dmo_290

Name	Class	Family	Strand
Homo6	DNA	hAT-Pegasus	-

CCATTAAAAATTGGGTGACTCTAGCTTTAAAGATTTAGAAGATATAAATTTATTACTGGCTTTCGATAATGTTTTTAATCGATAACAAAATAACGGGACAAGTCATCGATATTTGAAGCAAAACTCGATATGCGCGTGGTATGTATACACGGACGTAGGAAAAGTCTCTAGCCTTATATCTTCTGAGAT *********************************.......((((....((((((..((..((((...((((((..((((((.((...............)).))))))....))))))....))))...))..))))))..)))).......*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V041 embryo	M060 embryo	V110 male body	V049 head
..................................................TATTACTGGCTTTCGATAATGTTTT..................................................................................................................	25	0	4	3.00	12	11	0	1	0	0
..................................................TATTACTGGCTTTCGATAATGTTT...................................................................................................................	24	0	4	1.00	4	3	0	1	0	0
........................................................................................................................................TGGTATGTAAAGACGTACGTAG...............................	22	3	1	1.00	1	0	1	0	0	0
..................................................TATTACTGGCTTTCGATAATGTT....................................................................................................................	23	0	4	0.75	3	2	0	0	1	0
..................................................TATTACTGGCTTTCGATAATGTTTTT.................................................................................................................	26	0	4	0.75	3	3	0	0	0	0
..................................................TATTACTGGCTTTCGATAATGTTTTTAA...............................................................................................................	28	0	4	0.50	2	2	0	0	0	0
................................................................................................................TTGAAGCAAAACTCGATATGCGCGTGG..................................................	27	0	4	0.25	1	1	0	0	0	0
...................................................ATTACTGGCTTTCGATAATGTT....................................................................................................................	22	0	4	0.25	1	1	0	0	0	0
..................................................TATTACTGGCTTTCGATAATGTTTTTA................................................................................................................	27	0	4	0.25	1	1	0	0	0	0
........................................................................................................................................TGGTATGTATACATGTAGGTAG...............................	22	3	4	0.25	1	0	1	0	0	0
..............................................................................TCGATAACAAAATAACGGGACAAATC.....................................................................................	26	1	9	0.11	1	0	0	1	0	0
..............................................................................TCGATAACAAAATAACGGGACAAG.......................................................................................	24	0	18	0.11	2	1	0	1	0	0
........................................................................................................................................TGGTATGTATACAAGTATGTAG...............................	22	3	10	0.10	1	0	0	0	0	1
...........................................................................TAATCGATAACAAAATAACGGGACAAG.......................................................................................	27	0	17	0.06	1	1	0	0	0	0
..............................................................................TCGATAACAAAATAACGGGACA.........................................................................................	22	0	20	0.05	1	1	0	0	0	0
.............................................................................ATCGATAACAAAATAACGGGA...........................................................................................	21	0	20	0.05	1	1	0	0	0	0
..............................................................................TCGATAACAAAAAAACGGGA...........................................................................................	20	1	20	0.05	1	1	0	0	0	0
.....................................................................................................................GCAAAACTCGATATGCGCGTG...................................................	21	0	20	0.05	1	0	0	0	1	0

