ID:

dmo_280

 Coordinate:

scaffold_6361:47605-47680 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.4 -23.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Helitron-1_DVirRCHelitron+
mature
  1. dmo_267  scaffold_4844:3458-3480 -
  2. dmo_281  scaffold_6361:40586-40608 +
  3. dmo_280  scaffold_6361:47657-47679 +
  4. scaffold_6482:200879-200901 +
star
  1. dmo_281  scaffold_6361:40534-40555 +
  2. dmo_280  scaffold_6361:47605-47626 +

Sense Strand Reads

TATTGACACTGCCGATGGTCTTGTCAACGGAGCAACTGGCATTTTAATGGACATAGGTTTCAACTCATCCACACCCTCTATTTTGTGGATAAAATTTTTTGAAGAGAGTGTAGGAGCTAATGCGCGTGCTAAATGCGCACATCATCAGGAGCCTTCATGGACTCCAGTACAGAAAA
***********************************.((((((((..(((..(((.((((((.(((((((((((..........)))))))...............))))...)))))).)))..)))...)))))).)).************************************ 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
......................................................................................................AGAGAGTGTAGGAGCTAATGCGC................................................... 23 0 4 7.00 28 21 3 3 1
......................................................................................................AGAGAGTGTAGGAGCTAATGCG.................................................... 22 0 4 1.75 7 7 0 0 0
......................................................................................................AGAGAGTGTAGGAGCTAATGC..................................................... 21 0 4 1.75 7 5 1 1 0
......................................................................................................AGAGAGTGTAGGAGCTAATGCGCGTG................................................ 26 0 4 1.25 5 5 0 0 0
......................................................................................................AGAGAGTGTAGGAGCTAATGCGCG.................................................. 24 0 4 0.50 2 2 0 0 0
..................................................ACATAGGTTTCAACTCATCCAC........................................................................................................ 22 0 2 0.50 1 0 1 0 0
...................................................CATAGGTTTCAACTCATCC.......................................................................................................... 19 0 3 0.33 1 1 0 0 0
............CGATGGTCTTGTCAACGGAGC............................................................................................................................................... 21 0 3 0.33 1 0 1 0 0
..................................................ACATAGGTTTCAACTCATCC.......................................................................................................... 20 0 3 0.33 1 1 0 0 0
....................TTGTCAACGGAGCAACTGGCA....................................................................................................................................... 21 0 3 0.33 1 1 0 0 0
......................................................................................................AGAGAGTGTAGGAGCTAATGCGCGTGC............................................... 27 0 4 0.25 1 1 0 0 0
.......................................................................................................GAGAGTGTAGGAGCTAATGCGC................................................... 22 0 4 0.25 1 1 0 0 0
......................................................................................................ATAGAGTGTAGGAGCTAATGC..................................................... 21 1 4 0.25 1 0 1 0 0
....................................................................................GTGGATAAAATTTTTTGAAGAGAGTGT................................................................. 27 0 4 0.25 1 0 0 1 0
.......................................................................................................GAGAGTGTAGGAGCTAATGCGCGTG................................................ 25 0 4 0.25 1 1 0 0 0
......................................................................................................TTAGAGTGTAGGAGCTAATGCGC................................................... 23 2 4 0.25 1 0 1 0 0
..........................................................................................................AGTGTAGGAGCTAATGCGCGT................................................. 21 0 4 0.25 1 1 0 0 0
..........................................................................................................AGTGTAGGAGCTAATGCGCGTGC............................................... 23 0 4 0.25 1 1 0 0 0
............................................................................................................................................ATCTTCAGGAGCCTTCATGGACC............. 23 2 4 0.25 1 0 1 0 0
.......................................................................................................................................................CCTTCATGGACTCCAGTACAGAAA. 24 0 4 0.25 1 1 0 0 0
....................................................................................................GAAGAGAGTGTAGGAGCTAATGCGCG.................................................. 26 0 4 0.25 1 1 0 0 0
......................................................................................................AGAGAGTGTAGGAGCTAATGCGCGT................................................. 25 0 4 0.25 1 1 0 0 0
......................................................................................................AGAGAGTGTAGAAGCTAATGC..................................................... 21 1 4 0.25 1 1 0 0 0
......................................................................................................AGAGAGTGTAGAAGCTAATGCG.................................................... 22 1 4 0.25 1 1 0 0 0
....................................................................CCACACCCTAGATGTTGTG......................................................................................... 19 3 9 0.22 2 2 0 0 0
..............................................................................................................................TGCTAAATGCGCACATCATCAGGAGCC....................... 27 0 5 0.20 1 1 0 0 0
.................................................................................................................................TAAATGCGCACATCATCAGGAGCCT...................... 25 0 5 0.20 1 1 0 0 0

Anti-sense strand reads

ATAACTGTGACGGCTACCAGAACAGTTGCCTCGTTGACCGTAAAATTACCTGTATCCAAAGTTGAGTAGGTGTGGGAGATAAAACACCTATTTTAAAAAACTTCTCTCACATCCTCGATTACGCGCACGATTTACGCGTGTAGTAGTCCTCGGAAGTACCTGAGGTCATGTCTTTT
************************************.((((((((..(((..(((.((((((.(((((((((((..........)))))))...............))))...)))))).)))..)))...)))))).)).*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V110
male body
..................................TGACCGTAAAATTACCTGTATCCAAA.................................................................................................................... 26 0 3 66.67 200 114 83 3 0
....................................................................................................................................................CTCGGAAGTACCTGAGGTCATGTCTT.. 26 0 4 38.75 155 120 27 8 0
......................................................................................................................................................CGGAAGTACCTGAGGTCATGTCTT.. 24 0 4 31.50 126 92 32 2 0
.....................................................................................................................................................TCGGAAGTACCTGAGGTCATGTCTT.. 25 0 4 25.75 103 69 29 3 2
...............................CGTTGACCGTAAAATTACCTGTATCCAAA.................................................................................................................... 29 0 3 21.00 63 38 25 0 0
...................................................................................................................................................CCTCGGAAGTACCTGAGGTCATGTCTT.. 27 0 4 20.75 83 74 8 0 1
.......................................................................................................................................................GGAAGTACCTGAGGTCATGTCTT.. 23 0 4 12.50 50 42 8 0 0
................................GTTGACCGTAAAATTACCTGTATCCAAA.................................................................................................................... 28 0 3 12.33 37 31 6 0 0
...................................GACCGTAAAATTACCTGTATCCAAA.................................................................................................................... 25 0 3 12.00 36 29 7 0 0
..................................CGACCGTAAAATTACCTGTATCCAAA.................................................................................................................... 26 1 3 6.33 19 0 19 0 0
..................................TGACCGTAAAATTACCTGTATCCAA..................................................................................................................... 25 0 3 5.33 16 15 1 0 0
......................................................................................CCTATTTTAAAAAACTTCTCTCACAT................................................................ 26 0 4 5.00 20 17 3 0 0
....................................................................................................................................................CTCGGAAGTACCTGAGGTCATGTCT... 25 0 4 4.75 19 19 0 0 0
...................................................................................ACACCTATTTTAAAAAACTTCTCTCACAT................................................................ 29 0 4 4.00 16 13 3 0 0
.....................................CCGTAAAATTACCTGTATCCAAA.................................................................................................................... 23 0 4 3.50 14 6 8 0 0
......................................................................................................................................................CGGAAGTACCTGAGGTCATGTCT... 23 0 4 2.75 11 11 0 0 0
.....................................................................................................................................................CCGGAAGTACCTGAGGTCATGTCTT.. 25 1 4 2.50 10 0 10 0 0
....................................................................................CACCTATTTTAAAAAACTTCTCTCACAT................................................................ 28 0 4 2.50 10 7 3 0 0
....................................ACCGTAAAATTACCTGTATCCAAA.................................................................................................................... 24 0 3 2.33 7 4 3 0 0
...ACTGTGACGGCTACCAGAACAGTTGCCT................................................................................................................................................. 28 0 3 2.00 6 5 0 0 1
.......................................................................................................................................................GGAAGTACCTGAGGTCATGTCTTT. 24 0 4 2.00 8 6 2 0 0
..................................TGACCGTAAAATTACCTGTATCCAGA.................................................................................................................... 26 1 3 2.00 6 1 5 0 0
......................................................................................................................................................CGGAAGTACCTGAGGTCATGTCTTT. 25 0 4 1.75 7 3 4 0 0
........................................................................................................................ACGCGCACGATTTACGCGTGTAGTAGT............................. 27 0 4 1.75 7 7 0 0 0
..................................TGACCGTAAAATTACCTGTATC........................................................................................................................ 22 0 3 1.67 5 1 4 0 0
.....................................................................................................................................................TCGGAAGTACCTGAGGTCATGTCT... 24 0 4 1.50 6 6 0 0 0
...................................................................................................................................................CCTCGGAAGTACCTGAGGTCATGTCT... 26 0 4 1.50 6 6 0 0 0
......................................................................................................................................................CGGAAGTACCTGAGGTCATGTATT.. 24 1 4 1.50 6 0 6 0 0
....CTGTGACGGCTACCAGAACAGTTGCCT................................................................................................................................................. 27 0 3 1.33 4 0 4 0 0
.....................................................................................................................................................TCGGAAGTACCTGAGGTCATGTCGT.. 25 1 4 1.25 5 0 5 0 0
.........ACGGCTACCAGAACAGTTGCCTCGT.............................................................................................................................................. 25 0 3 1.00 3 3 0 0 0
......................................CGTAAAATTACCTGTATCCAAA.................................................................................................................... 22 0 4 1.00 4 2 2 0 0
......................CAGTTGCCTCGTTGACCGTAAAATTACCT............................................................................................................................. 29 0 3 1.00 3 2 1 0 0
..................................TGACCGTAAAATTACCTGTATCTAAA.................................................................................................................... 26 1 3 1.00 3 0 3 0 0
.....................................................................................ACCTATTTTAAAAAACTTCTCTCACAT................................................................ 27 0 4 1.00 4 4 0 0 0
...............................CGTTGACCGTAAAATTACCTGTATCCAA..................................................................................................................... 28 0 3 1.00 3 3 0 0 0
.......................................................................................................................................................GGAAGTACCTGAGGTCATGTCT... 22 0 4 1.00 4 4 0 0 0
........................GTTGCCTCGTTGACCGTAAAATTACCT............................................................................................................................. 27 0 3 1.00 3 3 0 0 0
...................................................................................ACACCTATTTTAAAAAACTTCTCTCACA................................................................. 28 0 4 0.75 3 3 0 0 0
......................................................................................CCTATTTTAAAAAACTTCTCTCACGT................................................................ 26 1 4 0.75 3 0 3 0 0
.........................................................................................................................................GTGTAGTAGTCCTCGGAAGTACCT............... 24 0 4 0.75 3 1 0 1 1
......................................................................................................................................CGCGTGTAGTAGTCCTCGGAAGTACCT............... 27 0 4 0.75 3 1 2 0 0
.......................................................................................CTATTTTAAAAAACTTCTCTCACAT................................................................ 25 0 4 0.75 3 2 1 0 0
.....................................................................................................................................................TCGGAAGTACCTGAGGTCATGTCTTT. 26 0 4 0.75 3 2 1 0 0
.................................................................................................................................................GTCCTCGGAAGTACCTGAGGTCATGTCTT.. 29 0 4 0.75 3 2 1 0 0
......................................................................................................................................................CGGAAGTACCTGAGGTCATGTCGT.. 24 1 4 0.75 3 0 3 0 0
.....................................................................................................................................................TCGGAGGTACCTGAGGTCATGTCTT.. 25 1 4 0.75 3 2 0 1 0
................CCAGAACAGTTGCCTCGTTGACCGT....................................................................................................................................... 25 0 3 0.67 2 2 0 0 0
..................................TGACCGTAAAATTACCTGTATCCAAAGT.................................................................................................................. 28 0 3 0.67 2 1 1 0 0
...............ACCAGAACAGTTGCCTCGTTGACCGT....................................................................................................................................... 26 0 3 0.67 2 2 0 0 0
...............................CGTTGACCGTAAAATTACCTGTAT......................................................................................................................... 24 0 3 0.67 2 1 1 0 0
......GTGACGGCTACCAGAACAGTTGCCT................................................................................................................................................. 25 0 3 0.67 2 2 0 0 0
...............................CGTTGACCGTAAAATTACCTGTATCCAGA.................................................................................................................... 29 1 3 0.67 2 0 2 0 0
