	2	1	1	0	68	0
..........................................................................................................ATATTGTCCTGTCACAGCAT......................................................................................................................................................................................................................	20	1	45.00	45	3	0	21	20	1	0
..........................................................................................................ATATTGTCCTGTCACAGC........................................................................................................................................................................................................................	18	1	43.00	43	4	0	11	12	16	0
..........................................................................................................ATATTGTCCTGTCACAGCAGGC....................................................................................................................................................................................................................	22	1	38.00	38	0	1	1	0	36	0
..........................................................................................................ATATTGTCCTGTCACAGCAGCT....................................................................................................................................................................................................................	22	1	28.00	28	0	8	7	11	2	0
...........................................................................................................TATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	21	1	25.00	25	23	0	0	2	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAC......................................................................................................................................................................................................................	20	1	24.00	24	0	0	1	9	14	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTTG...................................................................................................................................................................................................................	23	1	24.00	24	4	0	5	13	1	1
..........................................................................................................ATATTGTCCTGTCACAGCAGTAG...................................................................................................................................................................................................................	23	1	23.00	23	8	1	2	7	5	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTTA...................................................................................................................................................................................................................	23	1	22.00	22	5	1	7	8	1	0
..........................................................................................................ATATTGTCCTGTCACAGCATA.....................................................................................................................................................................................................................	21	1	19.00	19	0	0	3	1	15	0
........................................................................................................................................................ACTGCTGAGCCGGGGCATTAAC......................................................................................................................................................................	22	1	19.00	19	1	1	0	0	16	1
..............................................................................................................TGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	18	1	18.00	18	0	1	0	0	17	0
..........................................................................................................ATATTGTCCTGTCACAGCAA......................................................................................................................................................................................................................	20	1	18.00	18	3	0	3	10	1	1
............................................................................................................ATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	18	1	18.00	18	12	0	1	2	3	0
.............................................................................................................TTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	18	1	18.00	18	6	0	0	1	11	0
...........................................................................................................TATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	22	1	17.00	17	15	0	0	0	2	0
...........................................................................................................TATTGTCCTGTCACAGCAGC.....................................................................................................................................................................................................................	20	1	17.00	17	1	0	0	0	16	0
..........................................................................................................ATATTGTCCTGTCACAGCT.......................................................................................................................................................................................................................	19	1	17.00	17	0	0	2	15	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAAA..................................................................................................................................................................................................................	24	1	15.00	15	4	1	7	2	1	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTATT..................................................................................................................................................................................................................	24	1	15.00	15	4	0	0	6	5	0
..........................................................................................................ATATTGTCCTGTCACAGCAGGT....................................................................................................................................................................................................................	22	1	15.00	15	0	1	8	5	1	0
.........................................................................................................................................................CTGCTGAGCCGGGGCATTAA.......................................................................................................................................................................	20	1	13.00	13	0	3	2	0	8	0
.........................................................................................................................................................CTGCTGAGCCGGGGCATTAACAA....................................................................................................................................................................	23	1	12.00	12	0	1	0	0	11	0
..........................................................................................................ATATTGTCCTGTCACAGCTA......................................................................................................................................................................................................................	20	1	12.00	12	0	0	0	0	12	0

droVir3

ATT-------------------GTGATA----TAT--------------------------------------------CGTCG---ATCGTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTA-CGTTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAAAA-------AGC-----------------------------CAGAAAAGCCACAAATCAGAGAT----GAC--AAA--TTCGGTTTCGGGAAGGGGACA---------TAAAACAACTATTC------------------C	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
..........................................................................................................ATATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	21	1	41284.00	41284	88	767	1116	1205	0	3	0	0	1	1	2	0	0	0	4571	2689	1154	2784	3496	1329	7	2646	3279	5	0	2	3	4	23	2	11	18	1	12	1	0	1	9	2	13	1	1	0	0	0	0	1	0	1	7	4	13	7	10	12	4	6	20	142	885	13430	1394	0	0	2	0	3	1	2	74	1	7	6	0	0	1	2	0	2
..........................................................................................................ATATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	22	1	15885.00	15885	85	442	546	2912	0	2	0	0	0	0	0	0	0	0	1893	964	584	1349	899	437	1	860	1486	0	3	2	0	3	13	7	5	14	0	0	0	0	0	8	0	0	1	4	0	0	0	6	0	6	8	56	80	161	81	169	135	14	6	5	749	652	1128	58	0	1	2	0	0	3	1	30	3	2	3	5	1	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	20	1	8105.00	8105	305	2695	950	39	0	0	0	0	0	0	0	0	0	0	219	194	61	108	185	67	1	113	350	0	1	0	0	0	1	3	1	3	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	5	2	3	2	0	1	7	13	7	2547	63	0	0	0	1	0	0	4	138	2	3	3	0	0	0	1	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	23	1	1810.00	1810	0	2	37	10	0	1	0	0	0	0	0	0	0	0	427	181	96	284	128	88	0	125	254	0	0	1	1	0	3	1	0	3	0	0	2	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	12	144	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	22	1	1688.00	1688	4	9	79	6	0	0	0	0	0	0	0	0	0	0	162	115	77	141	170	67	0	118	207	1	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	8	484	33	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCA.......................................................................................................................................................................................................................	19	1	1001.00	1001	4	111	45	1	0	0	0	0	0	0	0	0	0	0	50	37	18	20	41	21	0	43	36	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	563	3	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	23	1	749.00	749	0	2	46	19	0	0	0	0	0	0	0	0	0	0	146	77	35	93	48	42	0	76	132	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	4	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGC.....................................................................................................................................................................................................................	21	1	498.00	498	7	83	2	204	0	0	0	0	0	0	0	0	0	0	3	5	2	2	4	1	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	168	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGG.....................................................................................................................................................................................................................	21	1	170.00	170	13	103	2	6	0	0	0	0	0	0	0	0	0	0	0	4	0	0	3	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	3	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGC........................................................................................................................................................................................................................	18	1	141.00	141	9	74	4	2	0	0	0	0	0	0	0	0	0	0	4	3	3	2	4	1	0	3	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	2	0	17	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGA.....................................................................................................................................................................................................................	21	1	141.00	141	0	1	12	0	0	0	0	0	0	0	0	0	0	0	7	8	1	6	3	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	92	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	20	1	111.00	111	0	0	81	2	0	0	0	0	0	0	0	0	0	0	3	4	1	3	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CTGCTGAGCCGGGGCATTAACA.....................................................................................................................................................................	22	1	98.00	98	0	5	4	15	0	0	0	0	0	0	0	0	0	0	6	2	1	5	7	1	0	4	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	4	1	3	2	2	0	0	0	0	0	9	8	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTC....................................................................................................................................................................................................................	22	1	88.00	88	0	1	0	13	0	0	0	0	0	0	0	0	0	0	12	2	3	8	6	3	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	7	25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAC......................................................................................................................................................................................................................	20	1	87.00	87	5	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	19	1	79.00	79	0	7	71	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TTGTA-CGTTAAGC--AATTG-GTA...........................................................................................................................................................................................	21	1	71.00	71	0	0	0	26	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	2	1	1	0	0	1	0	0	11	16	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTGTTGAGCGTCGTTAGCAACC...............................................................................................................................................	22	1	67.00	67	0	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	21	1	60.00	60	0	0	40	4	0	0	0	0	0	0	0	0	0	0	5	0	2	1	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTGTTGAGCGTCGTTAGCAAC................................................................................................................................................	21	1	53.00	53	1	40	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	1	1	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................ATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	19	1	47.00	47	0	0	16	0	0	0	0	0	0	0	0	0	0	0	4	3	0	5	2	1	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAAA..................................................................................................................................................................................................................	24	1	46.00	46	0	0	1	0	0	0	0	0	0	0	0	0	0	0	16	3	0	11	1	1	0	3	4	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAG...................................................................................................................................................................................................................	23	1	39.00	39	0	0	2	0	0	0	0	0	0	0	0	0	0	0	5	5	2	7	0	3	0	3	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTG....................................................................................................................................................................................................................	22	1	35.00	35	2	6	5	2	0	0	0	0	0	0	0	0	0	0	3	0	1	1	2	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAA......................................................................................................................................................................................................................	20	1	31.00	31	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	1	2	2	0	3	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTTA...................................................................................................................................................................................................................	23	1	29.00	29	0	0	2	0	0	0	0	0	0	0	0	0	0	0	5	2	3	6	4	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................ATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	20	1	21.00	21	0	0	2	9	0	0	0	0	0	1	0	0	0	0	2	2	0	2	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CTGCTGAGCCGGGGCATTAAC......................................................................................................................................................................	21	1	16.00	16	0	1	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	1	0	0	0	3	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAT......................................................................................................................................................................................................................	20	1	16.00	16	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................GTCG---ATCGTTGCGCTTGCCAGTG..........................................................................................................................................................................................................................................	23	1	13.00	13	0	7	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAC...................................................................................................................................................................................................................	23	1	12.00	12	0	0	1	3	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	19	1	12.00	12	0	0	5	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................ATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	18	1	12.00	12	1	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCACC.....................................................................................................................................................................................................................	21	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCT.......................................................................................................................................................................................................................	19	1	11.00	11	2	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	22	1	10.00	10	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGCT....................................................................................................................................................................................................................	22	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................ATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	21	1	9.00	9	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TTGTA-CGTTAAGC--AATTG-GT............................................................................................................................................................................................	20	1	9.00	9	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................ACTGCTGAGCCGGGGCATTAAC......................................................................................................................................................................	22	1	9.00	9	0	1	1	3	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	21	1	8.00	8	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................ATCGTTGCGCTTGCCAGTG..........................................................................................................................................................................................................................................	19	1	8.00	8	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	18	1	8.00	8	0	0	3	0	0	0	0	0	0	0	0	0	0	0	1	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTGTTGAGCGTCGTTAGCAACCA..............................................................................................................................................	23	1	7.00	7	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCA.......................................................................................................................................................................................................................	18	1	6.00	6	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCC.......................................................................................................................................................................................................................	19	1	6.00	6	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TACTGCTGAGCCGGGGCATT.........................................................................................................................................................................	20	1	6.00	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCATC.....................................................................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTTG...................................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTATT..................................................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TACTGCTGAGCCGGGGCATTAAC......................................................................................................................................................................	23	1	4.00	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCG.......................................................................................................................................................................................................................	19	1	4.00	4	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CTGCTGAGCCGGGGCATTT........................................................................................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CTGCTGAGCCGGGGCATT.........................................................................................................................................................................	18	1	4.00	4	0	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................TCG---ATCGTTGCGCTTGCCAGTG..........................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTCA...................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTGTTGAGCGTCGTTAGC...................................................................................................................................................	18	1	4.00	4	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCATA.....................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

