ID:

dmo_298

 Coordinate:

scaffold_6500:30271751-30271822 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.4 -27.4 -27.3

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. scaffold_4078:536-561 +
  2. dmo_298  scaffold_6500:30271751-30271776 +
star

Sense Strand Reads

CCGTTTAGCGCATTTTGTCCCCTTCGGACTGCTGTTTGGAGCTGGCCACATCGATGTCGTTCGCAACTGCCACTGGTGACGAACTTTGACGCCGGTTGGCATTTTGCGGCTCACTTCTCAGTCGCGCACAGCTCCCAACAGCAATCCGAAATTTGTCTGCAGTCAGCTTAAA
***********************************...((((((((((.((((.(((((((((..(((......)))..)))))...)))).))))))))......)))))).............*********************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V049
head
 V041
embryo
 V056
head
..................................................TCGATGTCGTTCGCAACTGCCACTGG................................................................................................ 26 0 2 7.50 15 9 1 5 0 0 0
..................................................TCGATGTCGTTCGCAACTGCCACT.................................................................................................. 24 0 2 5.50 11 5 5 1 0 0 0
................................................................................GAACTTTGGGCCCGGTTGGC........................................................................ 20 3 7 4.43 31 21 1 8 1 0 0
..................................................TCGATGTCGTTCGCAACTGCCACTG................................................................................................. 25 0 2 4.00 8 7 0 1 0 0 0
..............................................................................................................TCACTTCTCAGTCGCGCACAGCTCC..................................... 25 0 1 4.00 4 2 2 0 0 0 0
..................................................TCGATGTCGTTCGCAACTGCCAC................................................................................................... 23 0 20 3.05 61 61 0 0 0 0 0
..................................................TCGATGTCGTTCGCAACTGCC..................................................................................................... 21 0 20 2.95 59 13 46 0 0 0 0
..................................................TCGATGTCGTTCGCAACTGCCACTGGTG.............................................................................................. 28 0 2 1.50 3 3 0 0 0 0 0
..............................................................................................................TCACTTCTCAGTCGCGCACAGCTC...................................... 24 0 1 1.00 1 1 0 0 0 0 0
....................................................................................TTTGACGCCGGTTGGCATTTTGCGGC.............................................................. 26 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................TTGACGCCGGTTGGCATTTTGCGG............................................................... 24 0 1 1.00 1 1 0 0 0 0 0
...............................................................CAACTGCCGTTGGTGACGAA......................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0
.............TTTGTCCCCTTCAAACCGCTGTT........................................................................................................................................ 23 3 1 1.00 1 0 0 0 1 0 0
..............................................................................................................TCACTTCTCAGTCGCGCACATCTCCC.................................... 26 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................TCCGAAATTTGTCTGCAGTCAGCT.... 24 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................TCATTTCTCAGTCGCGCACAGCTCC..................................... 25 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................................TCACTTCTCAGTCGCGCACAGCT....................................... 23 0 1 1.00 1 0 1 0 0 0 0
.............................................................................GACGAACTTTGACGCCGGTTGGC........................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................TCACTTCTCAGTCGCGCACTGCTC...................................... 24 1 1 1.00 1 0 1 0 0 0 0
............................................................................TGACGAACTTTGACGCCGGTTGGC........................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................TCAGTCGCGCACAGCTCCCAACAGC.............................. 25 0 1 1.00 1 1 0 0 0 0 0
..................................................TCGATGTCGTTCGCAACTGCCACTTAT............................................................................................... 27 2 2 0.50 1 1 0 0 0 0 0
..................................................TCGATGTCGTTCGCAACTGCCATTG................................................................................................. 25 1 2 0.50 1 1 0 0 0 0 0
..................................................TCGATGTCGTTCCCAACTGCCACTGG................................................................................................ 26 1 2 0.50 1 0 0 0 0 1 0
...............................................................CAACTGCCGTTGGTGACGA.......................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0
.............TTGGTCCCCTTCGAACAGCTGTT........................................................................................................................................ 23 3 2 0.50 1 0 0 0 1 0 0
..................................................TCGATGTCGTTCGCAACTGC...................................................................................................... 20 0 20 0.45 9 8 0 0 1 0 0
