ID:

dmo_275

 Coordinate:

scaffold_6541:1737325-1737391 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.1 -26.1 -26.1 -26.1

Flybase annnotation

Antisense to intron [Dmoj\GI14224-in]

Repeatable elements

NameClassFamilyStrand
PARISDNATcMar-Tc1-
mature
  1. dmo_323  scaffold_2111:3782-3804 +
  2. scaffold_6473:13846253-13846275 -
  3. scaffold_6482:237911-237933 +
  4. scaffold_6482:400072-400094 +
  5. dmo_275  scaffold_6541:1737326-1737348 -
star
  1. scaffold_6473:13846292-13846318 -
  2. scaffold_6482:237868-237894 +
  3. scaffold_6482:400029-400055 +
  4. scaffold_6498:2604917-2604943 +
  5. dmo_275  scaffold_6541:1737365-1737391 -

Sense Strand Reads

ACCGGAATACTACGACATAAATGAACTAATATTGTCGATGTCGCGACGCCTCAGAGGTGTAATGGAAGCTAATGGTGAACATACCAAATATTAGCCAATTCCATACCGATCTGAGAGAGATACAGATCTCATAATATTAATGTTTGCATTTTGCAAAGAATTAATGG
***********************************...((((.......((((((...((.(((((((((((((((......))))....)))))...))))))))...)))))).........))...))************************************ 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
.............................................................................................GCCAATTCCATACCGATCTGAGA................................................... 23 0 5 6.40 32 25 5 1 1
..................AAATGAACTAATATTGTCGATGTC............................................................................................................................. 24 0 6 2.83 17 11 5 0 1
.............................................................................................GCCAATTCCATACCGATCTGAGAGA................................................. 25 0 5 2.40 12 9 3 0 0
.............................................................................................GCCAATTCCATACCGATCTGAGAG.................................................. 24 0 5 2.00 10 8 0 2 0
.............................................................................................GCCAATTCCATACCGATCTGAGAGAGA............................................... 27 0 5 1.60 8 5 2 1 0
..................AAATGAACTAATATTGTCGATGTCGCG.......................................................................................................................... 27 0 6 1.17 7 7 0 0 0
..................AAATGAACTAATATTGTCGATGTCG............................................................................................................................ 25 0 6 1.17 7 4 2 1 0
..................AAATGAACTAATATTGTCGATGT.............................................................................................................................. 23 0 6 1.00 6 2 3 1 0
.............................................................................................GCCAATTCCATACCGATCTGAGAGAG................................................ 26 0 5 0.60 3 3 0 0 0
.............................................................................................GCCAATTCCATACCGATCTGAG.................................................... 22 0 5 0.60 3 3 0 0 0
........................................................................................................................................TTAATGTTTCCAATTTGCAA........... 20 2 9 0.56 5 3 0 2 0
..................AAATGAACTAATATTGTCGATGTCGCGA......................................................................................................................... 28 0 6 0.50 3 2 0 1 0
...................AATGAACTAATATTGTCGATGTC............................................................................................................................. 23 0 6 0.50 3 3 0 0 0
..................................................TCAGAGGTGTAATGGAAGCTAATGGTG.......................................................................................... 27 0 5 0.40 2 2 0 0 0
..............................................................................................CCAATTCCATACCGATCTGAGAG.................................................. 23 0 5 0.40 2 2 0 0 0
..................................................TCAGAGGTGTAATGGAAGCTAATGG............................................................................................ 25 0 6 0.33 2 0 0 2 0
..................AAATGAACTAATATTGTCGATGTCGC........................................................................................................................... 26 0 6 0.33 2 2 0 0 0
.....................................................................................................................................ATTTTAATGTTTCCAATTTGCA............ 22 3 19 0.32 6 6 0 0 0
..................................................TCGGTGGTGTAATGGTAGC.................................................................................................. 19 3 20 0.25 5 0 0 5 0
.....................................................................................................................................ATTTTAATGTTTCCAATTTGCAA........... 23 3 9 0.22 2 2 0 0 0
............................ATATTGTCGATGTCGCGACGCCT.................................................................................................................... 23 0 9 0.22 2 0 2 0 0
..CGGAATACTACGACATAAATGAACTA........................................................................................................................................... 26 0 5 0.20 1 1 0 0 0
.............................................................................................GCCAATTCCATACCGTTCTGAGA................................................... 23 1 5 0.20 1 0 1 0 0
.............................................................................................GCCAATTACAGACCGATCTGAGAGAGA............................................... 27 2 5 0.20 1 0 1 0 0
.............................................................................................GCCAATTCCATACCGATCTGAGAGAGATA............................................. 29 0 5 0.20 1 1 0 0 0
..............................................................................................CCAATTCCATACCGATCTGAGAGAGA............................................... 26 0 5 0.20 1 1 0 0 0
.....................................................................................................CATACCGATCTGAGAGAGATACA........................................... 23 0 5 0.20 1 1 0 0 0
...............................................................................................CAATTCCATACCGATCTGAGAG.................................................. 22 0 5 0.20 1 1 0 0 0
.............................................................................................GCCAAGTCCATACCGATCTGAGAGA................................................. 25 1 5 0.20 1 0 1 0 0
.............................................................................................GTCAATTCCATACCGATCTGAGAG.................................................. 24 1 5 0.20 1 0 1 0 0
.............................................................................................GCCAATTCCATTCCGATCTGAGAGAG................................................ 26 1 5 0.20 1 1 0 0 0
................................................................................................AATTCCATACCGATCTGAGAGAGA............................................... 24 0 5 0.20 1 1 0 0 0
...................AATGAACTAATATTGTCGATGTCGC........................................................................................................................... 25 0 6 0.17 1 1 0 0 0
...................AATGAACTAATATTGTCGATGT.............................................................................................................................. 22 0 6 0.17 1 1 0 0 0
..................AAAGGAACTAATATTGTCGATG............................................................................................................................... 22 1 6 0.17 1 0 1 0 0
.................CAAATGAACTAATATTGTCGATGTCG............................................................................................................................ 26 1 6 0.17 1 1 0 0 0
..................AAATGAACTCATATTGTCGATGTC............................................................................................................................. 24 1 6 0.17 1 0 0 0 1
..................AAATGAACTAATATTGTCGATGC.............................................................................................................................. 23 1 6 0.17 1 0 1 0 0
...............................TTGTCGATGTCGCGACGCCTCAGAGG.............................................................................................................. 26 0 8 0.13 1 1 0 0 0
..........................TGATATTGTCGATGTCGCGACGCC..................................................................................................................... 24 1 9 0.11 1 0 1 0 0
..........................TAATATTGTCGATGTCGCGACGCC..................................................................................................................... 24 0 9 0.11 1 0 1 0 0
......................................................................................................................................TTTTAATGTTTCCAATTTGCAA........... 22 3 20 0.10 2 0 0 2 0
........................................................................................................................................TTAATGTTTCCAATTTGCA............ 19 2 16 0.06 1 0 0 1 0
.........................................................................................................................................TAATGTTTCCAATTTGCA............ 18 2 20 0.05 1 1 0 0 0
..............................................................................................................................................TTTGGATTTTGCATAGAA....... 18 2 20 0.05 1 1 0 0 0

Anti-sense strand reads

TGGCCTTATGATGCTGTATTTACTTGATTATAACAGCTACAGCGCTGCGGAGTCTCCACATTACCTTCGATTACCACTTGTATGGTTTATAATCGGTTAAGGTATGGCTAGACTCTCTCTATGTCTAGAGTATTATAATTACAAACGTAAAACGTTTCTTAATTACC
************************************...((((.......((((((...((.(((((((((((((((......))))....)))))...))))))))...)))))).........))...))*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V049
head
 V056
head
.GGCCTTATGATGCTGTATTTACTTGAT........................................................................................................................................... 27 0 5 68.40 342 288 18 26 9 0 1
...CCTTATGATGCTGTATTTACTTGAT........................................................................................................................................... 25 0 5 13.80 69 22 25 19 3 0 0
...............................................................................GTATGGTTTATAATCGGTTAAGGT................................................................ 24 0 7 7.86 55 47 7 1 0 0 0
..GCCTTATGATGCTGTATTTACTTGAT........................................................................................................................................... 26 0 5 6.20 31 29 1 0 1 0 0
.GGCCTTATGATGCTGTATTTACTTGA............................................................................................................................................ 26 0 5 4.60 23 23 0 0 0 0 0
..............................................................................TGTATGGTTTATAATCGGTTAAGGT................................................................ 25 0 7 4.00 28 21 7 0 0 0 0
....CTTATGATGCTGTATTTACTTGAT........................................................................................................................................... 24 0 5 3.60 18 10 5 3 0 0 0
..........................................................................................................................GTCTAGAGTATTATAATTACAAACGT................... 26 0 5 3.00 15 14 0 0 1 0 0
.....TTATGATGCTGTATTTACTTGAT........................................................................................................................................... 23 0 5 2.60 13 6 5 1 1 0 0
........................................................................................................................ATGTCTAGAGTATTATAATTACAAACGT................... 28 0 5 2.40 12 8 3 1 0 0 0
.........................................................................................................................TGTCTAGAGTATTATAATTACAAACGT................... 27 0 5 2.20 11 8 2 1 0 0 0
TGGCCTTATGATGCTGTATTTACTTGAT........................................................................................................................................... 28 0 5 1.80 9 5 3 1 0 0 0
CGGCCTTATGATGCTGTATTTACTTGAT........................................................................................................................................... 28 1 5 1.60 8 5 0 3 0 0 0
..............................................GCGGAGTCTCCACATTACCTTCGAT................................................................................................ 25 0 7 1.57 11 11 0 0 0 0 0
...............................................CGGAGTCTCCACATTACCTTCGATT............................................................................................... 25 0 7 1.43 10 9 1 0 0 0 0
..............................................GCGGAGTCTCCACATTACCTTCGATT............................................................................................... 26 0 7 1.43 10 9 0 0 1 0 0
.........................................GCGCTGCGGAGTCTCCACATTACCT..................................................................................................... 25 0 7 1.29 9 7 2 0 0 0 0
...CCTTATGATGCTGTATTTACTTGA............................................................................................................................................ 24 0 5 1.20 6 5 1 0 0 0 0
.............................................................................................CGGTTAAGGTATGGCTAGACTCTCT................................................. 25 0 5 1.20 6 5 1 0 0 0 0
................................................GGAGTCTCCACATTACCTTCGATT............................................................................................... 24 0 8 1.13 9 7 2 0 0 0 0
