ID:

dmo_27

 Coordinate:

scaffold_6308:1309592-1309654 +

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.7 -33.7 -33.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATTCAATTTGTAATCGGTCTATAGAAAAAATCTAAACTAAAACATTTGTCTGCGAGCCAGAATCTAGTGAAATACGTTTTAGTTCGGGTATCACTAGATTCTAGGTCGTTGACAAAATGCTTTGCTTTGCAACAGAAAAATCGGAAACCCATCAAATGTGTAA

***********************************..((((.((((((((.((((.((((((((((((((.((.((........)).)).)))))))))))).)))))).))).))))).))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V110

male body		 M046

female body

 M060

embryo

 V056

head

 V049

head

 V041

embryo
..................................................TGCGAGCCAGAATCTAGTGAAAT.......................................................................................... 23 0 1 1896.00 1896 1812 22 14 28 13 7
..................................................TGCGAGCCAGAATCTAGTGAAA........................................................................................... 22 0 1 1101.00 1101 997 18 38 11 11 26
..................................................TGCGAGCCAGAATCTAGTGAAATA......................................................................................... 24 0 1 351.00 351 339 3 2 5 1 1
..........................................................................................TCACTAGATTCTAGGTCGTTGA................................................... 22 0 1 187.00 187 136 32 5 8 4 2
..................................................TGCGAGCCAGAATCTAGTGAA............................................................................................ 21 0 1 179.00 179 142 7 9 4 12 5
..................................................TGCGAGCCAGAATCTAGTGAAATC......................................................................................... 24 1 1 88.00 88 87 1 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGA............................................................................................. 20 0 1 65.00 65 36 9 1 9 5 5
..................................................TGCGAGCCAGAATCTAGTGAAAA.......................................................................................... 23 1 1 65.00 65 64 0 0 1 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATAA........................................................................................ 25 1 1 51.00 51 50 0 0 1 0 0
..........................................................................................TCACTAGATTCTAGGTCGTTG.................................................... 21 0 1 26.00 26 18 1 2 2 1 2
..................................................TGCGAGCCAGAATCTAGTGAAATAAA....................................................................................... 26 2 1 20.00 20 20 0 0 0 0 0
..........................................................................................TCACTAGATTCTAGGTCGTTGAT.................................................. 23 1 1 15.00 15 13 2 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAAAA......................................................................................... 24 1 1 14.00 14 14 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATCC........................................................................................ 25 1 1 13.00 13 11 1 0 1 0 0
..................................................TTCGAGCCAGAATCTAGTGAAAT.......................................................................................... 23 1 1 11.00 11 4 0 7 0 0 0
..........................................................................................TCACTAGATTCTAGGTCGTTGT................................................... 22 1 1 9.00 9 9 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATCA........................................................................................ 25 2 1 9.00 9 9 0 0 0 0 0
..........................................................................................TCACTAGATTCTGGGTCGTTGA................................................... 22 1 1 8.00 8 1 4 0 3 0 0
..........................................................................................TCACTAGATTCTAGGTCGTTGTC.................................................. 23 1 1 8.00 8 7 1 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATAT........................................................................................ 25 1 1 7.00 7 7 0 0 0 0 0
................................................TCTGCGAGCCAGAATCTAGTGA............................................................................................. 22 0 1 7.00 7 1 1 5 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATCCC....................................................................................... 26 2 1 6.00 6 6 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATT......................................................................................... 24 1 1 6.00 6 4 1 0 0 1 0
..........................................................................................TCACTAGATTCTAGGTCGTTGAA.................................................. 23 1 1 6.00 6 3 1 1 1 0 0
...........................................................................................CACTAGATTCTAGGTCGTTGA................................................... 21 0 1 6.00 6 0 6 0 0 0 0
...................................................GCGAGCCAGAATCTAGTGAAAT.......................................................................................... 22 0 1 5.00 5 4 1 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATAC........................................................................................ 25 0 1 5.00 5 5 0 0 0 0 0
..........................................................................................TCACTAGATTCTAGGTCGTTGAC.................................................. 23 0 1 5.00 5 5 0 0 0 0 0
..................................................TTCGAGCCAGAATCTAGTGAAA........................................................................................... 22 1 1 5.00 5 2 0 3 0 0 0
..................................................TGCGATCCAGAATCTAGTGAAA........................................................................................... 22 1 1 5.00 5 5 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTG.............................................................................................. 19 0 1 5.00 5 4 1 0 0 0 0
..................................................TCCGAGCCAGAATCTAGTGAAAT.......................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAG........................................................................................... 22 1 1 4.00 4 3 1 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAC........................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGCGAAAT.......................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATTC........................................................................................ 25 1 1 3.00 3 3 0 0 0 0 0
................................................TCTGCGAGCCAGAATCTAGTG.............................................................................................. 21 0 1 3.00 3 1 0 0 2 0 0
........................................................................................TATCACTAGATTCTAGGTCGTTG.................................................... 23 0 1 3.00 3 2 0 1 0 0 0
