ID:

dmo_2615

 Coordinate:

scaffold_6838:14008-14158 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.3 -8.2 -7.9

Flybase annnotation

exon [dmoj_GLEANR_7123:2]; CDS [Dmoj\GI21910-cds]; intron [Dmoj\GI21910-in]

Repeatable elements

NameClassFamilyStrand
Gypsy6-I_Dmoj-intLTRGypsy+
Gypsy6-I_Dmoj-intLTRGypsy+
mature
  1. scaffold_374:1860-1882 +
  2. scaffold_409:466-488 +
  3. scaffold_1834:138-160 +
  4. scaffold_1989:1150-1172 +
  5. scaffold_2252:1223-1245 +
  6. scaffold_3200:216-238 +
  7. scaffold_3869:892-914 +
  8. scaffold_4142:3777-3799 +
  9. scaffold_4157:3600-3622 -
  10. scaffold_4626:1734-1756 +
  11. scaffold_5071:30-52 +
  12. scaffold_5776:1272-1294 +
  13. scaffold_5930:7098-7120 +
  14. scaffold_6114:10625-10647 -
  15. scaffold_6296:889-911 -
  16. scaffold_6482:213823-213845 +
  17. scaffold_6496:26513042-26513064 +
  18. scaffold_6498:2686106-2686128 -
  19. scaffold_6540:80487-80509 +
  20. dmo_2615  scaffold_6838:14060-14082 +
  21. scaffold_1875:3233-3255 -
  22. scaffold_6482:392217-392239 -
star
  1. scaffold_3939:4639-4661 +
  2. scaffold_4066:3393-3415 +
  3. scaffold_4067:3887-3909 -
  4. scaffold_4249:336-358 +
  5. scaffold_4293:6840-6862 -
  6. scaffold_6347:7728-7750 -
  7. scaffold_6460:134760-134782 -
  8. scaffold_6470:23229-23251 -
  9. scaffold_6500:30919608-30919630 +
  10. scaffold_6540:605825-605847 +
  11. scaffold_6541:932041-932063 +
  12. scaffold_6541:1779861-1779883 -
  13. dmo_2615  scaffold_6838:14102-14124 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAAATAAATAAATATATATACAAATAAAAAAAAAATAAGAAAAAAAAATAAGATTTGAATAAACTGAGGGGAATAAATAAACATTTGGAATGGAAGACGCCGAATATCATAACCCAGGATTGAGCGTCGGGTGGATTTACCAGCGGTGCAAGGAGGAGCTAATCACAAATTGTGATTCACAATAGCTCGGATTTACGAAAGGTTCAAGAACAAGGTCCCGTTCAGACAGAGTTCCTGAGACTGAGGGTGCC
******************************************************************************************************...............((((.(((.((...((.(((.......))).))....)).)))))))...************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
....................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGTCC................................. 22 0 20 1.55 31 15 16 0 0
....................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGTCCC................................ 23 0 20 1.20 24 24 0 0 0
....................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGTCCCG............................... 24 0 20 1.10 22 22 0 0 0
....................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGTCCCGT.............................. 25 0 20 0.80 16 15 1 0 0
......................................................................................................AATATCATAACCCAGGATTGAGC.............................................................................................................................. 23 0 20 0.80 16 10 6 0 0
..........................................................................................................TCATAACCCAGGATTGAGCGTCGGG........................................................................................................................ 25 0 20 0.45 9 6 0 3 0
..........................................................................................................TCATAACCCAGGATTGAGCGTCG.......................................................................................................................... 23 0 20 0.35 7 6 0 1 0
..........................................................................................................TCATAACCCAGGATTGAGCGTCGG......................................................................................................................... 24 0 20 0.35 7 7 0 0 0
.....................................................................................................GAATATCATAACCCAGGATTGAGC.............................................................................................................................. 24 0 20 0.30 6 5 1 0 0
..........................................................................................................................................................................................TCAGATTTACGAAACGTT............................................... 18 2 20 0.30 6 6 0 0 0
....................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGTC.................................. 21 0 20 0.25 5 1 3 1 0
......................................................................................................AATATCATAACCCAGGATTGAGCGT............................................................................................................................ 25 0 20 0.20 4 4 0 0 0
................................................................................................................................................GGTGCAAGGAGGAGCTAATCACA.................................................................................... 23 0 13 0.15 2 0 0 2 0
.....................................................................................................................................................................................................AAAGGTTCAAGAACAAGGTCCCGT.............................. 24 0 20 0.15 3 3 0 0 0
..........................................................................................................TCATAACCCAGGATTGAGCGTC........................................................................................................................... 22 0 20 0.15 3 3 0 0 0
......................................................................................................AATATCATAACCCAGGATTGAGCGTC........................................................................................................................... 26 0 20 0.15 3 2 0 1 0
........................................................GAATAAACTGAGGGGAATAAATAAAC......................................................................................................................................................................... 26 0 7 0.14 1 1 0 0 0
....................................................ATTTGAATAAACTGAGGGGAAT................................................................................................................................................................................. 22 0 8 0.13 1 0 1 0 0
...................................................................GGGGAATAAATAAACATTTGGAATGGA............................................................................................................................................................. 27 0 9 0.11 1 1 0 0 0
.........................................................AATAAACTGAGGGGAATAAATAAACATT...................................................................................................................................................................... 28 0 9 0.11 1 1 0 0 0
........TAACTCTATATACAATTAAAAAAAAA......................................................................................................................................................................................................................... 26 3 9 0.11 1 1 0 0 0
....................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGTCCCGTTC............................ 27 0 20 0.10 2 0 2 0 0
....................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGTCCCGTT............................. 26 0 20 0.10 2 2 0 0 0
...........................................................................................................CATAACCCAGGATTGAGCGTCGGG........................................................................................................................ 24 0 20 0.10 2 2 0 0 0
......................................................................................................AATATCATAACCCAGGATTGAGCG............................................................................................................................. 24 0 20 0.10 2 2 0 0 0
.........................................................AATAAACTGAGGGGAATAAATAA........................................................................................................................................................................... 23 0 10 0.10 1 1 0 0 0
....................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGTCCCGC.............................. 25 1 20 0.10 2 0 2 0 0
...............................................................................................................................................................TGATCACAAATTGGGAATC......................................................................... 19 3 20 0.05 1 0 0 1 0
...........................................................................................................CATAACCCAGGATTGAGCGTCGG......................................................................................................................... 23 0 20 0.05 1 1 0 0 0
......................................................................................................AACATCATAACCCAGGATTGAGC.............................................................................................................................. 23 1 20 0.05 1 0 1 0 0
....................................................................................................................................................................................................GAAAGGTTCAAGAACAAGTTCCCGT.............................. 25 1 20 0.05 1 1 0 0 0
..........................................................................................................TCATAACCCAGGATTGAGCGTCGGGTGG..................................................................................................................... 28 0 20 0.05 1 1 0 0 0
...................................................................................................CCGAATATCATAACCCAGGATTGAGC.............................................................................................................................. 26 0 20 0.05 1 0 1 0 0
...........................................................................................................CATAACCCAGGATTGAGCGTCGGGTGG..................................................................................................................... 27 0 20 0.05 1 1 0 0 0
..........................................................................................................TCATAACCCAGGATTGAGCGTCGGGT....................................................................................................................... 26 0 20 0.05 1 0 0 1 0
....................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGCCCC................................ 23 1 20 0.05 1 0 1 0 0
..........................................................................................................TCATAACCCAGGATTGAGCGTCGGGTG...................................................................................................................... 27 0 20 0.05 1 1 0 0 0
....................................................................................................................................................................................................GAATGGTTCAAGAAAAAGGTCCC................................ 23 2 20 0.05 1 0 1 0 0
....................................................................................................................................................................................................GAAAGGTTCAAGAACAAGG.................................... 19 0 20 0.05 1 0 0 1 0
........................................................................................................................................................................................................GGTTCAAGAACAAGGTCCCGTTCAT.......................... 25 1 20 0.05 1 1 0 0 0
........................................................................................................................................................................................................GGTTCAAGAACAAAGTCCCGTTC............................ 23 1 20 0.05 1 1 0 0 0
.....................................................................................................GAATATCATAACCCAGGATTGAGCGTC........................................................................................................................... 27 0 20 0.05 1 0 0 1 0
......................................................................................................AATATCATAACCCAGGATTGAGCGGC........................................................................................................................... 26 1 20 0.05 1 0 1 0 0
....................................................................................................................................................................................................GAAAGGTTCAAGAACAAGTTCCC................................ 23 1 20 0.05 1 0 1 0 0
......................................................................................................AATATCATAACCCAGGATAGAGC.............................................................................................................................. 23 1 20 0.05 1 0 0 0 1
......................................................................................................AATATCATAACCCAGGATTGAGCGTCGG......................................................................................................................... 28 0 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................................AAAGGTTCAAGAACAAGGTCC................................. 21 0 20 0.05 1 1 0 0 0
...................................................................................................................................................................................................CGAAAGGTTCAAGAACAAGGTCC................................. 23 0 20 0.05 1 1 0 0 0
.....................................................................................................GAATATCATAACCCAGGATTGAG............................................................................................................................... 23 0 20 0.05 1 1 0 0 0
....................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGT................................... 20 0 20 0.05 1 1 0 0 0
...............................................................................................................ACCCAGGATTGAGCGTCGGGTGG..................................................................................................................... 23 0 20 0.05 1 1 0 0 0
....................................................................................................................................................................................................GGAAGGTTCAAGAACAAGGTCCC................................ 23 1 20 0.05 1 0 1 0 0
.....................................................................................................GAATATCATAACCCAGGATTGAGCGT............................................................................................................................ 26 0 20 0.05 1 1 0 0 0
......................................................................................................AATATCATAACCCAGGATTGAGCGTCG.......................................................................................................................... 27 0 20 0.05 1 0 0 1 0
.....................................................ATTGAAGAAACTAAGGGGA................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

TTTTATTTATTTATATATATGTTTATTTTTTTTTTATTCTTTTTTTTTATTCTAAACTTATTTGACTCCCCTTATTTATTTGTAAACCTTACCTTCTGCGGCTTATAGTATTGGGTCCTAACTCGCAGCCCACCTAAATGGTCGCCACGTTCCTCCTCGATTAGTGTTTAACACTAAGTGTTATCGAGCCTAAATGCTTTCCAAGTTCTTGTTCCAGGGCAAGTCTGTCTCAAGGACTCTGACTCCCACGG
************************************************************************************...............((((.(((.((...((.(((.......))).))....)).)))))))...****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
...........................................................................................CCTTCTGCGGCTTATAGTATTGGGT....................................................................................................................................... 25 0 4 0.75 3 0 0 3 0
..............................................................................................................................................CGCCACGTTCCTCCTCGATTAGTGTT................................................................................... 26 0 10 0.60 6 4 0 1 1
...........................................................................................................................................GGTCGCCACGTTCCTCCTCGATTAG....................................................................................... 25 0 11 0.55 6 4 2 0 0
................................................................................................................GGGTCCTAACTCGCAGCCCACCTAATC................................................................................................................ 27 2 3 0.33 1 1 0 0 0
....................................................................................AACCTTACCTTCTGCGGCTTATAGTATT........................................................................................................................................... 28 0 10 0.20 2 2 0 0 0
......................................................................................CCTTACCTTCTGCGGCTTATAGTATT........................................................................................................................................... 26 0 10 0.20 2 2 0 0 0
...............................................................................................................................................GCCACGTTCCTCCTCGATTAGTGTT................................................................................... 25 0 11 0.18 2 1 1 0 0
..............................................................................................................................................CGCCACGTTCCTCCTCGATTAGTGT.................................................................................... 25 0 11 0.18 2 2 0 0 0
.................................................................................................................................................CACGTTCCTCCTCGATTAGTGTT................................................................................... 23 0 12 0.17 2 2 0 0 0
........................................................................................TTACCTTCTGCGGCTTATAGTATT........................................................................................................................................... 24 0 13 0.15 2 2 0 0 0
.................................................................................................GCGGCTTATAGTATTGGGTCCTAACT................................................................................................................................ 26 0 20 0.15 3 3 0 0 0
......................................................................................CCTTACCTTCTGCGGCTTATAGTAGT........................................................................................................................................... 26 1 10 0.10 1 0 1 0 0
.......................................................................................CTTACCTTCTGCGCCTTATAGTATT........................................................................................................................................... 25 1 10 0.10 1 1 0 0 0
...................................................................................AAACCTTACCTTCTGCGGCTTATAGTATT........................................................................................................................................... 29 0 10 0.10 1 0 1 0 0