............................................................TTACCTTCGATTACCACTTGT...................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...............................................................................GTATGGTTTATAATCGGTTAAGG................................................................. 23 0 7 1.00 7 7 0 0 0 0 0
............................................................................CTTGTATGGTTTATAATCGGTTAAGGT................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
.GGCCTTATGATGCTGTATTTACTTGATT.......................................................................................................................................... 28 0 5 0.80 4 4 0 0 0 0 0
.......................................CAGCGCTGCGGAGTCTCCACATTACCT..................................................................................................... 27 0 7 0.71 5 4 1 0 0 0 0
...CCTTATGATGCTGTATTTACTTGGT........................................................................................................................................... 25 1 5 0.60 3 0 3 0 0 0 0
.GGCCTTATGATGCTGTATTTACTTG............................................................................................................................................. 25 0 5 0.60 3 3 0 0 0 0 0
............................................CTGCGGAGTCTCCACATTACCTTCGAT................................................................................................ 27 0 7 0.57 4 4 0 0 0 0 0
..............................................GCGGAGTCTCCACATTACCTTCGATTAC............................................................................................. 28 0 7 0.57 4 4 0 0 0 0 0
.........................................GCGCTGCGGAGTCTCCACATTACCTT.................................................................................................... 26 0 7 0.57 4 4 0 0 0 0 0
.................................................GAGTCTCCACATTACCTTCGATTAC............................................................................................. 25 0 8 0.50 4 4 0 0 0 0 0
...................................................................................GGTTTATAATCGGTTAAGGTATGGCT.......................................................... 26 0 6 0.50 3 3 0 0 0 0 0
.GGCCTTATGATGCTGTATTTACTTT............................................................................................................................................. 25 1 6 0.50 3 1 2 0 0 0 0
..............................................................................CGTATGGTTTATAATCGGTTAAGGT................................................................ 25 1 7 0.43 3 0 3 0 0 0 0
.GGCCTTATGATGCTGTATT................................................................................................................................................... 19 0 7 0.43 3 3 0 0 0 0 0
.................................................................................ATGGTTTATAATCGGTTAAGGT................................................................ 22 0 7 0.43 3 2 1 0 0 0 0
...............................................................................GTATGGTTTATAATCGGTTAACGT................................................................ 24 1 7 0.43 3 0 3 0 0 0 0
.........................................................................................................................TGTCTAGAGTATTATAATTACAAACG.................... 26 0 5 0.40 2 2 0 0 0 0 0
.....TTATGATGCTGTATTTACTTGATT.......................................................................................................................................... 24 0 5 0.40 2 0 2 0 0 0 0
.GGCCTTATGATGCTGTATTTACTTGATC.......................................................................................................................................... 28 1 5 0.40 2 2 0 0 0 0 0
................................................GGAGTCTCCACATTACCTTCGATTACCA........................................................................................... 28 0 5 0.40 2 1 1 0 0 0 0
.............................................................................................CGGTTAAGGTATGGCTAGACTCTCTCT............................................... 27 0 5 0.40 2 2 0 0 0 0 0
.CGCCTTATGATGCTGTATTTACTTGAT........................................................................................................................................... 27 1 5 0.40 2 2 0 0 0 0 0
.GGCCTTATGATGCTGTATTTACT............................................................................................................................................... 23 0 6 0.33 2 2 0 0 0 0 0
...............................................CGGAGTCTCCACATTACCTTCGAT................................................................................................ 24 0 7 0.29 2 2 0 0 0 0 0
..............................................................................TGTATGGTTTATAATCGGTTAAGTT................................................................ 25 1 7 0.29 2 0 2 0 0 0 0
................................................................................TATGGTTTATAATCGGTTAAGGT................................................................ 23 0 7 0.29 2 2 0 0 0 0 0
...............................................................................GTATGGTTTATAATCGGTTAAGTT................................................................ 24 1 7 0.29 2 0 2 0 0 0 0
..........................................CGCTGCGGAGTCTCCACATTACCT..................................................................................................... 24 0 7 0.29 2 2 0 0 0 0 0
.GGCCTTATGATGCTGTAT.................................................................................................................................................... 18 0 7 0.29 2 2 0 0 0 0 0
......................................ACAGCGCTGCGGAGTCTCCACATTACCT..................................................................................................... 28 0 7 0.29 2 2 0 0 0 0 0
...............................................CGGAGTCTCCACATTACCTTCGATTAC............................................................................................. 27 0 7 0.29 2 1 1 0 0 0 0
.........................................................................................................GGCTAGACTCTCTCTATGTCT......................................... 21 0 4 0.25 1 1 0 0 0 0 0
................................................GGAGTCTCCACATTACCTTCGAT................................................................................................ 23 0 8 0.25 2 1 1 0 0 0 0
.................................................GAGTCTCCACATTACCTTCGATT............................................................................................... 23 0 8 0.25 2 2 0 0 0 0 0
.GGCCTTATGATGCTGTATTTACCTGAT........................................................................................................................................... 27 1 5 0.20 1 0 0 1 0 0 0
.............................................................................................CGGTTAAGGTATGGCTAGACTCTTTCT............................................... 27 1 5 0.20 1 0 1 0 0 0 0
.................................................................................................TAAGGTATGGCTAGACTCTCTCAAT............................................. 25 1 5 0.20 1 0 0 1 0 0 0
.AGCCTTATGATGCTGTATTTACTTGAT........................................................................................................................................... 27 1 5 0.20 1 1 0 0 0 0 0
.GGCCTTATGAGGCTGTATTTACTTGAT........................................................................................................................................... 27 1 5 0.20 1 1 0 0 0 0 0
...................................................GTCTCCCCATTACCTTCGATTCCCA........................................................................................... 25 2 5 0.20 1 0 0 0 1 0 0
............GCTGTATTTACTTGATTATAACAGCT................................................................................................................................. 26 0 5 0.20 1 1 0 0 0 0 0
.........................................................................................................................TGTCTAGAGTATTATAATTGC......................... 21 1 5 0.20 1 0 1 0 0 0 0
............................................................................................TCGGTTAAGGTATGGCTAGACTCTCTCT............................................... 28 0 5 0.20 1 0 1 0 0 0 0
...CCTTATGATGCTGTATTTACTTGATTG......................................................................................................................................... 27 1 5 0.20 1 1 0 0 0 0 0
...CCTTATGACGCTGTATTTACTTGAT........................................................................................................................................... 25 1 5 0.20 1 0 0 0 1 0 0
.............................................................................................CGGTTAAGGTATGGCTAGACTCTCTC................................................ 26 0 5 0.20 1 1 0 0 0 0 0
CGGCCTTATGATGCTGTATTTACTTGATT.......................................................................................................................................... 29 1 5 0.20 1 1 0 0 0 0 0
..........................................................................................................................GTCTAGAGTATTATAATTACAAACG.................... 25 0 5 0.20 1 1 0 0 0 0 0
ATGCCTTATGATGCTGTATTTACTTGAT........................................................................................................................................... 28 2 5 0.20 1 0 0 1 0 0 0
.GGCCTTATGATGCTGTATTTACTTGAA........................................................................................................................................... 27 1 5 0.20 1 0 1 0 0 0 0
........TGATGCTGTATTTACTTGA............................................................................................................................................ 19 0 5 0.20 1 1 0 0 0 0 0
.........................................................................................................................CGTCTAGAGTATTATAATTACAAACGT................... 27 1 5 0.20 1 0 1 0 0 0 0
...CCTTATGATGCTTTATTTACTTGAT........................................................................................................................................... 25 1 5 0.20 1 0 0 1 0 0 0
.......ATGATGCTGTATTTACTTGAT........................................................................................................................................... 21 0 5 0.20 1 1 0 0 0 0 0
.......ATGATGCTGTATTTACTTGATT.......................................................................................................................................... 22 0 5 0.20 1 0 1 0 0 0 0
...............................................CGGAGTCTCCACATTACATTCGATTACCA........................................................................................... 29 1 5 0.20 1 1 0 0 0 0 0
.GGCCTTATGATGCTGTCTTTACTTGAT........................................................................................................................................... 27 1 5 0.20 1 0 1 0 0 0 0
........TGATGCTGTATTTACTTGAT........................................................................................................................................... 20 0 5 0.20 1 1 0 0 0 0 0
.............................................................................................................AGACTCTCTCTATGTCTAGAGTATTAT............................... 27 0 5 0.20 1 1 0 0 0 0 0
.....CTATGATGCTGTATTTACTGGAT........................................................................................................................................... 23 2 5 0.20 1 0 1 0 0 0 0
.............................................................................................CGGTTAAGGTATGGCTAGACTCTCTGT............................................... 27 1 5 0.20 1 0 1 0 0 0 0
.........................................................................................................................TGTCTAGAGTATTATAATTACAAACTT................... 27 1 5 0.20 1 0 1 0 0 0 0
.............................................................................................CGGTTAAGGTATGGCTAGACTCTCTCTAT............................................. 29 0 5 0.20 1 1 0 0 0 0 0
..............................................................................................GGTTAAGGTATGGCTAGACTCTCT................................................. 24 0 5 0.20 1 1 0 0 0 0 0
.GGCCTTATGATGCTGAATTTACTTGAT........................................................................................................................................... 27 1 5 0.20 1 1 0 0 0 0 0
.................................................GAGTCTCCACATTACCTTCGATTACCA........................................................................................... 27 0 5 0.20 1 1 0 0 0 0 0
......TATGATGCTGTATTTACTTGAT........................................................................................................................................... 22 0 5 0.20 1 0 0 1 0 0 0
.TTCCTTATGATGCTGTATTTACTTGAT........................................................................................................................................... 27 2 5 0.20 1 0 0 0 0 1 0
..................................................................................................AAGGTATGGCTAGACTCTCTCTATGT........................................... 26 0 5 0.20 1 0 0 1 0 0 0
...TCTTATGATGCTGTATTTACTTGAT........................................................................................................................................... 25 1 5 0.20 1 0 1 0 0 0 0
...........................................................................................................................TCTAGAGTATTATAATTACAAACG.................... 24 0 5 0.20 1 1 0 0 0 0 0
CCGCCTTATGATGCTGTATTTACTTGAT........................................................................................................................................... 28 2 5 0.20 1 1 0 0 0 0 0