..................................................TGCGACCCAGAATCTAGTGAAAT.......................................................................................... 23 1 1 3.00 3 2 0 0 1 0 0
..................................................TGCGAGCCAGAATCTAGTGAAT........................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTAAAAT.......................................................................................... 23 1 1 3.00 3 2 0 0 1 0 0
..................................................TGAGAGCCAGAATCTAGTGAAAT.......................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..................................................TGCAAGCCAGAATCTAGTGAAA........................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0
...................................................GCGAGCCAGAATCTAGTGAAATA......................................................................................... 23 0 1 3.00 3 2 1 0 0 0 0
..................................................TGCTAGCCAGAATCTAGTGAAAT.......................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..........................................................................................TCACTAGATTCTAGGTCGTTGG................................................... 22 1 1 3.00 3 3 0 0 0 0 0
..................................................TGCGATCCAGAATCTAGTGAAAT.......................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..................................................TGCGAGCCAGAGTCTAGTGAAA........................................................................................... 22 1 1 3.00 3 2 1 0 0 0 0
..................................................TGCGAGTCAGAATCTAGTGAAAT.......................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATAG........................................................................................ 25 1 1 2.00 2 2 0 0 0 0 0
..................................................TGCAAGCCAGAATCTAGTGAAATCC........................................................................................ 25 2 1 2.00 2 2 0 0 0 0 0
..................................................TGCGAGCCGGAATCTAGTGAAA........................................................................................... 22 1 1 2.00 2 1 0 0 1 0 0
..................................................TGCGAGCCAGAATCTAGTGT............................................................................................. 20 1 1 2.00 2 2 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATCT........................................................................................ 25 2 1 2.00 2 2 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGGAAT.......................................................................................... 23 1 1 2.00 2 1 0 0 1 0 0
..................................................TGCGAGCCAGAACCTAGTGAAAT.......................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................TGCGAGCCATAATCTAGTGAAAT.......................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
.....................................................GAGCCAGAATCTAGTGAAAT.......................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0
.................................................CTGCGAGCCAGAATCTAGTGAAA........................................................................................... 23 0 1 2.00 2 0 0 2 0 0 0
..........................................................................................TCACTAGATTCTAGGTCGTTGATC................................................. 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TGCGAGTCAGAATCTAGTGAAA........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................TGCGAGCCATAATCTAGTGAAA........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................TGCGAGCCAGAATCTATTGAAAT.......................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................TACGAGCCAGAATCTAGTGAAAT.......................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................TGCGAGCTAGAATCTAGTGAAAT.......................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................TGCGAGCTAGAATCTAGTGAAA........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................TGAGAGCCAGAATCTAGTGAAA........................................................................................... 22 1 1 2.00 2 0 0 1 0 1 0
..................................................TGCGAGCCAGAATCTAGTGAAATACGT...................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
..........................................................................................TCACTAGATTCTAGGTCGTTGAAA................................................. 24 1 1 2.00 2 0 0 1 0 1 0
..................................................TGCGAGCCAGACTCTAGTGAAA........................................................................................... 22 1 1 2.00 2 0 0 0 0 1 1
..................................................CGCGAGCCAGAATCTAGTGAAA........................................................................................... 22 1 1 2.00 2 1 1 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATAAAA...................................................................................... 27 3 1 2.00 2 2 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTTAAATAA........................................................................................ 25 2 1 2.00 2 2 0 0 0 0 0
..................................................TGCGCGCCAGAATCTAGTGAAA........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................TCACTAGATTCTAGGTCGTT..................................................... 20 0 1 2.00 2 0 1 0 0 1 0
..................................................TGCGAGCAAGAATCTAGTGAAA........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...................................................GCGAGCCAGAATCTAGTGAAA........................................................................................... 21 0 1 2.00 2 1 0 0 0 1 0
..................................................TGCGAGCCAGAATCTAGTGAAATTT........................................................................................ 25 2 1 2.00 2 2 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATACA....................................................................................... 26 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................TCACTAGATTCTAGGTCGTTGAGC................................................. 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAT............................................................................................ 21 1 1 2.00 2 1 0 0 0 1 0
..................................................TGCGAGCCGGAATCTAGTGAAAT.......................................................................................... 23 1 1 2.00 2 1 0 0 0 1 0
..................................................TGCGAGCCAGAATCTAGTGCAAT.......................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................TGCGAGACAGAATCTAGTGAAAT.......................................................................................... 23 1 1 2.00 2 1 0 0 0 0 1
