dmo_267

Name	Class	Family	Strand
Helitron-1_DYak	RC	Helitron	-

Name

Class

Family

Strand

Helitron-1_DYak

Helitron

GGCATTTTAATGGACATAGGTTTCAACTCATCCATACCCTCTATTTTGTGGATAAAATTTTTTGAAGAGAGTGTAGGAGCTAATGCGCGTGCTAAATGCGCACATCATCAGGAGCCTTCATGGACTCCAGTACA .(((((.......((((...((((((...(((((((..........)))))))........))))))...)))).......)))))...*********************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V110 male body	V041 embryo
.............ACATAGGTTTCAACTCATCCATACCC...............................................................................................	26	0	1	18.00	18	8	10	0	0
.............ACATAGGTTTCAACTCATCCATACC................................................................................................	25	0	1	16.00	16	4	12	0	0
.................................................................AGAGAGTGTAGGAGCTAATGCGC..............................................	23	0	4	7.00	28	21	3	3	1
.............ACATAGGTTTCAACTCATCCATAC.................................................................................................	24	0	1	6.00	6	4	2	0	0
.............ACATAGGTTTCAACTCATCCATA..................................................................................................	23	0	1	5.00	5	3	2	0	0
.............ACATAGGTTTCAACTCATCCATACCCTC.............................................................................................	28	0	1	5.00	5	5	0	0	0
.................................................................AGAGAGTGTAGGAGCTAATGCG...............................................	22	0	4	1.75	7	7	0	0	0
.................................................................AGAGAGTGTAGGAGCTAATGC................................................	21	0	4	1.75	7	5	1	1	0
.................................................................AGAGAGTGTAGGAGCTAATGCGCGTG...........................................	26	0	4	1.25	5	5	0	0	0
..............CATAGGTTTCAACTCATCCATACCC...............................................................................................	25	0	1	1.00	1	1	0	0	0
............CACATAGGTTTCAACTCATCCATACCC...............................................................................................	27	1	1	1.00	1	0	1	0	0
.............ACATAGTTTTCAACTCATCCATAC.................................................................................................	24	1	1	1.00	1	1	0	0	0
...............ATAGGTTTCAACTCATCCATACC................................................................................................	23	0	1	1.00	1	0	1	0	0
.............ACATAGTTTTCAACTCATCCATAA.................................................................................................	24	2	1	1.00	1	0	1	0	0
..............CATAGGTTTCAACTCATCCATACC................................................................................................	24	0	1	1.00	1	1	0	0	0
.............ACACAGGTTTCAACTCATCCATA..................................................................................................	23	1	1	1.00	1	0	1	0	0
..............CATAGGTTTCAACTCATCCATA..................................................................................................	22	0	1	1.00	1	1	0	0	0
.............ACATAGGTTTCAACTCATCCAT...................................................................................................	22	0	1	1.00	1	1	0	0	0
.............AGATAGGTTTCAACTCATCCATACC................................................................................................	25	1	1	1.00	1	0	1	0	0
.............ACATAGGCTTCAACTTATCCAT...................................................................................................	22	2	1	1.00	1	0	1	0	0
....................TTTCAACTCATCCATACCCTCTAT..........................................................................................	24	0	1	1.00	1	1	0	0	0
............GACATAGGTTTCAACTCATCCATAC.................................................................................................	25	0	1	1.00	1	1	0	0	0
.................................................................AGAGAGTGTAGGAGCTAATGCGCG.............................................	24	0	4	0.50	2	2	0	0	0
.............ACATAGGTTTCAACTCATCC.....................................................................................................	20	0	3	0.33	1	1	0	0	0
..............CATAGGTTTCAACTCATCC.....................................................................................................	19	0	3	0.33	1	1	0	0	0
...............................................GTGGATAAAATTTTTTGAAGAGAGTGT............................................................	27	0	4	0.25	1	0	0	1	0
.................................................................ATAGAGTGTAGGAGCTAATGC................................................	21	1	4	0.25	1	0	1	0	0
.................................................................AGAGAGTGTAGGAGCTAATGCGCGTGC..........................................	27	0	4	0.25	1	1	0	0	0
.......................................................................................................ATCTTCAGGAGCCTTCATGGACC........	23	2	4	0.25	1	0	1	0	0
...............................................................GAAGAGAGTGTAGGAGCTAATGCGCG.............................................	26	0	4	0.25	1	1	0	0	0
.................................................................AGAGAGTGTAGAAGCTAATGC................................................	21	1	4	0.25	1	1	0	0	0
.....................................................................AGTGTAGGAGCTAATGCGCGT............................................	21	0	4	0.25	1	1	0	0	0
.....................................................................AGTGTAGGAGCTAATGCGCGTGC..........................................	23	0	4	0.25	1	1	0	0	0
.................................................................AGAGAGTGTAGAAGCTAATGCG...............................................	22	1	4	0.25	1	1	0	0	0
.................................................................TTAGAGTGTAGGAGCTAATGCGC..............................................	23	2	4	0.25	1	0	1	0	0
.................................................................AGAGAGTGTAGGAGCTAATGCGCGT............................................	25	0	4	0.25	1	1	0	0	0
..................................................................GAGAGTGTAGGAGCTAATGCGC..............................................	22	0	4	0.25	1	1	0	0	0
..................................................................GAGAGTGTAGGAGCTAATGCGCGTG...........................................	25	0	4	0.25	1	1	0	0	0
............................................................................................TAAATGCGCACATCATCAGGAGCCT.................	25	0	5	0.20	1	1	0	0	0
.........................................................................................TGCTAAATGCGCACATCATCAGGAGCC..................	27	0	5	0.20	1	1	0	0	0