ATACT-----------------TGGATA----TATA----TATA--------------------------TA--T-----ATTT--AATCGTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTTAA-TTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTTGCTAGCAACTAAAAAGCGAGCAGCGAGCAGC------------GAGA--AGCAG------------------AGAA----GCAAAAAG--TTC---TTCGAGTACAAGAAAATCCTCGTGTCAAAAA---------ACTATGC---------G	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..........................................................................................................ATATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	21	1	731.00	731	371	360
..........................................................................................................ATATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	22	1	240.00	240	229	11
..........................................................................................................ATATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	20	1	90.00	90	86	4
...........................................................................................................TATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	20	1	26.00	26	26	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	23	1	24.00	24	24	0
...........................................................................................................TATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	21	1	18.00	18	18	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	22	1	16.00	16	15	1
..........................................................................................................ATATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	23	1	12.00	12	10	2
...........................................................................................................TATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	19	1	10.00	10	10	0
..........................................................................................................ATATTGTCCTGTCACAGCA.......................................................................................................................................................................................................................	19	1	7.00	7	7	0
.............................................................................................................TTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	18	1	3.00	3	3	0
.............................................................................................................TTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	19	1	3.00	3	3	0
.........................................................................................................................................................CTGCTGAGCCGGGGCATTAACA.....................................................................................................................................................................	22	1	2.00	2	1	1
............................................................................................................ATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	19	1	2.00	2	2	0
...........................................................................................................TATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	22	1	2.00	2	2	0
..........................................................................................................ATATTGTCCTGTCACAGC........................................................................................................................................................................................................................	18	1	2.00	2	2	0
...................................................................................T--AATCGTTGCGCTTGCCAGTG..........................................................................................................................................................................................................................................	21	1	1.00	1	1	0
...........................................................................................................TATTGTCCTGTCACAGCAGTAAA..................................................................................................................................................................................................................	23	1	1.00	1	1	0
...........................................................................................................TATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	21	1	1.00	1	1	0
...........................................................................................................TATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	22	1	1.00	1	1	0
............................................................................................................ATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	20	1	1.00	1	1	0
........................................................................................................................................................ACTGCTGAGCCGGGGCATTAAC......................................................................................................................................................................	22	1	1.00	1	1	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAAA..................................................................................................................................................................................................................	24	1	1.00	1	1	0
..........................................................................................................ATATTGTCCTGTCACAGCAGA.....................................................................................................................................................................................................................	21	1	1.00	1	0	1
..........................................................................................................ATATTGTCCTGTCACAGCAGG.....................................................................................................................................................................................................................	21	1	1.00	1	0	1
...........................................................................................................TATTGTCCTGTCACAGCA.......................................................................................................................................................................................................................	18	1	1.00	1	1	0
.........................................................................................................GATATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	23	1	1.00	1	1	0
............................................................................................................ATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	20	1	1.00	1	1	0
.........................................................................................................................................................CTGCTGAGCCGGGGCATTAAC......................................................................................................................................................................	21	1	1.00	1	1	0
............................................................................................................ATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	18	1	1.00	1	1	0
..........................................................................................................ATATTGTCCTGTCACAGCTA......................................................................................................................................................................................................................	20	2	0.50	1	0	1