..................................................TGCGAGCCAGAATCTGGTGAAAT.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...................................................GCGAGCCAGAATCTAGTGAA............................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0
..................................................TACGAGCCAGAATCTAGTGAAA........................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
................................................TCTGCGAGCCAGAATCTAGTGAAA........................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGACAGAATCTAGTGAAA........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGGGAAAT.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TCACTAGATTCTAGGTCGTTTC................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..................................................TGTGAGCCAGAATCTAGTGAAA........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAAAAAA....................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0
...................................................TGCAGCCAGAATCTAGTGAAATA......................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................TCACTAGATTCTGGGTCGTTGT................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..................................................TGAGAGCCAGAATCTATTGGAAT.......................................................................................... 23 3 1 1.00 1 0 0 0 0 0 1
..................................................TGCCAGCCAGAATCTAGTGAAATA......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTTA............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TCACTAGATTCTAGGTCGTTGAAG................................................. 24 2 1 1.00 1 0 0 1 0 0 0
..................................................TGCAAGCCAGAATCTAGTGAAAT.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTTAAATA......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TCACTAGATTCTAGGTCTTTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAGTA......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..............................................TAACTTCGAGCCAGAATCTAGTGAAAT.......................................................................................... 27 3 1 1.00 1 0 1 0 0 0 0
..........................................................................................TCACTAGATTCTGTGTCGTTGA................................................... 22 2 1 1.00 1 0 0 0 0 1 0
..................................................TGCGGGCCAGAATCTAGTGAAA........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
....................................................CGAGCCAGAATCTAGTGAAATAA........................................................................................ 23 1 1 1.00 1 0 0 1 0 0 0
.................................................CTGCGAGCCAGAATCTAGTGAAAT.......................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATTAA....................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGCGAAA........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TCACTAGATTCTAGGTCGTTGAG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCATAATCTAGTGAAATA......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTCGTGATGT.......................................................................................... 23 3 1 1.00 1 0 0 0 1 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATTCC....................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0
..................................................TGCGTCCCAGAATCTAGTGAAA........................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................TCACTACATTCTAGGTCGTTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATATCA...................................................................................... 27 3 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATAAT....................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0
........................................................................................TATCACTAGATTCTAGGTCGT...................................................... 21 0 1 1.00 1 0 0 1 0 0 0
............................................................................................ACCAGATTCTAGGTCGTTGACA................................................. 22 1 1 1.00 1 0 0 1 0 0 0
..................................................TGCGAGCCATAATCTAGTGAAATC......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
........................................................................................TATCACTAGATTCTAGGTCGTT..................................................... 22 0 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGC............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TCACTAGATTCTCTGTCGTTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................AGCGAGCCAGAATCTAGTGA............................................................................................. 20 1 1 1.00 1 0 0 0 1 0 0
..................................................TGCGAGCCAGAATCTAGTGAAAAAA........................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0
..................................................TGGGAGCCAGGATCTAGTGAAGT.......................................................................................... 23 3 1 1.00 1 0 0 0 1 0 0
..................................................TGCGAGCCAGAATCTACTGAAA........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TCACTAGATTCTAGGTCGTTGACT................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATATA....................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTCAAATA......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGCGAA............................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTAAAATA......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TCACTAGATTCTGGGTCGTTG.................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..................................................TGCGCGCCAGAATCTAGAGAGAT.......................................................................................... 23 3 1 1.00 1 0 0 0 0 1 0
..........................................................................................TCACTAGATTCTAGGTCGTC..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCAAGAATCTAGTGAAAT.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAAAT......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGGATCTAGTGAA............................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCAAGCCAGAATCTAGTGAAATA......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCTAGAATCTAGTTAAA........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TCACTAGATTCTGGGTCGTTGAAA................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TCACTAGATTCTCGGTCGTTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................TCCGCGAGCCAGAATCTAGTGA............................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATGC........................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAACCAGAATCTAGTGAAAT.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGATAT.......................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0