GGCATTTTAATGGACATAGGTTTCAACTCATCCATACCCTCTATTTTGTGGATAAAATTTTTTGAAGAGAGTGTAGGAGCTAATGCGCGTGCTAAATGCGCACATCATCAGGAGCCTTCATGGACTCCAGTACA
.(((((.......((((...((((((...(((((((..........)))))))........))))))...)))).......)))))...*********************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V110
male body

V041
embryo

.............ACATAGGTTTCAACTCATCCATACCC...............................................................................................

18.00

.............ACATAGGTTTCAACTCATCCATACC................................................................................................

16.00

.................................................................AGAGAGTGTAGGAGCTAATGCGC..............................................

7.00

.............ACATAGGTTTCAACTCATCCATAC.................................................................................................

6.00

.............ACATAGGTTTCAACTCATCCATA..................................................................................................

5.00

.............ACATAGGTTTCAACTCATCCATACCCTC.............................................................................................

5.00

.................................................................AGAGAGTGTAGGAGCTAATGCG...............................................

1.75

.................................................................AGAGAGTGTAGGAGCTAATGC................................................

1.75

.................................................................AGAGAGTGTAGGAGCTAATGCGCGTG...........................................

1.25

..............CATAGGTTTCAACTCATCCATACCC...............................................................................................

1.00

............CACATAGGTTTCAACTCATCCATACCC...............................................................................................

1.00

.............ACATAGTTTTCAACTCATCCATAC.................................................................................................

1.00

...............ATAGGTTTCAACTCATCCATACC................................................................................................

1.00

.............ACATAGTTTTCAACTCATCCATAA.................................................................................................

1.00

..............CATAGGTTTCAACTCATCCATACC................................................................................................

1.00

.............ACACAGGTTTCAACTCATCCATA..................................................................................................

1.00

..............CATAGGTTTCAACTCATCCATA..................................................................................................

1.00

.............ACATAGGTTTCAACTCATCCAT...................................................................................................

1.00

.............AGATAGGTTTCAACTCATCCATACC................................................................................................

1.00

.............ACATAGGCTTCAACTTATCCAT...................................................................................................

1.00

....................TTTCAACTCATCCATACCCTCTAT..........................................................................................

1.00

............GACATAGGTTTCAACTCATCCATAC.................................................................................................

1.00

.................................................................AGAGAGTGTAGGAGCTAATGCGCG.............................................

0.50

.............ACATAGGTTTCAACTCATCC.....................................................................................................

0.33

..............CATAGGTTTCAACTCATCC.....................................................................................................