...................................................CGATGTCGTTCGCAACTGCCAC................................................................................................... 22 0 20 0.35 7 7 0 0 0 0 0
..................................................TCGATGTCGCTCGCAACTGCCACTGGT............................................................................................... 27 1 3 0.33 1 0 1 0 0 0 0
..................................................TCGATGTCGTTCGCAACTGTCACTT................................................................................................. 25 2 3 0.33 1 0 1 0 0 0 0
..................................................TCGATGTCGTTCGCAACT........................................................................................................ 18 0 20 0.30 6 6 0 0 0 0 0
................................................................................GAACTTTGGGCCCGGTTGG......................................................................... 19 3 17 0.29 5 3 0 2 0 0 0
..................................................TCGATGTCGTTCGCAACTGCCACCGGTGA............................................................................................. 29 1 20 0.20 4 4 0 0 0 0 0
..............TTGTCCCCTTCACACAGCTGT......................................................................................................................................... 21 3 5 0.20 1 0 0 0 1 0 0
..........................................TGGCCACATCGATGTCGTTCGCAAC......................................................................................................... 25 0 20 0.15 3 3 0 0 0 0 0
..................................................TCGTTGTCGTTCGCAACTGCCAC................................................................................................... 23 1 20 0.15 3 0 3 0 0 0 0
.............TTGGTCCCCTTCGCCCTGCTGT......................................................................................................................................... 22 3 7 0.14 1 0 0 0 0 0 1
..................................................TCGATGTCGTTCGCAACTGCCAT................................................................................................... 23 1 20 0.10 2 2 0 0 0 0 0
............................................GCCACATCGATGTCGTTCGCAACT........................................................................................................ 24 0 20 0.10 2 0 2 0 0 0 0
..........................................TGGCCACATCGATGTCGTTCGCAA.......................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
....................................................GATGTCGTTCGCAACTGCCA.................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0
..................................................TCGTTGTCGTTCGCAACTGCCA.................................................................................................... 22 1 20 0.05 1 0 1 0 0 0 0
............................................GCCACATCGATGTCGTTCGCAACTGCC..................................................................................................... 27 0 20 0.05 1 0 1 0 0 0 0
..........................................TGGCCACATCGATGTCGTTCGCAACTG....................................................................................................... 27 0 20 0.05 1 0 1 0 0 0 0
..................................................TCGATGTCGTTCGCAACTGCCA.................................................................................................... 22 0 20 0.05 1 0 0 1 0 0 0
..........................................TGGCCACATCGATGTCGTTCGCAACT........................................................................................................ 26 0 20 0.05 1 0 0 0 0 1 0
..................................................TGGATGTCGTTCGCAACTGCC..................................................................................................... 21 1 20 0.05 1 0 1 0 0 0 0
.............................................CCACATCGATGTCGTTCGCAAC......................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0
................................................CATCGATGTCGTTCGCAACTGCCAC................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
..................................................TCGATGTCGTTCGCAACTCCACC................................................................................................... 23 3 20 0.05 1 1 0 0 0 0 0
..................................................TCCATGTCGTTCGCAACTGCC..................................................................................................... 21 1 20 0.05 1 0 1 0 0 0 0
..........................................TGGCCACATCGATGTCGTTCGCAACTGCC..................................................................................................... 29 0 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GGCAAATCGCGTAAAACAGGGGAAGCCTGACGACAAACCTCGACCGGTGTAGCTACAGCAAGCGTTGACGGTGACCACTGCTTGAAACTGCGGCCAACCGTAAAACGCCGAGTGAAGAGTCAGCGCGTGTCGAGGGTTGTCGTTAGGCTTTAAACAGACGTCAGTCGAATTT
***********************************************...((((((((((.((((.(((((((((..(((......)))..)))))...)))).))))))))......)))))).............*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
.......................................TCGACCGGTGTAGCTACAGCA................................................................................................................ 21 0 20 1.50 30 30 0 0
..............................................................................................CAACCGTAAAACGCCGAGTGAAGAGT.................................................... 26 0 1 1.00 1 1 0 0