...................................................TCGAGCCAGAATCTAGTGAAATA......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TCACTAGATTCTAGGTCGTTGTCCC................................................ 25 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................TCACTAGATTCTAGGTCGTTGC................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.................................................GTGCGAGCCAGAATCTAGTGAAAT.......................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAAC.......................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAATAT......................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAGTCTAGTGAAAT.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TACGAGCCAGAATCTAGTGAAATA......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATATAGTGAAAT.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TCACTAGATCCGAGGTCGTTGA................................................... 22 2 1 1.00 1 0 0 0 1 0 0
..................................................TCCGAGCCAGAATCTAGTGAAA........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCAAGCCAGAATCTAGTGAA............................................................................................ 21 1 1 1.00 1 0 0 0 0 0 1
...................................................CCGAGCCAGAATTTAGTGAAA........................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TCACTAGATTCTAGGTCGTTGACC................................................. 24 1 1 1.00 1 0 1 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTC.............................................................................................. 19 1 1 1.00 1 0 1 0 0 0 0
..................................................TGCAAGCCAGAATCTAGTGAAAA.......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGGCAGAATCTAGTGAAATA......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAAAATCTAGTGAAATAT........................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGGAA........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TCACTAGATTCTAGGTCGTTGTAA................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGAGAAAT.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGTCAGAGTCTAGTGAAA........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCGGAATCTAGTGAAATA......................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
..................................................TGCGAGCCAGCATCTAGTAAAA........................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..................................................TGCGAGCCAGAATCTAGCAAA............................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TCACTAGATTCTAGGTCGTTGGC.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................CTAGATTCTAGGTCGTTGACA................................................. 21 0 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATCAA....................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................TGACTAGATTCTAGGTCGTTGA................................................... 22 1 1 1.00 1 0 0 1 0 0 0
..................................................TGCGAGCCAGAATCTCTTGAAAT.......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...................................................GCGAGCCAGAATCTAGTGAAATAG........................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTTGTGAAA........................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
..................................................TTCGAGCCAGAATCTAGTGAA............................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTTAAA........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATACGTT..................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
...................................................GCGAGCCGGAATCTAGTGA............................................................................................. 19 1 1 1.00 1 0 1 0 0 0 0
..................................................TGCTAGCCAGAATCTAGTGAAAA.......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TCACTAGATTCTGGGTCGTTGAGT................................................. 24 3 1 1.00 1 0 0 0 0 1 0
..................................................TGCGAGCCAGACTCTAGTGA............................................................................................. 20 1 1 1.00 1 0 0 0 1 0 0
..................................................TTAGAGCCAGAATCTAGTGAAA........................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..................................................GGCGAGCCAGAATCTAGTGAAAT.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAATA.......................................................................................... 23 2 1 1.00 1 0 0 0 0 0 1
..................................................TGCGGGCCAGAATCTAGTGAAAT.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TTCGAGCCAGAATCTAGTGAAATAA........................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0
..................................................TGCGACCCAGAATCTAGTGA............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGCAATAT........................................................................................ 25 2 1 1.00 1 0 0 0 0 1 0
..................................................TACGAGCCAGAATCTAGTGAAGT.......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................CACTAGATTCTGGGTCGTTGA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATTA........................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0
..................................................TGCGAGCCAGAATCTAGTGAAATACGTC..................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0
...................................................TGCAGCCAGAATCTAGTGAAAT.......................................................................................... 22 3 3 0.67 2 2 0 0 0 0 0
..........................................................................................TCACTGGATTCAGGGTCGTTGA................................................... 22 3 2 0.50 1 0 0 0 1 0 0
..................................................TGCGAGCCAGAATCTAGGAA............................................................................................. 20 2 2 0.50 1 1 0 0 0 0 0
..........................................................................................TCACTGGATTCTGGGTCGTTG.................................................... 21 2 2 0.50 1 1 0 0 0 0 0
..........................................................................................TCACTGGATTCTGGGTCGTTGA................................................... 22 2 2 0.50 1 0 0 0 1 0 0
..........................................................................................TCACTGGATTCTGGGGCGTTGA................................................... 22 3 3 0.33 1 0 0 0 0 1 0
..........................................................................................TCACTGGATTCTGGGTTGTTGA................................................... 22 3 3 0.33 1 0 0 0 1 0 0
..................................................TGCGAGCCAGAATCTTGAAA............................................................................................. 20 3 13 0.15 2 2 0 0 0 0 0