0.33

...............................................GTGGATAAAATTTTTTGAAGAGAGTGT............................................................

0.25

.................................................................ATAGAGTGTAGGAGCTAATGC................................................

0.25

.................................................................AGAGAGTGTAGGAGCTAATGCGCGTGC..........................................

0.25

.......................................................................................................ATCTTCAGGAGCCTTCATGGACC........

0.25

...............................................................GAAGAGAGTGTAGGAGCTAATGCGCG.............................................

0.25

.................................................................AGAGAGTGTAGAAGCTAATGC................................................

0.25

.....................................................................AGTGTAGGAGCTAATGCGCGT............................................

0.25

.....................................................................AGTGTAGGAGCTAATGCGCGTGC..........................................

0.25

.................................................................AGAGAGTGTAGAAGCTAATGCG...............................................

0.25

.................................................................TTAGAGTGTAGGAGCTAATGCGC..............................................

0.25

.................................................................AGAGAGTGTAGGAGCTAATGCGCGT............................................

0.25

..................................................................GAGAGTGTAGGAGCTAATGCGC..............................................

0.25

..................................................................GAGAGTGTAGGAGCTAATGCGCGTG...........................................

0.25

............................................................................................TAAATGCGCACATCATCAGGAGCCT.................

0.20

.........................................................................................TGCTAAATGCGCACATCATCAGGAGCC..................