GGTAATTTTTAACCCACTGAGATCGAAATTTCTAAATCTTCTATATTTAAATAATGACCGAAAGCTATTACAAAAATTAGCTATTGTTTTATTGCCCTGTTCAGTAGCTATAAACTTCGTTTTGAGCTATACGCGCACCATACATATGTGCCTGCATCCTTTTCAGAGATCGGAATATAGAAGACTCTA *********************************.......((((....((((((..((..((((...((((((..((((((.((...............)).))))))....))))))....))))...))..))))))..)))).......*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo
.............CCGCTGAGATCGAAATTTCTAAAT........................................................................................................................................................	24	1	20	0.05	1	0	1
...........................................................................................TTGCCCAGCTCAGTAGCTAG..............................................................................	20	3	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6482:1662800-1662988 +	dmo_290	CCATTAAAAA----------------TTGGGTGACTCTAGCTT---------------------------------TAA-------------------------------------------------------------------------------------------------AGATTTA--------------------------------------GAAGAT--ATAAATTTATTACTGGCTTTCGA--T----------AATGTT-----------------------------TT---TAAT------------------------------CGATAACAAA---ATAACG-GGA--C-A---AGTCA--TCG-------------------------------------------------------------------------------ATA-TTTGAAGCA--------------------AAAC-TCGATATG--CGCGTGG--TA------------------TGTATACACGGACGTAGGAAAA-------GTCTCTA-GCC-T-TATATCTTCTGA--GAT-----------------
droVir3	scaffold_12723:334245-334439 -		CTATTTGTCA--------------AGTTTGATGACTCTAGCTCTTATTATTTACC---------------------AAA-------------------------------------------------------------------------------------------------ATTGCCC--------------------------------------AAAAAC--AGGATAT-------------CGA--TA----T------CGGT-----------------------------TTTATC----------------------------------GATTGCATG---AAAACG-GAG--T-A---AGTTA--TCG-------------------------------------------------------------------------------AGTATCG---------------------GAAACAAAC-TCGTTCTG--CGCA-------GGCACCTGG-------AGCACCTAC--------ATCTAAAATTTTAAGTCTCTA-GCTCT-TATAGGTTCTGA--GAT-----------------
droGri2	scaffold_14853:8963094-8963271 +		TCTATATAAA----------------TTAGAAGAGTCTGCCTT---------------------------------TAAAATTGT-A-GCATTTATTGCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGAAATGTA-----------------------------AA---T----GT-------------------------ATCAATAATCGA---GAAACG-GAT--T-C---AGTTA--TCG-------------------------------------------------------------------------------ATCAAAT---------------------AAAGCAAAA-TTGATCTG--CGCCAGC--------------------AAAACCTAT--------ATTCCAAATTTGAAGTCTCTA-GCCCT-TATTGTCTTTGA--GAT-----------------
droWil2	scf2_1100000004949:1241242-1241424 +		CATACCAA-A----------------TATGGTGTCTCTAGCTA---------------------------------GTATAGTTTTT-GAAATAAACGCTT--------------------------TTTTTAATATAATAAGAAATTATAA-----------------------------------------------------------------------------------------------------------------------------------TAAGAGATTAATATAAT----------CA-----------------------------------------------------------------------------------------------------------------------------------------------GATAATAATTT---------------------GAAATAAAC-TTGATCAC--TA---------CATACTACA-------CGAGTCTAC--------ATAGCAAATTTTGTGGCTCTA-GGTCT-TATAGTCTCCGA--GAT-----------------
dp5	XR_group6:4937856-4938072 -		TTATTGAATA----------------ATTATTATTTTTGGATC---------------------------------AAA-------------------------------------------------------------------------------------------------ACATTTATAACATATTTATTATTTTGTTTGTAT-TGCTTTTGGTT-----AAATTAAA--ACTA-----------------------------A----------------------------------------------------------------------AATAATTAA---AAAAAA-G----------AGTGGGATCG-------------------------------------------------------------------------------AAATTTT---------------------GAAAGATAC-GTTTAATA--GTGA-------GATCTAACA-------GGAGTGTGG--------ATACCAAATTTGGTTACTCTA-GCCTT-AATAGTCTCTGA--GATTTGTGGATGTGGCGGGG
droPer2	scaffold_64:124570-124744 +		AAA-----------------------TTTGGTTACTCTAGCGT---------------------------------TAA-------------------------------------------------------------------------------------------------TAGTCTT--------------------------------------TAAGATTTGTGGA--TATCCCCA------------------------GATTTTCGTCCTTTGTGGGGGCGAAAGCAGGT----------GT-----------------------------------------------------------------------------------------------------------------------------------------------GGCAAAATTTT---------------------GAAACAAAC-TCGTCAAG--GTCC-------GATATCACA-------GGAGTGTGG--------AT-CAAAATGTGGTTGCTCTA-GCTTT-TATAGTCTGTGA--GAT-----------------
droAna3	scaffold_13250:2311242-2311457 +		CCACTAAAAACTTCTCTAAAGATAAAATTGGTTTTCCAGATATAAATTAGCTATTAAAATAGTTCG------GCATCAAAACTG--------------------------------------------------------------------------------------------------------------------------------------------------TTCCTG-------------------AACTAACGGAACAGAAATATGCAATTTGTGACGACGGTAAGGGGC----------AT-----------------------------------------------------------------------------------------------------------------------------------------------AGCAAAAATTT---------------------TAAGCAAAC-TTGATCTG--CGTG-------GGTATGATA-------AAAATGCAC--------ATACAATAT--------ATTAGGCTCTATATAGTCTCTGA--GAT-----------------
droBip1	scf7180000393219:9517-9692 +		TTAAAAA-------------------TTTGAACTCTCTAGCTC---------------------------------TAA-------------------------------------------------------------------------------------------------AAACTTC--------------------------------------GAAGCT--ATACCAT-------------------T----T---------------------------------------CTGATCAATC------------------------------AGTTATATG---GAAGCTATAGGATA---TAGTCG--GC------CCGGTCGTTCCGACTTACA--------------------------------------------------------------------------TATATATTG--------CG--------------TGC--AA------------------AGGAAAGAAGTGTGTGAGCAAAGTTTCAAGTTGATA-GCTAT-AAA----ACTGA--GA------------------
droKik1	scf7180000302148:17150-17253 +		TTACTAATTA----------------CT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAA-------------------------------------------------------------------------------------------C-AAG--C-A---CGTGC---T-TGGTGTCGGAAGTTCCACTT------------------------------------------------------------------------------GATATGTAC--------TG----------TA--CAT--AG------------------TGCATCAACG---------------TCTTGCAAATA-GCTTT-AAA----ACTGA--G-------------------