.GGCCTTATGATGCTGCATTTACTTGAT........................................................................................................................................... 27 1 5 0.20 1 1 0 0 0 0 0
.GGCCTTATGATGCTGTTTTTACTTGAT........................................................................................................................................... 27 1 5 0.20 1 1 0 0 0 0 0
..................................................................................................AAGGTATGGCTAGACTCTCTC................................................ 21 0 5 0.20 1 1 0 0 0 0 0
.............................................................................................CGCGTAAGGTATGGCTTGACTCTCT................................................. 25 3 5 0.20 1 0 0 0 1 0 0
.GGCCTTATGATGCTGTATTTACTTGAC........................................................................................................................................... 27 1 5 0.20 1 1 0 0 0 0 0
.GTCCTTATGATGCTGTATTTACTTGAT........................................................................................................................................... 27 1 5 0.20 1 0 0 0 1 0 0
.GGCCTTATGATGCTGTATCTACTTGAT........................................................................................................................................... 27 1 5 0.20 1 1 0 0 0 0 0
....CTTATGCTGCTGTATTTACTTGAT........................................................................................................................................... 24 1 5 0.20 1 0 0 0 1 0 0
.GGCCTTATGATGCTGTATTTACTTGTT........................................................................................................................................... 27 1 5 0.20 1 0 1 0 0 0 0
.....................................................CTCCACATTACCTTCGATTATCAC.......................................................................................... 24 1 5 0.20 1 0 1 0 0 0 0
.............................................................................................CGTTTAAGGTATGGCTAGACTCTCTCT............................................... 27 1 5 0.20 1 0 1 0 0 0 0
..GCCTTATGATGCTGGATTTACTTGAT........................................................................................................................................... 26 1 5 0.20 1 1 0 0 0 0 0
..GCCTTATGATGCTGTATTTACTTG............................................................................................................................................. 24 0 5 0.20 1 1 0 0 0 0 0
..GCCTTATGATGCTGTATTTACTTGA............................................................................................................................................ 25 0 5 0.20 1 1 0 0 0 0 0
................................................GGAGTCTCCACATTACCTTCGATTACCTA.......................................................................................... 29 2 6 0.17 1 1 0 0 0 0 0
...CCTTATGATGCTGTATTTACT............................................................................................................................................... 21 0 6 0.17 1 1 0 0 0 0 0
....................TACTTGATTATAACAGCTACAGCGCT......................................................................................................................... 26 0 6 0.17 1 0 1 0 0 0 0
...CCTTATGATGCTGTATTTAC................................................................................................................................................ 20 0 6 0.17 1 0 1 0 0 0 0
............................................................................................TCGGTTAAGGTATGGCTAGACT..................................................... 22 0 6 0.17 1 1 0 0 0 0 0
.GGCCTTATGATGCTGTATTTAC................................................................................................................................................ 22 0 6 0.17 1 1 0 0 0 0 0
.................................................................................ATGGTTTATAATCGGTTAAGGTATGGC........................................................... 27 0 6 0.17 1 1 0 0 0 0 0
...CCTTATGATGCTGTATTTACTTTAT........................................................................................................................................... 25 1 6 0.17 1 0 1 0 0 0 0
...............GTATTTACTTGATTATAACAGCTA................................................................................................................................ 24 0 6 0.17 1 1 0 0 0 0 0
.GGCCTTATGATGCTGTATTTGC................................................................................................................................................ 22 1 6 0.17 1 0 1 0 0 0 0
............................................CTGCGGAGTCTCCACATTACCTTCGATT............................................................................................... 28 0 7 0.14 1 1 0 0 0 0 0
..............................................................................CGTATGGTTTATAATCGGTTAAGGC................................................................ 25 2 7 0.14 1 0 1 0 0 0 0
....................................CTACAGCGCTGCAGAGTCTCCTCAC.......................................................................................................... 25 3 7 0.14 1 0 1 0 0 0 0
..............................................GCGGAGTCTCCACATTACCT..................................................................................................... 20 0 7 0.14 1 1 0 0 0 0 0
.................................................................................ATGGTTTATAATCGGTTAAGGTAT.............................................................. 24 0 7 0.14 1 1 0 0 0 0 0
..............................................................................CGTATGGTTTATAATCGGTTAAGGTCT.............................................................. 27 2 7 0.14 1 0 1 0 0 0 0
.............................................TGCGGAGTCTCCACATTACCTTCGATAGC............................................................................................. 29 2 7 0.14 1 1 0 0 0 0 0
...............................................................................GTATGGTCTATAATCGGTTAAGGT................................................................ 24 1 7 0.14 1 0 0 0 1 0 0
TGGCCTTATGATGCTGTATTT.................................................................................................................................................. 21 0 7 0.14 1 1 0 0 0 0 0
...............................................CGGAGTCTCCACATTACCTTCGATTC.............................................................................................. 26 1 7 0.14 1 0 1 0 0 0 0
...........................................GCTGCGGAGTCTCCACATTACCTTCGATT............................................................................................... 29 0 7 0.14 1 1 0 0 0 0 0
...............................................................................GTATGGTTTATAATCGGTTAAGGTC............................................................... 25 1 7 0.14 1 0 1 0 0 0 0
...............................................CGGAGTCTCCACATTACCT..................................................................................................... 19 0 7 0.14 1 1 0 0 0 0 0
...............................................CGGAGTCTCCACATTACCTTC................................................................................................... 21 0 7 0.14 1 1 0 0 0 0 0
.......................................CAGCGCTGCAGAGTCTCCTCAT.......................................................................................................... 22 2 7 0.14 1 0 1 0 0 0 0
..............................................................................TGTATGGTTTATAGTCGGTTAAGGT................................................................ 25 1 7 0.14 1 1 0 0 0 0 0
.............................................TGCGGAGTCTCCACATTACCTTCGATT............................................................................................... 27 0 7 0.14 1 0 1 0 0 0 0
...............................................CGGAGTCTCCACATTACCTTCGATCAC............................................................................................. 27 1 7 0.14 1 0 1 0 0 0 0
............................................CTGCGGAGTCTCCACATTACC...................................................................................................... 21 0 7 0.14 1 1 0 0 0 0 0
....................................CTACAGCGCTGCGGAGTCTCCACAT.......................................................................................................... 25 0 7 0.14 1 1 0 0 0 0 0
..............................................................................TGTATGGTTTATAATCGGT...................................................................... 19 0 7 0.14 1 0 1 0 0 0 0
...............................................................................GTATGGTTTATAATCGGTTAAGGTCA.............................................................. 26 2 7 0.14 1 1 0 0 0 0 0
............................................CTGCGGAGTCTCCACATTACCTTCGA................................................................................................. 26 0 7 0.14 1 1 0 0 0 0 0
..............................................................................TGTATGGTTTATACTCGGTTAAGGT................................................................ 25 1 7 0.14 1 1 0 0 0 0 0
...................................................................................GGTTTATAATCGGTTAAGGT................................................................ 20 0 7 0.14 1 1 0 0 0 0 0
...........................................GCTGCGGAGTCTCCACATTACCT..................................................................................................... 23 0 7 0.14 1 1 0 0 0 0 0
.GGCCTTATGATGCTGTATTTA................................................................................................................................................. 21 0 7 0.14 1 1 0 0 0 0 0
.............................................TGCGGAGTCTCCACATTACCTTCGAT................................................................................................ 26 0 7 0.14 1 1 0 0 0 0 0
......................................ACAGCGCTGCGGAGTCTCCACATTACCTC.................................................................................................... 29 1 7 0.14 1 0 1 0 0 0 0
...................................GCTACAGCGCTGCAGAGTCTCCTCAT.......................................................................................................... 26 2 7 0.14 1 0 0 0 1 0 0
...........................................GCTGCGGAGTCTCCACATTACCTT.................................................................................................... 24 0 7 0.14 1 1 0 0 0 0 0
........................................AGCGCTGCGGAGTCTCCACATTACC...................................................................................................... 25 0 7 0.14 1 1 0 0 0 0 0
..............................................GCGGAGTCTCCACATTACCTTGGATT............................................................................................... 26 1 7 0.14 1 1 0 0 0 0 0
...............................................................................GTATGGTTTATAATCGGTTAAGGTAT.............................................................. 26 0 7 0.14 1 1 0 0 0 0 0
..............................................................................CGTATGGTTTATAATCGGTTATGGT................................................................ 25 2 7 0.14 1 0 1 0 0 0 0
.....................................TACAGCGCTGCGGAGTCACCACATTACCT..................................................................................................... 29 1 7 0.14 1 1 0 0 0 0 0
......................................ACAGCGCTGCGGAGTCTCCACATTACC...................................................................................................... 27 0 7 0.14 1 1 0 0 0 0 0
........................................AGCGCTGCGGAGTCTCCACATTACCT..................................................................................................... 26 0 7 0.14 1 1 0 0 0 0 0
.................................................................................ATGGTTTATAATCGGTTAAGTG................................................................ 22 2 8 0.13 1 0 1 0 0 0 0
................................................GGAGTCTCCACATTACCTTCGATTAC............................................................................................. 26 0 8 0.13 1 1 0 0 0 0 0
............................TATAACAGCTACAGCGCTGCGGAGT.................................................................................................................. 25 0 9 0.11 1 1 0 0 0 0 0
...CCTTATGATGCTGTATGTA................................................................................................................................................. 19 1 9 0.11 1 0 1 0 0 0 0
............................TATAGTAGCTACAGCGCTGCAGAGTCT................................................................................................................ 27 3 9 0.11 1 0 1 0 0 0 0
........................................................................................................................................AATTACAAAGGTTAAACGTT........... 20 2 9 0.11 1 0 0 1 0 0 0
.....................................................................................................................................TAAAATTACAAAGGTTAAACGT............ 22 3 19 0.05 1 0 0 1 0 0 0
.......................................................................................................................................AAATTACAAAGGTTAAACGTT........... 21 3 20 0.05 1 0 0 1 0 0 0
.......................................................................................TATGAGCGGTTAGGGTATG............................................................. 19 3 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6541:1737275-1737441 - dmo_275 ACCGG------AA------------------TACTACGACATAAATGAACTAATATTGTCGATGTCGCGACGCCTCAGAGGTGTAATGGAAGCTAATGGTGAACATACCAAATATT-----------------------------------AGCCAATTCC-ATACCGATCTGAGAG--------A--G-ATACAGAT--------C-TCATAATAT--TAAT-GTTTGCATTTTGCAAAGAA-TTAATGG