...ACTGTGACGGCTACCAGAACAGTT..................................................................................................................................................... 24 0 3 0.67 2 2 0 0 0
...............................CGTTGACCGTAAAATTACCTGTATC........................................................................................................................ 25 0 3 0.67 2 1 1 0 0
...................................GACCGTAAAATTACCTGTATCCAA..................................................................................................................... 24 0 3 0.67 2 2 0 0 0
................................GTTGACCGTAAAATTACCTGTAT......................................................................................................................... 23 0 3 0.67 2 2 0 0 0
....................................................................................................................................................TTCGGAAGTACCTGAGGTCATGTCT... 25 1 4 0.50 2 2 0 0 0
.......................................................CCAAAGTTGAGTAGGTGTGGGAGAT................................................................................................ 25 0 2 0.50 1 0 0 0 1
....................................................................................................................................................CTCGGAAGTACCTGAGGTCATGTCTTT. 27 0 4 0.50 2 2 0 0 0
.....................................................................................................................................................TCGGAAGTACCTGAGGTCATGTATT.. 25 1 4 0.50 2 0 2 0 0
.......................................................................................................................................................GGAAGTACCTGAGGTCATGTCGT.. 23 1 4 0.50 2 0 2 0 0
.......................................................................................................................TACGCGCACGATTTACGCGTGTAGTAGT............................. 28 0 4 0.50 2 2 0 0 0
.....................................CCGTAAAATTACCTGTATCCAAAGTT................................................................................................................. 26 0 4 0.50 2 0 2 0 0
....................................................................................................................................................CTCGGAAGTACCTGAGGTCATGTCGT.. 26 1 4 0.50 2 0 2 0 0
....................................................................................................................................................CTCGGAAGTACCTGAGGTCATGTCTTTT 28 0 4 0.50 2 1 1 0 0
...........................................................................................................CACATCCTCGATTACGCGCACGATTT........................................... 26 0 4 0.50 2 1 1 0 0
.............................................................................................................................CACGATTTACGCGTGTAGTAGTCCT.......................... 25 0 4 0.50 2 2 0 0 0
....................................................................................................................................................TTCGGAAGTACCTGAGGTCATGTCTT.. 26 1 4 0.50 2 2 0 0 0
.....................................................................................................................................ACGCGTGTAGTAGTCCTCGGAAGTACCT............... 28 0 4 0.50 2 2 0 0 0
.....................................................................................ACCTATTTTAAAAAACTTCTCTCACA................................................................. 26 0 4 0.50 2 2 0 0 0
...................................................................................................................................................CCTCGGAAGTACCTGAGGTCATGTCTTT. 28 0 4 0.50 2 2 0 0 0
......................................................................................CCTATTTTAAAAAACTTCTCTCACA................................................................. 25 0 4 0.50 2 2 0 0 0
...........................................................................................................................................................GTACCTGAGGTCATGTCTT.. 19 0 4 0.50 2 2 0 0 0
............................................................................................................................................................TACCTGAGGTCATGTCTT.. 18 0 5 0.40 2 2 0 0 0
...................................GACCGTAAAATTACCTGTATTCAAA.................................................................................................................... 25 1 3 0.33 1 0 1 0 0
.................CAGAACAGTTGCCTCGTTGACCGT....................................................................................................................................... 24 0 3 0.33 1 0 1 0 0
..................................TGACCGTAAAATTACCTGTATCCAAAGTT................................................................................................................. 29 0 3 0.33 1 0 0 0 1
...................................GACCGTAAAATTACCTGTAT......................................................................................................................... 20 0 3 0.33 1 1 0 0 0
..................................CGACCGTAAAATTACCTGTAGC........................................................................................................................ 22 2 3 0.33 1 0 1 0 0
.......CGACGGCTACCAGAACAGTTGCCT................................................................................................................................................. 24 1 3 0.33 1 0 1 0 0
..................................CGACCGTAAATTTACCTGTATCCAAA.................................................................................................................... 26 2 3 0.33 1 0 1 0 0
................................GTTGACCGTAAAATTACCTGTATCCAA..................................................................................................................... 27 0 3 0.33 1 1 0 0 0
.........ACGGCTACCAGAACAGTTGCCTC................................................................................................................................................ 23 0 3 0.33 1 1 0 0 0
........GACGGCTACCAGAACAGTTGCCTCGT.............................................................................................................................................. 26 0 3 0.33 1 1 0 0 0
...ACTTTGACGGCTACCAGAACAGTTGCCT................................................................................................................................................. 28 1 3 0.33 1 0 1 0 0
...............................CGTTGACCGTAAAATTACCTGTATCCGA..................................................................................................................... 28 1 3 0.33 1 0 1 0 0
....................................ACCGTAAAATTACCTGTATCCAAAGTT................................................................................................................. 27 0 3 0.33 1 1 0 0 0
...............................CGTTGACCGTAAAATTACCTG............................................................................................................................ 21 0 3 0.33 1 0 1 0 0
................................GTTGACCGTAAAATTACCTGTATC........................................................................................................................ 24 0 3 0.33 1 1 0 0 0
........................GTGGCCTCGTTGACCGTAAAATTACCTGT........................................................................................................................... 29 1 3 0.33 1 0 1 0 0
.................................TTGACCGTAAAATTACCTGTATCCAAA.................................................................................................................... 27 0 3 0.33 1 1 0 0 0
..................................TGACCGTAAAATTACCTGTATCCAAAG................................................................................................................... 27 0 3 0.33 1 0 1 0 0
..................................TGACCGTAAAATTACCTGTATCCAAAA................................................................................................................... 27 1 3 0.33 1 1 0 0 0
...............................CGTTGACCGTAAAATTAC............................................................................................................................... 18 0 3 0.33 1 1 0 0 0
..................................CGACCGTAAAATTACCTGTATCCAGA.................................................................................................................... 26 2 3 0.33 1 0 1 0 0
........................GTTGCCTCGTTGACCGTAAAATTA................................................................................................................................ 24 0 3 0.33 1 1 0 0 0
..................................TGACCGTAAAATTACCTGTAT......................................................................................................................... 21 0 3 0.33 1 0 1 0 0
..................................AGACCGTAAAATTACCTGTATCCAA..................................................................................................................... 25 1 3 0.33 1 1 0 0 0
.........................TTGCCTCGTTGACCGTAAAATTACCT............................................................................................................................. 26 0 3 0.33 1 1 0 0 0
..................................CGACAGTAAAATTACCTGTATCCAAA.................................................................................................................... 26 2 3 0.33 1 0 1 0 0
.............CTACCAGAACAGTTGCCTCGTTGACCGT....................................................................................................................................... 28 0 3 0.33 1 1 0 0 0
...............................TGTTGACCGTAAAATTACCTGTATCCAAA.................................................................................................................... 29 1 3 0.33 1 1 0 0 0
..AACTGTGACGGCTACCAGAACAGTTGCCT................................................................................................................................................. 29 0 3 0.33 1 0 1 0 0
..................................TGACCGTAAAATTACCTGTATCCA...................................................................................................................... 24 0 3 0.33 1 1 0 0 0
................CCAGAACAGTTGCCTCGTTGATCTT....................................................................................................................................... 25 2 3 0.33 1 0 1 0 0
...........GGCTACCAGAACAGTTGCCTCGTTGAC.......................................................................................................................................... 27 0 3 0.33 1 1 0 0 0
...................................GACCGTAAAATTACCTGTATCCAGA.................................................................................................................... 25 1 3 0.33 1 0 1 0 0
..........................TGCCTCGTTGACCGTAAAATTACCTGT........................................................................................................................... 27 0 3 0.33 1 1 0 0 0
.TAACTGTGACGGCTACCAGAACAGTT..................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0
..............TACCAGAACAGTTGCCTCGTTGACCGT....................................................................................................................................... 27 0 3 0.33 1 1 0 0 0
...............................CGTTGACCGTAAAATTACCTGT........................................................................................................................... 22 0 3 0.33 1 1 0 0 0
...................................GACCGCAAAATTCCCTGTATCCAAA.................................................................................................................... 25 2 3 0.33 1 0 1 0 0
..............................................................TGAATAGATGTGGGAGATA............................................................................................... 19 2 3 0.33 1 0 0 0 1
......................CAGTTGCCTCGTTGACCGTAAAAT.................................................................................................................................. 24 0 3 0.33 1 0 1 0 0
...................................GACCGTAAAATTACCTGTATCCAAAG................................................................................................................... 26 0 3 0.33 1 1 0 0 0
..................................TGACTGTAAAATTACCTGTATCCAAA.................................................................................................................... 26 1 3 0.33 1 0 1 0 0
.................................CTGACCGCAAAATTACCTGTATCCAA..................................................................................................................... 26 2 3 0.33 1 1 0 0 0
...................................GACCGTAAAATTACCTGTATCTAAA.................................................................................................................... 25 1 3 0.33 1 0 1 0 0
.........ACGGCTACCAGAACAGTTGCCTCGTT............................................................................................................................................. 26 0 3 0.33 1 1 0 0 0
..................................TGACCGTAAAATTACCTGTATCC....................................................................................................................... 23 0 3 0.33 1 1 0 0 0
................................GTTGACCGTAAAATTACC.............................................................................................................................. 18 0 3 0.33 1 1 0 0 0
...TCTGTGACGGCTACCAGAACAGTTGCCT................................................................................................................................................. 28 1 3 0.33 1 0 1 0 0
............................CCTCGTTGACCGTAAAATTACCTGT........................................................................................................................... 25 0 3 0.33 1 0 1 0 0
...................................GACCGTAAAATTACCTGTATCCAAAGT.................................................................................................................. 27 0 3 0.33 1 1 0 0 0
....TTGTGACGGCTACCAGAACAGTT..................................................................................................................................................... 23 1 3 0.33 1 1 0 0 0
.......................AGTTGCCTCGTTGACCGTAAAATTACCT............................................................................................................................. 28 0 3 0.33 1 1 0 0 0
.....TGTGACGGCTACCAGAACAGTTGCCT................................................................................................................................................. 26 0 3 0.33 1 1 0 0 0
........GACGGCTACCAGAACAGTTGCCT................................................................................................................................................. 23 0 3 0.33 1 1 0 0 0
...............................CGTTGACCGTAAAATTACCTGTATCC....................................................................................................................... 26 0 3 0.33 1 0 1 0 0
..................................TGACCGTAAAATTACCTGTATCCAAACC.................................................................................................................. 28 2 3 0.33 1 0 1 0 0
......GTGACGGCTACCAGAACAGTTGCCTC................................................................................................................................................ 26 0 3 0.33 1 1 0 0 0
....................................ACCGTAAAATTACCTGTATC........................................................................................................................ 20 0 3 0.33 1 1 0 0 0
...................................TACCGTAAAATTACCTGTATC........................................................................................................................ 21 1 3 0.33 1 1 0 0 0
...............................CGTTGACCGTAAAATTACCTGTATCCA...................................................................................................................... 27 0 3 0.33 1 0 1 0 0
..................................TGACCGTAAATTTACCTGTATCCAAA.................................................................................................................... 26 1 3 0.33 1 0 1 0 0
...........................................................................................................................CGCACGATTTACGCGTGTAGTAGTC............................ 25 0 4 0.25 1 1 0 0 0
....................................................................................................................................................CTCGGAAGTACCTGAGGTCATGTC.... 24 0 4 0.25 1 1 0 0 0
......................................................................................................................................................CCGAAGTACCTGAGGTCATGTCTT.. 24 1 4 0.25 1 0 1 0 0
........................................................................................................................................CGTGTAGTAGTCCTCGGAAGTACCGG.............. 26 1 4 0.25 1 0 1 0 0
.....................................................................................................................................................TCGTAAGTACCTGAGGTCATGTCTT.. 25 1 4 0.25 1 1 0 0 0