droWil2

TCC--------------------TGCTATC--CATC----------------------------------T--------AACAA--AA--G-AGAGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATAGTAACA-TAT-T--CATTTCGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCTGTGGCAACGAG--------CG---------------------GAAA--ACTCT------------------A-----------------------CT----------------------------------TCTGATGATGATAATAATGAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................ATATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	21	1	93112.00	93112	4343	1148	1661	17918	68042
..........................................................................................................ATATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	22	1	54414.00	54414	3931	886	43	35992	13562
..........................................................................................................ATATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	20	1	18088.00	18088	9449	567	41	360	7671
..........................................................................................................ATATTGTCCTGTCACAGCA.......................................................................................................................................................................................................................	19	1	4262.00	4262	247	51	4	38	3922
..........................................................................................................ATATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	23	1	1526.00	1526	22	29	3	700	772
..........................................................................................................ATATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	22	1	1162.00	1162	35	15	7	36	1069
................................................................................................................................TAGTAACA-TAT-T--CATTTCGTA...........................................................................................................................................................................................	21	1	626.00	626	141	1	0	412	72
..........................................................................................................ATATTGTCCTGTCACAGCAGC.....................................................................................................................................................................................................................	21	1	486.00	486	310	1	3	35	137
.........................................................................................................................................................CTGCTGAGCCGGGGCATTAACA.....................................................................................................................................................................	22	1	414.00	414	77	8	1	298	30
..........................................................................................................ATATTGTCCTGTCACAGCAGG.....................................................................................................................................................................................................................	21	1	399.00	399	360	0	2	6	31
..........................................................................................................ATATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	23	1	318.00	318	35	59	1	63	160
..........................................................................................................ATATTGTCCTGTCACAGCAGA.....................................................................................................................................................................................................................	21	1	272.00	272	3	0	2	5	262
..........................................................................................................ATATTGTCCTGTCACAGC........................................................................................................................................................................................................................	18	1	225.00	225	203	0	0	6	16
...........................................................................................................TATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	20	1	178.00	178	5	76	3	5	89
...........................................................................................................TATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	21	1	175.00	175	3	66	1	43	62
..........................................................................................................ATATTGTCCTGTCACAGCAC......................................................................................................................................................................................................................	20	1	152.00	152	144	0	0	0	8
............................................................................................................ATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	19	1	94.00	94	0	7	3	10	74
...........................................................................................................TATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	19	1	68.00	68	10	46	0	0	12
............................................................................................................ATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	20	1	65.00	65	0	3	0	34	28
...............................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------.....................................................................................................................................	24	1	58.00	58	52	0	0	1	5
.........................................................................................................................................................CTGCTGAGCCGGGGCATTAAC......................................................................................................................................................................	21	1	52.00	52	10	4	0	33	5
..........................................................................................................ATATTGTCCTGTCACAGCAGTC....................................................................................................................................................................................................................	22	1	37.00	37	2	1	0	18	16
..........................................................................................................ATATTGTCCTGTCACAGCAGTG....................................................................................................................................................................................................................	22	1	35.00	35	10	0	0	17	8
..........................................................................................................ATATTGTCCTGTCACAGCAA......................................................................................................................................................................................................................	20	1	30.00	30	4	1	0	0	25
...............................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------C....................................................................................................................................	25	1	29.00	29	22	1	0	4	2
...............................................................................AACAA--AA--G-AGAGCTTGCCAGTG..........................................................................................................................................................................................................................................	22	1	25.00	25	0	0	1	12	12
..........................................................................................................ATATTGTCCTGTCACAGCAGTAG...................................................................................................................................................................................................................	23	1	25.00	25	4	3	0	4	14
...............................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------A....................................................................................................................................	25	1	22.00	22	22	0	0	0	0
........................................................................................................................................................ACTGCTGAGCCGGGGCATTAAC......................................................................................................................................................................	22	1	21.00	21	14	1	0	4	2
...............................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGA..............................................................................................................................................	23	1	20.00	20	20	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCT.......................................................................................................................................................................................................................	19	1	16.00	16	7	0	0	0	9
............................................................................................................ATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	18	1	15.00	15	2	4	0	0	9
...........................................................................................................TATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	22	1	15.00	15	1	4	0	5	5
................................................................................ACAA--AA--G-AGAGCTTGCCAGTG..........................................................................................................................................................................................................................................	21	1	14.00	14	0	0	0	2	12
..........................................................................................................ATATTGTCCTGTCACAGCAT......................................................................................................................................................................................................................	20	1	13.00	13	1	0	0	1	11
.........................................................................................................................................................CTGCTGAGCCGGGGCATT.........................................................................................................................................................................	18	1	13.00	13	13	0	0	0	0
...............................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------CG---------------------G.............................................................................................................	27	1	13.00	13	5	0	0	8	0
..........................................................................................................ATATTGTCCTGTCACAGCG.......................................................................................................................................................................................................................	19	1	12.00	12	8	0	0	0	4
.............................................................................................................TTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	19	1	10.00	10	1	1	0	2	6
...................................................................................A--AA--G-AGAGCTTGCCAGTG..........................................................................................................................................................................................................................................	18	1	9.00	9	0	0	0	3	6
.....................................................................................................................................................CGTACTGCTGAGCCGGGGCATT.........................................................................................................................................................................	22	1	9.00	9	8	0	0	1	0
..........................................................................................................ATATTGTCCTGTCACAGCC.......................................................................................................................................................................................................................	19	1	9.00	9	3	0	0	0	6
..........................................................................................................ATATTGTCCTGTCACAGCAGTAC...................................................................................................................................................................................................................	23	1	8.00	8	3	0	0	0	5
...................................................................................................................................TAACA-TAT-T--CATTTCGTA...........................................................................................................................................................................................	18	1	8.00	8	5	0	0	3	0
..........................................................................................................ATATTGTCCTGTCACAGCATA.....................................................................................................................................................................................................................	21	1	7.00	7	0	0	0	6	1
.........................................................................................................................................................CTGCTGAGCCGGGGCATTAA.......................................................................................................................................................................	20	1	7.00	7	0	0	0	7	0
...............................................................................................................................................................................TTGTTGAGCGTCTGTGGCAAC................................................................................................................................................	21	1	7.00	7	7	0	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	7
............................................................................................................ATTGTCCTGTCACAGCAGTATA..................................................................................................................................................................................................................	22	1	6.00	6	0	0	0	3	3
............................................................................................................ATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	21	1	6.00	6	0	1	0	1	4
..........................................................................................................ATATTGTCCTGTCACAGT........................................................................................................................................................................................................................	18	1	6.00	6	0	0	0	2	4
...........................................................................................................TATTGTCCTGTCACAGCA.......................................................................................................................................................................................................................	18	1	6.00	6	0	5	0	0	1
...............................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------AA---------------------..............................................................................................................	26	1	5.00	5	5	0	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	22	1	5.00	5	0	3	0	0	2
...............................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------CG---------------------GA............................................................................................................	28	1	5.00	5	5	0	0	0	0
.................................................................................................................................AGTAACA-TAT-T--CATTTCGTA...........................................................................................................................................................................................	20	1	5.00	5	0	1	0	4	0
.........................................................................................................................................................CTGCTGAGCCGGGGCATTA........................................................................................................................................................................	19	1	5.00	5	3	0	0	1	1
.................................................................................CAA--AA--G-AGAGCTTGCCAGTG..........................................................................................................................................................................................................................................	20	1	5.00	5	0	0	0	0	5
..........................................................................................................ATATTGTCCTGTCACAGCAGTGA...................................................................................................................................................................................................................	23	1	5.00	5	1	1	0	0	3
.................................................................................................................................................ATTTCGTACTGCTGAGCCGGGGCATT.........................................................................................................................................................................	26	1	5.00	5	5	0	0	0	0
............................................................................................................ATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	21	1	4.00	4	0	1	0	2	1
.....................................................................................................................................................CGTACTGCTGAGCCGGGGCATTAAC......................................................................................................................................................................	25	1	4.00	4	4	0	0	0	0
...................................................................................................................................TAACA-TAT-T--CATTTCGTACTGCTGAGCC.................................................................................................................................................................................	28	1	4.00	4	4	0	0	0	0
.............................................................................................................TTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	18	1	4.00	4	1	1	0	0	2
..........................................................................................................................................................TGCTGAGCCGGGGCATTAACA.....................................................................................................................................................................	21	1	4.00	4	1	2	0	1	0
.......................................................................................................................................................TACTGCTGAGCCGGGGCATT.........................................................................................................................................................................	20	1	4.00	4	4	0	0	0	0
...............................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------AA---------------------A.............................................................................................................	27	1	3.00	3	3	0	0	0	0
......................................................................................................................................................GTACTGCTGAGCCGGGGCATTA........................................................................................................................................................................	22	1	3.00	3	2	0	0	1	0
...............................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------CA---------------------A.............................................................................................................	27	1	3.00	3	3	0	0	0	0
................................................................................................................................TAGTAACA-TAT-T--CATTTCGT............................................................................................................................................................................................	20	1	3.00	3	3	0	0	0	0
...............................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------G....................................................................................................................................	25	1	3.00	3	3	0	0	0	0

dp5

ATCTATGTGGAAATGCATATAGAAGAT--------A----CATATATATCGAATTACATACGGCGTCGGATCGGA--G-CAGATGAGA--G-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAAG--------A-------G-AAGGAGAAGCT-ACAA--AGCTA------------------CAA-----------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................ATATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	21	1	24735.00	24735	7	1982	2173	6583	2055	10327	1506	0	0	102
..........................................................................................................ATATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	22	1	24714.00	24714	8	1602	9515	3928	8201	1093	86	1	0	280
..........................................................................................................ATATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	20	1	2833.00	2833	8	1048	61	583	20	1029	38	0	0	46
..........................................................................................................ATATTGTCCTGTCACAGCAGC.....................................................................................................................................................................................................................	21	1	1600.00	1600	0	3	465	1087	5	37	3	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	22	1	850.00	850	0	123	10	325	60	287	39	0	0	6
..........................................................................................................ATATTGTCCTGTCACAGCA.......................................................................................................................................................................................................................	19	1	533.00	533	1	70	1	78	9	368	2	0	0	4
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAACA.....................................................................................................................................................................	22	1	343.00	343	0	16	51	6	95	25	4	0	0	146
..........................................................................................................ATATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	23	1	276.00	276	0	50	11	39	51	116	2	0	0	7
..........................................................................................................ATATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	23	1	263.00	263	0	86	37	119	8	11	0	0	0	2
...........................................................................................................TATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	20	1	196.00	196	0	139	4	37	5	8	2	0	0	1
...........................................................................................................TATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	21	1	173.00	173	0	118	23	18	11	2	0	0	0	1
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAAC......................................................................................................................................................................	21	1	139.00	139	0	1	54	3	25	9	2	0	0	45
..........................................................................................................ATATTGTCCTGTCACAGCAGTC....................................................................................................................................................................................................................	22	1	116.00	116	0	2	34	46	20	13	1	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	19	1	102.00	102	0	100	0	1	0	0	0	0	0	1
..........................................................................................................ATATTGTCCTGTCACAGC........................................................................................................................................................................................................................	18	1	90.00	90	1	7	2	73	0	0	0	0	0	7
..........................................................................................................ATATTGTCCTGTCACAGCAGG.....................................................................................................................................................................................................................	21	1	69.00	69	0	1	10	21	14	22	1	0	0	0
............................................................................................................ATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	19	1	58.00	58	0	23	4	31	0	0	0	0	0	0
............................................................................................................ATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	20	1	54.00	54	0	9	25	16	3	0	1	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGA.....................................................................................................................................................................................................................	21	1	45.00	45	0	4	3	10	2	24	1	0	0	1
..........................................................................................................ATATTGTCCTGTCACAGCAGTG....................................................................................................................................................................................................................	22	1	35.00	35	0	0	5	2	26	2	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAC...................................................................................................................................................................................................................	23	1	19.00	19	0	2	7	7	3	0	0	0	0	0
................................................................................................................................TTGTAAC--TTAAT--TATAGCCTA...........................................................................................................................................................................................	21	1	19.00	19	0	0	7	1	9	1	1	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	22	1	15.00	15	0	8	2	0	0	4	0	0	0	1
.............................................................................................................TTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	19	1	13.00	13	0	5	3	3	2	0	0	0	0	0
........................................................................................................................................................ACTGCTGGGTCGGGGCATTAAC......................................................................................................................................................................	22	1	13.00	13	0	0	5	0	2	3	0	0	0	3
...........................................................................................................TATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	21	1	11.00	11	0	8	0	1	0	1	1	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCTT......................................................................................................................................................................................................................	20	2	10.00	20	0	5	0	9	0	5	1	0	0	0
............................................................................................................ATTGTCCTGTCACAGCAGC.....................................................................................................................................................................................................................	19	1	8.00	8	0	0	0	8	0	0	0	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCA.......................................................................................................................................................................................................................	18	1	8.00	8	0	7	0	1	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCG.......................................................................................................................................................................................................................	19	1	8.00	8	0	0	0	4	0	4	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGCT....................................................................................................................................................................................................................	22	1	8.00	8	0	0	0	0	7	1	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAG...................................................................................................................................................................................................................	23	1	8.00	8	0	5	0	1	0	1	0	0	0	1
..........................................................................................................ATATTGTCCTGTCACAGCT.......................................................................................................................................................................................................................	19	2	7.50	15	0	5	0	5	0	5	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAA......................................................................................................................................................................................................................	20	1	7.00	7	0	1	0	1	0	4	0	0	0	1
..........................................................................................................ATATTGTCCTGTCACAGCAT......................................................................................................................................................................................................................	20	1	7.00	7	0	0	0	4	0	3	0	0	0	0
............................................................................................................ATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	18	1	7.00	7	0	3	1	3	0	0	0	0	0	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATTA........................................................................................................................................................................	19	1	7.00	7	0	0	0	0	3	4	0	0	0	0
.............................................................................................................TTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	18	1	7.00	7	0	4	0	1	1	0	1	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAAA..................................................................................................................................................................................................................	24	1	6.00	6	0	2	0	0	0	3	1	0	0	0
............................................................................................................ATTGTCCTGTCACAGCAGTATT..................................................................................................................................................................................................................	22	1	6.00	6	0	0	2	3	0	1	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAC......................................................................................................................................................................................................................	20	1	5.00	5	0	0	0	5	0	0	0	0	0	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATTT........................................................................................................................................................................	19	1	5.00	5	0	1	0	0	0	3	1	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGGT....................................................................................................................................................................................................................	22	1	5.00	5	0	0	0	1	4	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTATT..................................................................................................................................................................................................................	24	1	5.00	5	0	1	1	2	1	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCATA.....................................................................................................................................................................................................................	21	1	5.00	5	0	0	0	4	0	1	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCATC.....................................................................................................................................................................................................................	21	1	5.00	5	0	0	1	2	0	2	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTTG...................................................................................................................................................................................................................	23	1	4.00	4	0	1	0	1	0	1	0	0	0	1
..........................................................................................................ATATTGTCCTGTCACAGCAAC.....................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	4	0	0	0	0	0	0
.........................................................................................................GATATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	22	1	4.00	4	0	4	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACA..........................................................................................................................................................................................................................	16	1	4.00	4	0	0	0	0	0	0	0	0	0	4
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAA.......................................................................................................................................................................	20	1	3.00	3	0	0	1	0	1	0	0	0	0	1