droVir3 scaffold_13036:1072402-1072568 - ACCCG------AA------------------ATCTATGACCTGAAA-ACCTTATTCACTCAATGTCACGTCGTCTGCGGGCTGTAATGGATGCTAATGGCCAATATACCAAATATT-----------------------------------AGTACCACCAT-AGCTATAGTTTCCT--------A--G-ATTTAGTT--------A-TGTATATAG--TAATATTTTGCATTTTGCAAAGAA-TTAATTG
droGri2 scaffold_15110:24404811-24404899 + TCCAG------AA----------------------ACGACCCGGA--AGCTGGTATCTTCCATGAACAATAGGTTAAGGGGAGTTATTAAGGCTAAAGGATATCATACTAAGTATT-----------------------------------AAC-------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004514:1388580-1388745 + ACCGG------AA------------------TACTACGACATGAATGCCCTTATATCCTCGATGTCGCGACGTCTCAGAGGAGTAGTGGATGCTAATGGAGGGCATACAAAATATT-----------------------------------AGCCAAATATTAGCTTCATCTTCGAG--------A--A---ATTTTC--------T-TGTATAATG--TAAT-GTTTGCATTTTGCAAACAA-TTAATAG
dp5 XL_group1a:1220803-1220967 - ACCCG------AA------------------TATTACGACATAAATGTTCTAATATCATCGATGTCGCGACGTCTCAGAGGAGTATTGGATGCTAATGGAGGGCATACA--ATATT-----------------------------------AGCCAAATAG-AGCTGGATCCTTTAA--------A--G-ATATACAT--------T-TTTTAAAAT--TACT-GTTTGCATTTTGCAAAGAT-TTAATAG
droPer2 scaffold_867:1719-1885 + ACCCG------AA------------------TATTACGACATAAATGTCCTAATATCATCGATGTCGCGACGTCTCAGAGGAGTATTGGATGCTAATGGAGGACACACAAAATATT-----------------------------------AGCCAAATAG-AGCTGCATCCTTTAA--------A--G-ATATACAT--------T-TTTTAAAAT--TACT-GTTTGCATTTTGCAAAGAT-TTAATAG
droAna3 scaffold_13045:352281-352438 + ACCTA------AT------------------AATTATGACCTAAAGGACCTTATTCATTCCATGCCTCGACGCCTGAATGCTGCATTAGATGCTAAGGGACAACACACCAAATATT-----------------------------------AGAATAATTAA-GGCTATAGTTTTTA--------A--G-TTTTCGTG--------A------------TCAT-GTGTTCATTTTGCAAAGAA-TTACTTG
droBip1 scf7180000395153:18649-18807 + TCCAG------AA------------------TATTACGACCTAAAACAACTTATTTATTCTATGCCTCGTCGCCTGAATGATGTCCTAGATGCCAAAGGACACCACACCAAGTATT-----------------------------------AGTAC----------TATAGTTTATA--------A--G-TTTTCATT--------AC-AAATGTAA-ACAAT-CTTTTAATTTTGCAAAGAA-TTAATTG
droKik1 scf7180000298533:6281-6447 - ACCTC------AG------------------TATTATGACCTAAAAGGTCTTATAAATTCGATGTCGCGACGTCTCCATGCTGTTATGGATGCAAAAGGACTCCATACCAAATATT-----------------------------------AACCAAATTT-GTTAAATAGTTTTTA--------A--G-TTATAGGT--------A-TAATACACG--AAGT-GCTCGAAAATTTCAAACAA-TTAATTG
droFic1 scf7180000454161:30484-30638 - GGCGC------TA----------------------ACGAGACATCCAAATTGGTGAACAGCATGGGTCGACGTTTACAAGCTGTAATAGATGCTAAGGGAGGACCCACAAAATATT-----------------------------------AAAAAAAATTT-CACTGA----------------AAAA---ATGATG--------T-TTTTATATC--GATT-TTCTGAAGTCTACGAATAA-TTTTTGT
droEle1 scf7180000487466:89256-89423 + ACCGG------AA------------------TACTATGACCTAAATGTCCTTATACAGTCTATGTCTCGTCGCCTAAATGCAGTATTAGATGCCAAAGGACACCACACAAAATATT-----------------------------------AGAACATACAT-CGTTACATTTTTTA--------A--G-TTTTGGTT--------AC-GAATCTAA-CAAAT-GTTTGCATTTTGCAAAGAA-TTAATTG
droRho1 scf7180000779273:87144-87310 - ACCTG------AT------------------TATTACGATGTAAACAAATTAATTTCGTCGATGCCCCGTCGCCTCAGAGCAGTAGTGGAGGCTAATGGCGGGCATGGTAAATATT-----------------------------------AGCCAATTAT-ATCTCATTATAACAA--------A--G-ATATAGTC--------T-TTTAAAAAC--AAAT-GTTTGG-CTTTGCAAATAATTTAATAA
droBia1 scf7180000301812:15492-15635 + ACCGA------AA------------------A-C---------------TTGGTCAAAAGCATGAATCGACGCTTACAAGCTGTTATAGATGCTAAGAGAGGACCCACCAAGTACT-----------------------------------AAGACCACCTA-A-CAAA----------------AACTA---ATATGTTTTTCTTCG-GCAT--------AT-CAATGAAGTGTTCGAATAA-TTTTTGT
droTak1 scf7180000415372:3461-3625 + ACCTG------AA------------------TACTACGACTTAACTGGGCTTATACATTCCATGCCTCGACGCCTTAATGCAGCTTTGGAATCTCAGGGCCACCATACCAAATATT-----------------------------------AAGTCGGTATC-TTTTGTAGTTTTTA--------A--G-TTAGTGGT--------AT-AAA--TTC--AACT-GTTTGCATTTTGCAAACAA-TTAATTG
droEug1 scf7180000409471:1486518-1486689 - TCCGT------TG------------------GAATATGACCTACAAAAACTGGTCAGTTCTATGAAAAATCGCATTAAGCTCGTAGTTGAAGCTAAGGGGTGTCATACTAAATATTAAAATTAGTTTAAGATAGTATAAGTTGATAAATAT------------AT----------------------------TCATT--------A--AA---CTGTAGTTT-AAGTACTTTGTGTAAACAC-TTTCTTG
dm3 chrUextra:1309-1477 - CCCAC------AA------------------CAATATGATCTTAAA-AAGTTATTTTTTCAATGAAAAAACGAATACAAAGTGTTATTAATGCTAACGGTATGCATACAAAGTATTATAATTACCTCAT--TATTATAATTTGTTATAAAC------------TA----------------------------TTAGT--------CT-AAG--AAA--GCAT-AAGTAGTTTGTGCAAACAA-TTTCTCG
droSim2 2l:20877895-20878046 + CGCGC------TT------------------GAATATGACCTCCAAAAACTTATCCATTCGATGAAAAAAAGGATTCAACTTGTAGCCAAAGCCAATGGGGGTGATACTATATACT-----------------------------------AAAACTTTTAA-AATTTTAATAAAATAATTTAAAAATTT---AGGA-------------------T--TAAA-CTTTGGAATTTGA--------------
droSec2 scaffold_4810:1873-2045 - CCCGC------TT------------------GAATATGACCTCCTAAAACTTATCCATTCGATGAAAAAAAGGCTTCGACTTGTAGCCAAAGCCAATGGGGGTCATACTAAATACT-----------------------------------AAAACTTTTAA-AATTTTAATAAAATAATCTAAAAATTA---AGGAT--------TA-AAC--TTA--GGTT-TAGTGTTTTGTGTAAAGAG-TTTCTTG
droYak3 v2_chrUn_6882:7909-8041 + TTCTC------GA------------------GAACATTGCCAAAA---TTTGTTGAAATCAATGCCAAAACGTATTAAATGTGTAATACAGGCCAAAGGTGACGTTACACAATTTT-----------------------------------AATTTATATT-AATTTGTTAT---------------------------------------ATTAG------------GCAGCGTT---CGAA-TTAATAG
droEre2 scaffold_4690:18589593-18589766 - AGTTAAGTCAGAGTGGTATGCCATTAACCCCGAA-ATTTGCG--CCAATTTAGTGAATTCAATGCCCCGTCCATGCTCAGCAGTTATAAAAAATAAAGGAAATACCACTAAATATT-----------------------------------AATATTACAAC-TGTTTTTATAAGAATTCATAAAAATTA---AGTT-------------------------T----TTCTTAGTTTTAAGAG-TT-----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ACCGG------AA------------------TACTACGACATAAATGAACTAATATTGTCGATGTCGCGACGCCTCAGAGGTGTAATGGAAGCTAATGGTGAACATACCAAATATT-----------------------------------AGCCAATTCC-ATACCGATCTGAGAG--------A--G-ATACAGAT--------C-TCATAATAT--TAAT-GTTTGCATTTTGCAAAGAA-TTAATGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................GCCAATTCC-ATACCGATCTGAGA...........................................................................2356.40322510051
..........................................AAATGAACTAATATTGTCGATGTC.........................................................................................................................................................................................2462.83171110050
........................................................................................................................................................GCCAATTCC-ATACCGATCTGAGAG--------A--...............................................................2552.4012900030
........................................................................................................................................................GCCAATTCC-ATACCGATCTGAGAG--------..................................................................2452.0010800002
........................................................................................................................................................GCCAATTCC-ATACCGATCTGAGAG--------A--G-A............................................................2751.608500021
..........................................AAATGAACTAATATTGTCGATGTCGCG......................................................................................................................................................................................2761.177700000
..........................................AAATGAACTAATATTGTCGATGTCG........................................................................................................................................................................................2561.177400021
..........................................AAATGAACTAATATTGTCGATGT..........................................................................................................................................................................................2361.006200031
........................................................................................................................................................GCCAATTCC-ATACCGATCTGAGAG--------A--G-.............................................................2650.603300000
........................................................................................................................................................GCCAATTCC-ATACCGATCTGAG............................................................................2250.603300000
..........................................AAATGAACTAATATTGTCGATGTCGCGA.....................................................................................................................................................................................2860.503200001
...........................................AATGAACTAATATTGTCGATGTC.........................................................................................................................................................................................2360.503300000
..........................................................................TCAGAGGTGTAATGGAAGCTAATGGTG......................................................................................................................................................2750.402200000
.........................................................................................................................................................CCAATTCC-ATACCGATCTGAGAG--------..................................................................2350.402200000
..........................................................................TCAGAGGTGTAATGGAAGCTAATGG........................................................................................................................................................2560.332000002
..........................................AAATGAACTAATATTGTCGATGTCGC.......................................................................................................................................................................................2660.332200000
....................................................ATATTGTCGATGTCGCGACGCCT................................................................................................................................................................................2390.222000020
..CGG------AA------------------TACTACGACATAAATGAACTA.......................................................................................................................................................................................................2650.201100000
........................................................................................................................................................GCCAATTCC-ATACCGATCTGAGAG--------A--G-ATA..........................................................2950.201100000
.........................................................................................................................................................CCAATTCC-ATACCGATCTGAGAG--------A--G-A............................................................2650.201100000
................................................................................................................................................................C-ATACCGATCTGAGAG--------A--G-ATACA........................................................2350.201100000
..........................................................................................................................................................CAATTCC-ATACCGATCTGAGAG--------..................................................................2250.201100000
...........................................................................................................................................................AATTCC-ATACCGATCTGAGAG--------A--G-A............................................................2450.201100000
...........................................AATGAACTAATATTGTCGATGTCGC.......................................................................................................................................................................................2560.171100000
...........................................AATGAACTAATATTGTCGATGT..........................................................................................................................................................................................2260.171100000
..........................................AAATGAACTAATATTGTCGATGC..........................................................................................................................................................................................2360.171000010
.......................................................TTGTCGATGTCGCGACGCCTCAGAGG..........................................................................................................................................................................2680.131100000
..................................................TAATATTGTCGATGTCGCGACGCC.................................................................................................................................................................................2490.111000010
droVir3
ACCCG------AA------------------ATCTATGACCTGAAA-ACCTTATTCACTCAATGTCACGTCGTCTGCGGGCTGTAATGGATGCTAATGGCCAATATACCAAATATT-----------------------------------AGTACCACCAT-AGCTATAGTTTCCT--------A--G-ATTTAGTT--------A-TGTATATAG--TAATATTTTGCATTTTGCAAAGAA-TTAATTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................CTGTAATGGATGCTAATGGCCA.....................................................................................................................................................2264.00240000221000000000000000000000100003000012300000000000000000000000
................................................................................CTGTAATGGATGCTAATGGCCAA....................................................................................................................................................2363.6722000071200000000000000000000000000000008400000000000000000000000