droFic1	scf7180000453936:33357-33509 -		TTTAATAT----------------------------------------------------------TTT-----------------------------------------------------------------------------------------------------------------C--------------------------------------T----------------------------------------------------------------------------------------ATGATAAAATTTAATTCGAAATTCGAC---AGTAGTTAAAAAACAAC---ATCTGGAAAAAATCAAGTCG-------------------------------------------------------------------------------ATATGTT---------------------CAAAAACATA--------------TGC--AA------------------AACCTACACATTTTTTGGAAAAGTTTCAGCATGGTA-GCTTT-AAA----ACTAAGAGAC-----------------
droEle1	scf7180000490104:52112-52309 -		CCATTAATAA----------------AT-GTCG----AAGA-------------------------ACT--------------------------------------------------------------------------------------------AAACAAAATATTAAAAAACATC--------------------------------------AAAGTT--ATAATTT-------------GTTTTCA----T------TTAT-----------------------------TTTTTCGATT------------------------------GTTCCTATG---GGAGCTATATGCTA---TAGTCG--TC-CGATCCAGCTCGTTCCGACT------------------------------------------------------------------------------TATATACTA--------CC--------------TGC--AA------------------TAGAAAGACAACTTTTGGGAAAGTTTCATGCAGATA-GCTTT-AAA----ACTGA--GA------------------
droRho1	scf7180000763410:10829-11030 -		TCAAAAAAAA----------------AACGACGAAACACTTTT---------------------------------TAAATTTTG-A-ATA----------------------------------------------------------------------------------------------------------TTGTGTTGTTTTTTATTTTTAATG-----ATTTTTGA--AATT-----------------------------AA-----------------------------AC---A----AT-------------------------AACAAGAA-AGG---AAAGCTAACTTCGAACGGAG------C-CGATCCCGGCCGTTCCGACT------------------------------------------------------------------------------TATATACTG--------CG--------------TGC--AA------------------AGGAAAGAAGGGTTTGTGCAAAGTTTCAATTCGATA-TCTTT-AAA----ACTGA--GA------------------
droBia1	scf7180000302422:1484810-1484987 +		ATTATATG-------------------------ACTATATGTT---------------------------------AAA-------------------------------------------------------------------------------------------------AAACACC--------------------------------------AAAGAT--ATAATTT-------------TTT--TA----A------TTTT-----------------------------TTCATCGATA------------------------------GTTCCTATG---GAAACTATTAGTTA----AGTTG--TC-CGATTCGGCAGAATCCGACT------------------------------------------------------------------------------TATATACTA--------CC--------------TGC--AA------------------TATAAAGAAGACTTTTGGTAAAGTTTTAGCCCGATA-GCTTT-AAA----GCTGA--GA------------------
droTak1	scf7180000414052:56980-57154 -		CCAAAAGT--------------------AGGATGTTATAGGTT---------------------------------CAA-------------------------------------------------------------------------------------------------AAACACC--------------------------------------CAAGAT--ATAATTT-------------TTTTACA----T------TTTT-----------------------------TTTCCCGATT------------------------------GTTCCTATG---AGAGCTATATGATA---TAGTTG--TC-CGATACT-----------------------------------------------------------------------------AC------------GATATACTA--------CC--------------TGC--AA------------------TAGAAAGAAGACTTTTGGGAAAGTTTTATCCCGATA-GCTTG-AAA----ACTGA--GA------------------
droEug1	scf7180000409485:33776-33874 -		GGAACAAT--------------------TCGCATTTGAGGCAC---------------------------------AAT-------------------------------------------------------------------------------------------------AAACCATATATGCATACATCTTCATGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCTGATC---------------TAATCTAATTGTATA-GCTCT-TATAGTTCCTGA--GAT-----------------
dm3	chrX:1039182-1039327 -		CGATAAATA-----------------TTGGGG-A--------------------------------ATTTAATGAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------AAGAATGGGC----------TT----------------------------------------------------------------------------TTTTTTCTGGCTTTTTTTTTTAAACGATAGAAATTTA------------------------------------------------------------------CAAAT-TG--------CGTC-------TGTGTTTCT-------GGAAGCTGA--------ATGCTTAGTCTCAACATTTTA-GCTTT-TAGAATTCCTAA--GAT-----------------
droSim2	2l:23533221-23533404 -		TTGGGCG--------------------------G--------------------------------GTTTAGGGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------TAGAGTGGGA----------GTGACAAAATTTTTTTTGCAAATCGAT-------------------------------------------------------------------------------AGAAATTTAAAAGAGTATCAAAAAAGTGAAAAATATTAACACAT------TTATCAAAAGTG-------------------T--G------GGCCAACAATATATGTATATGTATGTAACAATATG---------------TATCTCAACCTTTTA-GCTTT-TATAGTTCCTGA--GAT-----------------
droSec2	scaffold_71:61405-61588 +		TTGGGCG--------------------------G--------------------------------GTTTAGGGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------TAGAGTGGGA----------GTGACAAAATTTTTTTTGCAAATCGAT-------------------------------------------------------------------------------AGAAATTTAAAAGACTATCAAAAATGTGAAAAATATTAACACAT------TTATCAAAAGTG-------------------T--G------GGCCAACAATATATGTATATGTATGTAACAATATG---------------TATCTCAACCTTTTA-GCTTT-TATAGTTCCTGA--GAT-----------------
droYak3	v2_chrUn_006:105360-105578 +		CCGAAAAAAA----------------TGTGTTGTCTCTTTATT---------------------------------TTAAAATGT-ATATATTTAATTTTTTTGCCTAAAGACCATTACATTAAAACTTTAAAAAACAGAAACAAATTT-TATAATAGACTA------------------------------------------------------------------------------------------------------------------------ATAAAAACA------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAAAATATCAAAACAT------TTTTCAAAAGTG-------------------T--TTATGTGCGTC-------T--GTCTCT-------GTAGTCTGC--------ATGCTTAATCTCAACTTTTTA-GCTT--TATAGTTACTGA--GAC-----------------
droEre2	scaffold_4929:20512678-20512851 +		CTGTTGGAAA----------------TAAAGTTAAATTAACAT---------------------------------GAA-------------------------------------------------------------------------------------------------ATACAAC--------------------------------------TAGACAATGCGAATTCACTTCGCCCTTTCAC--A----------AATAT-------------TCAGAAATAAAGTGGGC----------GT-----------------------------------------------------------------------------------------------------------------------------------------------GGCAACATTTG---------------------GAAATAAAC-TTGCACTG--CGTC-------TATGTCTCT-------GGAAGTTGC--------ATGC----------CATTCTA-GCTCT-TGTAGTTCCTGA--GAT-----------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