..................................................................................................................................................................................................................GTTCCTAGGCAACTCTGTCT..................... 20 3 10 0.10 1 1 0 0 0
.....................................................................................ACCTTACCTTCTGCGGCTTATAGTATT........................................................................................................................................... 27 0 10 0.10 1 1 0 0 0
...................................................................................AAACCTTACCTTCTGCGGCTTATAGTAT............................................................................................................................................ 28 0 10 0.10 1 1 0 0 0
............................................................................................................................................GTCGCCACGTTCCTCCTCGATTAG....................................................................................... 24 0 11 0.09 1 1 0 0 0
...........................................................................................................................................GGTCGCCACGTTCCTCCTCGATTAGT...................................................................................... 26 0 11 0.09 1 1 0 0 0
..........................................................................................................................................TGGTCGCCACGTTCCTCCTCGATTA........................................................................................ 25 0 11 0.09 1 1 0 0 0
...........................................................................................................................................GGTCGCCACGTTCCTCCTCGATTAGTG..................................................................................... 27 0 11 0.09 1 1 0 0 0
...............................................................................................................................................GCCACTTTCCTCCCCGATTAGTGTT................................................................................... 25 2 11 0.09 1 0 1 0 0
...........................................................................................................................................GGTCGCCACGTTCCTCCTCGATTA........................................................................................ 24 0 11 0.09 1 1 0 0 0
.................................................................................................................................................CACGTTCCTCCTAGATTAGTCTT................................................................................... 23 2 12 0.08 1 0 1 0 0
................................................................................................................................................CCACGTTCCTCCTCGATTAGCGTT................................................................................... 24 1 12 0.08 1 0 1 0 0
................................................................................................................................................CCACGTTCCTCCTCGATTAGTGTTC.................................................................................. 25 1 12 0.08 1 0 1 0 0
........................................................................................TTACCTTCTGCGGCTTATAGTACT........................................................................................................................................... 24 1 13 0.08 1 0 1 0 0
.................................................................................................................................................CACGTTCCTCCTCGATTAGTGT.................................................................................... 22 0 13 0.08 1 0 1 0 0
..........................................................................................................................TCGCAGCCCACCTAAATGGTCGCCAC....................................................................................................... 26 0 15 0.07 1 1 0 0 0
.............................................................................................................................CAGCCCACCTAAATGGTCGCCACGTTCCT................................................................................................. 29 0 15 0.07 1 0 1 0 0
..........................................................................................................................TCGCAGCCCACCTAAATGGTCGCCA........................................................................................................ 25 0 15 0.07 1 0 1 0 0
.............................................................................................TTCTGCGGCTTATAGTATTGGG........................................................................................................................................ 22 0 16 0.06 1 1 0 0 0
...........................................................................................CCTTCTGCGGCTTATAGTATTGGG........................................................................................................................................ 24 0 16 0.06 1 1 0 0 0
................................................................................................................................CCCACCTAAATGGTCGCCACGTTCC.................................................................................................. 25 0 17 0.06 1 1 0 0 0
................................................................................................................................CCCACCTAAATGGTCGCCACGTTCCT................................................................................................. 26 0 17 0.06 1 1 0 0 0
....................................................................................................................CCTAACTCGCAGCCCACC..................................................................................................................... 18 0 20 0.05 1 1 0 0 0
........................................................................................................................................................................................................................GGGCGAGTCCGTATCAAG................. 18 3 20 0.05 1 1 0 0 0
...........................................................................................CCTTCTGCTGCTTATAGTAT............................................................................................................................................ 20 1 20 0.05 1 0 1 0 0
...................................................................................................GGCTTATAGTATTGGGTCCTAACT................................................................................................................................ 24 0 20 0.05 1 1 0 0 0
..................................................................................................................GTCCTAACTCGCAGCCCACCT.................................................................................................................... 21 0 20 0.05 1 1 0 0 0
............................................................................................................CTCTGGGTCCTAACTCGCAGCCCACCT.................................................................................................................... 27 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6838:13958-14208 + dmo_2615 AAAA-TAAATAAATAT-ATATACAAATAAAAAAAAAA------------T-A---AGAAAAAAAAATA----------------------------------------------------------------AGAT-----T----------------------------------------------TGAATAAACTGAGGGGAATAAATAAACATTTGGAATGGAAGACGCCGAATATCATAACCCAGGATTGA---------------------------------------GCGTCGGGTGGATTT---------------------A-----------CCAGCGGTGCAA-------------------GGAGGAGCTAAT------------------------------------------------------CACAAATTGTGATTCACAATAGCTCGGATTTACGAAAGGTTCAAGAACAAGGTCCCGTTCAGA--------------------------------CAGAGTTCCTGAGACTGAGGGTGCC
droVir3 scaffold_12945:93078-93354 + ATAA-TAATCAAATAT-GTATTAAAATATATACATCGGAAAAAAATCCATGAAGA----AAC----------------AGAACCCTGAAAATAATAACGATAATAATCAGTGAACTATTTTGTTTTCTTTTTT-----------------------C--------------------------------TGGTGGAGTGAGCGGA--------AAATCTAAAATGGAATCAGGCGAGTGCTAAAACCCGCGGGTAG---------------------------------------GCGTGCGTTGGACCC---------------------A-----------CCAGCGACGCAA-------------------CGAGGAGCAGGTGGCCATCGCCCAGGAGTTCGGG-----------------CTAGAAAGG-----------------------------------------------------GAAGGGCGCGT---GG--------------------------------GAGAACTGCGTAG---GCGGCTGTC
droGri2 scaffold_14624:4176714-4176845 + AAAT-TAAAGTAAATTTATAAAATAAAA----ATAA------------ATAAATA----ATATACAAA----------------------------------------------------------------TATAAATATTTAAATAAGCGAATTTGGTTGAAGTAAAACCATAA---------------------------------------------AT------------------------------------------TTAATTGGCA-----------------------------------CAAGACAAAA-AATATAA-----AAGTTTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------TT
droWil2 scf2_1100000004967:1083142-1083352 + CAAA-AATATATATAA-ATTTCCAAATAAAAAAAAAA------------A-A---ACAAATTTTTAAG-----------------------------------------------------CT----------GAATAA-----AATATATAT--AT-------------------------------TTGTTGATTAAAATGAATACGTTAGACAATTATTT------------------------------------------TAGGAAGATA-----------------------------------G---------------------------------------------------TAAATA-----GGA-----ATCCCAGCATTGCAG--CAGATTCAGTTGAGGTTTTTAGAAGGGATAATATTAACACAGCACAAAGTTAAACTTAGTACAGATCA-----------------------------------GA-------------------------------------------------------TT
dp5 XL_group1a:39951-40060 - TAAA-GAAATGAAATC-GCAAGCAAATAAGAACACAC------------G-A---AAAAGAAGAAAAA----------------------------------------------------------------AGAC-----A----------------------------------------------CAAGGAAA---------CCGAATGAAAACTTCGGA---------------------------------TATGGAAGC---------ATTTCATACCCT----------------------------------------------------------------CGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------GA
droPer2 scaffold_11:2681679-2681786 + GATA-TAAATAGAGAT-AAAGAGAAATAGAGATAGAG------------T-T---AGAGATAGCGAAC----------AGA-----------------------------------------------------------------------------------------------------------------------AT-----AAAAAAAAAGATAAAGACGACGACGACGCATTTAATTG--------------------------------------TTT-----------------------------------------------T------GGATTGT----------------------------------------------------------------------------------------------------------------------------------------------------------TC-------------------------------------------------------GT
droAna3 scaffold_9225:377-497 - AAAA-TAAAAAAAAAT-ATATGAAAAAAATATGAAAA------------G--A--A---AAAAAAATATT----------------------------------------------------------------CC-----T----------------------------------------------TTACTATGCACAAAGAAAATAATAGAAAAATGGTATATACAC--------------------------------------------GACC--------GAAG-----------------------------------------------------------------------------------AAC-----GACCCAAC-------------------------------------------------------------------------ATCA-----------------------------------AG-------------------------------------------------------TG
droBip1 scf7180000393161:17944-18130 - ATAG-CAGAGAAATGG-GAAAGAAAAAC----GTGA---------------------------------------------------------------------------------------------------T-----C----------------------------------------------TACACGCTCAAAAAGGAGGAACTGAGCGAGGTGTGCAGAGAACTCGGTCTA----------CCACCAG---------------------------------------TGGCGAAGTGGGTTG---------------------A-----------CGAGTCCAAGGA-------------------CGAGGAAGTACTGGCGTTGACACACGGACTCGAG-----------------------------------------------------------------GAAAGGTTTGGGCAGAGATCCACCCCCAGG--------------------------------CAG--------------------AG
droKik1 scf7180000302643:237313-237495 - TAAT-AAAGCAAACAA-AATAAAAAAGAAAACAAACA------------G--A--AA--CAGAAACCATTAA---------------------------------------------------------------------------------------------------------------------GAAGTAACAAAAGACCATAAAAAAGCGTTAAAAATGTG-------------------------------------C---------AAAT--------ATGTAATGTGCGTGGTGAGACAAC---------------------A-----------ACAACATCGCAA-------------------GAAA-----CTACAGCC-------------------------------------------------CCAACACCATAATTAACAATTGCACGAGTGAGCGA--------------------------GA-------------------------------------------------------AG
droFic1 scf7180000453855:119837-119980 - AAAA-TAAATACATAA-ATATAACAAAAAAAAAAGAA------------A-A-------AAAATAATACA----------------------------------------------------T----------AAATAC-----AATATATCTTTAC------------------------------------------A----------------------------------------------------------------------------------TCTG------------GGGGGAGATGAA---------ATCCATTAGCCGC-----------CAAGTCTCAAGAGCAATGATAAA-GGGCGCAGC-----AGCGGCG-----------------------------------------------------------------------------------------------------------------CAG--------------------------------AA--------------------AG
droEle1 scf7180000491276:2483-2584 - AAAT-A-AATAGATTT-AAATAAAAATGAAATGAAAA------------T-----------TCAAAAA----------------------------------------------------------------CAAAAGTTTTTGA------------------------------------------------------------AAAAATAAAGAATTCTTA---------------------------------AATAGATAC---------ATGT--------GAAT-----------------------------------------------------------------------------------AGC-----AACCG------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------TA
droRho1 scf7180000776853:10550-10683 - AAAA-TAAATAAATAA-ATAAAAAAAAA----ATAA------------ATATAAA----ATATGAATA----------------------------------------------------------------CTAATGCACTCGG-----------------------------------------------------------ATTAGA------------------------------------------------------------------------------------------------------------------------------------ATTACTC-------------TTGATA-----GGG-----AACCCAACTTT---------------------------------------------CAGAACAGGGTATGAAATGGTGAGGGGCG-----------------------------------GG----------------------CTTTC----CAAC--------------------GG
droBia1 scf7180000301450:19881-20040 - TAAA-AAAATAAATAT-ATTCATAAATATAAGAATAT------------A-A---AAG-GGTAAAACA--------------------------------------------------------------------------------------------------------ATCTTTTTGATTGGCTTTAACATTTAAAATTAAATAAAA-------AATAAACGACAA----------------------------------------------------------------------------------------AA-ATTATAG-TGTCCAGTTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTCCAATCGATTTGGAAAAGGGTCATTAAGAAATT--------------------AA
droTak1 scf7180000413952:23178-23300 - TATA-AAGACGTATAA-ATATACAAAAAAATGTGATA------------A--A--AT--TAAAGAACATTATGAAAACAAACACCT------------------------------------------------------------------------------------------------------GTGG----------------------------------AAAACACCCAATTTAAAATAAAAAAATT--------------------ATTTAACGCCTG----------------------------------------------------------------TGCGA-------------------GGAC---------------------------------------------------------------------------------------------------------------------------CA-------------------------------------------------------GC
droEug1 scf7180000409569:8451-8558 - AAAT-AAA-AAAATAA-ATAAATAAATAAAAAAAAT------------ATGAAAA----ATATGAATT----------------------------------------------------------------CT-------------------------------------------------------------GCAGAGTGGATTAGA------------------------------------------------------------------------------------------------------------------------------------ACCACTC-------------TTGATA-----AGG-----GACCAAACTC-------------------------------------------------CCGATATAA----------------------------------------------------TAT--------------------------------CC--------------------TA
dm3 chr2RHet:1883101-1883186 + ATAA-TAAATAAAAGG-CTACACAAAAAAAAAAAAAA------------A--A--AA--AAACCAATATT----------------------------------------------------------------TT-----A----------------------------------------------TTATTTTA--------AACAAATAA---------------------------------------------------------------------------------------------------------------------------------ATTATTT-------------TTAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG--------------------AA
droSim2 node_25741:104-224 - AACA-TAT--AAATAA-ATATGAAAATATAAAATGAA-----------ATATA----------AAATAT*--------------------------------------------------------CTTATAACAA-----C----------------------------------------------CCAATATGGGTGGTTGATAAAAA-------AGGAACCGACGAGGCCGGCAATCAAAA--------------------------------------------------------------------------------TAG-----ACG------ATTGG----------------------------------------------------------------------------------------------------------------------------------------------------------TC-------------------------------------------------------AT
droSec2 scaffold_6:1677399-1677532 + AGTTTTAAATAAATAA-ATATATAAAAATAAAAATAA-----------ATAAAAA----TTAAAAATA----------------------------------------------------------------CAAATAA-----AATAAACTATTAC------------------------------------------AGCTAAGGCAGTAAGCAGTTGTAA------------------------------------------TAAGTAGACG-----------------------------------ATGTACAGGG-TACTCT------T------AAG-----------------------------------------------------------------------------------------------------------------------CCGA-----------------------------------GA-------------------------------------------------------TT
droYak3 3L:19318365-19318480 + ATTAGTTAATATATAA-ACAAAAAAATA----GTAT------------ATAAAAA----ATATTTATA----------------------------------------------------------------AATT-----A----------------------------------------------TTATTATTTAAAATTAAACGAACAAAAACTTATAATGTAAAG------------------------------------------AAC-----------------------------------A--------------T-----------------------------------------------GAA-----ATCACAA-----------------------------------------------------------------------------------------------------------------CAT--------------------------------TG--------------------AG
droEre2 scaffold_4690:18234597-18234711 + AAAT-AATATAAGTAT-GTATAATAATAAAATAATAT------------T-A---ATAGAATTATATA-----------------------------------------------------AT----------AAA----------------------------------------------------------------ATAATAATAATAATATATTATTA------------------------------------------TTTATAGACA-----------------------------------CAATATCGAG-G----------------------------------------------------------------------------------------------------------------------------------ATTACAAATATT------------------------------------------------------------------------AA--------------------AA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AAAA-TAAATAAATAT-ATATACAAATAAAAAAAAAA------------T-A---AGAAAAAAAAATA----------------------------------------------------------------AGAT-----T----------------------------------------------TGAATAAACTGAGGGGAATAAATAAACATTTGGAATGGAAGACGCCGAATATCATAACCCAGGATTGA---------------------------------------GCGTCGGGTGGATTT---------------------A-----------CCAGCGGTGCAA-------------------GGAGGAGCTAAT------------------------------------------------------CACAAATTGTGATTCACAATAGCTCGGATTTACGAAAGGTTCAAGAACAAGGTCCCGTTCAGA--------------------------------CAGAGTTCCTGAGACTGAGGGTGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGTCC.................................................................22201.553115000160
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGTCCC................................................................23201.20242400000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGTCCCG...............................................................24201.10222200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGTCCCGT..............................................................25200.80161500010