droPer2

ATCTATGTGGAAATGCATATAGAAGAT--------A----CATATATATCGAATTACATACGGCGTCGGATCGGA--G-CAGATGAGA--G-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAAG--------AGCTACAAA----GCTA--C-GGAAA-AATGCT------------------A-----------C-------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................ATATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	21	1	54875.00	54875	74	513	420	12502	40531	835
..........................................................................................................ATATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	22	1	4888.00	4888	265	298	1169	1050	2069	37
..........................................................................................................ATATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	20	1	4244.00	4244	78	188	12	1162	2792	12
..........................................................................................................ATATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	22	1	1699.00	1699	0	26	6	304	1343	20
..........................................................................................................ATATTGTCCTGTCACAGCA.......................................................................................................................................................................................................................	19	1	914.00	914	0	16	4	347	545	2
..........................................................................................................ATATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	23	1	452.00	452	0	19	14	147	268	4
..........................................................................................................ATATTGTCCTGTCACAGCAGC.....................................................................................................................................................................................................................	21	1	418.00	418	5	0	0	64	347	2
..........................................................................................................ATATTGTCCTGTCACAGCAGG.....................................................................................................................................................................................................................	21	1	227.00	227	12	0	1	28	186	0
..........................................................................................................ATATTGTCCTGTCACAGCAGA.....................................................................................................................................................................................................................	21	1	157.00	157	0	1	0	39	116	1
..........................................................................................................ATATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	23	1	120.00	120	0	26	2	25	67	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTC....................................................................................................................................................................................................................	22	1	93.00	93	0	1	4	15	73	0
...........................................................................................................TATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	20	1	61.00	61	0	34	0	6	21	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAACA.....................................................................................................................................................................	22	1	55.00	55	12	0	15	26	1	1
..........................................................................................................ATATTGTCCTGTCACAGCAT......................................................................................................................................................................................................................	20	1	32.00	32	0	0	0	5	27	0
...........................................................................................................TATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	21	1	28.00	28	0	21	1	2	4	0
..........................................................................................................ATATTGTCCTGTCACAGCAC......................................................................................................................................................................................................................	20	1	21.00	21	1	0	0	8	12	0
...........................................................................................................TATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	19	1	19.00	19	0	17	0	0	2	0
..........................................................................................................ATATTGTCCTGTCACAGC........................................................................................................................................................................................................................	18	1	19.00	19	1	4	0	2	12	0
..........................................................................................................ATATTGTCCTGTCACAGCATG.....................................................................................................................................................................................................................	21	1	17.00	17	0	0	0	2	15	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTTA...................................................................................................................................................................................................................	23	1	16.00	16	0	3	0	2	11	0
............................................................................................................ATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	19	1	13.00	13	0	0	0	5	8	0
..........................................................................................................ATATTGTCCTGTCACAGCATC.....................................................................................................................................................................................................................	21	1	13.00	13	0	0	0	3	10	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTG....................................................................................................................................................................................................................	22	1	13.00	13	0	1	1	3	8	0
..........................................................................................................ATATTGTCCTGTCACAGCAA......................................................................................................................................................................................................................	20	1	12.00	12	0	1	0	2	9	0
..........................................................................................................ATATTGTCCTGTCACAGCT.......................................................................................................................................................................................................................	19	2	12.00	24	0	0	0	2	22	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATT.........................................................................................................................................................................	18	1	10.00	10	4	1	0	0	5	0
..........................................................................................................ATATTGTCCTGTCACAGCAGCT....................................................................................................................................................................................................................	22	1	10.00	10	0	0	0	2	8	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAAC......................................................................................................................................................................	21	1	9.00	9	5	0	3	1	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAAA..................................................................................................................................................................................................................	24	1	9.00	9	0	0	0	2	7	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTCA...................................................................................................................................................................................................................	23	1	9.00	9	0	0	0	2	7	0
..........................................................................................................ATATTGTCCTGTCACAGCAGGT....................................................................................................................................................................................................................	22	1	8.00	8	0	0	0	1	7	0
...........................................................................................................TATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	21	1	8.00	8	0	3	0	2	3	0
............................................................................................................ATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	20	1	7.00	7	0	4	1	0	2	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAC...................................................................................................................................................................................................................	23	1	7.00	7	0	1	0	2	4	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATTT........................................................................................................................................................................	19	1	7.00	7	0	0	0	1	6	0
........................................................................................................................................................ACTGCTGGGTCGGGGCATTAAC......................................................................................................................................................................	22	1	6.00	6	1	0	1	2	2	0
...........................................................................................................TATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	22	1	6.00	6	0	5	0	0	1	0
..........................................................................................................ATATTGTCCTGTCACAGCTT......................................................................................................................................................................................................................	20	3	6.00	18	0	0	0	5	13	0
.............................................................................................................TTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	18	1	6.00	6	0	1	0	2	3	0
..........................................................................................................ATATTGTCCTGTCACAGCAGCC....................................................................................................................................................................................................................	22	1	6.00	6	0	0	0	0	6	0