................................................................................CTGTAATGGATGCTAATGGC.......................................................................................................................................................2063.6722000061300000030000000000000000000100005300000000000000000000000
................................................................................CTGTAATGGATGCTAATGGCC......................................................................................................................................................2162.1713000061200000000000000000000000000000003100000000000000000000000
................................................................................CTGTAATGGATGCTAATG.........................................................................................................................................................1861.338000000100000000000000000000000000200004100000000000000000000000
...............................................ACCTTATTCACTCAATGTCACGTCG...................................................................................................................................................................................2551.206001000000000000000000001001100000000100000000000000000000000010
................................................................................CTGTAATGGATGCTAATGG........................................................................................................................................................1961.006000010100000000000000000000000000200000200000000000000000000000
...............................................ACCTTATTCACTCAATGTCACGTCGTC.................................................................................................................................................................................2741.004101000000000000000000000000000110000000000000000000000000000000
...............................................ACCTTATTCACTCAATGTCACGTC....................................................................................................................................................................................2451.005000000000000000000000001002200000000000000000000000000000000000
................................................................................CTGTAATGGATGCTAATGGCCAATA..................................................................................................................................................2560.835000000000001000000000000000000000000003100000000000000000000000
................................................................................CTGTAATGGATGCTAATGGCCAATATA................................................................................................................................................2750.603000030000000000000000000000000000000000000000000000000000000000
................................................................................CTGTAATGGATGCTAATGGCCAAT...................................................................................................................................................2460.503001001000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................TAGTTTCCT--------A--G-ATTTAGTT--------A-TGTATCC....................................2750.402000000000000000000000000020000000000000000000000000000000000000
......................................................................................................ATATACCAAATATT-----------------------------------AGTACCACCA..........................................................................................2450.402002000000000000000000000000000000000000000000000000000000000000
................................................................................CTGTAATGGATGCTAATGGCCC.....................................................................................................................................................2260.332000000000000000000000000000000000000001100000000000000000000000
...................................................TATTCACTCAATGTCACGTCGTC.................................................................................................................................................................................2340.251000000100000000000000000000000000000000000000000000000000000000
................................................CCTTATTCACTCAATGTCACGTCGTC.................................................................................................................................................................................2640.251001000000000000000000000000000000000000000000000000000000000000
...................................................TATTCACTCAATGTCACGTCGTCT................................................................................................................................................................................2440.251000000000000000000000000000100000000000000000000000000000000000
...................................................................................TAATGGATGCTAATGGCCAATATACC..............................................................................................................................................2640.251000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TAGTTTCCT--------A--G-ATTTAGTT--------A-TGTAT......................................2540.251000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................TAGTTTCCT--------A--G-ATTTAGTT--------A-TGTATAT....................................2740.251000000000000000000000000000010000000000000000000000000000000000
...................................................TATTCACTCAATGTCACGTCGTCTGC..............................................................................................................................................................................2640.251000000000000000000000000000000100000000000000000000000000000000
....................................................................................................CAATATACCAAATATT-----------------------------------AGTACCACCA..........................................................................................2650.201001000000000000000000000000000000000000000000000000000000000000
...............................................ACCTTATTCACTCAATGTCACG......................................................................................................................................................................................2250.201000000000000000000000000000000010000000000000000000000000000000
...............................................ACCTTATTCACTCAATGTCAC.......................................................................................................................................................................................2150.201000000000000000000000000000000010000000000000000000000000000000
....................................................................................................CAATATACCAAATATT-----------------------------------AGTACCACCAT-........................................................................................2750.201001000000000000000000000000000000000000000000000000000000000000
....................................................ATTCACTCAATGTCACGTCGTCTG...............................................................................................................................................................................2450.201000000000000000000000000000000100000000000000000000000000000000
...................................................................................TAATGGATGCTAATGGCCAATATAC...............................................................................................................................................2550.201000000000000000000000000000001000000000000000000000000000000000
......................................................TCACTCAATGTCACGTCGTCTGC..............................................................................................................................................................................2350.201000000000000000000000000000000010000000000000000000000000000000
......................................................TCACTCAATGTCACGTCGTCTGCGGGC..........................................................................................................................................................................2750.201001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................AATATACCAAATATT-----------------------------------AGTACCACCA..........................................................................................2550.201000000000000000000000000000000000000100000000000000000000000000
....................................................................................................CAATATACCAAATATT-----------------------------------AGTACCACC...........................................................................................2550.201000000000000000000000000001000000000000000000000000000000000000
...............................................ACCTTATTCACTCAATGTCACGT.....................................................................................................................................................................................2350.201000000000000000000000001000000000000000000000000000000000000000
......................................................TCACTCAATGTCACGTCGTCTGCGG............................................................................................................................................................................2550.201000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................AATATACCAAATATT-----------------------------------AGTACCAC............................................................................................2360.171000000000000000000000000100000000000000000000000000000000000000
...................................................................................TAATGGATGCTAATGGCCAATA..................................................................................................................................................2260.171000000000000000000000000000000010000000000000000000000000000000
................................................................................CTGTAATGGATGCTAATGGCCAATCA.................................................................................................................................................2660.171000000000000000000000000000000000000001000000000000000000000000
................................................................................CTGTAATGGATGCTAATGGCCAATCC.................................................................................................................................................2660.171000000000000000000000000000000000000000100000000000000000000000
................................................................................CTGTAATGGATGCTAATGGCCAT....................................................................................................................................................2360.171000010000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................GTATATAG--TAATATTTTGCATTTTGC..............2670.141001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................TAATATTTTGCATTTTGCAAAGA.........2380.131000000000000000000000000000000100000000000000000000000000000000
....G------AA------------------ATCTATGACCTGA...............................................................................................................................................................................................................1690.111000000000000000000000000000000000000000010000000000000000000000
ACCCG------AA------------------ATCTATGACCTGA...............................................................................................................................................................................................................2090.111000000000000000000000000000000000000000100000000000000000000000
droGri2
TCCAG------AA----------------------ACGACCCGGA--AGCTGGTATCTTCCATGAACAATAGGTTAAGGGGAGTTATTAAGGCTAAAGGATATCATACTAAGTATT-----------------------------------AAC-------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ACCGG------AA------------------TACTACGACATGAATGCCCTTATATCCTCGATGTCGCGACGTCTCAGAGGAGTAGTGGATGCTAATGGAGGGCATACAAAATATT-----------------------------------AGCCAAATATTAGCTTCATCTTCGAG--------A--A---ATTTTC--------T-TGTATAATG--TAAT-GTTTGCATTTTGCAAACAA-TTAATAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................TGCCCTTATATCCTCGATGTCGCGACG...................................................................................................................................................................................2732.00633000
................................................................................GAGTAGTGGATGCTAATGGAGGGCA..................................................................................................................................................2521.00202000
..CGG------AA------------------TACTACGACATGAATGCCC.........................................................................................................................................................................................................2430.67202000
..................................TACGACATGAATGCCCTTATATCC.................................................................................................................................................................................................2430.67202000
....................................................ATATCCTCGATGTCGCGACGTCT................................................................................................................................................................................2330.67202000