0.20

CCGTAAAATTACCTGTATCCAAAGTTGAGTAGGTATGGGAGATAAAACACCTATTTTAAAAAACTTCTCTCACATCCTCGATTACGCGCACGATTTACGCGTGTAGTAGTCCTCGGAAGTACCTGAGGTCATGT *********************************************.(((((.......((((...((((((...(((((((..........)))))))........))))))...)))).......)))))...	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V110 male body	V041 embryo
..................CCAAAGTTGAGTAGGTATGGGAGAT...........................................................................................	25	0	1	7.00	7	3	3	1	0
.................................................CCTATTTTAAAAAACTTCTCTCACAT...........................................................	26	0	4	5.00	20	17	3	0	0
..............................................ACACCTATTTTAAAAAACTTCTCTCACAT...........................................................	29	0	4	4.00	16	13	3	0	0
CCGTAAAATTACCTGTATCCAAA...............................................................................................................	23	0	4	3.50	14	6	8	0	0
...............................................CACCTATTTTAAAAAACTTCTCTCACAT...........................................................	28	0	4	2.50	10	7	3	0	0
.......................GTTGAGTAGGTATGGGAGAT...........................................................................................	20	0	1	2.00	2	2	0	0	0
...................................................................................ACGCGCACGATTTACGCGTGTAGTAGT........................	27	0	4	1.75	7	7	0	0	0
................................................ACCTATTTTAAAAAACTTCTCTCACAT...........................................................	27	0	4	1.00	4	4	0	0	0
..................CCAAAGTTGAGTAGGTATGGGAGA............................................................................................	24	0	1	1.00	1	1	0	0	0
.....................AAGTTGAGTAGGTATGGGAGAT...........................................................................................	22	0	1	1.00	1	1	0	0	0
..................CCAAAGTTGAGTAGGTATGGGTGAT...........................................................................................	25	1	1	1.00	1	0	1	0	0
.CGTAAAATTACCTGTATCCAAA...............................................................................................................	22	0	4	1.00	4	2	2	0	0
................ATCCAAAGTTGAGTAGGTATGGGAGAT...........................................................................................	27	0	1	1.00	1	1	0	0	0
..................................................CTATTTTAAAAAACTTCTCTCACAT...........................................................	25	0	4	0.75	3	2	1	0	0
..............................................ACACCTATTTTAAAAAACTTCTCTCACA............................................................	28	0	4	0.75	3	3	0	0	0
.................................................CCTATTTTAAAAAACTTCTCTCACGT...........................................................	26	1	4	0.75	3	0	3	0	0
....................................................................................................GTGTAGTAGTCCTCGGAAGTACCT..........	24	0	4	0.75	3	1	0	1	1
.................................................................................................CGCGTGTAGTAGTCCTCGGAAGTACCT..........	27	0	4	0.75	3	1	2	0	0
CCGTAAAATTACCTGTATCCAAAGTT............................................................................................................	26	0	4	0.50	2	0	2	0	0
......................................................................CACATCCTCGATTACGCGCACGATTT......................................	26	0	4	0.50	2	1	1	0	0
................................................................................................ACGCGTGTAGTAGTCCTCGGAAGTACCT..........	28	0	4	0.50	2	2	0	0	0
........................................................................................CACGATTTACGCGTGTAGTAGTCCT.....................	25	0	4	0.50	2	2	0	0	0
..................................................................................TACGCGCACGATTTACGCGTGTAGTAGT........................	28	0	4	0.50	2	2	0	0	0
................................................ACCTATTTTAAAAAACTTCTCTCACA............................................................	26	0	4	0.50	2	2	0	0	0
.................................................CCTATTTTAAAAAACTTCTCTCACA............................................................	25	0	4	0.50	2	2	0	0	0
..................................................................CTCTCACATCCTCGATTACGCGCACGATT.......................................	29	0	4	0.25	1	1	0	0	0
......................................................................................CGCACGATTTACGCGTGTAGTAGTCC......................	26	0	4	0.25	1	0	1	0	0
.................................................................................................CTCGTGTAGTAGTCCTCGGAAGTACCT..........	27	1	4	0.25	1	1	0	0	0
.................................................................................................CGCGTGTAGTAGTCCTCGGAAGTACCGG.........	28	1	4	0.25	1	0	1	0	0
...................................TGGGAGATAAAACACCTATTTT.............................................................................	22	0	4	0.25	1	1	0	0	0
.....AAATTACCTGTATCCAAAGTTGAGT........................................................................................................	25	0	4	0.25	1	1	0	0	0
...................................................................................................CGTGTAGTAGTCCTCGGAAGTACCT..........	25	0	4	0.25	1	1	0	0	0
...................................................................................................CGTGTAGTAGTCCTCGGAAGT..............	21	0	4	0.25	1	0	1	0	0
...................................................................................................CGTGTAGTAGTCCTCGGAAGTACCTG.........	26	0	4	0.25	1	1	0	0	0
.....................................GGAGATAAAACACCTATTTTAAAAAACT.....................................................................	28	0	4	0.25	1	1	0	0	0
..............................................................................................TTACGCGTGTAGTAGTCCTCGGAAGTA.............	27	0	4	0.25	1	1	0	0	0
.............................................AACACCTATTTTAAAAAACTTCTCTCACA............................................................	29	0	4	0.25	1	1	0	0	0
.CGTAAAATTACCTGTATCCAA................................................................................................................	21	0	4	0.25	1	1	0	0	0
....................................................................................CGCGCACGATTTACGCGTGTAGTAGT........................	26	0	4	0.25	1	1	0	0	0
..............................................................................CGATTACGCGCACGATTTACGCGTGTAGT...........................	29	0	4	0.25	1	1	0	0	0
....AAAATTACCTGTATCCAAAGTTGAGT........................................................................................................	26	0	4	0.25	1	1	0	0	0
...TAAAATTACCTGTATCCAAAGTT............................................................................................................	23	0	4	0.25	1	1	0	0	0
CCGTAAAATTACCTGTATCCAAACTAGC..........................................................................................................	28	3	4	0.25	1	0	1	0	0
.................................................................................................................CGGAAGTACCTGAGGTCATGT	21	0	4	0.25	1	0	1	0	0
......................................................................................CGCACGATTTACGCGTGTAGTAGTC.......................	25	0	4	0.25	1	1	0	0	0
....................................................................................CGCGCACGATTTACGCGTGTAGTAGTC.......................	27	0	4	0.25	1	1	0	0	0
.....................................................................................GCGCACGATTTACGCGTGTAGTAGT........................	25	0	4	0.25	1	1	0	0	0
.......ATTACCTGTATCCAAAGTTGAGT........................................................................................................	23	0	4	0.25	1	1	0	0	0
.................................................................................................................CGGAAGTACCTGAGGTCATG.	20	0	4	0.25	1	0	1	0	0
...............................................CACCTATTTTAAAAAACTTCTCTCACA............................................................	27	0	4	0.25	1	1	0	0	0
...................................................................................................CGTGTAGTAGTCCTCGGAAGTACCGG.........	26	1	4	0.25	1	0	1	0	0
...............................................................................................TACGCGTGTAGTAGTCCTCGGAAGTACCT..........	29	0	4	0.25	1	1	0	0	0
CCGTAAAATTACCTGTATCCAAT...............................................................................................................	23	1	4	0.25	1	0	1	0	0
.................................................................TCTCTCACATCCTCGATTACGCGCAC...........................................	26	0	4	0.25	1	1	0	0	0
.......................................................................................GCACGATTTACGCGTGTAGTAGTCCT.....................	26	0	4	0.25	1	1	0	0	0
.CGTAAAATTACCTGTATCTAAA...............................................................................................................	22	1	4	0.25	1	0	1	0	0
.................................................CCTATTTTAAAAAAATTCTCTCACAT...........................................................	26	1	4	0.25	1	1	0	0	0
.................TCGTAAGTTGGGTAGGTATG.................................................................................................	20	3	14	0.07	1	0	0	1	0
..................CCCAAATAGAGTAGGTATG.................................................................................................	19	3	18	0.06	1	0	0	1	0
CCGTAAAATTACCTTTATT...................................................................................................................	19	2	20	0.05	1	0	1	0	0