CCATTAAAAA----------------TTGGGTGACTCTAGCTT---------------------------------TAA-------------------------------------------------------------------------------------------------AGATTTA--------------------------------------GAAGAT--ATAAATTTATTACTGGCTTTCGA--T----------AATGTT-----------------------------TT---TAAT------------------------------CGATAACAAA---ATAACG-GGA--C-A---AGTCA--TCG-------------------------------------------------------------------------------ATA-TTTGAAGCA--------------------AAAC-TCGATATG--CGCGTGG--TA------------------TGTATACACGGACGTAGGAAAA-------GTCTCTA-GCC-T-TATATCTTCTGA--GAT-----------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................TATTACTGGCTTTCGA--T----------AATGTT-----------------------------TT---....................................................................................................................................................................................................................................................................................................................	25	4	3.00	12	11	0	0	0	1	0
............................................................................................................................................................................................................................................TATTACTGGCTTTCGA--T----------AATGTT-----------------------------T........................................................................................................................................................................................................................................................................................................................	24	4	1.00	4	3	0	0	0	1	0
............................................................................................................................................................................................................................................TATTACTGGCTTTCGA--T----------AATGTT-----------------------------.........................................................................................................................................................................................................................................................................................................................	23	4	0.75	3	2	0	0	0	0	1
............................................................................................................................................................................................................................................TATTACTGGCTTTCGA--T----------AATGTT-----------------------------TT---T...................................................................................................................................................................................................................................................................................................................	26	4	0.75	3	3	0	0	0	0	0
............................................................................................................................................................................................................................................TATTACTGGCTTTCGA--T----------AATGTT-----------------------------TT---TAA.................................................................................................................................................................................................................................................................................................................	28	4	0.50	2	2	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGCA--------------------AAAC-TCGATATG--CGCGTGG--.................................................................................................	27	4	0.25	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................ATTACTGGCTTTCGA--T----------AATGTT-----------------------------.........................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................TATTACTGGCTTTCGA--T----------AATGTT-----------------------------TT---TA..................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................T------------------------------CGATAACAAA---ATAACG-GGA--C-A---AG.................................................................................................................................................................................................................................................	24	18	0.11	2	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................TAAT------------------------------CGATAACAAA---ATAACG-GGA--C-A---AG.................................................................................................................................................................................................................................................	27	17	0.06	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................T------------------------------CGATAACAAA---ATAACG-GGA--C-A---...................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................AT------------------------------CGATAACAAA---ATAACG-GGA--.........................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA--------------------AAAC-TCGATATG--CGCGTG....................................................................................................	21	20	0.05	1	0	0	0	0	0	1