..CGG------AA------------------TACTACGACATGAATGCCCT........................................................................................................................................................................................................2530.67202000
...............................TACTACGACATGAATGCCCTTATATCC.................................................................................................................................................................................................2730.67202000
.....................................................................ACGTCTCAGAGGAGTAGTGGATG...............................................................................................................................................................2330.67202000
...........................................................................CAGAGGAGTAGTGGATGCTAATGG........................................................................................................................................................2420.50101000
..........................................................................TCAGAGGAGTAGTGGATGCTAATGG........................................................................................................................................................2520.50101000
...........................................................................CAGAGGAGTAGTGGATGCTAATGGAG......................................................................................................................................................2620.50100010
...........AA------------------TACTACGACATGAATGCCCTTATATCC.................................................................................................................................................................................................2930.33101000
...................................................................CGACGTCTCAGAGGAGTAGTGG..................................................................................................................................................................2230.33101000
.............................................TGCCCTTATATCCTCGATGTCGCGACGTC.................................................................................................................................................................................2930.33110000
...GG------AA------------------TACTACGACATGAATGCCC.........................................................................................................................................................................................................2330.33101000
...GG------AA------------------TACTACGACATGAATGCCCT........................................................................................................................................................................................................2430.33101000
...................................ACGACATGAATGCCCTTATATCCTCG..............................................................................................................................................................................................2630.33101000
........................................................................TCTCAGAGGAGTAGTGGATGCT.............................................................................................................................................................2230.33101000
...................................................................CGACGTCTCAGAGGAGTAGTGGATGC..............................................................................................................................................................2630.33101000
.....................................................................ACGTCTCAGAGGAGTAGTGGATGC..............................................................................................................................................................2430.33101000
.............................................TGCCCTTATATCCTCGATGTCGCGA.....................................................................................................................................................................................2530.33101000
..........................................................TCGATGTCGCGACGTCTCAGAGGAGTAG.....................................................................................................................................................................2830.33101000
.....................................................TATCCTCGATGTCGCGACGTCTCAG.............................................................................................................................................................................2530.33101000
...................................................................CGACGTCTCAGAGGAGTAGT....................................................................................................................................................................2030.33101000
.............................................TGCCCTTATATCCTCGATGTCGC.......................................................................................................................................................................................2330.33101000
.............................................TGCCCTTATATCCTCGATGTCG........................................................................................................................................................................................2230.33101000
.....................................................................................................................................................................TTCATCTTCGAG--------A--A---ATTTTC--------T-TGTA.......................................2540.25101000
......................................................................................................................................................................TCATCTTCGAG--------A--A---ATTTTC--------T-TGTA.......................................2440.25101000
.......................................................................................................................................................................CATCTTCGAG--------A--A---ATTTTC--------T-TGTATAA....................................2640.25101000
....................................................................................................................................................................CTTCATCTTCGAG--------A--A---ATTTTC--------T-TGTA.......................................2640.25101000
...........................................................................................................................................................................TTCGAG--------A--A---ATTTTC--------T-TGTATAATG--................................2440.25101000
.........................................................................................................................................................CCAAATATTAGCTTCATCTTCGAG--------A--A---AT.........................................................2850.20101000
.........................................................................................................................................................CCAAATATTAGCTTCATCTTCGAG--------A--...............................................................2550.20101000
dp5
ACCCG------AA------------------TATTACGACATAAATGTTCTAATATCATCGATGTCGCGACGTCTCAGAGGAGTATTGGATGCTAATGGAGGGCATACA--ATATT-----------------------------------AGCCAAATAG-AGCTGGATCCTTTAA--------A--G-ATATACAT--------T-TTTTAAAAT--TACT-GTTTGCATTTTGCAAAGAT-TTAATAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................ACGTCTCAGAGGAGTATTGGATG...............................................................................................................................................................23412.505004800101000
.....................................................................ACGTCTCAGAGGAGTATTGGATGC..............................................................................................................................................................2445.252101200204300
...........................................................................CAGAGGAGTATTGGATGCTAATG.........................................................................................................................................................2344.251701200000230
.........................................................................................................TACA--ATATT-----------------------------------AGCCAAATAG-AGCTGGA..................................................................................2612.0020000000200
................................................................................................................................................................................A--------A--G-ATATACAT--------T-TTTTAAAAT--TACT-G..........................2622.0040000000400
.................................................................................................................ATT-----------------------------------AGCCAAATAG-AGCTGGAT.................................................................................2112.0020000000200
.....................................................................ACGTCTCAGAGGAGTATTGGA.................................................................................................................................................................2142.0080800000000
...........................................................................CAGAGGAGTATTGGATGCTAATGG........................................................................................................................................................2441.7570400000210
...........................................................................CAGAGGAGTATTGGATGCTAATGGA.......................................................................................................................................................2541.5060401000010
.....................................................................ACGTCTCAGAGGAGTATTGGATGCT.............................................................................................................................................................2541.5060500001000
.....................................................................ACGTCTCAGAGGAGTATTGGAT................................................................................................................................................................2241.2550500000000
...........................................................................CAGAGGAGTATTGGATGCTAAT..........................................................................................................................................................2241.2550300000020
................................................TCTAATATCATCGATGTCGCGACG...................................................................................................................................................................................2411.0010100000000
...............................................TTCTAATATCATCGATGTCGCG......................................................................................................................................................................................2211.0010100000000
.......................................................TCATCGATGTCGCGACGTCTCAGA............................................................................................................................................................................2441.0040100000030
.......................................................TCATCGATGTCGCGACGTCTCAG.............................................................................................................................................................................2340.7530000000300
.....................................................................ACGTCTCAGAGGAGTATTG...................................................................................................................................................................1940.7530300000000
.....................................................TATCATCGATGTCGCGACGTCTCAGA............................................................................................................................................................................2640.7530000000120
......................................................................CGTCTCAGAGGAGTATTGGATG...............................................................................................................................................................2240.7530300000000
...........................................................................CAGAGGAGTATTGGATGCTAATGGAGG.....................................................................................................................................................2730.6720200000000
.....................................................................................TTGGATGCTAATGGAGGGCATAC...............................................................................................................................................2320.5010000000010
.....................................................................ACGTCTCAGAGGAGTATTGGATA...............................................................................................................................................................2340.5020200000000
.....................................................................ACGTCTCAGAGGAGTATTGGATGCTAA...........................................................................................................................................................2740.5020200000000