...........................................................................................................................................................................................................................................AATATCATAACCCAGGATTGA---------------------------------------GC.......................................................................................................................................................................................................................................................................23200.80161000060
...............................................................................................................................................................................................................................................TCATAACCCAGGATTGA---------------------------------------GCGTCGGG.................................................................................................................................................................................................................................................................25200.459600003
...............................................................................................................................................................................................................................................TCATAACCCAGGATTGA---------------------------------------GCGTCG...................................................................................................................................................................................................................................................................23200.357600001
...............................................................................................................................................................................................................................................TCATAACCCAGGATTGA---------------------------------------GCGTCGG..................................................................................................................................................................................................................................................................24200.357700000
..........................................................................................................................................................................................................................................GAATATCATAACCCAGGATTGA---------------------------------------GC.......................................................................................................................................................................................................................................................................24200.306500010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGTC..................................................................21200.255100031
...........................................................................................................................................................................................................................................AATATCATAACCCAGGATTGA---------------------------------------GCGT.....................................................................................................................................................................................................................................................................25200.204400000
............................................................................................................................................................................................................................................................................................................................................................GGTGCAA-------------------GGAGGAGCTAAT------------------------------------------------------CACA....................................................................................................................23130.152000002
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGTTCAAGAACAAGGTCCCGT..............................................................24200.153300000
...............................................................................................................................................................................................................................................TCATAACCCAGGATTGA---------------------------------------GCGTC....................................................................................................................................................................................................................................................................22200.153300000
...........................................................................................................................................................................................................................................AATATCATAACCCAGGATTGA---------------------------------------GCGTC....................................................................................................................................................................................................................................................................26200.153200001
.............................................................................................................................................................................................GAATAAACTGAGGGGAATAAATAAAC.........................................................................................................................................................................................................................................................................................................................................................2670.141100000
......................................................................................................................................AT-----T----------------------------------------------TGAATAAACTGAGGGGAAT.................................................................................................................................................................................................................................................................................................................................................................2280.131000010
........................................................................................................................................................................................................GGGGAATAAATAAACATTTGGAATGGA.............................................................................................................................................................................................................................................................................................................................................2790.111100000
..............................................................................................................................................................................................AATAAACTGAGGGGAATAAATAAACATT......................................................................................................................................................................................................................................................................................................................................................2890.111100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGTCCCGTTC............................................................27200.102000020
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGTCCCGTT.............................................................26200.102200000
................................................................................................................................................................................................................................................CATAACCCAGGATTGA---------------------------------------GCGTCGGG.................................................................................................................................................................................................................................................................24200.102200000
...........................................................................................................................................................................................................................................AATATCATAACCCAGGATTGA---------------------------------------GCG......................................................................................................................................................................................................................................................................24200.102200000
..............................................................................................................................................................................................AATAAACTGAGGGGAATAAATAA...........................................................................................................................................................................................................................................................................................................................................................23100.101100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGTCCCGC..............................................................25200.102000020
................................................................................................................................................................................................................................................CATAACCCAGGATTGA---------------------------------------GCGTCGG..................................................................................................................................................................................................................................................................23200.051100000
...............................................................................................................................................................................................................................................TCATAACCCAGGATTGA---------------------------------------GCGTCGGGTGG..............................................................................................................................................................................................................................................................28200.051100000
........................................................................................................................................................................................................................................CCGAATATCATAACCCAGGATTGA---------------------------------------GC.......................................................................................................................................................................................................................................................................26200.051000010
................................................................................................................................................................................................................................................CATAACCCAGGATTGA---------------------------------------GCGTCGGGTGG..............................................................................................................................................................................................................................................................27200.051100000
...............................................................................................................................................................................................................................................TCATAACCCAGGATTGA---------------------------------------GCGTCGGGT................................................................................................................................................................................................................................................................26200.051000001
...............................................................................................................................................................................................................................................TCATAACCCAGGATTGA---------------------------------------GCGTCGGGTG...............................................................................................................................................................................................................................................................27200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTTCAAGAACAAGG....................................................................19200.051000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAAGAACAAGGTCCCGTTCAT..........................................................25200.051100000
..........................................................................................................................................................................................................................................GAATATCATAACCCAGGATTGA---------------------------------------GCGTC....................................................................................................................................................................................................................................................................27200.051000001
...........................................................................................................................................................................................................................................AATATCATAACCCAGGATTGA---------------------------------------GCGTCGG..................................................................................................................................................................................................................................................................28200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGTTCAAGAACAAGGTCC.................................................................21200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAAGGTTCAAGAACAAGGTCC.................................................................23200.051100000
..........................................................................................................................................................................................................................................GAATATCATAACCCAGGATTGA---------------------------------------G........................................................................................................................................................................................................................................................................23200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTTCAAGAACAAGGT...................................................................20200.051100000
....................................................................................................................................................................................................................................................ACCCAGGATTGA---------------------------------------GCGTCGGGTGG..............................................................................................................................................................................................................................................................23200.051100000
..........................................................................................................................................................................................................................................GAATATCATAACCCAGGATTGA---------------------------------------GCGT.....................................................................................................................................................................................................................................................................26200.051100000
...........................................................................................................................................................................................................................................AATATCATAACCCAGGATTGA---------------------------------------GCGTCG...................................................................................................................................................................................................................................................................27200.051000001
droVir3
ATAA-TAATCAAATAT-GTATTAAAATATATACATCGGAAAAAAATCCATGAAGA----AAC----------------AGAACCCTGAAAATAATAACGATAATAATCAGTGAACTATTTTGTTTTCTTTTTT-----------------------C--------------------------------TGGTGGAGTGAGCGGA--------AAATCTAAAATGGAATCAGGCGAGTGCTAAAACCCGCGGGTAG---------------------------------------GCGTGCGTTGGACCC---------------------A-----------CCAGCGACGCAA-------------------CGAGGAGCAGGTGGCCATCGCCCAGGAGTTCGGG-----------------CTAGAAAGG-----------------------------------------------------GAAGGGCGCGT---GG--------------------------------GAGAACTGCGTAG---GCGGCTGTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................AACCCTGAAAATAATAACGATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003000000000000000000000001100100000000000000000000000000000000000
............................................................AC----------------AGAACCCTGAAAATAATAACGATAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000000000000000200000000000000000000000000
................................................................................AACCCTGAAAATAATAACGATAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000000000000000000000000011000000000000000000000000000000000000
.............................................................................................................................................................................................................................AATGGAATCAGGCGAGTGC................................................................................................................................................................................................................................................................................................................................1911.001000000000000100000000000000000000000000000000000000000000000000
....................................................................................CTGAAAATAATAACGATAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000010000000000000000000000000000000000000
................................................................................AACCCTGAAAATAATAACGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.002000000000000000000000001001000000000000000000000000000000000000