.....................................................................................................................................................TCGGAAGTACCTGAGGTAATGTCTT.. 25 1 4 0.25 1 0 1 0 0
....................................................................................CACCTATTTTAAAAAACTTCTCTCACA................................................................. 27 0 4 0.25 1 1 0 0 0
....................................................................................................................................................CTCGGAAGTACCCGAGGTCATGTCTT.. 26 1 4 0.25 1 1 0 0 0
.....................................................................................................................................................TCGGAAGTACCTGAGGTCATTTCTT.. 25 1 4 0.25 1 1 0 0 0
.......................................................................................................................................................GGAAGTACCTGAGGTCATGTATT.. 23 1 4 0.25 1 0 1 0 0
......................................................................................................................................................CGGAAGTACCGGAGGTCATGTC.... 22 1 4 0.25 1 1 0 0 0
......................................................................................................................................................CGGAAGTACCTGGGGTCATGTCGT.. 24 2 4 0.25 1 0 1 0 0
...................................................................................................................................................CCTCGGAAGTACCTGAGGTCATGTGTT.. 27 1 4 0.25 1 0 1 0 0
..........................................AAATTACCTGTATCCAAAGTTGAGT............................................................................................................. 25 0 4 0.25 1 1 0 0 0
......................................CGTAAAATTACCTGTATCCAA..................................................................................................................... 21 0 4 0.25 1 1 0 0 0
.....................................CCGTAAAATTACCTGTATCCAAACTAGC............................................................................................................... 28 3 4 0.25 1 0 1 0 0
..................................................................................................................................................TCCTCGGAAGTACCTGAGGTCATGTCTT.. 28 0 4 0.25 1 1 0 0 0
......................................................................................................................................................CGGAAGTACCTGAGGTCATGTTTTT. 25 1 4 0.25 1 0 1 0 0
......................................................................................................................................................CGGAAGTACCTGAGGTCATGTC.... 22 0 4 0.25 1 1 0 0 0
....................................................................................................................................................ATCGGAAGTACCTGAGGTCATGTCTT.. 26 1 4 0.25 1 1 0 0 0
....................................................................................................................................................GTCGGAAGTACCTGAGGTCATGTCTT.. 26 1 4 0.25 1 1 0 0 0
......................................................................................................................................CGCGTGTAGTAGTCCTCGGAAGTACCGG.............. 28 1 4 0.25 1 0 1 0 0
...................................................................................................................................................CCTCGGAAGTACCTGAGGTCATGTATT.. 27 1 4 0.25 1 0 1 0 0
..................................................................................AACACCTATTTTAAAAAACTTCTCTCACA................................................................. 29 0 4 0.25 1 1 0 0 0
......................................................................................................TCTCTCACATCCTCGATTACGCGCAC................................................ 26 0 4 0.25 1 1 0 0 0
.........................................AAAATTACCTGTATCCAAAGTTGAGT............................................................................................................. 26 0 4 0.25 1 1 0 0 0
......................................................................................................................................................GGGAAGTACCTGAGGTCATGTCTT.. 24 1 4 0.25 1 1 0 0 0
......................................................................................................................................................CGGAAGTACCTGAGGTCATGT..... 21 0 4 0.25 1 0 1 0 0
......................................................................................................................................................CGGAAGTACCTGAGGTCATGTCTAT. 25 1 4 0.25 1 0 1 0 0
..........................................................................................................................GCGCACGATTTACGCGTGTAGTAGT............................. 25 0 4 0.25 1 1 0 0 0
......................................................................................................................................................CGGAAGTACCTGAGGTAATGTCGT.. 24 2 4 0.25 1 0 1 0 0
......................................................................................................................................................CGGAAGTACCTGAGGTCATGGCTT.. 24 1 4 0.25 1 0 1 0 0
.......................................................................................................CTCTCACATCCTCGATTACGCGCACGATT............................................ 29 0 4 0.25 1 1 0 0 0
....................................................................................................................................TACGCGTGTAGTAGTCCTCGGAAGTACCT............... 29 0 4 0.25 1 1 0 0 0
...................................................................................................................................................CCTCGGAAGTACCTTAGGTCATGTCTT.. 27 1 4 0.25 1 0 1 0 0
............................................ATTACCTGTATCCAAAGTTGAGT............................................................................................................. 23 0 4 0.25 1 1 0 0 0
.......................................................................................................................................................TTAAGTACCTGAGGTCATGTCTT.. 23 2 4 0.25 1 1 0 0 0
.....................................................................................................................................................CCGGAAGTACCTGAGGTCATGTATT.. 25 2 4 0.25 1 0 1 0 0
...................................................................................................................................TTACGCGTGTAGTAGTCCTCGGAAGTA.................. 27 0 4 0.25 1 1 0 0 0
...................................................................................................................................................TCTCGGAAGTACCTGAGGTCATGTCTT.. 27 1 4 0.25 1 1 0 0 0
...................................................................................................................CGATTACGCGCACGATTTACGCGTGTAGT................................ 29 0 4 0.25 1 1 0 0 0
........................................TAAAATTACCTGTATCCAAAGTT................................................................................................................. 23 0 4 0.25 1 1 0 0 0
.................................................................................................................................................CCCCTCGGAAGTACCTGAGGTCATGTCTT.. 29 2 4 0.25 1 1 0 0 0
....................................................................................................................................................CTCGGAAGTACATGAGGTCATGTCTT.. 26 1 4 0.25 1 1 0 0 0
......................................CGTAAAATTACCTGTATCTAAA.................................................................................................................... 22 1 4 0.25 1 0 1 0 0
...................................................................................................................................................CCTCGGAAGTACCTGAGGTCATGTTTT.. 27 1 4 0.25 1 0 1 0 0
.....................................................................................................................................................ACGGAAGTACCTGAGGTCATGTCTT.. 25 1 4 0.25 1 0 1 0 0
........................................................................................................................................CGTGTAGTAGTCCTCGGAAGT................... 21 0 4 0.25 1 0 1 0 0
.....................................................................................................................................................GCGGAAGTACCTGAGGTCATGTCTT.. 25 1 4 0.25 1 0 1 0 0
........................................................................................................................................CGTGTAGTAGTCCTCGGAAGTACCT............... 25 0 4 0.25 1 1 0 0 0
.....................................................................................................................................................TCGGAAGTACCTGAGGTCATCTCTT.. 25 1 4 0.25 1 0 1 0 0
.....................................................................................................................................................TCGTAAGTACCTGAGGTCATCTTT... 24 3 4 0.25 1 0 1 0 0
...........................................................................................................................CGCACGATTTACGCGTGTAGTAGTCC........................... 26 0 4 0.25 1 0 1 0 0
.....................................................................................................................................................TCGGAAGTACATGAGGTCATGTATT.. 25 2 4 0.25 1 0 1 0 0
......................................................................................CCTATTTTAAAAAAATTCTCTCACAT................................................................ 26 1 4 0.25 1 1 0 0 0
........................................................................................................................................CGTGTAGTAGTCCTCGGAAGTACCTG.............. 26 0 4 0.25 1 1 0 0 0
......................................................................................................................................................CGGAAGTACCTGAGGTTATGTCTT.. 24 1 4 0.25 1 1 0 0 0
...................................................................................................................................................CCTCGGAAGTAACTGAGGTCATGTCTT.. 27 1 4 0.25 1 1 0 0 0
............................................................................................................................GCACGATTTACGCGTGTAGTAGTCCT.......................... 26 0 4 0.25 1 1 0 0 0
....................................................................................................................................................CTCGGAAGTACCTTAGGTCATGTCTT.. 26 1 4 0.25 1 0 1 0 0
......................................................................................................................................................CGAAAGTACCTGAGGTAATGTCTT.. 24 2 4 0.25 1 0 1 0 0
.....................................CCGTAAAATTACCTGTATCCAAT.................................................................................................................... 23 1 4 0.25 1 0 1 0 0
.........................................................................................................................CGCGCACGATTTACGCGTGTAGTAGTC............................ 27 0 4 0.25 1 1 0 0 0
..................................................................................................................................................ACCTCGGAAGTACCTGAGGTCATGTCTT.. 28 1 4 0.25 1 1 0 0 0
......................................................................................................................................CTCGTGTAGTAGTCCTCGGAAGTACCT............... 27 1 4 0.25 1 1 0 0 0
.......................................................................................................................................................GGAAGTACCTGATGTCATGTC.... 21 1 4 0.25 1 1 0 0 0
...................................................................................................................................................CCTCGGAAGTACCTGGGGTCATGTCTT.. 27 1 4 0.25 1 1 0 0 0
..........................................................................GGAGATAAAACACCTATTTTAAAAAACT.......................................................................... 28 0 4 0.25 1 1 0 0 0
........................................................................................................................................................GAAGTACCTGAGGTCATGTCTT.. 22 0 4 0.25 1 1 0 0 0
........................................................................TGGGAGATAAAACACCTATTTT.................................................................................. 22 0 4 0.25 1 1 0 0 0
......................................................................................................................................................CGGAAGTACCTGAGGTCATG...... 20 0 4 0.25 1 0 1 0 0
.........................................................................................................................CGCGCACGATTTACGCGTGTAGTAGT............................. 26 0 4 0.25 1 1 0 0 0
......................................................................................................................................................CGGAAGTACCTGATGTCATGTCTT.. 24 1 4 0.25 1 1 0 0 0
.....................................................................................................................................................TCGGAAGTACCTGAGGTCATCTATT.. 25 2 4 0.25 1 0 1 0 0
...................................................................................................................................................GTTCGGAAGTACCTGAGGTCATGTCT... 26 2 4 0.25 1 1 0 0 0
..............................................................TGAATAGATGTGGGAGATACA............................................................................................. 21 3 5 0.20 1 0 0 0 1
......................................................................................................................................................CGGAACTACCTGAGGTCATGTCTT.. 24 1 5 0.20 1 0 1 0 0
.....................................CCGTAAAATTACCTTTATT........................................................................................................................ 19 2 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6361:47555-47730 + dmo_280 TATTGACACTGCCGATGGTCTTGTCAACGGAGCAACTGG-CATTTTA----------ATGGACATAGGTTTCAACTCATCCA---CACC---------CT-CT-ATTTTGTGGATAAAATTTTTTGAAGAGAGT------GTAGGAGCTAAT-GCGCGTGCTAAATGCGCACATCATCAGGAGCCTTCATGGACTCCAGTACAGAAAA
droVir3 scaffold_9738:8357-8535 - TGTAGATACTGGGGATGGATTAGTTAATGGGGCAACAGG-CATGTTA----------ATGCAAATAGATTTCGATGCATCCAGCACTGC---------CA-TT-ATTTTATGGATGAAATTTTCAGATGATACC------GTAGGAGTACTT-GCTCGCTCAAAGTGTACACATCGTACAGAACCTTTCTGGACCCCAATTCAGAAAA
droGri2 scaffold_15203:1023982-1024163 + TGTAAATACTGGGGATGAATTAGTTTATGGAGCTTAATGGAGTTT-AAGGCAAACGAATACAAATAGATTTCGATGCATCTAACACTCC---------AC-AC-ACTTTTTGGATGAAA-------------GAGTGGAAGTAGGAGTAATT-GCTCGCTTAAAATATACACATCGTACAGAAGGTTCGTGGATCCCCAGTCAGAAAA
droWil2 scf2_1100000004967:4417764-4417942 + TGTAGACACGGCAGATGGTCTTGTGAATGGAGCCACAGG-GACTCTA----------ATGGATATAGATTTTAATACATCCAATCATCC---------TT-TA-ATTCTTTGGATAAAATTTTTAGATGATAGT------GTAGGAGTAAAC-GCTCGAGCTAAACTTCGCCATCGTGCACAAAATTCCTGGACCCCAATTCAGAAAA
dp5 XL_group1a:1863530-1863708 + TGTAGATACATCAGATGGTCTTGTTAACGGAGCCACTGG-TGTTTTA----------ATGCAGATAGATCTCAGCTCATCCAATACTCC---------CG-AA-CTTCTTTGGATACATTTTCTCGAGGAAAGC------GTAGGAGTTAAC-GCACGGTCAAAGCGCAGCCATAGTAACGAATCTTCTTGGACCCCAGTTCAGAAAA
droPer2 scaffold_111:66844-67022 + TGTAGATACATCAGATGGTCTTGTTAACGGAGCCACTGG-TGTTTTA----------ATGCAGATAGATCTCAGCTCATCCAATACTCC---------CG-AA-CTTCTTTGGATACATTTTCTCGAGGAAAGC------GTAGGAGTTAAC-GCACGGTCAAAGCGCAGCCATAGTAACGAATCTTCTTGGACCCCAGTTCAGAAAA
droAna3 scaffold_13230:955293-955480 + TATTGACACAAATGACGGACTTGTAAATGGAGCAACTGG-TCAGCTA----------AAGCAAATTGACCATTGCCTAGTTAATAGCTCAAATTTAATAA-CG-CGACTTTGGATTAATTTTTTTGAGCCCATG------GTTGGTGCAATC-ACCAGATCAAAAGTTCGAAATAGTCCAGATCCCGAATGGACTCCTATAGTAAAAG
droBip1 scf7180000394046:4397-4585 + TATAGACACAAGTGACGGACTTGTAAATGGAGCAACTGG-TCAGCTG----------ATGCAAATTGATCATTGCTTAGTGAATGGCTCAAATTTAGTAA-CGTCGACTTTGGATTAAATTTTTTGAACCCACG------GTTGGTGCTATC-GCCATATCAAAGGTTCGGAACAGTCCGGATCCCGAATGGACTCCAATATTAAAAG
droKik1 scf7180000300685:17813-18000 - TATAGATACAAATGATGGACTGGTAAATGGGGCAACAGG-CCAATTA----------ATGCAGATTGACAACTGCATGGTAAACAACGTTAGATTAGTAA-CA-AAACTTTGGATTAAGTTTTCAGATCCTACA------GTTGGTGCCATG-GCCAGGTCAAAAGTTCGGAGAAATGATCATCCCGATTGGACTCCAATTGAAAAAA
droFic1 scf7180000449649:23101-23283 - TATAGACACCAATGATGGACTGGTAAATGGTGCAACTGG-CGACCTC----------ATGCAAATTGACAGTTGTATGGTAAACGGTTCGCTTTTAGTTA-CA-----GGGAGATTAAGTTTTCTGATCCAACG------GTTGGAGCTATT-GCCAGATCAAAAGTGAGAAGAAATGAGCATCCAAATTGGACACCGATA-AAAAAG
droEle1 scf7180000490719:63469-63647 - TATTGACACCAGTGATGCATTAGTAAACGGAGAAAATGG-TGTACTT----------ATACAGATTGACCAATCACCAAGCGGATCGGT---------AG-CA-ACTCTTCAAATACAATTTATAGAGTCATAA------ATTGGATCCGAA-GCTTGAACAAAAAAAGCAAACAGTTCACACCCGGATTGGACTCCTTTTGCTCAAA
droRho1 scf7180000762816:2922-3100 + TGTAGACACATCAGATGGTCTCGTAAACGGAGCCACTGG-TGTCCTT----------AGGGAGATAGGTTTCAACACGTCCAACTCTCT---------AA-AC-ATTCTTTGGATACAATTTTTAGATGACAGT------ATAGGAGTAGCT-GCACGATCAAAGTGCAGTCATCGCCAAGAGGCTTCATGGACCCCAGTAGTTAAGA