.....................................................TATCATCGATGTCGCGACGTCTCAG.............................................................................................................................................................................2540.5020000000020
..............................................................TGTCGCGACGTCTCAGAGGAGTAT.....................................................................................................................................................................2440.2510000000010
.............................................................................................................................................................................................................................CT-GTTTGCATTTTGCAAAGAT-T......2240.2510100000000
.......................................................TCATCGATGTCGCGACGTCTCAGAG...........................................................................................................................................................................2540.2510100000000
...........................................................................CAGAGGAGTATTGGATGCTA............................................................................................................................................................2040.2510000001000
............................................................................AGAGGAGTATTGGATGCTAATGG........................................................................................................................................................2340.2510100000000
.....................................................................ACGTCTCAGAGGAGTATT....................................................................................................................................................................1840.2510100000000
.....................................................................ACGTCTCAGAGGAGTATTGGATGT..............................................................................................................................................................2440.2510100000000
............................................................................AGAGGAGTATTGGATGCTAATG.........................................................................................................................................................2240.2510100000000
.....................................................................ACGTCTCAGAGGAGTATTGG..................................................................................................................................................................2040.2510100000000
.....................................................................ACGTCTCAGAGGAGTATTGGATGCTAAT..........................................................................................................................................................2840.2510100000000
.......................................................................GTCTCAGAGGAGTATTGGATGCTA............................................................................................................................................................2440.2510100000000
.....................................................................ACGTCTCAGAGGAGTATTGGATGCTA............................................................................................................................................................2640.2510100000000
......................................................................CGTCTCAGAGGAGTATTGGAT................................................................................................................................................................2140.2510100000000
.........................................................................CTCAGAGGAGTATTGGATGCT.............................................................................................................................................................2140.2510100000000
...........................................................................CAGAGGAGTATTGGATGA..............................................................................................................................................................1840.2510100000000
.....................................................................ACGTCTCAGAGGAGTATTGGAAA...............................................................................................................................................................2340.2510100000000
....................................................................GACGTCTCAGAGGAGTATTGGATG...............................................................................................................................................................2440.2510100000000
...........................................................CGATGTCGCGACGTCTCAGAGGA.........................................................................................................................................................................2340.2510000000100
..................................................TAATATCATCGATGTCGCGACGTC.................................................................................................................................................................................2450.2010000001000
droPer2
ACCCG------AA------------------TATTACGACATAAATGTCCTAATATCATCGATGTCGCGACGTCTCAGAGGAGTATTGGATGCTAATGGAGGACACACAAAATATT-----------------------------------AGCCAAATAG-AGCTGCATCCTTTAA--------A--G-ATATACAT--------T-TTTTAAAAT--TACT-GTTTGCATTTTGCAAAGAT-TTAATAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................CAGAGGAGTATTGGATGCTAATG.........................................................................................................................................................23111.0011260003
...........................................................................CAGAGGAGTATTGGATGCTAATGG........................................................................................................................................................24110.829060003
...................................................................................................................T-----------------------------------AGCCAAATAG-AGCTGCATCCTT.............................................................................2360.674040000
.....................................................................ACGTCTCAGAGGAGTATTGGATG...............................................................................................................................................................23110.647050002
.....................................................................ACGTCTCAGAGGAGTATTGGATGC..............................................................................................................................................................24110.556031002
...................................................................................................................T-----------------------------------AGCCAAATAG-AGCTGCATCC...............................................................................2160.332020000
...............................................................................GGAGTATTGGATGCTAATGGAGG.....................................................................................................................................................23110.182000002
...................................................................................................................T-----------------------------------AGCCAAATAG-AGCTGCATCCTTT............................................................................2460.171010000
.......................................................................................................................................................AGCCAAATAG-AGCTGCATCCTT.............................................................................2270.141010000
...........AA------------------TATTACGACATAAATGTCCTA.......................................................................................................................................................................................................2390.111010000
.................................................CTAATATCATCGATGTCGCG......................................................................................................................................................................................20100.101010000
.......................................................TCATCGATGTCGCGACGTCTCAGAGGAGT.......................................................................................................................................................................29100.101000001
..........................................................TCGATGTCGCGACGTCTCT..............................................................................................................................................................................19100.101010000
.............................................TGTCCTAATATCATCGATGTCGC.......................................................................................................................................................................................23100.101010000
..........................................AAATGTCCTAATATCATCGATG...........................................................................................................................................................................................22100.101010000
................................................CCTAATATCATCGATGTCGCG......................................................................................................................................................................................21100.101010000
......................................ACATAAATGTCCTAATATCATCGATG...........................................................................................................................................................................................26100.101010000
.....................................................................ACGTCTCAGAGGAGTATTGGAT................................................................................................................................................................22110.091010000
.....................................................................ACGTCTCAGAGGAGTATTGGATGCT.............................................................................................................................................................25110.091010000
................................................................TCGCGACGTCTCAGAGGAGTATTGG..................................................................................................................................................................25110.091010000
...........................................................................CAGAGGAGTATTGGATGCTAATGGAG......................................................................................................................................................26110.091010000
............................................................................AGAGGAGTATTGGATGCTAATGGAAA.....................................................................................................................................................26110.091010000
......................................................................CGTCTCAGAGGAGTATTGGATG...............................................................................................................................................................22110.091010000
...........................................................................CAGAGGAGTATTGGATGCTAATGGAGG.....................................................................................................................................................27110.091010000
...........................................................................CAGAGGAGTATTGGATGCTAATGGA.......................................................................................................................................................25110.091010000
.....................................................................ACGTCTCAGAGGAGTATTGGATGT..............................................................................................................................................................24110.091010000
.................................................................CGCGACGTCTCAGAGGAGTATTGGA.................................................................................................................................................................25110.091010000
droAna3
ACCTA------AT------------------AATTATGACCTAAAGGACCTTATTCATTCCATGCCTCGACGCCTGAATGCTGCATTAGATGCTAAGGGACAACACACCAAATATT-----------------------------------AGAATAATTAA-GGCTATAGTTTTTA--------A--G-TTTTCGTG--------A------------TCAT-GTGTTCATTTTGCAAAGAA-TTACTTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................CCAAATATT-----------------------------------AGAATAATT...........................................................................................1830.331010000
droBip1
TCCAG------AA------------------TATTACGACCTAAAACAACTTATTTATTCTATGCCTCGTCGCCTGAATGATGTCCTAGATGCCAAAGGACACCACACCAAGTATT-----------------------------------AGTAC----------TATAGTTTATA--------A--G-TTTTCATT--------AC-AAATGTAA-ACAAT-CTTTTAATTTTGCAAAGAA-TTAATTGSizeHit CountTotal NormTotal
No Reads
droKik1
ACCTC------AG------------------TATTATGACCTAAAAGGTCTTATAAATTCGATGTCGCGACGTCTCCATGCTGTTATGGATGCAAAAGGACTCCATACCAAATATT-----------------------------------AACCAAATTT-GTTAAATAGTTTTTA--------A--G-TTATAGGT--------A-TAATACACG--AAGT-GCTCGAAAATTTCAAACAA-TTAATTGSizeHit CountTotal NormTotal
No Reads
droFic1