CCGTAAAATTACCTGTATCCAAAGTTGAGTAGGTATGGGAGATAAAACACCTATTTTAAAAAACTTCTCTCACATCCTCGATTACGCGCACGATTTACGCGTGTAGTAGTCCTCGGAAGTACCTGAGGTCATGT
*********************************************.(((((.......((((...((((((...(((((((..........)))))))........))))))...)))).......)))))...

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V110
male body

V041
embryo

..................CCAAAGTTGAGTAGGTATGGGAGAT...........................................................................................

7.00

.................................................CCTATTTTAAAAAACTTCTCTCACAT...........................................................

5.00

..............................................ACACCTATTTTAAAAAACTTCTCTCACAT...........................................................

4.00

CCGTAAAATTACCTGTATCCAAA...............................................................................................................

3.50

...............................................CACCTATTTTAAAAAACTTCTCTCACAT...........................................................

2.50

.......................GTTGAGTAGGTATGGGAGAT...........................................................................................

2.00

...................................................................................ACGCGCACGATTTACGCGTGTAGTAGT........................

1.75

................................................ACCTATTTTAAAAAACTTCTCTCACAT...........................................................

1.00

..................CCAAAGTTGAGTAGGTATGGGAGA............................................................................................

1.00

.....................AAGTTGAGTAGGTATGGGAGAT...........................................................................................

1.00

..................CCAAAGTTGAGTAGGTATGGGTGAT...........................................................................................

1.00

.CGTAAAATTACCTGTATCCAAA...............................................................................................................

1.00

................ATCCAAAGTTGAGTAGGTATGGGAGAT...........................................................................................

1.00

..................................................CTATTTTAAAAAACTTCTCTCACAT...........................................................

0.75

..............................................ACACCTATTTTAAAAAACTTCTCTCACA............................................................

0.75

.................................................CCTATTTTAAAAAACTTCTCTCACGT...........................................................

0.75

....................................................................................................GTGTAGTAGTCCTCGGAAGTACCT..........

0.75

.................................................................................................CGCGTGTAGTAGTCCTCGGAAGTACCT..........

0.75

CCGTAAAATTACCTGTATCCAAAGTT............................................................................................................

0.50

......................................................................CACATCCTCGATTACGCGCACGATTT......................................

0.50

................................................................................................ACGCGTGTAGTAGTCCTCGGAAGTACCT..........

0.50

........................................................................................CACGATTTACGCGTGTAGTAGTCCT.....................

0.50

..................................................................................TACGCGCACGATTTACGCGTGTAGTAGT........................

0.50

................................................ACCTATTTTAAAAAACTTCTCTCACA............................................................