droAna3

AAA--------------------GGATA----TATGGTGTCATA--------------------------T-------------------A-GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGG---------------AG-------------GAAA--AGTCA------------------AGGA-----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................ATATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	21	1	55950.00	55950	2462	965	231	15698	2408	34186
..........................................................................................................ATATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	22	1	11821.00	11821	1245	1963	385	1264	66	6898
..........................................................................................................ATATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	20	1	8774.00	8774	1223	36	8	1987	52	5468
..........................................................................................................ATATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	22	1	5797.00	5797	143	2	1	973	58	4620
..........................................................................................................ATATTGTCCTGTCACAGCA.......................................................................................................................................................................................................................	19	1	2164.00	2164	110	3	1	475	4	1571
..........................................................................................................ATATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	23	1	1244.00	1244	81	11	13	230	7	902
..........................................................................................................ATATTGTCCTGTCACAGCAGA.....................................................................................................................................................................................................................	21	1	791.00	791	20	0	1	88	38	644
..........................................................................................................ATATTGTCCTGTCACAGCAGC.....................................................................................................................................................................................................................	21	1	477.00	477	3	218	1	139	10	106
..........................................................................................................ATATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	23	1	278.00	278	110	7	0	27	0	134
..........................................................................................................ATATTGTCCTGTCACAGCAGTGA...................................................................................................................................................................................................................	23	1	234.00	234	12	0	0	6	2	214
...........................................................................................................TATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	20	1	219.00	219	172	2	0	14	2	29
..........................................................................................................ATATTGTCCTGTCACAGCAGTAG...................................................................................................................................................................................................................	23	1	171.00	171	36	0	0	21	5	109
..........................................................................................................ATATTGTCCTGTCACAGCAT......................................................................................................................................................................................................................	20	1	146.00	146	8	0	0	15	3	120
..........................................................................................................ATATTGTCCTGTCACAGCAGTTG...................................................................................................................................................................................................................	23	1	142.00	142	25	0	0	44	2	71
...........................................................................................................TATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	21	1	111.00	111	83	6	1	2	0	19
..........................................................................................................ATATTGTCCTGTCACAGCAGG.....................................................................................................................................................................................................................	21	1	104.00	104	2	3	1	67	9	22
...........................................................................................................TATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	19	1	90.00	90	80	0	0	5	0	5
..........................................................................................................ATATTGTCCTGTCACAGCAGTAAA..................................................................................................................................................................................................................	24	1	89.00	89	8	6	3	13	0	59
..........................................................................................................ATATTGTCCTGTCACAGCAGTGG...................................................................................................................................................................................................................	23	1	84.00	84	7	0	0	8	0	69
..........................................................................................................ATATTGTCCTGTCACAGCAGTG....................................................................................................................................................................................................................	22	1	83.00	83	14	0	1	16	1	51
..........................................................................................................ATATTGTCCTGTCACAGCAGTTA...................................................................................................................................................................................................................	23	1	77.00	77	9	0	0	20	3	45
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAACA.....................................................................................................................................................................	22	1	48.00	48	6	24	5	2	1	10
..........................................................................................................ATATTGTCCTGTCACAGC........................................................................................................................................................................................................................	18	1	45.00	45	6	3	1	18	0	17
..........................................................................................................ATATTGTCCTGTCACAGCAGTC....................................................................................................................................................................................................................	22	1	45.00	45	2	7	0	23	1	12
..........................................................................................................ATATTGTCCTGTCACAGCAGAT....................................................................................................................................................................................................................	22	1	44.00	44	0	0	0	6	1	37
............................................................................................................ATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	19	1	44.00	44	11	1	0	4	1	27
..........................................................................................................ATATTGTCCTGTCACAGCAGTTGA..................................................................................................................................................................................................................	24	1	37.00	37	3	0	0	3	0	31
..........................................................................................................ATATTGTCCTGTCACAGCAA......................................................................................................................................................................................................................	20	1	34.00	34	3	0	0	16	1	14
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAAC......................................................................................................................................................................	21	1	33.00	33	1	22	4	1	0	5
..........................................................................................................ATATTGTCCTGTCACAGCAGTTAG..................................................................................................................................................................................................................	24	1	29.00	29	4	0	0	3	1	21
............................................................................................................ATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	20	1	28.00	28	7	13	0	0	0	8
..........................................................................................................ATATTGTCCTGTCACAGCAGCT....................................................................................................................................................................................................................	22	1	23.00	23	0	0	0	7	0	16
..........................................................................................................ATATTGTCCTGTCACAGCAGTCG...................................................................................................................................................................................................................	23	1	21.00	21	1	0	0	5	1	14
..........................................................................................................ATATTGTCCTGTCACAGCAGTTAA..................................................................................................................................................................................................................	24	1	21.00	21	1	0	0	2	0	18
..........................................................................................................ATATTGTCCTGTCACAGCT.......................................................................................................................................................................................................................	19	2	20.50	41	3	0	1	22	0	15
..........................................................................................................ATATTGTCCTGTCACAGCAGTCA...................................................................................................................................................................................................................	23	1	16.00	16	2	0	0	8	0	6
...........................................................................................................TATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	22	1	15.00	15	12	0	1	0	0	2
............................................................................................................ATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	18	1	14.00	14	7	0	0	0	0	7
..........................................................................................................ATATTGTCCTGTCACAGCAC......................................................................................................................................................................................................................	20	1	14.00	14	0	2	0	6	0	6
..........................................................................................................ATATTGTCCTGTCACAGCAGTAC...................................................................................................................................................................................................................	23	1	13.00	13	4	3	0	4	0	2
..........................................................................................................ATATTGTCCTGTCACAGCAGTTGG..................................................................................................................................................................................................................	24	1	11.00	11	3	0	0	0	0	8
..........................................................................................................ATATTGTCCTGTCACAGCATG.....................................................................................................................................................................................................................	21	1	10.00	10	0	0	0	10	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAGA..................................................................................................................................................................................................................	24	1	9.00	9	2	0	0	1	0	6
...........................................................................................................TATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	22	1	9.00	9	8	0	0	0	0	1
..........................................................................................................ATATTGTCCTGTCACAGCAGTAAGT.................................................................................................................................................................................................................	25	1	8.00	8	1	0	0	2	1	4
..........................................................................................................ATATTGTCCTGTCACAGCAGAG....................................................................................................................................................................................................................	22	1	8.00	8	1	0	0	4	0	3
..........................................................................................................ATATTGTCCTGTCACAGCAGGT....................................................................................................................................................................................................................	22	1	7.00	7	0	0	0	5	0	2
..........................................................................................................ATATTGTCCTGTCACAGCAGTGAA..................................................................................................................................................................................................................	24	1	7.00	7	2	0	0	0	0	5
............................................................................................................ATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	20	1	7.00	7	1	0	0	2	0	4
..........................................................................................................ATATTGTCCTGTCACAGCAGTAAG..................................................................................................................................................................................................................	24	1	7.00	7	2	0	1	1	1	2
..........................................................................................................ATATTGTCCTGTCACAGCAGTGC...................................................................................................................................................................................................................	23	1	6.00	6	0	0	0	1	0	5
..........................................................................................................ATATTGTCCTGTCACAGCAGTTC...................................................................................................................................................................................................................	23	1	6.00	6	0	0	0	4	0	2
.............................................................................................................TTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	18	1	6.00	6	3	1	0	1	0	1
................................................................................................................................TTGTAATTCTATACTATATAGCTTA...........................................................................................................................................................................................	25	1	6.00	6	0	1	2	0	0	3
..........................................................................................................ATATTGTCCTGTCACAGCATA.....................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	3	0	3
..........................................................................................................ATATTGTCCTGTCACAGCC.......................................................................................................................................................................................................................	19	1	6.00	6	0	0	0	6	0	0

droBip1

ACT---------------ATAAAGGATA----TAC--------------------------------------------CGTCA--TAT-A-GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGG---------------AG-------------GAAA--AGTCA------------------AGGA-----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATA-------------------AGGATA----TATC------------------------------------------GCG-CA--AATCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CAGCG------------------GAAA--ACTC---------CGAAACTCAAAGGAAAACGCACCGAACTTTC---TT---------------------------------------CTTTCC---------G	Size	Hit Count	Total Norm	Total
No Reads

droFic1

A---------------------------------------------------------------------------------------TCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGAAA-ACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGACA-GGCG-GCGGCGGCAAG-------------GAAA--AGCCG------------------AGGAAAACGCACCAAGCTTTC---AT----------------------------------TCCGGCTTTGT---------G	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TAT--------------------ATTTATATATATA----TATATATAT-G-------------------TA--TACACTACGA--AATCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTTTATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG-------------------------------GAAA--ACCC----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

A---------------------------------------------------------------------------------------TCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------AGGCGGCCAG-------------GAAA--AGCCG------------------AC------------------------------------------------------------------------------G	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCCC------------------AGAATA----CATC-------------------------------------------CATCG--AATCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAC--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGA-GGCG-GCGGCGGCAA---------------------------------------------------------------------------------------------------------------------------G	Size	Hit Count	Total Norm	Total
No Reads