droVir3

CTATTTGTCA--------------AGTTTGATGACTCTAGCTCTTATTATTTACC---------------------AAA-------------------------------------------------------------------------------------------------ATTGCCC--------------------------------------AAAAAC--AGGATAT-------------CGA--TA----T------CGGT-----------------------------TTTATC----------------------------------GATTGCATG---AAAACG-GAG--T-A---AGTTA--TCG-------------------------------------------------------------------------------AGTATCG---------------------GAAACAAAC-TCGTTCTG--CGCA-------GGCACCTGG-------AGCACCTAC--------ATCTAAAATTTTAAGTCTCTA-GCTCT-TATAGGTTCTGA--GAT-----------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................CATG---AAAACG-GAG--T-A---AGTTA--T...........................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................GATTGCATG---AAAACG-GAG--T-A---...................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AG--T-A---AGTTA--TCG-------------------------------------------------------------------------------AGTATCG---------------------G.............................................................................................................................	20	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGTCTCTA-GCTCT-TATAGGT...........................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGTCTCTA-GCTCT-TATAGG............................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TTATTATTTACC---------------------AAA-------------------------------------------------------------------------------------------------ATTGCCC--------------------------------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CA--------------AGTTTGATGACTCTAGCTCTTATTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........A--------------AGTTTGATGACTCTAGCTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CTAGCTCTTATTATTTACC---------------------AAA-------------------------------------------------------------------------------------------------ATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAAATTTTAAGTCTCTA-GCTCT-TA................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................C--------------------------------------AAAAAC--AGGATAT-------------CGA--TA----T------C.........................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........A--------------AGTTTGATGACTCTAGCTCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................GCTCTTATTATTTACC---------------------AAA-------------------------------------------------------------------------------------------------ATTGCCC--------------------------------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TGACTCTAGCTCTTATTATTTACC---------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGTCTCTA-GCTCT-TATAGGTT..........................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAAGTCTCTA-GCTCT-TATAGGT...........................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TTGCCC--------------------------------------AAAAAC--AGGATAT-------------CGA--TA----T------CG........................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

TCTATATAAA----------------TTAGAAGAGTCTGCCTT---------------------------------TAAAATTGT-A-GCATTTATTGCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGAAATGTA-----------------------------AA---T----GT-------------------------ATCAATAATCGA---GAAACG-GAT--T-C---AGTTA--TCG-------------------------------------------------------------------------------ATCAAAT---------------------AAAGCAAAA-TTGATCTG--CGCCAGC--------------------AAAACCTAT--------ATTCCAAATTTGAAGTCTCTA-GCCCT-TATTGTCTTTGA--GAT-----------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

CATACCAA-A----------------TATGGTGTCTCTAGCTA---------------------------------GTATAGTTTTT-GAAATAAACGCTT--------------------------TTTTTAATATAATAAGAAATTATAA-----------------------------------------------------------------------------------------------------------------------------------TAAGAGATTAATATAAT----------CA-----------------------------------------------------------------------------------------------------------------------------------------------GATAATAATTT---------------------GAAATAAAC-TTGATCAC--TA---------CATACTACA-------CGAGTCTAC--------ATAGCAAATTTTGTGGCTCTA-GGTCT-TATAGTCTCCGA--GAT-----------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--TA---------CATACTACA-------CGAGTC.........................................................................	19	4	0.25	1	0	1	0	0	0
..TACCAA-A----------------TATGGTGTCTCTAGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0