0.50

.................................................CCTATTTTAAAAAACTTCTCTCACA............................................................

0.50

..................................................................CTCTCACATCCTCGATTACGCGCACGATT.......................................

0.25

......................................................................................CGCACGATTTACGCGTGTAGTAGTCC......................

0.25

.................................................................................................CTCGTGTAGTAGTCCTCGGAAGTACCT..........

0.25

.................................................................................................CGCGTGTAGTAGTCCTCGGAAGTACCGG.........

0.25

...................................TGGGAGATAAAACACCTATTTT.............................................................................

0.25

.....AAATTACCTGTATCCAAAGTTGAGT........................................................................................................

0.25

...................................................................................................CGTGTAGTAGTCCTCGGAAGTACCT..........

0.25

...................................................................................................CGTGTAGTAGTCCTCGGAAGT..............

0.25

...................................................................................................CGTGTAGTAGTCCTCGGAAGTACCTG.........

0.25

.....................................GGAGATAAAACACCTATTTTAAAAAACT.....................................................................

0.25

..............................................................................................TTACGCGTGTAGTAGTCCTCGGAAGTA.............

0.25

.............................................AACACCTATTTTAAAAAACTTCTCTCACA............................................................

0.25

.CGTAAAATTACCTGTATCCAA................................................................................................................

0.25

....................................................................................CGCGCACGATTTACGCGTGTAGTAGT........................

0.25

..............................................................................CGATTACGCGCACGATTTACGCGTGTAGT...........................

0.25

....AAAATTACCTGTATCCAAAGTTGAGT........................................................................................................

0.25

...TAAAATTACCTGTATCCAAAGTT............................................................................................................

0.25

CCGTAAAATTACCTGTATCCAAACTAGC..........................................................................................................

0.25

.................................................................................................................CGGAAGTACCTGAGGTCATGT

0.25

......................................................................................CGCACGATTTACGCGTGTAGTAGTC.......................

0.25

....................................................................................CGCGCACGATTTACGCGTGTAGTAGTC.......................

0.25

.....................................................................................GCGCACGATTTACGCGTGTAGTAGT........................

0.25

.......ATTACCTGTATCCAAAGTTGAGT........................................................................................................

0.25

.................................................................................................................CGGAAGTACCTGAGGTCATG.

0.25

...............................................CACCTATTTTAAAAAACTTCTCTCACA............................................................

0.25

...................................................................................................CGTGTAGTAGTCCTCGGAAGTACCGG.........

0.25

...............................................................................................TACGCGTGTAGTAGTCCTCGGAAGTACCT..........

0.25

CCGTAAAATTACCTGTATCCAAT...............................................................................................................

0.25

.................................................................TCTCTCACATCCTCGATTACGCGCAC...........................................

0.25

.......................................................................................GCACGATTTACGCGTGTAGTAGTCCT.....................

0.25

.CGTAAAATTACCTGTATCTAAA...............................................................................................................

0.25

.................................................CCTATTTTAAAAAAATTCTCTCACAT...........................................................

0.25

.................TCGTAAGTTGGGTAGGTATG.................................................................................................

0.07

..................CCCAAATAGAGTAGGTATG.................................................................................................

0.06

CCGTAAAATTACCTTTATT...................................................................................................................

0.05

Species	Coordinate	ID	Alignment
droMoj3	scaffold_4844:3412-3545 -	dmo_267	GGCATTTTAATGGACATAGGTTTCAACTCATCCATACCCTCTATTTTGTGGATAAAATTTTTTGAAGAGAGTGTAGGAGCTAATGCGCGTGCTAAATGCGCACATCATCAGGAGCCTTCATGGACTCCAGTACA
droRho1	scf7180000777148:3872-3881 +		TTTATCTATT----------------------------------------------------------------------------------------------------------------------------