droBia1 scf7180000302059:8300-8473 - TGTAGACACATCAGATGGTCTCGTTAATGGAGCCACAGG-TGTTCTT----------ATGGAGATAGGCTAC-----ATCCAACACTCC---------GA-AT-ATTCTTCGGATAAAATATTTAGATGAAACT------ATAGAAGTTAGT-TCACGATTAAAGTGCAGCCAACGTCAGGAGCCTTCATGGACCCCAGATGTTTAAA
droTak1 scf7180000410710:46-224 + TGTAGACACATCAGATGGTCTCGTAAACGGAGCCACTGG-TGTCCTT----------ATGGAGATAGGTTTCAACACGTCCAACTCTCC---------AA-AA-ATTCTTTGGATACAATTTTTAGATGACAGT------ATAGGAGTAGCT-GCACGATCAAAGTGCAGTCATCGCCAAGAGGCTTCATGGACCCCAGTAGTTAAGA
droEug1 scf7180000405531:489-666 - TGTAGACACATCCAATGGCCTTGTAAACGGAGCCACTGG-TTTTCTT----------AGGGAGATAGGATTCAGTACGTCCAACATTCC---------CG-TT-ATTCTTTGGATACAATTTTTAGATGAAAAT------ATAGGTGTTATA-GCACGATCAAAGTGCAGACATAGACAAGAAGCTTCTTGGACCCCAATC-AGACTA
dm3 chr3L:23629128-23629299 - TGTAGATACACCAGATGGTCTCGTAAACGGAGCCACTGG-TGTCCTT----------AGGGAGATTGGATTCAGCACGTCCAGCACTAT---------TGTAT-ATTTTTTGGATACAATTTTAAGATGAAAGT------ATGGGAGTAAATCGCGCGATC-----GTAGACATTGTG----GTCTTCATGGACCCCGATTCGAAAAT
droSim2 3l:23062262-23062440 - TGTATATACATCAGATGGTCTCGTAAACGGAGCCACTGG-TGTCCTT----------GGGTAGATTGGATTCAGCGCGTCCAACACTCC---------AG-AT-CTTCTTTGGATACAATTTTTAGATGATAGT------ATGGGAGTAAAT-GCGCGATCTAAGCGCAGACATTGCAAAGAGGCTTCATGGACCCCAATTTCGAAAA
droSec2 scaffold_51:126523-126669 - TGTAGATACATCAGATGGTCTCGTAAACGGAGCCACTGG-TGTCCTT----------GGGTAGATTGGATTCAGCGCGTCCAACACTCC---------AG-AT-CTTCTTTGAATACAATTTTTAGATGATAGT------TGGG---------------------------------AAAGAGGCTTCATGGACCCCAATTTCGAAAA
droYak3 v2_chrUn_4776:9955-10133 + TGTAGATACATCAGATGGTCTCGTAAACGGAGCCACTGG-TGTCCTT----------AGGGAGATAGGCTTCAGTACATCCAACACTCC---------AG-AT-CTTCTTTGGATACAATTTTTAGATGAAAGC------ATAGGAGTAAAT-GCGCGTTCTAAGCGCAGACATTATGAGGAGGCTTCTTGGACGCCGATTTCGAAAA
droEre2 scaffold_4784:24246313-24246490 - TGTAGATACATCAGATGTTCTCGTAAGCGGAGCCATTTG-GAGCTTT----------ATGGAGATAGGCTCCAGTACGTCCAACATGCC---------AG-AT-CTTCTTTGGATACAATTTTTAGATGATA-T------GTGGGAGTAAGT-ACGCGATCTATGTGCAGACATTGTGAGGAGGCTCTTTCGACCCCGATTTCGTAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TATTGACACTGCCGATGGTCTTGTCAACGGAGCAACTGG-CATTTTA----------ATGGACATAGGTTTCAACTCATCCA---CACC---------CT-CT-ATTTTGTGGATAAAATTTTTTGAAGAGAGT------GTAGGAGCTAAT-GCGCGTGCTAAATGCGCACATCATCAGGAGCCTTCATGGACTCCAGTACAGAAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................AGAGAGT------GTAGGAGCTAAT-GCGC...................................................2347.00282110033
...............................................................................................................................AGAGAGT------GTAGGAGCTAAT-GCG....................................................2241.757700000
...............................................................................................................................AGAGAGT------GTAGGAGCTAAT-GC.....................................................2141.757500011
...............................................................................................................................AGAGAGT------GTAGGAGCTAAT-GCGCGTG................................................2641.255500000
...............................................................................................................................AGAGAGT------GTAGGAGCTAAT-GCGCG..................................................2440.502200000
.............................................................ACATAGGTTTCAACTCATCCA---C..........................................................................................................................2220.501000010
..............................................................CATAGGTTTCAACTCATCC...............................................................................................................................1930.331100000
............CGATGGTCTTGTCAACGGAGC...............................................................................................................................................................................2130.331000010
.............................................................ACATAGGTTTCAACTCATCC...............................................................................................................................2030.331100000
....................TTGTCAACGGAGCAACTGG-CA......................................................................................................................................................................2130.331100000
...............................................................................................................................AGAGAGT------GTAGGAGCTAAT-GCGCGTGC...............................................2740.251100000
................................................................................................................................GAGAGT------GTAGGAGCTAAT-GCGC...................................................2240.251100000
.............................................................................................................GTGGATAAAATTTTTTGAAGAGAGT------GT..................................................................2740.251000001
................................................................................................................................GAGAGT------GTAGGAGCTAAT-GCGCGTG................................................2540.251100000
...................................................................................................................................AGT------GTAGGAGCTAAT-GCGCGT.................................................2140.251100000
...................................................................................................................................AGT------GTAGGAGCTAAT-GCGCGTGC...............................................2340.251100000
.......................................................................................................................................................................................CCTTCATGGACTCCAGTACAGAAA.2440.251100000
.............................................................................................................................GAAGAGAGT------GTAGGAGCTAAT-GCGCG..................................................2640.251100000
...............................................................................................................................AGAGAGT------GTAGGAGCTAAT-GCGCGT.................................................2540.251100000
..............................................................................................................................................................TGCTAAATGCGCACATCATCAGGAGCC.......................2750.201100000
.................................................................................................................................................................TAAATGCGCACATCATCAGGAGCCT......................2550.201100000
droVir3
TGTAGATACTGGGGATGGATTAGTTAATGGGGCAACAGG-CATGTTA----------ATGCAAATAGATTTCGATGCATCCAGCACTGC---------CA-TT-ATTTTATGGATGAAATTTTCAGATGATACC------GTAGGAGTACTT-GCTCGCTCAAAGTGTACACATCGTACAGAACCTTTCTGGACCCCAATTCAGAAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................TTTCAGATGATACC------GTAGGAGTACTT-.......................................................269114.22102800001059621372221017700000004600502040362566421623620197116430900000000000000000100000
........................................................................................................................TTTCAGATGATACC------GTAGGAGTACT.........................................................25996.56869000022513404620111207000000048007218342823573512213808654360500000000000000000000000
........................................................................................................................TTTCAGATGATACC------GTAGGAGTACTT-GC.....................................................28825.3820300005020000012000000000004252113951220010387290000000000000000000000000
........................................................................................................................TTTCAGATGATACC------GTAGGAGTACTT-G......................................................27810.508400003000000030000000000716956401150511170000000000000000000000000
........................................................................................................................TTTCAGATGATACC------GTAGGAGTAC..........................................................24107.707700000000001010000000500317537423110214430100000000000000000000000
.............................................................................................................................GATGATACC------GTAGGAGTACTT-.......................................................2196.8962000002115223301300000000003000000000000000000000000000000000000000
................................................................TAGATTTCGATGCATCCAGCACT.........................................................................................................................2356.4032007022200000000000001000001300114100023200000000000000000000000
..........................................................................................................................TCAGATGATACC------GTAGGAGTACTT-GC.....................................................2685.13410000001000000000000060011213100530011120102000000000000000000000
.............................................................................................................................GATGATACC------GTAGGAGTACT.........................................................2092.7825000000067140600000000001000000000000000000000000000000000000000
........................................................................................................................TTTCAGATGATACC------GTAGGAGT............................................................22101.6016000010010000000000001002000115011001100000000000000000000000000
..........................................................................................................................TCAGATGATACC------GTAGGAGTACTT-.......................................................2491.2211000000002100200000000001000000000003000100000000000000000000010
..........................................................................................................................TCAGATGATACC------GTAGGAGTACTT-GCT....................................................2781.139000000000000200000000000110200000003000000000000000000000000000
........................................................................................................................TTTCAGATGATACC------GTAGGAGTACTC-.......................................................2691.1110000010000000000000001000010040030000000000000000000000000000000
................................................................TAGATTTCGATGCATCCAGCAC..........................................................................................................................2251.005003000000000000000000000000000010000010000000000000000000000000
..............................................................................................................................ATGATACC------GTAGGAGTACT.........................................................19100.909000010060000000000000002000000000000000000000000000000000000000
.........................................................................................................................TTCAGATGATACC------GTAGGAGTACTT-.......................................................2590.898000000001000000000000000000003100002000100000000000000000000000
..............................................................................................................................ATGATACC------GTAGGAGTACTT-.......................................................20100.808000000007000000000001000000000000000000000000000000000000000000
........................................................................................................................TTTCAGATGATACC------GTAGGAGTACTA-.......................................................26100.707000000000000200000000000001000002000020000000000000000000000000
..........................................................................................................................TCAGATGATACC------GTAGGAGTACTT-G......................................................2580.635000000000000000000001000011000000002000000000000000000000000000
.........................................................................................................................TTCAGATGATACC------GTAGGAGTACT.........................................................2490.565000000002000100000000000000001010000000000000000000000000000000
..........................................................TGCAAATAGATTTCGATGCATCCAGCAC..........................................................................................................................2840.502002000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TTCAGATGATACC------GTAGGAGTACTT-GC.....................................................2780.504000000000000000000000000100001010001000000000000000000000000000
........................................................................................................................TTTCAGATGATACC------GTAGGA..............................................................20100.505000000000000000000000001100110000001000000000000000000000000000
...............................................................................................................................................................TCAAAGTGTACACATCGTACAGAACCTT.....................2880.504000000000000000000000000001000101001000000000000000000000000000
..........................................................TGCAAATAGATTTCGATGCATCCAGC............................................................................................................................2660.503003000000000000000000000000000000000000000000000000000000000000
...............TGGATTAGTTAATGGGGCAACAGG-C.......................................................................................................................................................................2590.444000000000000000000000000010012000000000000000000000000000000000
...................TTAGTTAATGGGGCAACAGG-CATG....................................................................................................................................................................2490.444000000000000000000001000010010100000000000000000000000000000000
.............................................................AAATAGATTTCGATGCATCCAGCACT.........................................................................................................................2650.402000000000000000000002000000000000000000000000000000000000000000
..........................................................................................................................TCAGATGATACC------GTAGGAGTACTT-GCTC...................................................2880.383000000000000000000000000000020000000010000000000000000000000000
............................................................................................................................AGATGATACC------GTAGGAGTACTT-.......................................................2290.333000000010000100000000000000001000000000000000000000000000000000
............................................................................................................................AGATGATACC------GTAGGAGTACT.........................................................2190.333000000012000000000000000000000000000000000000000000000000000000
........................................................................................................................TTTCAGATGATACC------GTAGGAGTACTT-C......................................................2790.333000000000000000000001000000001010000000000000000000000000000000
..........................................................................................................................TCAGATGATACC------GTAGGAGTACT.........................................................2390.333000000000100000000000001000000000000000000000000000000000100000
...............................................................................................................................................................TCAAAGTGTACACATCGTACAGAACCT......................2780.252000000000000000000000000010000010000000000000000000000000000000
...........................................................................................................................................................TCGCTCAAAGTGTACACATCGTACAGA..........................2780.252000000000000000000000000100000100000000000000000000000000000000
..........................................................TGCAAATAGATTTCGATGCATCCAGCA...........................................................................................................................2740.251000000000000000000000000001000000000000000000000000000000000000
...........................................................GCAAATAGATTTCGATGCATCCAGCAC..........................................................................................................................2740.251001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TCGCTCAAAGTGTACACATCGTACAGAA.........................2880.252000000000000000000000000000000001001000000000000000000000000000