dp5

TTATTGAATA----------------ATTATTATTTTTGGATC---------------------------------AAA-------------------------------------------------------------------------------------------------ACATTTATAACATATTTATTATTTTGTTTGTAT-TGCTTTTGGTT-----AAATTAAA--ACTA-----------------------------A----------------------------------------------------------------------AATAATTAA---AAAAAA-G----------AGTGGGATCG-------------------------------------------------------------------------------AAATTTT---------------------GAAAGATAC-GTTTAATA--GTGA-------GATCTAACA-------GGAGTGTGG--------ATACCAAATTTGGTTACTCTA-GCCTT-AATAGTCTCTGA--GATTTGTGGATGTGGCGGGG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAAATTTGGTTACTCTA-GCC.....................................	23	20	1.70	34	0	34	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AATAGTCTCTGA--GATTTGTGGAT.........	24	20	0.65	13	0	0	0	0	0	0	0	0	13	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------GATCTAACA-------GGAGTGTGG--------AT............................................................	21	20	0.40	8	0	8	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------GATCTAACA-------GGAGTGTGG--------A.............................................................	21	20	0.35	7	0	7	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTGA--GATTTGTGGATGT.......	20	7	0.29	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACA-------GGAGTGTGG--------ATACCA........................................................	20	20	0.20	4	0	3	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACA-------GGAGTGTGG--------ATACCAA.......................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTCTGA--GATTTGTGGATGT.......	22	7	0.14	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAAATTTGGTTACTCTA-GCC.....................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--GTGA-------GATCTAACA-------GGAGT..........................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATA--GTGA-------GATCTAACA-------GGAGT..........................................................................	22	12	0.08	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-GCCTT-AATAGTCTCTGA--GA..................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTTGGTTACTCTA-GCC.....................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACA-------GGAGTGTGG--------ATACCAAA......................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTCTGA--GATTTGTGGATC........	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACA-------GGAGTGTGG--------ATACC.........................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAACA-------GGAGTGTGG--------A.............................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

AAA-----------------------TTTGGTTACTCTAGCGT---------------------------------TAA-------------------------------------------------------------------------------------------------TAGTCTT--------------------------------------TAAGATTTGTGGA--TATCCCCA------------------------GATTTTCGTCCTTTGTGGGGGCGAAAGCAGGT----------GT-----------------------------------------------------------------------------------------------------------------------------------------------GGCAAAATTTT---------------------GAAACAAAC-TCGTCAAG--GTCC-------GATATCACA-------GGAGTGTGG--------AT-CAAAATGTGGTTGCTCTA-GCTTT-TATAGTCTGTGA--GAT-----------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................TAA-------------------------------------------------------------------------------------------------TAGTCTT--------------------------------------TAAGATTTGT..............................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC-------GATATCACA-------GGAGTGTGG--------A.............................................................	22	20	0.10	2	0	0	2	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--GTCC-------GATATCACA-------GGAGTGTGG--------..............................................................	23	20	0.10	2	0	0	0	0	0	2
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAG--GTCC-------GATATCACA-------GGAGTGTGG--------A.............................................................	27	20	0.10	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-------GATATCACA-------GGAGTGTGG--------AT-C..........................................................	23	20	0.05	1	0	0	0	0	0	1
...............................TTACTCTAGCGT---------------------------------TAA-------------------------------------------------------------------------------------------------TAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
............................TGGTTACTCTAGCGT---------------------------------TAA-------------------------------------------------------------------------------------------------TAGTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0