Species

Coordinate

Alignment

droMoj3

scaffold_4844:3412-3545 -

dmo_267

GGCATTTTAATGGACATAGGTTTCAACTCATCCATACCCTCTATTTTGTGGATAAAATTTTTTGAAGAGAGTGTAGGAGCTAATGCGCGTGCTAAATGCGCACATCATCAGGAGCCTTCATGGACTCCAGTACA

droRho1

scf7180000777148:3872-3881 +

TTTATCTATT----------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GGCATTTTAATGGACATAGGTTTCAACTCATCCATACCCTCTATTTTGTGGATAAAATTTTTTGAAGAGAGTGTAGGAGCTAATGCGCGTGCTAAATGCGCACATCATCAGGAGCCTTCATGGACTCCAGTACA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............ACATAGGTTTCAACTCATCCATACCC...............................................................................................	26	1	18.00	18	8	0	0	0	10	0
.............ACATAGGTTTCAACTCATCCATACC................................................................................................	25	1	16.00	16	4	0	0	0	12	0
.................................................................AGAGAGTGTAGGAGCTAATGCGC..............................................	23	4	7.00	28	21	1	0	0	3	3
.............ACATAGGTTTCAACTCATCCATAC.................................................................................................	24	1	6.00	6	4	0	0	0	2	0
.............ACATAGGTTTCAACTCATCCATA..................................................................................................	23	1	5.00	5	3	0	0	0	2	0
.............ACATAGGTTTCAACTCATCCATACCCTC.............................................................................................	28	1	5.00	5	5	0	0	0	0	0
.................................................................AGAGAGTGTAGGAGCTAATGCG...............................................	22	4	1.75	7	7	0	0	0	0	0
.................................................................AGAGAGTGTAGGAGCTAATGC................................................	21	4	1.75	7	5	0	0	0	1	1
.................................................................AGAGAGTGTAGGAGCTAATGCGCGTG...........................................	26	4	1.25	5	5	0	0	0	0	0
..............CATAGGTTTCAACTCATCCATACCC...............................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............ATAGGTTTCAACTCATCCATACC................................................................................................	23	1	1.00	1	0	0	0	0	1	0
..............CATAGGTTTCAACTCATCCATACC................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..............CATAGGTTTCAACTCATCCATA..................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.............ACATAGGTTTCAACTCATCCAT...................................................................................................	22	1	1.00	1	1	0	0	0	0	0
....................TTTCAACTCATCCATACCCTCTAT..........................................................................................	24	1	1.00	1	1	0	0	0	0	0
............GACATAGGTTTCAACTCATCCATAC.................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................AGAGAGTGTAGGAGCTAATGCGCG.............................................	24	4	0.50	2	2	0	0	0	0	0
.............ACATAGGTTTCAACTCATCC.....................................................................................................	20	3	0.33	1	1	0	0	0	0	0
..............CATAGGTTTCAACTCATCC.....................................................................................................	19	3	0.33	1	1	0	0	0	0	0
...............................................GTGGATAAAATTTTTTGAAGAGAGTGT............................................................	27	4	0.25	1	0	0	0	0	0	1
.................................................................AGAGAGTGTAGGAGCTAATGCGCGTGC..........................................	27	4	0.25	1	1	0	0	0	0	0
...............................................................GAAGAGAGTGTAGGAGCTAATGCGCG.............................................	26	4	0.25	1	1	0	0	0	0	0
.....................................................................AGTGTAGGAGCTAATGCGCGT............................................	21	4	0.25	1	1	0	0	0	0	0
.....................................................................AGTGTAGGAGCTAATGCGCGTGC..........................................	23	4	0.25	1	1	0	0	0	0	0
.................................................................AGAGAGTGTAGGAGCTAATGCGCGT............................................	25	4	0.25	1	1	0	0	0	0	0
..................................................................GAGAGTGTAGGAGCTAATGCGC..............................................	22	4	0.25	1	1	0	0	0	0	0
..................................................................GAGAGTGTAGGAGCTAATGCGCGTG...........................................	25	4	0.25	1	1	0	0	0	0	0
............................................................................................TAAATGCGCACATCATCAGGAGCCT.................	25	5	0.20	1	1	0	0	0	0	0
.........................................................................................TGCTAAATGCGCACATCATCAGGAGCC..................	27	5	0.20	1	1	0	0	0	0	0

droRho1

TTTATCTATT----------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dmo_267

scaffold_4844:3462-3537 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-13.7	-13.6	-13.6