...........................................................................................................................CAGATGATACC------GTAGGAGTACTT-GCT....................................................2680.252000000000000000000001000000100000000000000000000000000000000000
...............TGGATTAGTTAATGGGGCAA.............................................................................................................................................................................2090.222000000000000000000000000000000011000000000000000000000000000000
........................................................................................................................TTTCAGATGATACC------GTAGGAGTACTT-A......................................................2790.222000000000000000000000000000000001000010000000000000000000000000
........................................................................................................................TTTCAGATGATACC------GTAGGAGTACTG-.......................................................2690.222000000001000000000000000000000000001000000000000000000000000000
...................TTAGTTAATGGGGCAACAGG-CAT.....................................................................................................................................................................2390.222000000000000000000000000000001100000000000000000000000000000000
.........TGGGGATGGATTAGTTAATGGGGCAA.............................................................................................................................................................................2690.222000000000000000000000000000020000000000000000000000000000000000
....................TAGTTAATGGGGCAACAGG-CATG....................................................................................................................................................................2390.222000000000000000000000000000000100010000000000000000000000000000
................................................................................................................................GATACC------GTAGGAGTACTT-.......................................................18100.202000000000010100000000000000000000000000000000000000000000000000
................................................................TAGATTTCGATGCATCCAGCA...........................................................................................................................2150.201001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TTTCAGATGATACC------GTAGG...............................................................19100.202000000000000000000000000001000000001000000000000000000000000000
..............................................................AATAGATTTCGATGCATCCAGCACT.........................................................................................................................2550.201000000000000000000000000000000100000000000000000000000000000000
...................................................................ATTTCGATGCATCCAGCACT.........................................................................................................................2060.171001000000000000000000000000000000000000000000000000000000000000
....................................................................TTTCGATGCATCCAGCACT.........................................................................................................................1960.171000000000000000000000000000000000001000000000000000000000000000
...................................CAGG-CATGTTA----------ATGCAAATAGATTTCGA......................................................................................................................................2860.171000000000000000000000000001000000000000000000000000000000000000
...........................................................GCAAATAGATTTCGATGCATCCAGC............................................................................................................................2570.141001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................AGATGATACC------GTAGGAGTACTT-GCT....................................................2580.131000000000000100000000000000000000000000000000000000000000000000
...................TTAGTTAATGGGGCAACAGG-CATGT...................................................................................................................................................................2580.131000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................TGGATGAAATTTTCAGATGATACC------GT..................................................................2680.131000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................AGATGATACC------GTAGGAGTACTT-GC.....................................................2480.131000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................CAGATGATACC------GTAGGAGTACTT-GC.....................................................2580.131000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................GATGATACC------GTAGGAGTACTT-G......................................................2280.131000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................TCAGATGATACC------GTAGGAGTACTT-GCC....................................................2780.131000000000000000000000001000000000000000000000000000000000000000
....................TAGTTAATGGGGCAACAGG-CATGT...................................................................................................................................................................2480.131000000000000000000000000000000000001000000000000000000000000000
..TAGATACTGGGGATGGATTAGTTAATG...................................................................................................................................................................................2780.131000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................TCAGATGATACC------GTAGGAGTACTT-GCTCGCT................................................3180.131000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................TTTCAGATGATACC------GTAGGAGTACTT-GT.....................................................2880.131000000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................TTTTCAGATGATACC------GTAGGAGTACTT-.......................................................2790.111000000010000000000000000000000000000000000000000000000000000000
......TACTGGGGATGGATTAGTTAATGGGG................................................................................................................................................................................2690.111000000000000100000000000000000000000000000000000000000000000000
...............................................................................................................................TGATACC------GTAGGAGTACTT-GCTCGC.................................................2590.111000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................TGATACC------GTAGGAGTACTT-GC.....................................................2190.111000000000000000000000001000000000000000000000000000000000000000
......................................................................................................................ATTTTCAGATGATACC------GTAGGAGTACTT-.......................................................2890.111000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................ATGATACC------GTAGGAGTACTT-GC.....................................................2290.111000000000000000000000001000000000000000000000000000000000000000
.............GATGGATTAGTTAATGGGGCAACA...........................................................................................................................................................................2490.111000000000000000000000000000010000000000000000000000000000000000
.........TGGGGATGGATTAGTTAATGGGGCAAC............................................................................................................................................................................2790.111000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................TACC------GTAGGAGTACTT-GCTCGCTCAAAG...........................................2890.111000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................GCTCGCTCAAAGTGTACACATCGTA..............................2590.111000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................CAGATGATACC------GTAGGAGTACT.........................................................2290.111000000001000000000000000000000000000000000000000000000000000000
....................TAGTTAATGGGGCAACAGG-C.......................................................................................................................................................................2090.111000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................ATACC------GTAGGAGTACTT-GC.....................................................1990.111000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................TGATACC------GTAGGAGTACTT-GCT....................................................2290.111000000000000100000000000000000000000000000000000000000000000000
...........................................................................................................................................................TCGCTCAAAGTGTACACATCGTACA............................2590.111000000000000000000000000000010000000000000000000000000000000000
....................TAGTTAATGGGGCAACAGG-CATC....................................................................................................................................................................2390.111000000000000000000000000000010000000000000000000000000000000000
............GGATGGATTAGTTAATGGGGC...............................................................................................................................................................................2190.111000000000000000000000000100000000000000000000000000000000000000
...............TGGATTAGTTAATGGGGCAACAGG-CA......................................................................................................................................................................2690.111000000000000000000000000000010000000000000000000000000000000000
...................TTAGTTAATGGGGCAACAGG-CATC....................................................................................................................................................................2490.111000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................TTTCAGATGATACC------GTAGGAGTAT..........................................................24100.101000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................TTTTCAGATGATACC------GTAGGAGTAC..........................................................25100.101000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................TTTCAGATGATACC------GTAGGAGTACTA-AA.....................................................28100.101000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................TTTCAGATGATACC------GTAGGAGTA...........................................................23100.101000000000000000000000000000000001000000000000000000000000000000
..........................................................................................................................TCAGATGATACC------GTAGGAGT............................................................20100.101000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................TTTCAGATGATACC------GTAGGAGTACA.........................................................25100.101000000000000000000000001000000000000000000000000000000000000000
..........................................................TGCAAATAGATTTCGATG....................................................................................................................................18100.101001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TGAAATTTTCAGATGATACC------GTAGGAG.............................................................27100.101000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................TCGCTCAAAGTGTACACATCGTA..............................23110.091000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................AATTTTCAGATGATACC------GTAG................................................................21110.091000000000000000000000000100000000000000000000000000000000000000
droGri2
TGTAAATACTGGGGATGAATTAGTTTATGGAGCTTAATGGAGTTT-AAGGCAAACGAATACAAATAGATTTCGATGCATCTAACACTCC---------AC-AC-ACTTTTTGGATGAAA-------------GAGTGGAAGTAGGAGTAATT-GCTCGCTTAAAATATACACATCGTACAGAAGGTTCGTGGATCCCCAGTCAGAAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGTAGACACGGCAGATGGTCTTGTGAATGGAGCCACAGG-GACTCTA----------ATGGATATAGATTTTAATACATCCAATCATCC---------TT-TA-ATTCTTTGGATAAAATTTTTAGATGATAGT------GTAGGAGTAAAC-GCTCGAGCTAAACTTCGCCATCGTGCACAAAATTCCTGGACCCCAATTCAGAAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................C-GCTCGAGCTAAACTTCGCCATCG................................24120.17202000
............................................................................................................................................................................ATCGTGCACAAAATTCCTGGACCCCA..........26130.15220000
.....................................................................................................................................................AAC-GCTCGAGCTAAACTTCGCCATCG................................26120.08101000
.................................................................................................................................................................................GCACAAAATTCCTGGACCCCA..........21130.08101000
.....................................................................................................TA-ATTCTTTGGATAAAATTTTTAGA.................................................................................25130.08100010
..............................................................................................................................................................................CGTGCACAAAATTCCTGGACCCCAAT........26130.08101000
............................................................................................................................................................................ATCGTGCACAAAATTCCTGG................20130.08101000
..............................................................................................................................................................................CGTGCACAAAATTCCTGGACCCCA..........24130.08101000
..............................................................................................................................................................................CGTGCACAAAATTCCTGGACCCC...........23130.08101000
.................................................................................................................................................................................GCACAAAATTCCTGGACCCCAATT.......24130.08101000
.............................................................................................................................................................................TCGTGCACAAAATTCCTGGACCCC...........24130.08101000
.............................................................................................................................................................................TCGTGCACAAAATTCCTGGACCCCAA.........26130.08101000
.............................................................................................................................................................................TCGTGCACAAAATTCCTGGACCCCAATT.......28130.08101000
..........................................................................................................................................................................CCATCGTGCACAAAATTCCTGGACCCC...........27130.08101000
..............................................................................................................................................................................CGTGCACAAAATTCCTGGACCC............22130.08101000
.................................................................................................................................................................TAAACTTCGCCATCGTGCACAA.........................22150.07101000
.............................................................................................................................................................GAGCTAAACTTCGCCATCGTG..............................21150.07101000
................................................................................................................................................................CTAAACTTCGCCATCGTGCAC...........................21150.07101000
.........................................................................................................................................................GCTCGAGCTAAACTTCGCCATCG................................23150.07101000