.................................CAAACCTCGACCGGTGTAGCTACAGCA................................................................................................................ 27 0 1 1.00 1 1 0 0
..CAAATCGCGTAAAACAGGAGAAGCCT................................................................................................................................................ 26 1 1 1.00 1 0 1 0
................................................................................................................................................CGGCTTTAAACAGACGTCAGTCGAATTT 28 1 1 1.00 1 1 0 0
.................................CAAACCTCGACCGGTTTAGCTACAGCA................................................................................................................ 27 1 2 0.50 1 0 1 0
.................................................................................................................................TCGAGGGTTGTCGTTAGGCTTT..................... 22 0 4 0.25 1 1 0 0
.....................................CCTCGACCGGTGTAGCTACAGGA................................................................................................................ 23 1 20 0.25 5 0 5 0
..................................CGACCTCGACCGGTGTAGCTACAGCA................................................................................................................ 26 2 4 0.25 1 1 0 0
..................................................................................................................................CGACCGGTGTCGTTAGGCTTT..................... 21 3 7 0.14 1 1 0 0
.......................................TCGACCGGTGTAGCTACACCA................................................................................................................ 21 1 20 0.10 2 0 2 0
.....................................CCTCGACCGGTGTAGCTACGGCA................................................................................................................ 23 1 20 0.10 2 0 2 0
.....................................CCTCGACCGTTGTAGCTACAGCA................................................................................................................ 23 1 20 0.05 1 0 1 0
.......................................TCGACCGTTGTAGCTACAGCA................................................................................................................ 21 1 20 0.05 1 0 1 0
.....................................CCTCGTCCGGTGTAGCTACAGCA................................................................................................................ 23 1 20 0.05 1 0 1 0
..............................................GTGTAGCTACAGCAAGCGTTGACG...................................................................................................... 24 0 20 0.05 1 1 0 0
........................................CGACCGGTGTAGCTACGGCACT.............................................................................................................. 22 3 20 0.05 1 0 1 0
......................................CTCGACCGGTGTAGCTACAGCA................................................................................................................ 22 0 20 0.05 1 0 0 1
.....................................CCTCGACCGGTGTAGCTACAGCG................................................................................................................ 23 1 20 0.05 1 0 1 0
......................................CTCGACCGGTGTAGCTACAGTA................................................................................................................ 22 1 20 0.05 1 0 1 0
.......................................TCGACCGGTGTAGCTGCAGCA................................................................................................................ 21 1 20 0.05 1 1 0 0
.........................................GACCGGTGTAGCTACAGCA................................................................................................................ 19 0 20 0.05 1 0 1 0
.....................................ACTCGACATGTGTAGCTACAGCA................................................................................................................ 23 3 20 0.05 1 0 0 1
........................................CGACCGGTGTAGCTACAGCAAGCGTGG......................................................................................................... 27 1 20 0.05 1 0 1 0
........................................CGACCGGTGTAGATACAGCA................................................................................................................ 20 1 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:30271701-30271872 + dmo_298 CCGTTTAGCGCATTTTGTCC-CCTTCGGACTGCTGTTTGGAGCTGGCCACATCGATGTCGTTCGCAACTGCCACTGGTGACGAACTTTGACGCCGGTTGGCATTTTGCGGCTCACTTCTCAGTCGCGCACAGCTCCCAACAGCAATCCGAAATTTGTCTGCAGTCAGCTTAAA
droTak1 scf7180000414536:205388-205432 + TCGATTAGAGCACTTTGTTAGTTTTCTTACAGCAGCCTGGTGCTG--------------------------------------------------------------------------------------------------------------------------------
droYak3 3R:16440777-16440784 + CCAGTCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CCGTTTAGCGCATTTTGTCC-CCTTCGGACTGCTGTTTGGAGCTGGCCACATCGATGTCGTTCGCAACTGCCACTGGTGACGAACTTTGACGCCGGTTGGCATTTTGCGGCTCACTTCTCAGTCGCGCACAGCTCCCAACAGCAATCCGAAATTTGTCTGCAGTCAGCTTAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................TCGATGTCGTTCGCAACTGCCACTGG................................................................................................2627.5015900015
...................................................TCGATGTCGTTCGCAACTGCCACT..................................................................................................2425.5011500051