Anti-sense strand reads

TAAGTTAAACATTAGCCAGATATCTTTTTTAGATTTGATTTTGTAAACAGACGCTCGGTCTTAGATCACTTTATGCAAAATCAAGCCCATAGTGATCTAAGATCCAGCAACTGTTTTACGAAACGAAACGTTGTCTTTTTAGCCTTTGGGTAGTTTACACATT

************************************..((((.((((((((.((((.((((((((((((((.((.((........)).)).)))))))))))).)))))).))).))))).))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 V049

head
.........................................................................................................................AACGAAACGTTGTCTTTTTAGCCTTT................ 26 0 1 1.00 1 1 0
................................ATTTGATGTTGTAATCAGAC............................................................................................................... 20 2 1 1.00 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6308:1309542-1309704 + dmo_27 confident ATTCAATTTGTAATCGGTCTATAGAAAAAATCTAAACTAAAACATTTGTCTGCGAGCCAGAATCTAGTGAAATACGTTTTAGTTCGGGTATCACTAGATTCTAGGTCGTTGACAAAATGCTTTGCTTTGCAACAGAAAAATCGGAAACCCATCAAATGTGTAA
droEle1 scf7180000491249:2203261-2203262 + AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ATTCAATTTGTAATCGGTCTATAGAAAAAATCTAAACTAAAACATTTGTCTGCGAGCCAGAATCTAGTGAAATACGTTTTAGTTCGGGTATCACTAGATTCTAGGTCGTTGACAAAATGCTTTGCTTTGCAACAGAAAAATCGGAAACCCATCAAATGTGTAASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..................................................TGCGAGCCAGAATCTAGTGAAAT..........................................................................................2311896.0018962271328141812
..................................................TGCGAGCCAGAATCTAGTGAAA...........................................................................................2211101.0011011826111138997
..................................................TGCGAGCCAGAATCTAGTGAAATA.........................................................................................241351.0035131152339
..........................................................................................TCACTAGATTCTAGGTCGTTGA...................................................221187.00187322485136
..................................................TGCGAGCCAGAATCTAGTGAA............................................................................................211179.00179751249142
..................................................TGCGAGCCAGAATCTAGTGAAATC.........................................................................................24188.00881000087
..................................................TGCGAGCCAGAATCTAGTGA.............................................................................................20165.00659559136
..................................................TGCGAGCCAGAATCTAGTGAAAA..........................................................................................23165.00650001064
..................................................TGCGAGCCAGAATCTAGTGAAATAA........................................................................................25151.00510001050
..........................................................................................TCACTAGATTCTAGGTCGTTG....................................................21126.00261212218
..................................................TGCGAGCCAGAATCTAGTGAAATAAA.......................................................................................26120.00200000020
..........................................................................................TCACTAGATTCTAGGTCGTTGAT..................................................23115.00152000013
..........................................................................................TCACTAGATTCTAGGTCGTTGT...................................................2219.009000009
..................................................TGCGAGCCAGAATCTAGTGAAATCA........................................................................................2519.009000009
..................................................TGCGAGCCAGAATCTAGTGAAATAT........................................................................................2517.007000007
................................................TCTGCGAGCCAGAATCTAGTGA.............................................................................................2217.007100051
..................................................TGCGAGCCAGAATCTAGTGAAATT.........................................................................................2416.006101004
..........................................................................................TCACTAGATTCTAGGTCGTTGAA..................................................2316.006100113
...........................................................................................CACTAGATTCTAGGTCGTTGA...................................................2116.006600000
...................................................GCGAGCCAGAATCTAGTGAAAT..........................................................................................2215.005100004
..................................................TGCGAGCCAGAATCTAGTGAAATAC........................................................................................2515.005000005
..........................................................................................TCACTAGATTCTAGGTCGTTGAC..................................................2315.005000005
..................................................TGCGAGCCAGAATCTAGTG..............................................................................................1915.005100004
..................................................TGCGAGCCAGAATCTAGTGAAG...........................................................................................2214.004100003
..................................................TGCGAGCCAGAATCTAGTGAAC...........................................................................................2214.004000004
................................................TCTGCGAGCCAGAATCTAGTG..............................................................................................2113.003000201
........................................................................................TATCACTAGATTCTAGGTCGTTG....................................................2313.003000012
..................................................TGCGAGCCAGAATCTAGTGAAT...........................................................................................2213.003000003
...................................................GCGAGCCAGAATCTAGTGAAATA.........................................................................................2313.003100002
..........................................................................................TCACTAGATTCTAGGTCGTTGG...................................................2213.003000003
..................................................TGCGAGCCAGAATCTAGTGAAATAG........................................................................................2512.002000002
..................................................TGCGAGCCAGAATCTAGTGT.............................................................................................2012.002000002
..................................................TGCGAGCCAGAATCTAGTGAAATCT........................................................................................2512.002000002