...........................................................................................................................................................TCGAGCTAAACTTCGCCATCGTGCACAA.........................28150.07101000
...........................................................................................................................................................TCGAGCTAAACTTCGCCATCGTGC.............................24150.07101000
.......................................................................................................................................................................................AATTCCTGGACCCCAATTCAGAA..23150.07101000
dp5
TGTAGATACATCAGATGGTCTTGTTAACGGAGCCACTGG-TGTTTTA----------ATGCAGATAGATCTCAGCTCATCCAATACTCC---------CG-AA-CTTCTTTGGATACATTTTCTCGAGGAAAGC------GTAGGAGTTAAC-GCACGGTCAAAGCGCAGCCATAGTAACGAATCTTCTTGGACCCCAGTTCAGAAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................TAGTAACGAATCTTCTTGGACC.............22711.1478049800001380
.............................................................................................................................................................................TAGTAACGAATCTTCTTGGACCC............2378.576004650000900
.............................................................................................................................................................................TAGTAACGAATCTTCTTGGACCCC...........2476.574603600000370
.............................................................................................................................................................................TAGTAACGAATCTTCTTGGACCCCAGT........2764.172501400000920
.............................................................................................................................................................................TAGTAACGAATCTTCTTGGAC..............2173.862701830100320
.............................................................................................................................................................................TAGTAACGAATCTTCTTGGACCCCAG.........2662.501501200000210
.............................................................................................................................................................................TAGTAACGAATCTTCTTGGACCCCA..........2571.1480410000300
............................................................................................................................................................................ATAGTAACGAATCTTCTTGGACC.............2371.1480300000140
..............................................................................................................................................................................AGTAACGAATCTTCTTGGACCC............2270.8660600000000
..............................................A----------ATGCAGATAGATCTCAGCTCATCCA..............................................................................................................................2650.8040100000300
......TACATCAGATGGTCTTGTTAACGGAG................................................................................................................................................................................2680.6350210002000
..............................................A----------ATGCAGATAGATCTCAGCTCATC................................................................................................................................2450.6030300000000
........................................................................................................................................................................AGCCATAGTAACGAATCTTCTTGG................2470.5740000000400
..............................................................................................................................................................................AGTAACGAATCTTCTTGGACC.............2170.5740400000000
..............................................................................................................TGGATACATTTTCTCGAGGAAAGC------G...................................................................2580.5040400000000
..............................................A----------ATGCAGATAGATCTCAGCTCAT.................................................................................................................................2360.5030300000000
..........TCAGATGGTCTTGTTAACGGAGCCAC............................................................................................................................................................................2680.5040020101000
..........................................TTTTA----------ATGCAGATAGATCTCAGCTCAT.................................................................................................................................2760.5030000000300
..........TCAGATGGTCTTGTTAACGGAG................................................................................................................................................................................2280.5040100001020
........................TAACGGAGCCACTGG-TGTTTTA----------ATG....................................................................................................................................................2580.5040000000400
..............................................................................................................................................................GTCAAAGCGCAGCCATAGTA..............................2070.4330000000300
...................................................................................TACTCC---------CG-AA-CTTCTTTGGATACATTT.......................................................................................2770.4330300000000
.............................................................................................................................................................................TAGTAACGAATCTTCTTGGA...............2070.4330210000000
.....................................................................................................................ATTTTCTCGAGGAAAGC------GTAGG...............................................................2270.4330300000000
..........................................TTTTA----------ATGCAGATAGATCTCAGCTCATC................................................................................................................................2850.4020100001000
..........................................................TGCAGATAGATCTCAGCTCATCC...............................................................................................................................2350.4020200000000
..............................................A----------ATGCAGATAGATCTCAGCTCATCCAA.............................................................................................................................2750.4020100000100
..............................................A----------ATGCAGATAGATCTCAGCTCATCC...............................................................................................................................2550.4020200000000
...........................................................................................................CTTTGGATACATTTTCTCGAGG...............................................................................2280.3830200000100
..........TCAGATGGTCTTGTTAACGGAGC...............................................................................................................................................................................2380.3830200100000
............................................................................................................TTTGGATACATTTTCTCGAGGAAAGC------....................................................................2680.3830000001200
..........TCAGATGGTCTTGTTAACGGAGCC..............................................................................................................................................................................2480.3830200001000
.............................................................................................................................................................................TAGTAACGAATCTTCTTGGACCCCAGTTC......2960.3320200000000
..............................................A----------ATGCAGATAGATCTCAGCTCA..................................................................................................................................2260.3320200000000
............................................................................................................................................................................ATAGTAACGAATCTTCTTGGACCCCAGT........2860.3320000000200
............................................................................................................................................................................ATAGTAACGAATCTTCTTGGACCCCAG.........2760.3320100000100
.....................................................................................................................ATTTTCTCGAGGAAAGC------GTAGGA..............................................................2370.2920100000100
......................................................................................TCC---------CG-AA-CTTCTTTGGATACATTT.......................................................................................2470.2920200000000
..............................................................................................................................................................................AGTAACGAATCTTCTTGGACCCCA..........2470.2920200000000
.........................................................................................................................................................................GCCATAGTAACGAATCTTCTTGGACCC............2770.2920110000000
...................................................................................TACTCC---------CG-AA-CTTCTTTGGATAC...........................................................................................2370.2920200000000
...................................................................................................................ACATTTTCTCGAGGAAAGC------GTAG................................................................2370.2920000000020
........................................................................................................................................................................AGCCATAGTAACGAATCTTCTTGGACC.............2770.2920200000000
...............................................................................................................................................................................GTAACGAATCTTCTTGGAC..............1970.2921100000000
........................................................................................................................................................................AGCCATAGTAACGAATCTTCTTGGACCC............2870.2920200000000
............................................................................................................................................GTAGGAGTTAAC-GCACGGTCAA.............................................2270.2920000000200
.............................................................................................................................................................................TAGTAACGAATCTTCTTGGACCCCAC.........2670.2920200000000
............................................................................................................................................................................ATAGTAACGAATCTTCTTGGACCCC...........2570.2920100000100
.....................................................................................................................ATTTTCTCGAGGAAAGC------GTAGGAG.............................................................2470.2920100000100
......................................................................................................................TTTTCTCGAGGAAAGC------GTAGG...............................................................2170.2920100000010
..............................................................................................................................................................................AGTAACGAATCTTCTTGGACCCC...........2370.2920200000000
.....................................................................................CTCC---------CG-AA-CTTCTTTGGATAC...........................................................................................2170.2920200000000
.............................................................................................................................................................................TAGTAACGAATCTTCTTGG................1970.2920200000000
..................................................................................................CG-AA-CTTCTTTGGATACATTT.......................................................................................2180.2520000000200
...................................................................................................G-AA-CTTCTTTGGATACATTTTCTC...................................................................................2480.2520200000000
............................................................................................................TTTGGATACATTTTCTCGAGGAAAGC------G...................................................................2780.2520200000000
........................TAACGGAGCCACTGG-TGTTTTA----------ATGCA..................................................................................................................................................2780.2520000000200
..........TCAGATGGTCTTGTTAACGGAGCCA.............................................................................................................................................................................2580.2520000002000
...........CAGATGGTCTTGTTAACGGA.................................................................................................................................................................................2080.2520000002000
..........................................................................................................TCTTTGGATACATTTTCTCGAGG...............................................................................2380.2520100000010
............................................................................................................TTTGGATACATTTTCTCGAGGA..............................................................................2280.2520200000000
..........................................................................................................TCTTTGGATACATTTTCTCGAG................................................................................2290.2220200000000
................GGTCTTGTTAACGGAGCCACTGG-........................................................................................................................................................................2390.2220100001000
...............TGGTCTTGTTAACGGAGCCACTG..........................................................................................................................................................................2390.2220200000000
.............................................TA----------ATGCAGATAGATCTCAGCTCATC................................................................................................................................2550.2010100000000
..............................................A----------ATGCAGATAGATCTCAGCTCATCCAATA...........................................................................................................................2950.2010100000000
..........................................................TGCAGATAGATCTCAGCTCATCCAAT............................................................................................................................2650.2010100000000
.............................................TA----------ATGCAGATAGATCTCAGCTCATCCAA.............................................................................................................................2850.2010100000000
...............................................................ATAGATCTCAGCTCATCCAATACTCC---------..............................................................................................................2650.2010010000000
....................................................................TCTCAGCTCATCCAATACTCC---------CG-AA-C.......................................................................................................2660.1710100000000
.........................................................ATGCAGATAGATCTCAGCTCAT.................................................................................................................................2260.1710100000000
..............................................................................................................................................................................AGTAACGAATCTTCTTGGACCCCAGT........2660.1710100000000
......................................................................TCAGCTCATCCAATACTCC---------CG-AA-CT......................................................................................................2560.1710100000000