droAna3

CCACTAAAAACTTCTCTAAAGATAAAATTGGTTTTCCAGATATAAATTAGCTATTAAAATAGTTCG------GCATCAAAACTG--------------------------------------------------------------------------------------------------------------------------------------------------TTCCTG-------------------AACTAACGGAACAGAAATATGCAATTTGTGACGACGGTAAGGGGC----------AT-----------------------------------------------------------------------------------------------------------------------------------------------AGCAAAAATTT---------------------TAAGCAAAC-TTGATCTG--CGTG-------GGTATGATA-------AAAATGCAC--------ATACAATAT--------ATTAGGCTCTATATAGTCTCTGA--GAT-----------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TTAAAAA-------------------TTTGAACTCTCTAGCTC---------------------------------TAA-------------------------------------------------------------------------------------------------AAACTTC--------------------------------------GAAGCT--ATACCAT-------------------T----T---------------------------------------CTGATCAATC------------------------------AGTTATATG---GAAGCTATAGGATA---TAGTCG--GC------CCGGTCGTTCCGACTTACA--------------------------------------------------------------------------TATATATTG--------CG--------------TGC--AA------------------AGGAAAGAAGTGTGTGAGCAAAGTTTCAAGTTGATA-GCTAT-AAA----ACTGA--GA------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTACTAATTA----------------CT-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAA-------------------------------------------------------------------------------------------C-AAG--C-A---CGTGC---T-TGGTGTCGGAAGTTCCACTT------------------------------------------------------------------------------GATATGTAC--------TG----------TA--CAT--AG------------------TGCATCAACG---------------TCTTGCAAATA-GCTTT-AAA----ACTGA--G-------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTTAATAT----------------------------------------------------------TTT-----------------------------------------------------------------------------------------------------------------C--------------------------------------T----------------------------------------------------------------------------------------ATGATAAAATTTAATTCGAAATTCGAC---AGTAGTTAAAAAACAAC---ATCTGGAAAAAATCAAGTCG-------------------------------------------------------------------------------ATATGTT---------------------CAAAAACATA--------------TGC--AA------------------AACCTACACATTTTTTGGAAAAGTTTCAGCATGGTA-GCTTT-AAA----ACTAAGAGAC-----------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCATTAATAA----------------AT-GTCG----AAGA-------------------------ACT--------------------------------------------------------------------------------------------AAACAAAATATTAAAAAACATC--------------------------------------AAAGTT--ATAATTT-------------GTTTTCA----T------TTAT-----------------------------TTTTTCGATT------------------------------GTTCCTATG---GGAGCTATATGCTA---TAGTCG--TC-CGATCCAGCTCGTTCCGACT------------------------------------------------------------------------------TATATACTA--------CC--------------TGC--AA------------------TAGAAAGACAACTTTTGGGAAAGTTTCATGCAGATA-GCTTT-AAA----ACTGA--GA------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCAAAAAAAA----------------AACGACGAAACACTTTT---------------------------------TAAATTTTG-A-ATA----------------------------------------------------------------------------------------------------------TTGTGTTGTTTTTTATTTTTAATG-----ATTTTTGA--AATT-----------------------------AA-----------------------------AC---A----AT-------------------------AACAAGAA-AGG---AAAGCTAACTTCGAACGGAG------C-CGATCCCGGCCGTTCCGACT------------------------------------------------------------------------------TATATACTG--------CG--------------TGC--AA------------------AGGAAAGAAGGGTTTGTGCAAAGTTTCAATTCGATA-TCTTT-AAA----ACTGA--GA------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATTATATG-------------------------ACTATATGTT---------------------------------AAA-------------------------------------------------------------------------------------------------AAACACC--------------------------------------AAAGAT--ATAATTT-------------TTT--TA----A------TTTT-----------------------------TTCATCGATA------------------------------GTTCCTATG---GAAACTATTAGTTA----AGTTG--TC-CGATTCGGCAGAATCCGACT------------------------------------------------------------------------------TATATACTA--------CC--------------TGC--AA------------------TATAAAGAAGACTTTTGGTAAAGTTTTAGCCCGATA-GCTTT-AAA----GCTGA--GA------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCAAAAGT--------------------AGGATGTTATAGGTT---------------------------------CAA-------------------------------------------------------------------------------------------------AAACACC--------------------------------------CAAGAT--ATAATTT-------------TTTTACA----T------TTTT-----------------------------TTTCCCGATT------------------------------GTTCCTATG---AGAGCTATATGATA---TAGTTG--TC-CGATACT-----------------------------------------------------------------------------AC------------GATATACTA--------CC--------------TGC--AA------------------TAGAAAGAAGACTTTTGGGAAAGTTTTATCCCGATA-GCTTG-AAA----ACTGA--GA------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GGAACAAT--------------------TCGCATTTGAGGCAC---------------------------------AAT-------------------------------------------------------------------------------------------------AAACCATATATGCATACATCTTCATGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCTGATC---------------TAATCTAATTGTATA-GCTCT-TATAGTTCCTGA--GAT-----------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