.................................................TGAAGA----AAC----------------AGAACCCTGAAAATAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2590.898000000000000000000000000050100001001000000000000000000000000000
................................................................................AACCCTGAAAATAATAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TAG---------------------------------------GCGTGCGTTGGACCC---------------------A-----------CCAGCG...................................................................................................................................................................................................................2520.501001000000000000000000000000000000000000000000000000000000000000
.................................................TGAAGA----AAC----------------AGAACCCTGAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23110.455000000002000000000000000002000000010000000000000000000000000000
................................................ATGAAGA----AAC----------------AGAACCCTGAAAATAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.383000000000000000000000000000200000000100000000000000000000000000
.................................................TGAAGA----AAC----------------AGAACCCTGAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.273100000000000000000000000010000000010000000000000000000000000000
...........................................................AAC----------------AGAACCCTGAAAATAATAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2390.222000000000000000000000000101000000000000000000000000000000000000
.................................................TGAAGA----AAC----------------AGAACCCTGAAAATAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2690.222000000000000000000000000020000000000000000000000000000000000000
................................................ATGAAGA----AAC----------------AGAACCCTGAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24100.202000000000010000000000000000000000000000000000000100000000000000
................................................ATGAAGA----AAC----------------AGAACCCTGAAAATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25100.202000100000000000000000000010000000000000000000000000000000000000
.................................................TGAAGA----AAC----------------AGAACCCTGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.182000000000000000000000000020000000000000000000000000000000000000
..................................................GAAGA----AAC----------------AGAACCCTGAAAATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23110.182000000000000000000000000100100000000000000000000000000000000000
................................................ATGAAGA----AAC----------------AGAACCCTGAAAATAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2760.171000000000000000000000000000000000000000010000000000000000000000
.................................................TGAAGA----AAC----------------AGAACCCTGAAAATAATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2770.141000000000000000000000000010000000000000000000000000000000000000
.................................................TGAAGA----AAC----------------AGAACCCTGAAAATAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2670.141000000001000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATCGCCCAGGAGTTCGG.........................................................................................................................................................22150.132000000000000000000000000000011000000000000000000000000000000000
...................................................AAGA----AAC----------------AGAACCCTGAAAATAATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.131000000000000000000000000000000001000000000000000000000000000000
...................................................AAGA----AAC----------------AGAACCCTGAAAATAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2480.131000000000000000000000000001000000000000000000000000000000000000
....................................................AGA----AAC----------------AGAACCCTGAAAATAATAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.131000000000000000000000000100000000000000000000000000000000000000
...........................................................AAC----------------AGAACCCTGAAAATAATAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2290.111000000000000000000000000100000000000000000000000000000000000000
............................................................AC----------------AGAACCCTGAAAATAATAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2290.111001000000000000000000000000000000000000000000000000000000000000
................................................ATGAAGA----AAC----------------AGAACCCTGAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23100.101000000000000000000000000000000000000100000000000000000000000000
..................................................GAAGA----AAC----------------AGAACCCTGAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.091000000000000000000000000001000000000000000000000000000000000000
.................................................TGAAGA----AAC----------------AGAACCCTGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.091000000000000000000000000000000000000001000000000000000000000000
...................................................AAGA----AAC----------------AGAACCCTGAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.081100000000000000000000000000000000000000000000000000000000000000
...................................................AAGA----AAC----------------AGAACCCTGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19120.081000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CCCAGGAGTTCGGG-----------------CTAGAATTA-----------------------------------------------------.........................................................................23130.081000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATCGCCCAGGAGTTCGGG-----------------CT.....................................................................................................................................26130.081000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATCGCCCAGGAGTTCGGG-----------------.......................................................................................................................................23150.071000000000100000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATCGCCCAGGAGTTCGGG-----------------C......................................................................................................................................24150.071000000010000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CGCCCAGGAGTTCGGG-----------------CTAG...................................................................................................................................20200.051000000100000000000000000000000000000000000000000000000000000000
droGri2
AAAT-TAAAGTAAATTTATAAAATAAAA----ATAA------------ATAAATA----ATATACAAA----------------------------------------------------------------TATAAATATTTAAATAAGCGAATTTGGTTGAAGTAAAACCATAA---------------------------------------------AT------------------------------------------TTAATTGGCA-----------------------------------CAAGACAAAA-AATATAA-----AAGTTTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------TTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CAAA-AATATATATAA-ATTTCCAAATAAAAAAAAAA------------A-A---ACAAATTTTTAAG-----------------------------------------------------CT----------GAATAA-----AATATATAT--AT-------------------------------TTGTTGATTAAAATGAATACGTTAGACAATTATTT------------------------------------------TAGGAAGATA-----------------------------------G---------------------------------------------------TAAATA-----GGA-----ATCCCAGCATTGCAG--CAGATTCAGTTGAGGTTTTTAGAAGGGATAATATTAACACAGCACAAAGTTAAACTTAGTACAGATCA-----------------------------------GA-------------------------------------------------------TTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................TAGGAAGATA-----------------------------------G---------------------------------------------------TAAATA-----GGA-----ATCC...............................................................................................................................................................................24200.05101000
..............................................................................................................................................................................................................................T------------------------------------------TAGGAAGATA-----------------------------------G---------------------------------------------------TAAATA-----GGA-----...................................................................................................................................................................................21200.05100100
...........................................................................................................................................................................................................................ATTT------------------------------------------TAGGAAGATA-----------------------------------G---------------------------------------------------TAAATA-----GGA-----...................................................................................................................................................................................24200.05100100
dp5
TAAA-GAAATGAAATC-GCAAGCAAATAAGAACACAC------------G-A---AAAAGAAGAAAAA----------------------------------------------------------------AGAC-----A----------------------------------------------CAAGGAAA---------CCGAATGAAAACTTCGGA---------------------------------TATGGAAGC---------ATTTCATACCCT----------------------------------------------------------------CGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------GASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GATA-TAAATAGAGAT-AAAGAGAAATAGAGATAGAG------------T-T---AGAGATAGCGAAC----------AGA-----------------------------------------------------------------------------------------------------------------------AT-----AAAAAAAAAGATAAAGACGACGACGACGCATTTAATTG--------------------------------------TTT-----------------------------------------------T------GGATTGT----------------------------------------------------------------------------------------------------------------------------------------------------------TC-------------------------------------------------------GTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AAAA-TAAAAAAAAAT-ATATGAAAAAAATATGAAAA------------G--A--A---AAAAAAATATT----------------------------------------------------------------CC-----T----------------------------------------------TTACTATGCACAAAGAAAATAATAGAAAAATGGTATATACAC--------------------------------------------GACC--------GAAG-----------------------------------------------------------------------------------AAC-----GACCCAAC-------------------------------------------------------------------------ATCA-----------------------------------AG-------------------------------------------------------TGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ATAG-CAGAGAAATGG-GAAAGAAAAAC----GTGA---------------------------------------------------------------------------------------------------T-----C----------------------------------------------TACACGCTCAAAAAGGAGGAACTGAGCGAGGTGTGCAGAGAACTCGGTCTA----------CCACCAG---------------------------------------TGGCGAAGTGGGTTG---------------------A-----------CGAGTCCAAGGA-------------------CGAGGAAGTACTGGCGTTGACACACGGACTCGAG-----------------------------------------------------------------GAAAGGTTTGGGCAGAGATCCACCCCCAGG--------------------------------CAG--------------------AGSizeHit CountTotal NormTotal
No Reads
droKik1
TAAT-AAAGCAAACAA-AATAAAAAAGAAAACAAACA------------G--A--AA--CAGAAACCATTAA---------------------------------------------------------------------------------------------------------------------GAAGTAACAAAAGACCATAAAAAAGCGTTAAAAATGTG-------------------------------------C---------AAAT--------ATGTAATGTGCGTGGTGAGACAAC---------------------A-----------ACAACATCGCAA-------------------GAAA-----CTACAGCC-------------------------------------------------CCAACACCATAATTAACAATTGCACGAGTGAGCGA--------------------------GA-------------------------------------------------------AGSizeHit CountTotal NormTotal
No Reads
droFic1
AAAA-TAAATACATAA-ATATAACAAAAAAAAAAGAA------------A-A-------AAAATAATACA----------------------------------------------------T----------AAATAC-----AATATATCTTTAC------------------------------------------A----------------------------------------------------------------------------------TCTG------------GGGGGAGATGAA---------ATCCATTAGCCGC-----------CAAGTCTCAAGAGCAATGATAAA-GGGCGCAGC-----AGCGGCG-----------------------------------------------------------------------------------------------------------------CAG--------------------------------AA--------------------AGSizeHit CountTotal NormTotal
No Reads
droEle1
AAAT-A-AATAGATTT-AAATAAAAATGAAATGAAAA------------T-----------TCAAAAA----------------------------------------------------------------CAAAAGTTTTTGA------------------------------------------------------------AAAAATAAAGAATTCTTA---------------------------------AATAGATAC---------ATGT--------GAAT-----------------------------------------------------------------------------------AGC-----AACCG------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------TASizeHit CountTotal NormTotal
No Reads
droRho1
AAAA-TAAATAAATAA-ATAAAAAAAAA----ATAA------------ATATAAA----ATATGAATA----------------------------------------------------------------CTAATGCACTCGG-----------------------------------------------------------ATTAGA------------------------------------------------------------------------------------------------------------------------------------ATTACTC-------------TTGATA-----GGG-----AACCCAACTTT---------------------------------------------CAGAACAGGGTATGAAATGGTGAGGGGCG-----------------------------------GG----------------------CTTTC----CAAC--------------------GGSizeHit CountTotal NormTotal
No Reads
droBia1
TAAA-AAAATAAATAT-ATTCATAAATATAAGAATAT------------A-A---AAG-GGTAAAACA--------------------------------------------------------------------------------------------------------ATCTTTTTGATTGGCTTTAACATTTAAAATTAAATAAAA-------AATAAACGACAA----------------------------------------------------------------------------------------AA-ATTATAG-TGTCCAGTTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTCCAATCGATTTGGAAAAGGGTCATTAAGAAATT--------------------AASizeHit CountTotal NormTotal
No Reads
droTak1
TATA-AAGACGTATAA-ATATACAAAAAAATGTGATA------------A--A--AT--TAAAGAACATTATGAAAACAAACACCT------------------------------------------------------------------------------------------------------GTGG----------------------------------AAAACACCCAATTTAAAATAAAAAAATT--------------------ATTTAACGCCTG----------------------------------------------------------------TGCGA-------------------GGAC---------------------------------------------------------------------------------------------------------------------------CA-------------------------------------------------------GCSizeHit CountTotal NormTotal
No Reads
droEug1
AAAT-AAA-AAAATAA-ATAAATAAATAAAAAAAAT------------ATGAAAA----ATATGAATT----------------------------------------------------------------CT-------------------------------------------------------------GCAGAGTGGATTAGA------------------------------------------------------------------------------------------------------------------------------------ACCACTC-------------TTGATA-----AGG-----GACCAAACTC-------------------------------------------------CCGATATAA----------------------------------------------------TAT--------------------------------CC--------------------TASizeHit CountTotal NormTotal
No Reads
dm3
ATAA-TAAATAAAAGG-CTACACAAAAAAAAAAAAAA------------A--A--AA--AAACCAATATT----------------------------------------------------------------TT-----A----------------------------------------------TTATTTTA--------AACAAATAA---------------------------------------------------------------------------------------------------------------------------------ATTATTT-------------TTAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG--------------------AASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................TATT----------------------------------------------------------------TT-----A----------------------------------------------TTATTTTA--------AACAAATAA---------------------------------------------------------------------------------------------------------------------------------AT........................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TTATTTTA--------AACAAATAA---------------------------------------------------------------------------------------------------------------------------------ATTATT....................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TAAATAAAAGG-CTACACAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TAAAAGG-CTACACAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.4590000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000001000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................AAAAAAAAAAAAA------------A--A--AA--AAACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000
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droSim2
AACA-TAT--AAATAA-ATATGAAAATATAAAATGAA-----------ATATA----------AAATAT*--------------------------------------------------------CTTATAACAA-----C----------------------------------------------CCAATATGGGTGGTTGATAAAAA-------AGGAACCGACGAGGCCGGCAATCAAAA--------------------------------------------------------------------------------TAG-----ACG------ATTGG----------------------------------------------------------------------------------------------------------------------------------------------------------TC-------------------------------------------------------ATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGAGGC.......................................................................................................................................................................................................................................................................................................................................2414157.93221100635001012583049267700000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGAGGCC......................................................................................................................................................................................................................................................................................................................................251488.2912360085100804418612165240000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGAGG........................................................................................................................................................................................................................................................................................................................................231453.8675400019005654109650100000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGAGGCCGGC...................................................................................................................................................................................................................................................................................................................................281038.0038000060022311121810010000