.............................................................................................................................................................................TAGTAACGAATCTTCTTGGACCCCAGC........2760.1710100000000
.............................................TA----------ATGCAGATAGATCTCAGCTCAT.................................................................................................................................2460.1710100000000
...............................................................ATAGATCTCAGCTCATCCAATA...........................................................................................................................2260.1710100000000
....................................................................TCTCAGCTCATCCAATACTCC---------C.............................................................................................................2260.1710100000000
......................................................................TCAGCTCATCCAATACTCC---------CG-...........................................................................................................2160.1710100000000
............................................TTA----------ATGCAGATAGATCTCAGCTCA..................................................................................................................................2460.1710100000000
....................................................................TCTCAGCTCATCCAATACTCC---------CG-AA-CT......................................................................................................2760.1710100000000
...............................................................................................................................................................................GTAACGAATCTTCTTGGACCCCAGT........2560.1710100000000
.....................................................................CTCAGCTCATCCAATACTCC---------CG-AA-........................................................................................................2460.1710100000000
.......................................................................CAGCTCATCCAATACTCC---------CG-AA-CT......................................................................................................2460.1710100000000
......................................................................TCAGCTCATCCAATACTCC---------CG-AA-........................................................................................................2360.1710100000000
...................................................................................TACTCC---------CG-AA-CTTCTTTGGATACATT........................................................................................2670.1410100000000
........................................................................................................................................................................AGCCATAGTAACGAATCTTCTTG.................2370.1410100000000
............................................................................CATCCAATACTCC---------CG-AA-CTT.....................................................................................................2070.1410000000010
................................................................................................................................................................................TAACGAATCTTCTTGGACCCCAG.........2370.1410100000000
..........................................................................................................................................................................CCATAGTAACGAATCTTCTTG.................2170.1410100000000
...............................................................................................................................................................TCAAAGCGCAGCCATAGTAAC............................2170.1410010000000
...................................................................................TACTCC---------CG-AA-CTTCTTTGG...............................................................................................1970.1410100000000
......................................................................................TCC---------CG-AA-CTTCTTTGGATACATTTTC.....................................................................................2670.1410100000000
.............................................................................................................................................TAGGAGTTAAC-GCACGGTCAAAGCG.........................................2570.1410100000000
..........................................................................................................................CTCGAGGAAAGC------GTAGGA..............................................................1870.1410100000000
.....................................................................................CTCC---------CG-AA-CTTCTTTGGATACA..........................................................................................2270.1410100000000
.........................................................................................................................TCTCGAGGAAAGC------GTAGGAGTTAAC-.......................................................2570.1410100000000
..............................................................................................................................................................................AGTAACGAATCTTCTTGGA...............1970.1410100000000
............................................................................................................................................................................ATAGTAACGAATCTTCTTGGACCC............2470.1410100000000
.........................................................................................................................TCTCGAGGAAAGC------GTAGGAGTTAAA-.......................................................2570.1410100000000
.............................................................................................................................................................................TAGTAACGAATCTTCTTGGACT.............2270.1410000000010
.........................................................................................................................TCTCGAGGAAAGC------GTAGGA..............................................................1970.1410000000010
.........................................................................................................................TCTCGAGGAAAGC------GTAGGAGTTA..........................................................2370.1410100000000
.............................................................................................................................................TAGGAGTTAAC-GCACGGTCAAAGCGCA.......................................2770.1410100000000
.............................................................................................................................................................................TAGTAACGAATCTTCTTGGACA.............2270.1410100000000
.....................................................................................................................................................................................AATCTTCTTGGACCCCAGTTC......2170.1410000000100
.............................................................................................................................................TAGGAGTTAAC-GCACGGTCAAAGC..........................................2470.1410100000000
........................................................................................................................................................................AGCCATAGTAACGAATCTTCTTGGA...............2570.1410010000000
.........................................................................................................................TCTCGAGGAAAGC------GTAGGAGTTAAC-G......................................................2670.1410000001000
.............................................................................................................................................TAGGAGTTAAC-GCACGGTCAAAA...........................................2370.1410000000010
..........................................................................................................................................................................CCATAGTAACGAATCTTCTTGGACCC............2670.1410100000000
..................................................................................ATACTCC---------CG-AA-CTTCTTTGG...............................................................................................2070.1410100000000
............................................................................................................................................................................ATAGTAACGAATCTTCTTGGACA.............2370.1410100000000
........................TAACGGAGCCACTGG-TGTTTTA----------ATGC...................................................................................................................................................2680.1310100000000
...................................................................................................................................................TTAAC-GCACGGTCAAAGCGCAGC.....................................2380.1310100000000
............................................................................................................TTTGGATACATTTTCTCGAGGAAAA...........................................................................2580.1310000100000
........CATCAGATGGTCTTGTTAACGGAGCA..............................................................................................................................................................................2680.1310100000000
.................................................................................................................................................................................AACGAATCTTCTTGGACCCCA..........2180.1310100000000
..........................................TTTTA----------ATGCAGATAGATCTCAGC.....................................................................................................................................2380.1310100000000
...................................................................................................G-AA-CTTCTTTGGATACATTTTC.....................................................................................2280.1310100000000
.....................................GG-TGTTTTA----------ATGCAGATAGATC..........................................................................................................................................2280.1310100000000
..........TCAGATGGTCTTGTTAACGGAGA...............................................................................................................................................................................2380.1310100000000
...............................................................................................................GGATACATTTTCTCGAGGAAAGC------GT..................................................................2580.1310100000000
.............................................................................................................TTGGATACATTTTCTCGAGGAAAG...........................................................................2480.1310100000000
............................................................................................................TTTGGATACATTTTCTCGAGGAAA............................................................................2480.1310100000000
.........................................................................................................TTCTTTGGATACATTTTCTCGAGGA..............................................................................2580.1310100000000
...........CAGATGGTCTTGTTAACGGAG................................................................................................................................................................................2180.1310000100000
TGTAGATACATCAGATGGT.............................................................................................................................................................................................1980.1310100000000
..............................................................................................................TGGATACATTTTCTCGAGGAAAGC------....................................................................2480.1310100000000
......TACATCAGATGGTCTTGTTAACGGAGC...............................................................................................................................................................................2780.1310100000000
........CATCAGATGGTCTTGTTAACGG..................................................................................................................................................................................2280.1310000000010
...................................................................................................G-AA-CTTCTTTGGATACATTTTCTCGAG................................................................................2780.1310100000000
....................................TGG-TGTTTTA----------ATGCAGATAGATCTCAGC.....................................................................................................................................2880.1310100000000
..........................................................................................................TCTTTGGATACATTTTCTCGAGGAAAGC------....................................................................2880.1310100000000
..........................................................................................................TCTTTGGATACATTTTCTCGAGGA..............................................................................2480.1310100000000
.............................................................................................................TTGGATACATTTTCTCGAGGAAAGC------G...................................................................2680.1310100000000
....................................................................................................................................................TAAC-GCACGGTCAAAGCGCAGCC....................................2380.1310100000000
.............................................................................................................TTGGATACATTTTCTCGAGGAA.............................................................................2280.1310100000000
............................................................................................................TTTGGATACATTTTCTCGAGG...............................................................................2180.1310100000000
................................................................................................................................................................................TAACGAATCTTCTTGGACCCC...........2180.1310100000000
..........................................TTTTA----------ATGCAGATAGATCTC........................................................................................................................................2080.1310000100000
..........................................................................................................TCTTTGGATACATTTTCTCGAGGAA.............................................................................2580.1310100000000
...................CTTGTTAACGGAGCCACTGG-........................................................................................................................................................................2090.1110100000000
..................TCTTGTTAACGGAGCCACTG..........................................................................................................................................................................2090.1110100000000
................GGTCTTGTTAACGGAGCCACTG..........................................................................................................................................................................2290.1110100000000
...........................................................................................................CTTTGGATACATTTTCTCGA.................................................................................2090.1110100000000
..................TCTTGTTAACGGAGCCACTGG-TG......................................................................................................................................................................2390.1110100000000
...............TGGTCTTGTTAACGGAGCCACTGG-TA......................................................................................................................................................................2690.1110000001000
.........................................................................................................TTCTTTGGATACATTTTCTCG..................................................................................2190.1110100000000
..................TCTTGTTAACGGAGCCACTGG-TA......................................................................................................................................................................2390.1110100000000
...............TGGTCTTGTTAACGGAAAA..............................................................................................................................................................................19200.0510100000000