...................................................TCGATGTCGTTCGCAACTGCCACTG.................................................................................................2524.008700001
...............................................................................................................TCACTTCTCAGTCGCGCACAGCTCC.....................................2514.004200020
...................................................TCGATGTCGTTCGCAACTGCCAC...................................................................................................23203.05616100000
...................................................TCGATGTCGTTCGCAACTGCC.....................................................................................................21202.955913000460
...................................................TCGATGTCGTTCGCAACTGCCACTGGTG..............................................................................................2821.503300000
...............................................................................................................TCACTTCTCAGTCGCGCACAGCTC......................................2411.001100000
.....................................................................................TTTGACGCCGGTTGGCATTTTGCGGC..............................................................2611.001100000
......................................................................................TTGACGCCGGTTGGCATTTTGCGG...............................................................2411.001100000
.................................................................................................................................................TCCGAAATTTGTCTGCAGTCAGCT....2411.001100000
...............................................................................................................TCACTTCTCAGTCGCGCACAGCT.......................................2311.001000010
..............................................................................GACGAACTTTGACGCCGGTTGGC........................................................................2311.001100000
.............................................................................TGACGAACTTTGACGCCGGTTGGC........................................................................2411.001100000
......................................................................................................................TCAGTCGCGCACAGCTCCCAACAGC..............................2511.001100000
...................................................TCGATGTCGTTCGCAACTGC......................................................................................................20200.459801000
....................................................CGATGTCGTTCGCAACTGCCAC...................................................................................................22200.357700000
...................................................TCGATGTCGTTCGCAACT........................................................................................................18200.306600000
...........................................TGGCCACATCGATGTCGTTCGCAAC.........................................................................................................25200.153300000
...................................................TCGATGTCGTTCGCAACTGCCAT...................................................................................................23200.102200000
.............................................GCCACATCGATGTCGTTCGCAACT........................................................................................................24200.102000020
...........................................TGGCCACATCGATGTCGTTCGCAA..........................................................................................................24200.051100000
.....................................................GATGTCGTTCGCAACTGCCA....................................................................................................20200.051100000
.............................................GCCACATCGATGTCGTTCGCAACTGCC.....................................................................................................27200.051000010
...........................................TGGCCACATCGATGTCGTTCGCAACTG.......................................................................................................27200.051000010
...................................................TCGATGTCGTTCGCAACTGCCA....................................................................................................22200.051000001
...........................................TGGCCACATCGATGTCGTTCGCAACT........................................................................................................26200.051010000
..............................................CCACATCGATGTCGTTCGCAAC.........................................................................................................22200.051000010
.................................................CATCGATGTCGTTCGCAACTGCCAC...................................................................................................25200.051100000
...........................................TGGCCACATCGATGTCGTTCGCAACTGCC.....................................................................................................29200.051100000
droTak1
TCGATTAGAGCACTTTGTTAGTTTTCTTACAGCAGCCTGGTGCTG--------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droYak3
CCAGTCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads

Generated: 05/15/2015 at 03:07 PM