.........................................................................................................................................................................................................TTGATAAAAA-------AGGAACCGACGAGGC.......................................................................................................................................................................................................................................................................................................................................25139.5412400000071330317000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGAG.........................................................................................................................................................................................................................................................................................................................................22148.1411400020055029325000000
.............................................................................................................................................................................................................TAAAAA-------AGGAACCGACGAGGCCGGC...................................................................................................................................................................................................................................................................................................................................25106.406400010017528013000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGAGGCCGGCA..................................................................................................................................................................................................................................................................................................................................29105.20520000003001830010000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGAGGCCGG....................................................................................................................................................................................................................................................................................................................................27113.4538000600231503000000
.....................................................................................................................................................................................................GTGGTTGATAAAAA-------AGGAACCGACGA..........................................................................................................................................................................................................................................................................................................................................26123.0837000000027070030000
..................................................................................................................................TAACAA-----C----------------------------------------------CCAATATGGGTGGT......................................................................................................................................................................................................................................................................................................................................................................21132.9238000000001037000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGAGGCCG.....................................................................................................................................................................................................................................................................................................................................26122.5831000200302123000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGA..........................................................................................................................................................................................................................................................................................................................................21142.1430000100609014000000
.....................................................................................................................................................................................................................................AGGCCGGCAATCAAAA--------------------------------------------------------------------------------TA.........................................................................................................................................................................................................................................1852.0010000010000000000000
...........................................................................................................................................................................................................GATAAAAA-------AGGAACCGACGAGGCCGGC...................................................................................................................................................................................................................................................................................................................................27102.0020000000110603000000
.........................................................................................................................................................................................................TTGATAAAAA-------AGGAACCGACGAGG........................................................................................................................................................................................................................................................................................................................................24132.0026000000200501000000
...........................................................................................................................................................................................................GATAAAAA-------AGGAACCGACGAGGCC......................................................................................................................................................................................................................................................................................................................................24141.9327000600100515000000
......................................................................................................................................................................................................TGGTTGATAAAAA-------AGGAACCGACGAGGC.......................................................................................................................................................................................................................................................................................................................................28121.832200000068520010000
......................................................................................................................................AA-----C----------------------------------------------CCAATATGGGTGGTTGATAAAA..............................................................................................................................................................................................................................................................................................................................................................25161.8129000000901721000000
.........................................................................................................................................................................................................TTGATAAAAA-------AGGAACCGACGAGGCC......................................................................................................................................................................................................................................................................................................................................26131.5420000100130015000000
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....................................................................................................................................................................................................................................GAGGCCGGCAATCAAAA--------------------------------------------------------------------------------TAG-----ACG------AT........................................................................................................................................................................................................................2551.40700000000010060000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGAGGCT......................................................................................................................................................................................................................................................................................................................................25141.3619000000140401000000
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.............................................................................................................................................................................................................TAAAAA-------AGGAACCGACGAGGCCGGCA..................................................................................................................................................................................................................................................................................................................................26101.201200000012422010000
....................................................................................................................................................................................................................................GAGGCCGGCAATCAAAA--------------------------------------------------------------------------------TAG-----ACG------ATT.......................................................................................................................................................................................................................2651.20600000000000060000
......................................................................................................................................................................................................TGGTTGATAAAAA-------AGGAACC...............................................................................................................................................................................................................................................................................................................................................20151.2018000015000003000000
.....................................................................................................................................................................................................GTGGTTGATAAAAA-------AGGAACCGAC............................................................................................................................................................................................................................................................................................................................................24121.1714000000010000121000
...........................................................................................................................................................................................................GATAAAAA-------AGGAACCGACGAGGC.......................................................................................................................................................................................................................................................................................................................................23141.1416000200110201000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACG...........................................................................................................................................................................................................................................................................................................................................20141.0715000000100014000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGAGA........................................................................................................................................................................................................................................................................................................................................23141.0014000000110300000000
..............................................................................................................................................................................................................................ACCGACGAGGCCGGCAATCAAAA--------------------------------------------------------------------------------TAG-----A..................................................................................................................................................................................................................................2750.80400000030100000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGAC............................................................................................................................................................................................................................................................................................................................................19140.711000010000108000000
.............................................................................................................................................................................................................TAAAAA-------AGGAACCGACGAGGCCGGCAA.................................................................................................................................................................................................................................................................................................................................27100.70700000020120020000
..................................................................................................................................TAACAA-----C----------------------------------------------CCAATATGGGTGGTTGA...................................................................................................................................................................................................................................................................................................................................................................24130.69900000030312000000
.......................................................................................................................................A-----C----------------------------------------------CCAATATGGGTGGTTGATAAAAA-------A.....................................................................................................................................................................................................................................................................................................................................................26160.691100000071300000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACC...............................................................................................................................................................................................................................................................................................................................................16170.651100000020108000000
.....................................................................................................................................................................................................................................AGGCCGGCAATCAAAA--------------------------------------------------------------------------------TAG-----ACG------AT........................................................................................................................................................................................................................2450.60300000000000021000
....................................................................................................................................................................................................................................GAGGCCGGCAATCAAAA--------------------------------------------------------------------------------TAG-----ACG------A.........................................................................................................................................................................................................................2450.60300000000000030000
.....................................................................................................................................................................................................GTGGTTGATAAAAA-------AGGAACCGACG...........................................................................................................................................................................................................................................................................................................................................25120.58700000002010040000
.....................................................................................................................................................................................................GTGGTTGATAAAAA-------AGGAACCGACGAGGC.......................................................................................................................................................................................................................................................................................................................................29120.58700000007000000000
................................................................................................................................................................................................TATGGGTGGTTGATAAAAA-------AGGAACCGA.............................................................................................................................................................................................................................................................................................................................................28140.57800010020410000000
.....................................................................................................................................................................................................GTGGTTGATAAAAA-------AGGAACCGA.............................................................................................................................................................................................................................................................................................................................................23140.57800000001030040000