GGCGC------TA----------------------ACGAGACATCCAAATTGGTGAACAGCATGGGTCGACGTTTACAAGCTGTAATAGATGCTAAGGGAGGACCCACAAAATATT-----------------------------------AAAAAAAATTT-CACTGA----------------AAAA---ATGATG--------T-TTTTATATC--GATT-TTCTGAAGTCTACGAATAA-TTTTTGTSizeHit CountTotal NormTotal
No Reads
droEle1
ACCGG------AA------------------TACTATGACCTAAATGTCCTTATACAGTCTATGTCTCGTCGCCTAAATGCAGTATTAGATGCCAAAGGACACCACACAAAATATT-----------------------------------AGAACATACAT-CGTTACATTTTTTA--------A--G-TTTTGGTT--------AC-GAATCTAA-CAAAT-GTTTGCATTTTGCAAAGAA-TTAATTGSizeHit CountTotal NormTotal
No Reads
droRho1
ACCTG------AT------------------TATTACGATGTAAACAAATTAATTTCGTCGATGCCCCGTCGCCTCAGAGCAGTAGTGGAGGCTAATGGCGGGCATGGTAAATATT-----------------------------------AGCCAATTAT-ATCTCATTATAACAA--------A--G-ATATAGTC--------T-TTTAAAAAC--AAAT-GTTTGG-CTTTGCAAATAATTTAATAASizeHit CountTotal NormTotal
No Reads
droBia1
ACCGA------AA------------------A-C---------------TTGGTCAAAAGCATGAATCGACGCTTACAAGCTGTTATAGATGCTAAGAGAGGACCCACCAAGTACT-----------------------------------AAGACCACCTA-A-CAAA----------------AACTA---ATATGTTTTTCTTCG-GCAT--------AT-CAATGAAGTGTTCGAATAA-TTTTTGTSizeHit CountTotal NormTotal
No Reads
droTak1
ACCTG------AA------------------TACTACGACTTAACTGGGCTTATACATTCCATGCCTCGACGCCTTAATGCAGCTTTGGAATCTCAGGGCCACCATACCAAATATT-----------------------------------AAGTCGGTATC-TTTTGTAGTTTTTA--------A--G-TTAGTGGT--------AT-AAA--TTC--AACT-GTTTGCATTTTGCAAACAA-TTAATTGSizeHit CountTotal NormTotal
No Reads
droEug1
TCCGT------TG------------------GAATATGACCTACAAAAACTGGTCAGTTCTATGAAAAATCGCATTAAGCTCGTAGTTGAAGCTAAGGGGTGTCATACTAAATATTAAAATTAGTTTAAGATAGTATAAGTTGATAAATAT------------AT----------------------------TCATT--------A--AA---CTGTAGTTT-AAGTACTTTGTGTAAACAC-TTTCTTGSizeHit CountTotal NormTotal
No Reads
dm3
CCCAC------AA------------------CAATATGATCTTAAA-AAGTTATTTTTTCAATGAAAAAACGAATACAAAGTGTTATTAATGCTAACGGTATGCATACAAAGTATTATAATTACCTCAT--TATTATAATTTGTTATAAAC------------TA----------------------------TTAGT--------CT-AAG--AAA--GCAT-AAGTAGTTTGTGCAAACAA-TTTCTCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................ATGAAAAAACGAATACAAAGTGTTAT....................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAATGCTAACGGTATGCATA................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................AAC------------TA----------------------------TTAGT--------CT-AAG--AAA--GCA.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CT-AAG--AAA--GCAT-AAGTAGTTT..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................................................TACAAAGTGTTATTAATGCTAACGGTA......................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TCAATGAAAAAACGAATACAAAGTGT.......................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TTCAATGAAAAAACGAATACAAAGTGT.......................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CGCGC------TT------------------GAATATGACCTCCAAAAACTTATCCATTCGATGAAAAAAAGGATTCAACTTGTAGCCAAAGCCAATGGGGGTGATACTATATACT-----------------------------------AAAACTTTTAA-AATTTTAATAAAATAATTTAAAAATTT---AGGA-------------------T--TAAA-CTTTGGAATTTGA--------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................TTGTAGCCAAAGCCAATGGGG......................................................................................................................................................2130.33100000000001000000
...........................................................................TCAACTTGTAGCCAAAGCCAATGGGG......................................................................................................................................................2630.33100000000001000000
...........................................................................TCAACTTGTAGCCAAAGCCAA...........................................................................................................................................................2130.33100000000001000000
droSec2
CCCGC------TT------------------GAATATGACCTCCTAAAACTTATCCATTCGATGAAAAAAAGGCTTCGACTTGTAGCCAAAGCCAATGGGGGTCATACTAAATACT-----------------------------------AAAACTTTTAA-AATTTTAATAAAATAATCTAAAAATTA---AGGAT--------TA-AAC--TTA--GGTT-TAGTGTTTTGTGTAAAGAG-TTTCTTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTCTC------GA------------------GAACATTGCCAAAA---TTTGTTGAAATCAATGCCAAAACGTATTAAATGTGTAATACAGGCCAAAGGTGACGTTACACAATTTT-----------------------------------AATTTATATT-AATTTGTTAT---------------------------------------ATTAG------------GCAGCGTT---CGAA-TTAATAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................TGTGTAATACAGGCCAAAGGTGACGT..................................................................................................................................................26200.45904220010000
...................................................GTTGAAATCAATGCCAAAACGTA.................................................................................................................................................................................23200.20402200000000
...................................................GTTGAAATCAATGCCAAAACGTAT................................................................................................................................................................................24200.15301200000000
...................................................................................TAATACAGGCCAAAGGTGACGTTACA..............................................................................................................................................26200.10201010000000
...................................................GTTGAAATCAATGCCAAAACGTATT...............................................................................................................................................................................25200.10202000000000
TTCTC------GA------------------GAACATTGCCAAAA---TTTGTT.....................................................................................................................................................................................................27200.10200200000000
......................................................................................TACAGGCCAAAGGTGACGTTACACA............................................................................................................................................25200.10201100000000
..................................................................................................GTGACGTTACACAATTTT-----------------------------------AATT................................................................................................22200.05101000000000
TTCTC------GA------------------GAACATTGCCAAAA---TTTGC......................................................................................................................................................................................................26200.05100100000000
......................................GCCAAAA---TTTGTTGAAATCAATGCC.........................................................................................................................................................................................25200.05100100000000
........................................................................................CAGGCCAAAGGTGACGTTACACAATTT........................................................................................................................................27200.05101000000000
.........................................................ATCAATGCCAAAACGTATTAAATGTGT.......................................................................................................................................................................27200.05100000010000
.........................................................................ATTAAATGTGTAATACAGGCC.............................................................................................................................................................21200.05100100000000
...................................................GTTGAAATCAATGCCAAAACGT..................................................................................................................................................................................22200.05101000000000
...............................................................................TGTGTAATACAGGCCAAAGGTGACGTT.................................................................................................................................................27200.05101000000000
.......................................................................GTATTAAATGTGTAATACAGG...............................................................................................................................................................21200.05101000000000
......................................................................................TACAGGCCAAAGGTGACGTTAC...............................................................................................................................................22200.05101000000000
......................................................................................TACAGGCCAAAGGTGACGTTACACAAT..........................................................................................................................................27200.05101000000000
..................................................................AAAACGTATTAAATGTGTAATACAGGCC.............................................................................................................................................................28200.05100100000000
.....................................................................................................ACGTTACACAATTTT-----------------------------------AATTTATATT-AATT.....................................................................................29200.05100000000001
...................................ATTGCCAAAA---TTTGTTGAAATC...............................................................................................................................................................................................22200.05101000000000
....................................................................................AATACAGGCCAAAGGTGACGTTACAC.............................................................................................................................................26200.05101000000000
...TC------GA------------------GAACATTGCCAAAA---TTTGTTGAAA.................................................................................................................................................................................................28200.05100100000000
.TCTC------GA------------------GAACATTGCCAAAA---TTT........................................................................................................................................................................................................23200.05100100000000
...................................................................................TAATACAGGCCAAAGGTGACGTTACAC.............................................................................................................................................27200.05101000000000
...........................................................................TAAATGTGTAATACAGGCCAAAGGTGA.....................................................................................................................................................27200.05101000000000
....................................................................................AATACAGGCCAAAGGTGACGTTACA..............................................................................................................................................25200.05100000010000
.....................................................................................ATACAGGCCAAAGGTGACGTTACACA............................................................................................................................................26200.05101000000000
......................................................................................TACAGGCCAAAGGTGACGTTACAC.............................................................................................................................................24200.05100100000000
..CTC------GA------------------GAACATTGCCAAAA---TTTGT......................................................................................................................................................................................................24200.05100000010000
...................................................................................................TGACGTTACACAATTTT-----------------------------------AATTTATAT...........................................................................................26200.05101000000000
....................................................................................AATACAGGCCAAAGGTGACGT..................................................................................................................................................21200.05101000000000
................................................................................GTGTAATACAGGCCAAAGGTGACGT..................................................................................................................................................25200.05101000000000
.................................................................................................GGTGACGTTACACAATTTT-----------------------------------AATTTA..............................................................................................25200.05101000000000
droEre2
AGTTAAGTCAGAGTGGTATGCCATTAACCCCGAA-ATTTGCG--CCAATTTAGTGAATTCAATGCCCCGTCCATGCTCAGCAGTTATAAAAAATAAAGGAAATACCACTAAATATT-----------------------------------AATATTACAAC-TGTTTTTATAAGAATTCATAAAAATTA---AGTT-------------------------T----TTCTTAGTTTTAAGAG-TT-----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/15/2015 at 03:05 PM