droPer2
TGTAGATACATCAGATGGTCTTGTTAACGGAGCCACTGG-TGTTTTA----------ATGCAGATAGATCTCAGCTCATCCAATACTCC---------CG-AA-CTTCTTTGGATACATTTTCTCGAGGAAAGC------GTAGGAGTTAAC-GCACGGTCAAAGCGCAGCCATAGTAACGAATCTTCTTGGACCCCAGTTCAGAAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................AGCCATAGTAACGAATCTTCTTG.................23200.051010000
..........TCAGATGGTCTTGTTAACGGA.................................................................................................................................................................................21200.051000001
..........................................................TGCAGATAGATCTCAGCTCAT.................................................................................................................................21200.051010000
......................................................................................TCC---------CG-AA-CTTCTTTGGATACATTTTCT....................................................................................27200.051010000
...................................................................................................................ACATTTTCTCGAGGAAAGC------GTAGG...............................................................24200.051010000
........................................................................................................................................................................................CTTCTTGGACCCCAGTTCAGA...21200.051100000
droAna3
TATTGACACAAATGACGGACTTGTAAATGGAGCAACTGG-TCAGCTA----------AAGCAAATTGACCATTGCCTAGTTAATAGCTCAAATTTAATAA-CG-CGACTTTGGATTAATTTTTTTGAGCCCATG------GTTGGTGCAATC-ACCAGATCAAAAGTTCGAAATAGTCCAGATCCCGAATGGACTCCTATAGTAAAAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................GTTCGAAATAGTCCAGATCCCGA....................23201.753517180000
.....................................................................................................................................................................GTTCGAAATAGTCCAGATCCCGAA...................24200.7515960000
.....................................................................................................................................................................GTTCGAAATAGTCCAGATCCC......................21200.70140140000
.....................................................................................................................................................................GTTCGAAATAGTCCAGATCCCGAATG.................26200.306330000
.....................................................................................................................................................................GTTCGAAATAGTCCAGATCC.......................20200.306060000
....................TTGTAAATGGAGCAACTGG-TCAG....................................................................................................................................................................23200.255500000
...................................................................................................................................................................AAGTTCGAAATAGTCCAGATCCC......................23200.204040000
....................TTGTAAATGGAGCAACTGG-TCAGC...................................................................................................................................................................24200.204310000
.....................................................................................................................................................................GTTCGAAATAGTCCAGATCCCGAATGG................27200.204400000
...................................................................................................................................................................AAGTTCGAAATAGTCCAGATCCCGA....................25200.153111000
.....................................................................................................................................................................GTTCGAAATAGTCCAGATCCCG.....................22200.153120000
.....................................................................................................................................................................GTTCGAAATAGTCCAGATCCCGAATGGA...............28200.102200000
....................TTGTAAATGGAGCAACTGG-TCA.....................................................................................................................................................................22200.102020000
.....................................................................................................................................................................GTTCGAAATAGTCCAGATCCCGAAA..................25200.102200000
.....................TGTAAATGGAGCAACTGG-TCAGC...................................................................................................................................................................23200.102200000
..............................................................................................................................................................................AGTCCAGATCCCGAATGGAC..............20200.102020000
..TTGACACAAATGACGGACTTGTAA......................................................................................................................................................................................24200.102200000
.......................................................................................................................................................................TCGAAATAGTCCAGATCCCGAATGGAC..............27200.102020000
..TTGACACAAATGACGGACTTGTA.......................................................................................................................................................................................23200.102110000
.ATTGACACAAATGACGGAC............................................................................................................................................................................................19200.051010000
.....................................................................................................................................................................GTTCGAAATAGTCCAGATCCCGAAAA.................26200.051100000
.....................................................................................................................................................................GTTCGAAATAGTCCAGATC........................19200.051010000
.........................................................................................................................................................................................CGAATGGACTCCTATAGTAA...20200.051010000
....................TTGTAAATGGAGCAACTGG-TCAGCT..................................................................................................................................................................25200.051100000
...................................................................................................................................................................AAGTTCGAAATAGTCCAGATCCCGAAAA.................28200.051010000
.....................................................................................................................................................................GTTCGAAATAGTCCAGATCCCGAT...................24200.051010000
......................................................................................................................................................................TTCGAAATAGTCCAGATCCCGA....................22200.051100000
....................TTGTAAATGGAGCAACTGG-TCAGCC..................................................................................................................................................................25200.051010000
.................................................................................................................................................................AAAAGTTCGAAATAGTCCAGATCCC......................25200.051010000
.....ACACAAATGACGGACTTGTAAATGGAGC...............................................................................................................................................................................28200.051010000
.......................................................................................................................................................................TCGAAATAGTCCAGATCCCGAATG.................24200.051100000
................................................................................................................................................................................TCCAGATCCCGAATGGAC..............18200.051010000
.....................TGTAAATGGAGCAACTGG-TCAGCTA----------.......................................................................................................................................................25200.051100000
................GGACTTGTAAATGGAGCAACTGG-T.......................................................................................................................................................................24200.051000010
.....................TGTAAATGGAGCAACTGG-TCA.....................................................................................................................................................................21200.051100000
...............................................................................................................................................................TCAAAAGTTCGAAATAGTCCAGATCCCGA....................29200.051100000
..................................................................................................................................................................AAAGTTCGAAATAGTCCAGATC........................22200.051010000
..................................................................................................................................................................AAAGTTCGAAATAGTCCAGATCCC......................24200.051010000
.............................................................................................................................................................................TAGTCCAGATCCCGAATGGAC..............21200.051010000
.................................................................................................................................................................AAAAGTTCGAAATAGTCCAGATCCCGAA...................28200.051010000
........................................TCAGCTA----------AAGCAAATTGACCATTGC.....................................................................................................................................25200.051010000
..........................................................................................................................................................................AAATAGTCCAGATCCCGAATGG................22200.051010000
........................AAATGGAGCAACTGG-TCAGCTA----------AAGCA..................................................................................................................................................27200.051100000
..TTGACACAAATGACGGAC............................................................................................................................................................................................18200.051010000
droBip1
TATAGACACAAGTGACGGACTTGTAAATGGAGCAACTGG-TCAGCTG----------ATGCAAATTGATCATTGCTTAGTGAATGGCTCAAATTTAGTAA-CGTCGACTTTGGATTAAATTTTTTGAACCCACG------GTTGGTGCTATC-GCCATATCAAAGGTTCGGAACAGTCCGGATCCCGAATGGACTCCAATATTAAAAGSizeHit CountTotal NormTotal
No Reads
droKik1
TATAGATACAAATGATGGACTGGTAAATGGGGCAACAGG-CCAATTA----------ATGCAGATTGACAACTGCATGGTAAACAACGTTAGATTAGTAA-CA-AAACTTTGGATTAAGTTTTCAGATCCTACA------GTTGGTGCCATG-GCCAGGTCAAAAGTTCGGAGAAATGATCATCCCGATTGGACTCCAATTGAAAAAASizeHit CountTotal NormTotal
No Reads
droFic1
TATAGACACCAATGATGGACTGGTAAATGGTGCAACTGG-CGACCTC----------ATGCAAATTGACAGTTGTATGGTAAACGGTTCGCTTTTAGTTA-CA-----GGGAGATTAAGTTTTCTGATCCAACG------GTTGGAGCTATT-GCCAGATCAAAAGTGAGAAGAAATGAGCATCCAAATTGGACACCGATA-AAAAAGSizeHit CountTotal NormTotal
No Reads
droEle1
TATTGACACCAGTGATGCATTAGTAAACGGAGAAAATGG-TGTACTT----------ATACAGATTGACCAATCACCAAGCGGATCGGT---------AG-CA-ACTCTTCAAATACAATTTATAGAGTCATAA------ATTGGATCCGAA-GCTTGAACAAAAAAAGCAAACAGTTCACACCCGGATTGGACTCCTTTTGCTCAAASizeHit CountTotal NormTotal
No Reads
droRho1
TGTAGACACATCAGATGGTCTCGTAAACGGAGCCACTGG-TGTCCTT----------AGGGAGATAGGTTTCAACACGTCCAACTCTCT---------AA-AC-ATTCTTTGGATACAATTTTTAGATGACAGT------ATAGGAGTAGCT-GCACGATCAAAGTGCAGTCATCGCCAAGAGGCTTCATGGACCCCAGTAGTTAAGASizeHit CountTotal NormTotal
No Reads
droBia1
TGTAGACACATCAGATGGTCTCGTTAATGGAGCCACAGG-TGTTCTT----------ATGGAGATAGGCTAC-----ATCCAACACTCC---------GA-AT-ATTCTTCGGATAAAATATTTAGATGAAACT------ATAGAAGTTAGT-TCACGATTAAAGTGCAGCCAACGTCAGGAGCCTTCATGGACCCCAGATGTTTAAASizeHit CountTotal NormTotal
No Reads
droTak1
TGTAGACACATCAGATGGTCTCGTAAACGGAGCCACTGG-TGTCCTT----------ATGGAGATAGGTTTCAACACGTCCAACTCTCC---------AA-AA-ATTCTTTGGATACAATTTTTAGATGACAGT------ATAGGAGTAGCT-GCACGATCAAAGTGCAGTCATCGCCAAGAGGCTTCATGGACCCCAGTAGTTAAGASizeHit CountTotal NormTotal
No Reads
droEug1
TGTAGACACATCCAATGGCCTTGTAAACGGAGCCACTGG-TTTTCTT----------AGGGAGATAGGATTCAGTACGTCCAACATTCC---------CG-TT-ATTCTTTGGATACAATTTTTAGATGAAAAT------ATAGGTGTTATA-GCACGATCAAAGTGCAGACATAGACAAGAAGCTTCTTGGACCCCAATC-AGACTASizeHit CountTotal NormTotal
No Reads
dm3
TGTAGATACACCAGATGGTCTCGTAAACGGAGCCACTGG-TGTCCTT----------AGGGAGATTGGATTCAGCACGTCCAGCACTAT---------TGTAT-ATTTTTTGGATACAATTTTAAGATGAAAGT------ATGGGAGTAAATCGCGCGATC-----GTAGACATTGTG----GTCTTCATGGACCCCGATTCGAAAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............AGATGGTCTCGTAAACGGAGC...............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
................................CCACTGG-TGTCCTT----------AGGGAGATT..............................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TCGTAAACGGAGCCACTGG-TG......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................CACTGG-TGTCCTT----------AGGGAGAT...............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
droSim2
TGTATATACATCAGATGGTCTCGTAAACGGAGCCACTGG-TGTCCTT----------GGGTAGATTGGATTCAGCGCGTCCAACACTCC---------AG-AT-CTTCTTTGGATACAATTTTTAGATGATAGT------ATGGGAGTAAAT-GCGCGATCTAAGCGCAGACATTGCAAAGAGGCTTCATGGACCCCAATTTCGAAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
TGTAGATACATCAGATGGTCTCGTAAACGGAGCCACTGG-TGTCCTT----------GGGTAGATTGGATTCAGCGCGTCCAACACTCC---------AG-AT-CTTCTTTGAATACAATTTTTAGATGATAGT------TGGG---------------------------------AAAGAGGCTTCATGGACCCCAATTTCGAAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TGTAGATACATCAGATGGTCTCGTAAACGGAGCCACTGG-TGTCCTT----------AGGGAGATAGGCTTCAGTACATCCAACACTCC---------AG-AT-CTTCTTTGGATACAATTTTTAGATGAAAGC------ATAGGAGTAAAT-GCGCGTTCTAAGCGCAGACATTATGAGGAGGCTTCTTGGACGCCGATTTCGAAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................CTCGTAAACGGAGCCACTGG-TGT.....................................................................................................................................................................23200.20402000020000
...................CTCGTAAACGGAGCCACTGG-TG......................................................................................................................................................................22200.15303000000000
..................................................................GGCTTCAGTACATCCAACACTCC---------AA-...........................................................................................................2590.11101000000000
...................CTCGTAAACGGAGCCACTGG-TGTCC...................................................................................................................................................................25200.10202000000000
TGTAGATACATCAGATGGTCTCGTA.......................................................................................................................................................................................25200.05101000000000
....................TCGTAAACGGAGCCACTGG-TGT.....................................................................................................................................................................22200.05101000000000
.................................................................................................................................AAAGC------ATAGGAGTAAAT-GC.....................................................19200.05100000010000
.................GTCTCGTAAACGGAGCCACTGG-TGT.....................................................................................................................................................................25200.05100000010000
......................................................................................................T-CTTCTTTGGATACAATTTTTAGATG...............................................................................26200.05100100000000
droEre2
TGTAGATACATCAGATGTTCTCGTAAGCGGAGCCATTTG-GAGCTTT----------ATGGAGATAGGCTCCAGTACGTCCAACATGCC---------AG-AT-CTTCTTTGGATACAATTTTTAGATGATA-T------GTGGGAGTAAGT-ACGCGATCTATGTGCAGACATTGTGAGGAGGCTCTTTCGACCCCGATTTCGTAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/15/2015 at 03:06 PM