.......................................................................................................................................A-----C----------------------------------------------CCAATATGGGTGGTTGATAAAAA-------......................................................................................................................................................................................................................................................................................................................................................25160.56900000040500000000
......................................................................................................................................................................................................TGGTTGATAAAAA-------AGGAACCGACGAGG........................................................................................................................................................................................................................................................................................................................................27120.50600000004110000000
..........................................................................................................................................................................................................................................GGCAATCAAAA--------------------------------------------------------------------------------TAG-----ACG------ATTGG----------------------------------------------------------------------------------------------------------------------------------------------------------TC-------------------------------------------------------A.2520.50100000000001000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGAGGCCGGCAA.................................................................................................................................................................................................................................................................................................................................30100.50500000050000000000
.........................................................................................................................................................................................................................................CGGCAATCAAAA--------------------------------------------------------------------------------TAG-----ACG------ATTGG----------------------------------------------------------------------------------------------------------------------------------------------------------TC-------------------------------------------------------A.2620.50100000010000000000
......................................................................................................................................................................................................TGGTTGATAAAAA-------AGGAACCGACGA..........................................................................................................................................................................................................................................................................................................................................25120.50600000006000000000
.............................................................................................................................................................................................................TAAAAA-------AGGAACCGACGAGGC.......................................................................................................................................................................................................................................................................................................................................21140.50700000020302000000
......................................................................................................................................................................................................TGGTTGATAAAAA-------AGGAACCGACGAG.........................................................................................................................................................................................................................................................................................................................................26120.50600000003201000000
.............................................................................................................................................................................................................TAAAAA-------AGGAACCGACGAGGCC......................................................................................................................................................................................................................................................................................................................................22140.50700000020104000000
......................................................................................................................................................................................................................................GGCCGGCAATCAAAA--------------------------------------------------------------------------------TAG-----ACG------AT........................................................................................................................................................................................................................2350.40200000000001010000
.....................................................................................................................................................................................................................................AGGCCGGCAATCAAAA--------------------------------------------------------------------------------TAG-----ACG------ATT.......................................................................................................................................................................................................................2550.40200000000000020000
...................................................................................................................................................................................................................................CGAGGCCGGCAATCAAAA--------------------------------------------------------------------------------TAG-----ACG------A.........................................................................................................................................................................................................................2550.40200000010000010000
.........................................................................................................................................................................................................TTGATAAAAA-------AGGAACCGACGAG.........................................................................................................................................................................................................................................................................................................................................23130.38500000040100000000
.........................................................................................................................................................................................................TTGATAAAAA-------AGGAACCGACGA..........................................................................................................................................................................................................................................................................................................................................22130.38500000030101000000
.............................................................................................................................................................................................................TAAAAA-------AGGAACCGACGAGGCCGG....................................................................................................................................................................................................................................................................................................................................24110.36400000000103000000
...........................................................................................................................................................................................................GATAAAAA-------AGGAACCGACGAGG........................................................................................................................................................................................................................................................................................................................................22140.36500000030110000000
........................................................................................................................................................................................................GTTGATAAAAA-------AGGAACCGACGAGG........................................................................................................................................................................................................................................................................................................................................25120.33400000030100000000
..................................................................................................................................................................................................TGGGTGGTTGATAAAAA-------AGGAACCGAC............................................................................................................................................................................................................................................................................................................................................27120.33400010010002000000
.............................................................................................................................................................................................CAATATGGGTGGTTGATAAAAA-------AGGA..................................................................................................................................................................................................................................................................................................................................................26160.31500000030200000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGAGGA.......................................................................................................................................................................................................................................................................................................................................24140.29400000010111000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGAGGCA......................................................................................................................................................................................................................................................................................................................................25140.29400000000201010000
...........................................................................................................................................................................................................................GGAACCGACGAGGCC......................................................................................................................................................................................................................................................................................................................................15150.27400000000004000000
..........................................................................................................................................................................................................................AGGAACCGACGAGGC.......................................................................................................................................................................................................................................................................................................................................15150.27400000000004000000
.................................................................................................................................................................................................................AA-------AGGAACCGACGAGGCC......................................................................................................................................................................................................................................................................................................................................18150.27400000000004000000
.........................................................................................................................................................................................................................................CGGCAATCAAAA--------------------------------------------------------------------------------TAG-----ACG------ATTGG----------------------------------------------------------------------------------------------------------------------------------------------------------TC-------------------------------------------------------T.2640.25100000000010000000
.......................................................................................................................................................................................................GGTTGATAAAAA-------AGGAACCGACGAGGC.......................................................................................................................................................................................................................................................................................................................................27120.25300000012000000000
.............................................................................................................................................................................................................................................AATCAAAA--------------------------------------------------------------------------------TAG-----ACG------ATTGG----------------------------------------------------------------------------------------------------------------------------------------------------------...........................................................1940.25100000000001000000
................................................................................................................................................................................................TATGGGTGGTTGATAAAAA-------AGGA..................................................................................................................................................................................................................................................................................................................................................23170.24400000010300000000
........................................................................................................................................................................................................GTTGATAAAAA-------AGGAACCGACGAGGCCGGC...................................................................................................................................................................................................................................................................................................................................3090.22200000020000000000
..........................................................................................................................................................................................................................AGGAACCGACGAGGCCGGCAATCAAAA--------------------------------------------------------------------------------...........................................................................................................................................................................................................................................2790.22200000010100000000
..................................................................................................................................................................................................TGGGTGGTTGATAAAAA-------AGGAACCGA.............................................................................................................................................................................................................................................................................................................................................26140.21300000000201000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGAGGT.......................................................................................................................................................................................................................................................................................................................................24140.21300000010011000000
............................................................................................................................................................................................................ATAAAAA-------AGGAACCGACGAG.........................................................................................................................................................................................................................................................................................................................................20140.21300000002001000000
................................................................................................................................TATAACAA-----C----------------------------------------------CCAATATGG...........................................................................................................................................................................................................................................................................................................................................................................18140.21300000020100000000
..................................................................................................................................................................................................................................ACGAGGCCGGCAATCAAAA--------------------------------------------------------------------------------TAG-----ACG------ATT.......................................................................................................................................................................................................................2850.20100000000100000000