droTak1

A----------------------GGATA----TATA-CGCCATG--------------------------TA--C-----ACAA--AATCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGA-GGCG-GCGGCGGCAA---------------------------------------------------------------------------------------------------------------------------G	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AAA-------------------AGGATA----TATA----TATA--------------------------TA--T--GCCACAA--AATCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAATACTATATCTTATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------TGGCGGCAAG-------------GAAA--ACCCG------------------AGGAAAACGCACCAAGCTTTC---TT---------------------------------TTCC------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATA-------------------------------TA----CATA--------------------------TA--T--ACCATGA--AATCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CG-----------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................ATATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	21	1	490974.00	490974	0	0	0	0	93	3	0	0	0	15	4	36	5	0	63	5	0	62	10	0	0	2	4	0	0	31	8	33	103	266	5389	6236	28	31	0	0	3	2	1	1	1	2	2	2	10	8	0	6	8	4	5	0	0	0	0	0	43	20	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	143	9	0	8	21	0	0	317	19	16	45	184	8	280	1126	33	109	6	4	69	61	1926	7	0	1	19	1173	127	228	6	103	4	28	41	17	80	3997	1123	46	579	5	957	429	1682	31	854	54	751	915	0	0	0	0	0	0	0	0	0	0	17	8	49	3	0	7	4	3	8	2	37	2	5	0	3	0	0	0	0	0	4	0	5	0	7	8	10624	13496	0	7643	105	39	3656	7332	297	5911	115	14203	1281	31866	805	6	0	4	3	1	15247	30	13	26	17	0	0	0	24	0	15	8	0	0	0	0	0	0	2	4	0	0	0	3	0	0	2	1	5	26	33	83	36	27	37	28	17	17	14	28	10	2	0	14	2	0	0	0	2787	2387	3	1068	7932	311	5	6	14	3417	3815	11	1950	28	10	5	2	6	3890	65	3	4	2	128	518	2	6	24	96	9	29	7	7	1	30	200	6	9	7	32	2	20	6	13	37	4	124	36830	52180	35045	55098	585	18274	12516	5664	43	201	14	52	9	32	13592	29	11604	13296	0	13	41	132	118	2408	21	51	67	4	10	16	39	4	13	4	1187	50774	3175	681	1833	1398	1259	27	5	17	24	11	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	22	1	128301.00	128301	0	0	0	0	30	1	0	2	17	28	7	50	6	0	12	11	0	16	9	0	0	1	0	0	0	0	0	576	280	1441	3285	4247	64	55	0	0	1	0	0	0	1	1	0	1	7	1	1	4	3	2	2	1	0	0	0	0	37	16	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45	31	2	215	289	5	0	456	44	27	71	92	26	399	258	10	51	18	17	94	136	723	4	1	2	20	1180	155	367	5	249	68	52	40	31	70	2149	1092	31	353	4	626	1437	7509	125	498	27	391	473	0	0	0	0	0	0	0	0	0	0	19	10	62	42	1	1	3	1	1	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6791	8376	0	5031	1420	638	2719	4929	1595	3569	310	9226	7364	14315	1157	0	1	0	2	0	11412	8	6	10	4	0	0	0	4	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21	1	8	70	32	49	50	39	24	28	61	46	5	6	28	98	45	0	0	1425	1235	0	226	679	23	1	0	6	853	1007	1	631	7	0	0	1	1	438	8	2	2	0	32	46	0	1	6	14	1	6	1	0	1	3	39	1	7	2	12	1	3	1	0	1	1	2	861	1295	897	2084	282	2525	218	101	0	7	4	7	0	1	267	1	279	379	6	1	6	17	5	289	0	6	1	0	0	1	3	1	0	0	28	1868	76	38	83	38	23	2	2	5	8	3	0
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................................................................................................................................TTGTAACACTATAT--TATAGTTTA...........................................................................................................................................................................................	23	1	186.00	186	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	15	0	1	13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	1	0	1	0	0	4	5	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	18	0	8	0	1	0	17	0	1	16	1	1	8	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	7	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTCA...................................................................................................................................................................................................................	23	1	180.00	180	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43	2	0	0	0	0	1	3	0	18	0	11	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	18	0	11	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	6	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTTA...................................................................................................................................................................................................................	23	1	170.00	170	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	1	0	0	0	5	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	38	0	14	0	0	4	7	0	4	0	15	0	21	1	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	8	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAC......................................................................................................................................................................................................................	20	1	152.00	152	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	1	0	0	0	12	1	10	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21	21	0	7	0	0	0	4	0	0	0	3	0	2	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	4	3	19	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCC.......................................................................................................................................................................................................................	19	1	143.00	143	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	18	12	0	4	0	0	0	0	0	5	0	4	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	6	0	3	1	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27	0	0	0	0	0	16	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	9	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGGT....................................................................................................................................................................................................................	22	1	128.00	128	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	5	0	3	0	0	0	4	0	0	0	28	0	37	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	13	8	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCATG.....................................................................................................................................................................................................................	21	1	124.00	124	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	5	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	9	0	2	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	16	8	21	0	10	7	3	0	0	0	0	0	0	5	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

G------------------------ATA----TATA----CATA--------------------------TA--T--ACCGTGA--AATCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTTACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGACAG-------------GAAA--ACCTG------------------AGAAAAACGCACCAAGCTTTA---TT---------------------------------TTCCGGCTTTGT---------G	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................ATATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	20	1	20599.00	20599	17787	335	303	37	50	2030	0	1	16	19	0	20	0	1	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	22	1	13350.00	13350	2880	59	1518	70	53	3017	4	3	588	630	4	4519	0	3	0	0	2
..........................................................................................................ATATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	21	1	9946.00	9946	4390	106	224	86	30	2345	9	7	747	575	4	1421	1	0	1	0	0
..........................................................................................................ATATTGTCCTGTCACAGCA.......................................................................................................................................................................................................................	19	1	3715.00	3715	495	6	2	4	83	3115	0	0	3	6	1	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGC........................................................................................................................................................................................................................	18	1	2697.00	2697	471	9	6	0	46	2163	0	0	0	1	0	1	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGC.....................................................................................................................................................................................................................	21	1	489.00	489	458	10	19	1	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGG.....................................................................................................................................................................................................................	21	1	447.00	447	388	16	35	2	0	0	0	1	0	0	0	5	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAC......................................................................................................................................................................................................................	20	1	359.00	359	352	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	23	1	308.00	308	13	2	0	0	5	285	0	0	1	0	0	2	0	0	0	0	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAACA.....................................................................................................................................................................	22	1	187.00	187	17	0	74	1	0	8	0	0	3	0	0	82	0	1	1	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	23	1	168.00	168	19	0	0	5	0	0	0	0	46	42	1	54	0	1	0	0	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAAC......................................................................................................................................................................	21	1	101.00	101	13	1	61	0	0	7	0	0	0	1	0	18	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	22	1	91.00	91	69	2	2	2	0	0	0	0	0	1	0	15	0	0	0	0	0
............................................................................................................ATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	20	1	42.00	42	0	0	1	1	0	37	0	0	0	0	0	3	0	0	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	21	1	30.00	30	3	0	2	6	0	10	0	0	4	1	0	4	0	0	0	0	0
............................................................................................................ATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	18	1	29.00	29	7	0	0	0	0	22	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	19	1	28.00	28	17	1	0	4	1	5	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTG....................................................................................................................................................................................................................	22	1	28.00	28	19	0	3	0	0	0	0	0	0	0	0	6	0	0	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	20	1	23.00	23	3	0	1	6	0	5	0	0	3	4	0	1	0	0	0	0	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATT.........................................................................................................................................................................	18	1	22.00	22	12	2	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTC....................................................................................................................................................................................................................	22	1	20.00	20	9	1	0	0	0	0	0	0	1	0	0	9	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGA.....................................................................................................................................................................................................................	21	1	17.00	17	13	1	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCA.......................................................................................................................................................................................................................	18	1	15.00	15	0	0	0	0	1	14	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAAA..................................................................................................................................................................................................................	24	1	14.00	14	2	0	1	0	0	0	0	0	6	4	0	1	0	0	0	0	0
............................................................................................................ATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	19	1	13.00	13	0	0	0	0	0	11	0	0	1	0	0	1	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCG.......................................................................................................................................................................................................................	19	1	13.00	13	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTGTTGAGCGTCATTAGC...................................................................................................................................................	18	1	11.00	11	8	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTGTTGAGCGTCATTAGCAAC................................................................................................................................................	21	1	11.00	11	8	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTATT..................................................................................................................................................................................................................	24	1	10.00	10	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCT.......................................................................................................................................................................................................................	19	2	9.50	19	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAA......................................................................................................................................................................................................................	20	1	9.00	9	8	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	22	1	7.00	7	0	0	0	0	0	6	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAA.......................................................................................................................................................................	20	1	6.00	6	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATTA........................................................................................................................................................................	19	1	6.00	6	1	0	1	0	0	4	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCC.......................................................................................................................................................................................................................	19	1	5.00	5	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	1	0	0	0	1	0	3	0	0	0	0	0
................................................................................................................................TTGTTACACTATAT--TATAGTTTA...........................................................................................................................................................................................	23	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATA.........................................................................................................................................................................	18	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCTT......................................................................................................................................................................................................................	20	2	4.00	8	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAC...................................................................................................................................................................................................................	23	1	4.00	4	2	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................ATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTCA...................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0
...............................................................................................................................................................................TTGTTGAGCGTCATTAGCAACG...............................................................................................................................................	22	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTGGGTCGGGGCATTAACA.....................................................................................................................................................................	19	1	3.00	3	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTGTTGAGCGTCATTAGCA..................................................................................................................................................	19	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACA..........................................................................................................................................................................................................................	16	1	3.00	3	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGG........................................................................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGCT....................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
............................................................................................................................................................CTGGGTCGGGGCATTAAC......................................................................................................................................................................	18	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCATA.....................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.............................................................................................................TTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAAG.....................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTGG...................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGT........................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAACG.....................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................ATTGTCCTGTCACAGCAGTATTG.................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTGTTGAGCGTCATTAGCAACA...............................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTGTTGAGCGTCATTAGCG..................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TACTGCTGGGTCGGGGCATT.........................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCAC......................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................AACGAG--------CGGCGGACAG-------------GAAA--ACCTG------------------A................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