.....................................................GAGCCAGAATCTAGTGAAAT..........................................................................................2012.002000002
.................................................CTGCGAGCCAGAATCTAGTGAAA...........................................................................................2312.002000020
..........................................................................................TCACTAGATTCTAGGTCGTTGATC.................................................2412.002000002
..................................................TGCGAGCCAGAATCTAGTGAAATACGT......................................................................................2712.002000002
..................................................TGCGAGCCAGAATCTAGTGAAATAAAA......................................................................................2712.002000002
..........................................................................................TCACTAGATTCTAGGTCGTT.....................................................2012.002101000
...................................................GCGAGCCAGAATCTAGTGAAA...........................................................................................2112.002001001
..................................................TGCGAGCCAGAATCTAGTGAAATTT........................................................................................2512.002000002
..................................................TGCGAGCCAGAATCTAGTGAAATACA.......................................................................................2612.002000002
..........................................................................................TCACTAGATTCTAGGTCGTTGAGC.................................................2412.002000002
..................................................TGCGAGCCAGAATCTAGTGAT............................................................................................2112.002001001
...................................................GCGAGCCAGAATCTAGTGAA............................................................................................2011.001100000
................................................TCTGCGAGCCAGAATCTAGTGAAA...........................................................................................2411.001000001
..........................................................................................TCACTAGATTCTAGGTCGTTTC...................................................2211.001100000
..........................................................................................TCACTAGATTCTAGGTCGTTGAAG.................................................2411.001000010
....................................................CGAGCCAGAATCTAGTGAAATAA........................................................................................2311.001000010
.................................................CTGCGAGCCAGAATCTAGTGAAAT..........................................................................................2411.001000001
..................................................TGCGAGCCAGAATCTAGTGAAATTAA.......................................................................................2611.001000001
..........................................................................................TCACTAGATTCTAGGTCGTTGAG..................................................2311.001000001
..................................................TGCGAGCCAGAATCTAGTGAAATATCA......................................................................................2711.001000001
..................................................TGCGAGCCAGAATCTAGTGAAATAAT.......................................................................................2611.001000001
........................................................................................TATCACTAGATTCTAGGTCGT......................................................2111.001000010
........................................................................................TATCACTAGATTCTAGGTCGTT.....................................................2211.001000001
..................................................TGCGAGCCAGAATCTAGTGC.............................................................................................2011.001000001
..........................................................................................TCACTAGATTCTAGGTCGTTGACT.................................................2411.001000001
..................................................TGCGAGCCAGAATCTAGTGAAATATA.......................................................................................2611.001000001
..........................................................................................TCACTAGATTCTAGGTCGTC.....................................................2011.001000001
..................................................TGCGAGCCAGAATCTAGTGAAAAT.........................................................................................2411.001000001
..........................................................................................TCACTAGATTCTAGGTCGTTGC...................................................2211.001000001
..................................................TGCGAGCCAGAATCTAGTGAAAC..........................................................................................2311.001000010
..................................................TGCGAGCCAGAATCTAGTGAATAT.........................................................................................2411.001000001
..........................................................................................TCACTAGATTCTAGGTCGTTGACC.................................................2411.001100000
..................................................TGCGAGCCAGAATCTAGTC..............................................................................................1911.001100000
.............................................................................................CTAGATTCTAGGTCGTTGACA.................................................2111.001000001
..................................................TGCGAGCCAGAATCTAGTGAAATCAA.......................................................................................2611.001000001
...................................................GCGAGCCAGAATCTAGTGAAATAG........................................................................................2411.001000001
..................................................TGCGAGCCAGAATCTAGTGAAATACGTT.....................................................................................2811.001000001
..................................................TGCGAGCCAGAATCTAGTGAATA..........................................................................................2311.001010000
..................................................TGCGAGCCAGAATCTAGTGAAATTA........................................................................................2511.001000001
..................................................TGCGAGCCAGAATCTAGTGAAATACGTC.....................................................................................2811.001000001
droEle1
AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 10/20/2015 at 07:28 PM