..................................................................................................................................................................................................................A-------AGGAACCGACGAGGC.......................................................................................................................................................................................................................................................................................................................................16150.20300000000003000000
................................................................................................................................................................................................................AAA-------AGGAACCGACGAGGCCGGC...................................................................................................................................................................................................................................................................................................................................22100.20200000000002000000
.................................................................................................................................................................................................................................................AAAA--------------------------------------------------------------------------------TAG-----ACG------ATTGG----------------------------------------------------------------------------------------------------------------------------------------------------------T..........................................................1650.20100000000001000000
...................................................................................................................................................................................................................................CGAGGCCGGCAATCAAAA--------------------------------------------------------------------------------TAG-----ACG------AA........................................................................................................................................................................................................................2650.20100000000000010000
...............................................................................................................................................................................................................................................TCAAAA--------------------------------------------------------------------------------TAG-----ACG------ATTGG----------------------------------------------------------------------------------------------------------------------------------------------------------T..........................................................1850.20100000000001000000
..........................................................................................................................................................................................................................................GGCAATCAAAA--------------------------------------------------------------------------------TAG-----ACG------ATT.......................................................................................................................................................................................................................2050.20100000000001000000
..........................................................................................................................................................................................................................................GGCAATCAAAA--------------------------------------------------------------------------------TAG-----A..................................................................................................................................................................................................................................1550.20100000010000000000
.....................................................................................................................................................................................................GTGGTTGATAAAAA-------AGGAAC................................................................................................................................................................................................................................................................................................................................................20150.20300000001000020000
.....................................................................................................................................................................................................GTGGTTGATAAAAA-------AGGAACC...............................................................................................................................................................................................................................................................................................................................................21150.20300000001020000000
................................................................................................................................................................................................................................CGACGAGGCCGGCAATCAAAA--------------------------------------------------------------------------------TAG-----ACG------A.........................................................................................................................................................................................................................2850.20100000010000000000
..........................................................................................................................................................................................................................AGGAACCGACGAGGCC......................................................................................................................................................................................................................................................................................................................................16150.20300000000003000000
...................................................................................................................................................................................................................................CGAGGCCGGCAATCAAAA--------------------------------------------------------------------------------TAG-----ACG------AT........................................................................................................................................................................................................................2650.20100000000001000000
.............................................................................................................................................................................................................................AACCGACGAGGCCGGC...................................................................................................................................................................................................................................................................................................................................16110.18200000010001000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCG..............................................................................................................................................................................................................................................................................................................................................17170.18300000000003000000
.......................................................................................................................................................................................................GGTTGATAAAAA-------AGGAACCGACGAGG........................................................................................................................................................................................................................................................................................................................................26120.17200000002000000000
......................................................................................................................................................................................................TGGTTGATAAAAA-------AGGAACCGACGAGGCC......................................................................................................................................................................................................................................................................................................................................29120.17200000011000000000
........................................................................................................................................................................................................GTTGATAAAAA-------AGGAACCGACGAGGCC......................................................................................................................................................................................................................................................................................................................................27120.17200000020000000000
.....................................................................................................................................................................................................GTGGTTGATAAAAA-------AGGAACCGACT...........................................................................................................................................................................................................................................................................................................................................25120.17200000001010000000
..................................................................................................................................TAACAA-----C----------------------------------------------CCAATATGGGTGGTTGATA.................................................................................................................................................................................................................................................................................................................................................................26130.15200000010100000000
................................................................................................................................TATAACAA-----C----------------------------------------------CCAATATGGGTGGTTGA...................................................................................................................................................................................................................................................................................................................................................................26130.15200000000011000000
.............................................................................................................................................................................................................TAAAAA-------AGGAACCGACGAGG........................................................................................................................................................................................................................................................................................................................................20140.14200000001100000000
...............................................................................................................................TTATAACAA-----C----------------------------------------------CCAATATGG...........................................................................................................................................................................................................................................................................................................................................................................19140.14200000000200000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGAGC........................................................................................................................................................................................................................................................................................................................................23140.14200000010001000000
..................................................................................................................................TAACAA-----C----------------------------------------------CCAATATGG...........................................................................................................................................................................................................................................................................................................................................................................16140.14200000002000000000
............................................................................................................................................................................................................ATAAAAA-------AGGAACCGACGAGGCC......................................................................................................................................................................................................................................................................................................................................23140.14200020000000000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGAGGCG......................................................................................................................................................................................................................................................................................................................................25140.14200000010001000000
...............................................................................................................................................................................................................AAAA-------AGGAACCGACGAGG........................................................................................................................................................................................................................................................................................................................................18150.13200000000002000000
................................................................................................................................................................................................................AAA-------AGGAACCGACGAGGC.......................................................................................................................................................................................................................................................................................................................................18150.13200000000002000000
.............................................................................................................................................................................................CAATATGGGTGGTTGATAAAAA-------AGGAA.................................................................................................................................................................................................................................................................................................................................................27150.13200000000200000000
................................................................................................................................................................................................TATGGGTGGTTGATAAAAA-------AGGAACC...............................................................................................................................................................................................................................................................................................................................................26150.13200000001001000000
...............................................................................................................................................................................................................AAAA-------AGGAACCGACGAGGC.......................................................................................................................................................................................................................................................................................................................................19150.13200000000002000000
...............................................................................................................................................................................................................AAAA-------AGGAACCGACGAGGCC......................................................................................................................................................................................................................................................................................................................................20150.13200000000002000000
.................................................................................................................................................................................................................AA-------AGGAACCGACGAGG........................................................................................................................................................................................................................................................................................................................................16150.13200000000002000000
................................................................................................................................................................................................TATGGGTGGTTGATAAAAA-------AGGAA.................................................................................................................................................................................................................................................................................................................................................24160.13200010001000000000
.......................................................................................................................................A-----C----------------------------------------------CCAATATGGGTGGTTGATAAAA..............................................................................................................................................................................................................................................................................................................................................................24160.13200000010100000000