CGATAAATA-----------------TTGGGG-A--------------------------------ATTTAATGAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------AAGAATGGGC----------TT----------------------------------------------------------------------------TTTTTTCTGGCTTTTTTTTTTAAACGATAGAAATTTA------------------------------------------------------------------CAAAT-TG--------CGTC-------TGTGTTTCT-------GGAAGCTGA--------ATGCTTAGTCTCAACATTTTA-GCTTT-TAGAATTCCTAA--GAT-----------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT-------GGAAGCTGA--------ATGCTTAGT.....................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TAAATA-----------------TTGGGG-A--------------------------------ATTTAATGAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------TGTGTTTCT-------GGAAGCTGA--------ATGCTTAGT.....................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAT-TG--------CGTC-------TGTGTTTCT-------G..............................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAATTTA------------------------------------------------------------------CAAAT-TG--------CGTC-------TGTGTT.........................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TGGGG-A--------------------------------ATTTAATGAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------AA.................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTA------------------------------------------------------------------CAAAT-TG--------CGTC-------TACT...........................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTA------------------------------------------------------------------CAAAT-TG--------CGTC-------TACC...........................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTGGGCG--------------------------G--------------------------------GTTTAGGGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------TAGAGTGGGA----------GTGACAAAATTTTTTTTGCAAATCGAT-------------------------------------------------------------------------------AGAAATTTAAAAGAGTATCAAAAAAGTGAAAAATATTAACACAT------TTATCAAAAGTG-------------------T--G------GGCCAACAATATATGTATATGTATGTAACAATATG---------------TATCTCAACCTTTTA-GCTTT-TATAGTTCCTGA--GAT-----------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................................................................................................................................................................TGCAAATCGAT-------------------------------------------------------------------------------AGAAATTTAAAAGAGT.....................................................................................................................................................................................	27	2	1.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATG---------------TATCTCAACCTTTTA-GCT.....................................	22	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................TTTGCAAATCGAT-------------------------------------------------------------------------------AGAAATTTAAAAGA.......................................................................................................................................................................................	27	5	0.20	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TTTTTGCAAATCGAT-------------------------------------------------------------------------------AGAAATTTAAAA.........................................................................................................................................................................................	27	6	0.17	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TTTTTTGCAAATCGAT-------------------------------------------------------------------------------AGAAA................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TTTTTTTTGCAAATCGAT-------------------------------------------------------------------------------AGAAATT..............................................................................................................................................................................................	25	11	0.09	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................ATCGAT-------------------------------------------------------------------------------AGAAATTTAAAAG........................................................................................................................................................................................	19	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTT-TATAGTTCCTGA--G...................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-GCTTT-TATAGTTCCTGA--GA..................	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGCAAATCGAT-------------------------------------------------------------------------------AGAAATTTA............................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TTGCAAATCGAT-------------------------------------------------------------------------------AGAAATTTA............................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TATAGTTCCTGA--GAT-----------------	16	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TTTTTGCAAATCGAT-------------------------------------------------------------------------------AGAAATTT.............................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TTTTGCAAATCGAT-------------------------------------------------------------------------------AGAAATTT.............................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TTTTTTGCAAATCGAT-------------------------------------------------------------------------------AGAA.................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

TTGGGCG--------------------------G--------------------------------GTTTAGGGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------TAGAGTGGGA----------GTGACAAAATTTTTTTTGCAAATCGAT-------------------------------------------------------------------------------AGAAATTTAAAAGACTATCAAAAATGTGAAAAATATTAACACAT------TTATCAAAAGTG-------------------T--G------GGCCAACAATATATGTATATGTATGTAACAATATG---------------TATCTCAACCTTTTA-GCTTT-TATAGTTCCTGA--GAT-----------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------------------T--G------GGCCAACAATATATGTATATGTA...................................................................................	27	1	1.00	1	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................TTTGCAAATCGAT-------------------------------------------------------------------------------AGAAATTT.............................................................................................................................................................................................	21	20	0.05	1	0	1	0	0

droYak3

CCGAAAAAAA----------------TGTGTTGTCTCTTTATT---------------------------------TTAAAATGT-ATATATTTAATTTTTTTGCCTAAAGACCATTACATTAAAACTTTAAAAAACAGAAACAAATTT-TATAATAGACTA------------------------------------------------------------------------------------------------------------------------ATAAAAACA------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAAAATATCAAAACAT------TTTTCAAAAGTG-------------------T--TTATGTGCGTC-------T--GTCTCT-------GTAGTCTGC--------ATGCTTAATCTCAACTTTTTA-GCTT--TATAGTTACTGA--GAC-----------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAATCTCAACTTTTTA-GCT.....................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CTGTTGGAAA----------------TAAAGTTAAATTAACAT---------------------------------GAA-------------------------------------------------------------------------------------------------ATACAAC--------------------------------------TAGACAATGCGAATTCACTTCGCCCTTTCAC--A----------AATAT-------------TCAGAAATAAAGTGGGC----------GT-----------------------------------------------------------------------------------------------------------------------------------------------GGCAACATTTG---------------------GAAATAAAC-TTGCACTG--CGTC-------TATGTCTCT-------GGAAGTTGC--------ATGC----------CATTCTA-GCTCT-TGTAGTTCCTGA--GAT-----------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dmo_290

scaffold_6482:1662850-1662938 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-18.6	-18.2	-18.1