ATA-------------------------------TG----CATA--------------------------TA--T--ACCATGA--AATCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGACAG-------------GAAA--ACCTG------------------AGAA-----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................................................................................................ATATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	21	1	45317.00	45317	811	4696	6045	33765
..........................................................................................................ATATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	22	1	10064.00	10064	420	136	5906	3602
..........................................................................................................ATATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	20	1	5979.00	5979	351	204	75	5349
..........................................................................................................ATATTGTCCTGTCACAGCA.......................................................................................................................................................................................................................	19	1	3172.00	3172	23	0	19	3130
..........................................................................................................ATATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	22	1	1908.00	1908	33	77	19	1779
..........................................................................................................ATATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	23	1	480.00	480	31	15	97	337
..........................................................................................................ATATTGTCCTGTCACAGCAGA.....................................................................................................................................................................................................................	21	1	401.00	401	4	12	1	384
...........................................................................................................TATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	20	1	389.00	389	73	29	34	253
...........................................................................................................TATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	21	1	209.00	209	40	8	50	111
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAACA.....................................................................................................................................................................	22	1	179.00	179	0	6	159	14
..........................................................................................................ATATTGTCCTGTCACAGCAGC.....................................................................................................................................................................................................................	21	1	83.00	83	0	5	8	70
..........................................................................................................ATATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	23	1	64.00	64	24	0	8	32
............................................................................................................ATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	19	1	57.00	57	5	1	24	27
...........................................................................................................TATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	19	1	47.00	47	20	0	0	27
............................................................................................................ATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	20	1	46.00	46	2	1	35	8
..........................................................................................................ATATTGTCCTGTCACAGCAGTC....................................................................................................................................................................................................................	22	1	36.00	36	0	7	5	24
..........................................................................................................ATATTGTCCTGTCACAGC........................................................................................................................................................................................................................	18	1	36.00	36	4	0	1	31
...........................................................................................................TATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	21	1	28.00	28	0	0	0	28
..........................................................................................................ATATTGTCCTGTCACAGCAGG.....................................................................................................................................................................................................................	21	1	28.00	28	12	0	2	14
..........................................................................................................ATATTGTCCTGTCACAGCAGTAAA..................................................................................................................................................................................................................	24	1	27.00	27	0	3	0	24
..........................................................................................................ATATTGTCCTGTCACAGCAA......................................................................................................................................................................................................................	20	1	22.00	22	1	0	0	21
..........................................................................................................ATATTGTCCTGTCACAGCAGTG....................................................................................................................................................................................................................	22	1	16.00	16	0	0	12	4
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAAC......................................................................................................................................................................	21	1	15.00	15	0	0	13	2
..........................................................................................................ATATTGTCCTGTCACAGT........................................................................................................................................................................................................................	18	1	10.00	10	0	0	0	10
..........................................................................................................ATATTGTCCTGTCACAGCAT......................................................................................................................................................................................................................	20	1	9.00	9	2	1	0	6
...........................................................................................................TATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	22	1	8.00	8	2	0	0	6
..........................................................................................................ATATTGTCCTGTCACAGCAGTAC...................................................................................................................................................................................................................	23	1	8.00	8	2	0	1	5
.........................................................................................................................................................CTGCTGGGTCGGGGCATTA........................................................................................................................................................................	19	1	8.00	8	1	0	6	1
...........................................................................................................TATTGTCCTGTCACAGCA.......................................................................................................................................................................................................................	18	1	7.00	7	2	0	1	4
..........................................................................................................ATATTGTCCTGTCACAGCAGTAG...................................................................................................................................................................................................................	23	1	7.00	7	1	0	1	5
..........................................................................................................ATATTGTCCTGTCACAGCATA.....................................................................................................................................................................................................................	21	1	6.00	6	3	0	1	2
...........................................................................................................TATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	22	1	6.00	6	4	0	2	0
................................................................................................................................TTGTAACACTATAT--TATAGTTTA...........................................................................................................................................................................................	23	1	5.00	5	0	0	4	1
..........................................................................................................ATATTGTCCTGTCACAGCT.......................................................................................................................................................................................................................	19	2	4.50	9	0	0	0	9
.........................................................................................................................................................CTGCTGGGTCGGGGCATTT........................................................................................................................................................................	19	1	4.00	4	0	0	0	4
.............................................................................................................TTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	19	1	4.00	4	1	0	1	2
..........................................................................................................ATATTGTCCTGTCACAGCAGTTA...................................................................................................................................................................................................................	23	1	4.00	4	3	0	0	1
............................................................................................................ATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	18	1	4.00	4	2	0	0	2
..........................................................................................................ATATTGTCCTGTCACAGCAGTGG...................................................................................................................................................................................................................	23	1	4.00	4	1	0	0	3
.............................................................................................................TTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	18	1	4.00	4	1	0	0	3
.........................................................................................................................................................CTGCTGGGTCGGGGCATT.........................................................................................................................................................................	18	1	4.00	4	0	0	2	2
..........................................................................................................ATATTGTCCTGTCACAGCG.......................................................................................................................................................................................................................	19	1	4.00	4	0	0	0	4
..........................................................................................................ATATTGTCCTGTCACAGCAGTCG...................................................................................................................................................................................................................	23	1	3.00	3	0	1	0	2
..........................................................................................................ATATTGTCCTGTCACAGCAGAT....................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	3
.............................................................................................................TTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	20	1	3.00	3	1	0	0	2
..........................................................................................................ATATTGTCCTGTCACAGCAGTAGA..................................................................................................................................................................................................................	24	1	3.00	3	1	0	1	1
..........................................................................................................ATATTGTCCTGTCACAGCAGTCA...................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	3
..........................................................................................................ATATTGTCCTGTCACAGCAC......................................................................................................................................................................................................................	20	1	3.00	3	1	0	0	2
..........................................................................................................ATATTGTCCTGTCACAGCATC.....................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAACAA....................................................................................................................................................................	23	1	2.00	2	0	0	1	1
............................................................................................................ATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2
..........................................................................................................ATATTGTCCTGTCACAGCAGCT....................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	2
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAACT.....................................................................................................................................................................	22	1	2.00	2	0	0	1	1
..........................................................................................................ATATTGTCCTGTCACAGCAGTTAA..................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	2
..........................................................................................................ATATTGTCCTGTCACAGCGTA.....................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTTG...................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	2
...........................................................................................................TATTGTCCTGTCACAGCAGA.....................................................................................................................................................................................................................	20	1	2.00	2	1	0	0	1
..............................................................................................................TGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	18	1	2.00	2	0	0	1	1
..........................................................................................................ATATTGTCCTGTCACAGCTA......................................................................................................................................................................................................................	20	2	2.00	4	0	0	2	2

droYak3

--------------------------------------------------------------------------------------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------AGGCGGCCAG-------------GAAAAAAGGCG------------------AGAAAAACGCACCAAGCTTTC---TT---------------------------------TTCCGGCTTTGT---------G	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................ATATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	21	1	48530.00	48530	1441	1180	1208	912	17480	25139	1159	4	2	5	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	22	1	20973.00	20973	977	624	12913	3804	1115	1470	34	9	2	25	0
..........................................................................................................ATATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	20	1	7246.00	7246	2818	474	57	10	1789	2068	24	1	0	5	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	22	1	1269.00	1269	17	31	8	18	469	719	7	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	23	1	693.00	693	5	54	14	21	264	332	3	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGC.....................................................................................................................................................................................................................	21	1	683.00	683	170	0	292	0	36	184	1	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCA.......................................................................................................................................................................................................................	19	1	677.00	677	60	22	0	2	217	373	3	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGG.....................................................................................................................................................................................................................	21	1	351.00	351	167	0	6	4	66	107	1	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTC....................................................................................................................................................................................................................	22	1	169.00	169	6	3	66	12	30	52	0	0	0	0	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAACA.....................................................................................................................................................................	22	1	164.00	164	22	7	84	35	2	6	0	2	0	6	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	23	1	145.00	145	22	46	21	4	23	28	1	0	0	0	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAAC......................................................................................................................................................................	21	1	129.00	129	6	0	108	13	1	1	0	0	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	20	1	107.00	107	0	77	4	0	12	14	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGA.....................................................................................................................................................................................................................	21	1	107.00	107	4	4	1	1	20	77	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAC......................................................................................................................................................................................................................	20	1	85.00	85	76	0	2	0	1	6	0	0	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	21	1	79.00	79	1	43	23	5	2	5	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGC........................................................................................................................................................................................................................	18	1	75.00	75	60	3	5	0	3	4	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTCA...................................................................................................................................................................................................................	23	1	48.00	48	0	1	0	0	24	20	3	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAT......................................................................................................................................................................................................................	20	1	45.00	45	2	0	0	0	10	33	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTG....................................................................................................................................................................................................................	22	1	43.00	43	7	2	4	11	8	11	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAAA..................................................................................................................................................................................................................	24	1	38.00	38	3	4	0	0	11	19	1	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAC...................................................................................................................................................................................................................	23	1	34.00	34	3	5	12	1	3	10	0	0	0	0	0
...........................................................................................................TATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	19	1	33.00	33	2	30	0	0	1	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAG...................................................................................................................................................................................................................	23	1	26.00	26	2	7	0	1	4	12	0	0	0	0	0
............................................................................................................ATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	19	1	26.00	26	1	12	1	0	6	5	1	0	0	0	0
...............................................................................................................................................................................TTGTTGAGCGTCATTAGCAAC................................................................................................................................................	21	1	25.00	25	20	0	3	0	0	2	0	0	0	0	0
............................................................................................................ATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	20	1	25.00	25	0	4	19	1	1	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAA......................................................................................................................................................................................................................	20	1	21.00	21	0	1	2	0	6	12	0	0	0	0	0
................................................................................................................................TTGTAACACTATAT--TATAGCTTA...........................................................................................................................................................................................	23	1	18.00	18	0	0	4	12	0	2	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGCT....................................................................................................................................................................................................................	22	1	16.00	16	0	0	0	1	5	10	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCC.......................................................................................................................................................................................................................	19	1	15.00	15	1	0	0	0	2	12	0	0	0	0	0
...............................................................................................................................................................................TTGTTGAGCGTCATTAGC...................................................................................................................................................	18	1	13.00	13	10	0	1	0	1	1	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGGT....................................................................................................................................................................................................................	22	1	11.00	11	0	0	0	0	4	7	0	0	0	0	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAA.......................................................................................................................................................................	20	1	10.00	10	0	0	8	1	0	0	0	0	0	1	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATT.........................................................................................................................................................................	18	1	10.00	10	5	0	2	0	1	2	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTGA...................................................................................................................................................................................................................	23	1	10.00	10	3	2	0	1	1	3	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCATC.....................................................................................................................................................................................................................	21	1	9.00	9	0	0	0	0	0	9	0	0	0	0	0
............................................................................................................ATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	18	1	8.00	8	0	5	0	0	1	0	1	0	0	1	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTTA...................................................................................................................................................................................................................	23	1	8.00	8	0	0	0	0	7	1	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTTC...................................................................................................................................................................................................................	23	1	8.00	8	1	0	0	0	4	3	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTTG...................................................................................................................................................................................................................	23	1	8.00	8	1	1	0	0	3	3	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTCC...................................................................................................................................................................................................................	23	1	7.00	7	0	0	0	0	1	6	0	0	0	0	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATTA........................................................................................................................................................................	19	1	7.00	7	0	0	6	0	1	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCATG.....................................................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	3	4	0	0	0	0	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAACT.....................................................................................................................................................................	22	1	7.00	7	0	0	7	0	0	0	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTTAA..................................................................................................................................................................................................................	24	1	6.00	6	0	0	0	0	2	4	0	0	0	0	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTCG...................................................................................................................................................................................................................	23	1	6.00	6	0	1	0	0	4	1	0	0	0	0	0

droEre2

G------------------------ATA----TATA---CCATG--------------------------TA--T--ACCATGA--AATCG-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGTCAG-------------GAAAA-AAGCG------------------AGAAAAACGCACCAAGCTTTC---TT---------------------------------TTCCGGCTTTGT---------G	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................................ATATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	21	1	70255.00	70255	1827	2267	6048	1131	11250	47732	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	22	1	17908.00	17908	1369	6249	559	2723	376	6632	0
..........................................................................................................ATATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	20	1	7295.00	7295	536	44	599	13	399	5704	0
..........................................................................................................ATATTGTCCTGTCACAGCA.......................................................................................................................................................................................................................	19	1	5197.00	5197	28	4	219	3	30	4913	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	23	1	1938.00	1938	95	14	86	27	91	1625	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	22	1	1772.00	1772	44	5	128	15	120	1460	0
..........................................................................................................ATATTGTCCTGTCACAGCAGC.....................................................................................................................................................................................................................	21	1	551.00	551	1	415	22	6	9	98	0
...........................................................................................................TATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	20	1	263.00	263	124	7	12	1	11	108	0
...........................................................................................................TATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	21	1	220.00	220	94	18	4	9	1	94	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	23	1	216.00	216	75	13	12	3	3	110	0
..........................................................................................................ATATTGTCCTGTCACAGCAGA.....................................................................................................................................................................................................................	21	1	180.00	180	1	0	16	2	8	153	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAACA.....................................................................................................................................................................	22	1	124.00	124	14	22	23	16	3	46	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAAA..................................................................................................................................................................................................................	24	1	107.00	107	4	0	4	1	4	94	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTC....................................................................................................................................................................................................................	22	1	106.00	106	3	31	15	9	13	35	0
............................................................................................................ATTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	19	1	90.00	90	10	3	6	1	14	56	0
..........................................................................................................ATATTGTCCTGTCACAGCAGG.....................................................................................................................................................................................................................	21	1	82.00	82	24	9	13	3	3	30	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTG....................................................................................................................................................................................................................	22	1	67.00	67	8	2	4	10	0	43	0
..........................................................................................................ATATTGTCCTGTCACAGC........................................................................................................................................................................................................................	18	1	64.00	64	2	1	1	0	0	60	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAG...................................................................................................................................................................................................................	23	1	50.00	50	6	0	1	0	1	42	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAC...................................................................................................................................................................................................................	23	1	46.00	46	6	2	5	3	0	30	0
...........................................................................................................TATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	19	1	44.00	44	39	0	0	0	0	5	0
............................................................................................................ATTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	20	1	44.00	44	5	14	0	0	0	25	0
..........................................................................................................ATATTGTCCTGTCACAGCAT......................................................................................................................................................................................................................	20	1	43.00	43	0	0	7	0	0	36	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTGA...................................................................................................................................................................................................................	23	1	37.00	37	3	0	0	0	2	32	0
.........................................................................................................................................................CTGCTGGGTCGGGGCATTAAC......................................................................................................................................................................	21	1	33.00	33	1	16	1	5	1	9	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTTG...................................................................................................................................................................................................................	23	1	30.00	30	2	0	3	0	1	24	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTCA...................................................................................................................................................................................................................	23	1	19.00	19	0	0	2	0	1	16	0
..........................................................................................................ATATTGTCCTGTCACAGCAA......................................................................................................................................................................................................................	20	1	19.00	19	0	0	2	0	0	17	0
................................................................................................................................TTGTAACACTATAT--TATAGCTTA...........................................................................................................................................................................................	23	1	18.00	18	0	0	0	7	0	11	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTCG...................................................................................................................................................................................................................	23	1	15.00	15	0	0	1	0	3	11	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTTA...................................................................................................................................................................................................................	23	1	15.00	15	3	0	2	0	3	7	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTTAA..................................................................................................................................................................................................................	24	1	13.00	13	0	0	0	0	1	12	0
...........................................................................................................TATTGTCCTGTCACAGCAGTT....................................................................................................................................................................................................................	21	1	12.00	12	1	0	1	0	0	10	0
...............................................................................................................................................................................TTGTTGAGCGTCATTAGCAACA...............................................................................................................................................	22	1	11.00	11	0	0	2	0	2	7	0
............................................................................................................ATTGTCCTGTCACAGCAG......................................................................................................................................................................................................................	18	1	11.00	11	6	0	0	0	1	4	0
...........................................................................................................TATTGTCCTGTCACAGCAGTAT...................................................................................................................................................................................................................	22	1	10.00	10	9	0	0	0	0	1	0
...........................................................................................................TATTGTCCTGTCACAGCA.......................................................................................................................................................................................................................	18	1	9.00	9	4	0	0	0	0	5	0
..........................................................................................................ATATTGTCCTGTCACAGCG.......................................................................................................................................................................................................................	19	1	9.00	9	0	0	0	0	0	9	0
..........................................................................................................ATATTGTCCTGTCACAGCAC......................................................................................................................................................................................................................	20	1	9.00	9	0	1	1	0	0	7	0
..........................................................................................................ATATTGTCCTGTCACAGT........................................................................................................................................................................................................................	18	1	8.00	8	0	0	0	0	0	8	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTGC...................................................................................................................................................................................................................	23	1	7.00	7	1	0	1	0	0	5	0
...............................................................................................................................................................................TTGTTGAGCGTCATTAGCAACG...............................................................................................................................................	22	1	7.00	7	0	0	0	0	0	7	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTTC...................................................................................................................................................................................................................	23	1	6.00	6	0	0	2	0	0	4	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTGG...................................................................................................................................................................................................................	23	1	6.00	6	0	0	0	0	0	6	0
.............................................................................................................TTGTCCTGTCACAGCAGT.....................................................................................................................................................................................................................	18	1	6.00	6	2	0	2	0	0	2	0
...........................................................................................................TATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	22	1	6.00	6	3	0	0	0	1	2	0
.............................................................................................................TTGTCCTGTCACAGCAGTA....................................................................................................................................................................................................................	19	1	5.00	5	0	2	0	1	0	2	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTTGA..................................................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	5	0
.......................................................................................................................................................TACTGCTGGGTCGGGGCATTAAC......................................................................................................................................................................	23	1	5.00	5	0	0	0	1	0	4	0
............................................................................................................ATTGTCCTGTCACAGCAGTAA...................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	4	0
..........................................................................................................ATATTGTCCTGTCACAGCATA.....................................................................................................................................................................................................................	21	1	4.00	4	1	0	0	0	0	3	0
..........................................................................................................ATATTGTCCTGTCACAGCAGCT....................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	4	0
...............................................................................................................................................................................TTGTTGAGCGTCATTAGCT..................................................................................................................................................	19	1	4.00	4	0	0	1	0	0	3	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTTGC..................................................................................................................................................................................................................	24	1	4.00	4	0	0	1	0	0	3	0
..........................................................................................................ATATTGTCCTGTCACAGCAGTAAAA.................................................................................................................................................................................................................	25	1	4.00	4	1	0	0	0	0	3	0

dmo_3

scaffold_6540:25791565-25791630 +

Known Ortholog

Canonical miRNA

antisense_to_intron

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-37.8	-37.5	-37.4