....................................................................................................................................ACAA-----C----------------------------------------------CCAATATGGGTGGTTGATA.................................................................................................................................................................................................................................................................................................................................................................24160.13200000000200000000
......................................................................................................................................AA-----C----------------------------------------------CCAATATGGGTGGTTGATAAA...............................................................................................................................................................................................................................................................................................................................................................24160.13200000000200000000
....................................................................................................................................ACAA-----C----------------------------------------------CCAATATGGGTGGT......................................................................................................................................................................................................................................................................................................................................................................19160.13200000000002000000
....................................................................................................................................ACAA-----C----------------------------------------------CCAATATGGGTGGTTGATAAAA..............................................................................................................................................................................................................................................................................................................................................................27160.13200000000110000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGA.............................................................................................................................................................................................................................................................................................................................................18160.13200000000002000000
......................................................................................................................................................................................................TGGTTGATAAAAA-------AGGA..................................................................................................................................................................................................................................................................................................................................................17170.12200000000002000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAAC................................................................................................................................................................................................................................................................................................................................................15170.12200000010001000000
.....................................................................................................................................................................................................GTGGTTGATAAAAA-------AGGA..................................................................................................................................................................................................................................................................................................................................................18170.12200000002000000000
...........................................................................................................................................................................................................GATAAAAA-------AGGAACC...............................................................................................................................................................................................................................................................................................................................................15180.11200000010001000000
.................................................................................................................................................................................................................AA-------AGGAACCGACGAGGCCGGCAATCAAAA--------------------------------------------------------------------------------...........................................................................................................................................................................................................................................2990.11100000000100000000
.............................................................................................................................................................................................................TAAAAA-------AGGAACCGACGAGGCCGGCAATC...............................................................................................................................................................................................................................................................................................................................29100.10100000010000000000
.................................................................................................................................................................................................................AA-------AGGAACCGACGAGGCCGGCAATC...............................................................................................................................................................................................................................................................................................................................25100.10100000000100000000
..............................................................................................................................................................................................................AAAAA-------AGGAACCGACGAGGCCGGCAAT................................................................................................................................................................................................................................................................................................................................27100.10100000000010000000
...........................................................................................................................................................................................................GATAAAAA-------AGGAACCGACGAGGCCGGCAA.................................................................................................................................................................................................................................................................................................................................29100.10100000010000000000
...............................................................................................................................................................................................................AAAA-------AGGAACCGACGAGGCCGGCC..................................................................................................................................................................................................................................................................................................................................24100.10100000000100000000
...........................................................................................................................................................................................................GATAAAAA-------AGGAACCGACGAGGCCGGCA..................................................................................................................................................................................................................................................................................................................................28100.10100000010000000000
...............................................................................................................................................................................................................AAAA-------AGGAACCGACGAGGCCGGCA..................................................................................................................................................................................................................................................................................................................................24100.10100000000100000000
..............................................................................................................................................................................................................AAAAA-------AGGAACCGACGAGGCCGGC...................................................................................................................................................................................................................................................................................................................................24100.10100000000001000000
................................................................................................................................................................................................................AAA-------AGGAACCGACGAGGCCGGCAAT................................................................................................................................................................................................................................................................................................................................25100.10100000000001000000
..............................................................................................................................................................................................................................ACCGACGAGGCCGGCAATC...............................................................................................................................................................................................................................................................................................................................19100.10100000000001000000
...............................................................................................................................................................................................................AAAA-------AGGAACCGACGAGGCCGGCAA.................................................................................................................................................................................................................................................................................................................................25100.10100000010000000000
..............................................................................................................................................................................................................................ACCGACGAGGCCGGCAAT................................................................................................................................................................................................................................................................................................................................18100.10100000000001000000
.........................................................................................................................................................................................................TTGATAAAAA-------AGGAACCGACGAGGCCGGC...................................................................................................................................................................................................................................................................................................................................29100.10100000001000000000
.............................................................................................................................................................................................................TAAAAA-------AGGAACCGACGAGGCCGGCAAT................................................................................................................................................................................................................................................................................................................................28100.10100000000100000000
................................................................................................................................................................................................................AAA-------AGGAACCGACGAGGCCGG....................................................................................................................................................................................................................................................................................................................................21110.09100000000001000000
............................................................................................................................................................................................................................GAACCGACGAGGCCGG....................................................................................................................................................................................................................................................................................................................................16110.09100000000001000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGAGGCCGGA...................................................................................................................................................................................................................................................................................................................................28110.09100000010000000000
.............................................................................................................................................................................................................TAAAAA-------AGGAACCGACGAGGCCGGA...................................................................................................................................................................................................................................................................................................................................25110.09100000000100000000
..................................................................................................................................................................................................................A-------AGGAACCGACGAGGCCGG....................................................................................................................................................................................................................................................................................................................................19110.09100000000001000000
...........................................................................................................................................................................................................GATAAAAA-------AGGAACCGACGAGGCCGG....................................................................................................................................................................................................................................................................................................................................26110.09100010000000000000
..............................................................................................................................................................................................................................ACCGACGAGGCCGGCA..................................................................................................................................................................................................................................................................................................................................16110.09100000000001000000
.......................................................................................................................................................................................................GGTTGATAAAAA-------AGGAACCGAC............................................................................................................................................................................................................................................................................................................................................22120.08100000000001000000
........................................................................................................................................................................................................GTTGATAAAAA-------AGGAACCGACGAGGC.......................................................................................................................................................................................................................................................................................................................................26120.08100000000100000000
.............................................................................................................................................................................................................................AACCGACGAGGCCGG....................................................................................................................................................................................................................................................................................................................................15120.08100000000001000000
.....................................................................................................................................................................................................GTGGTTGATAAAAA-------AGGAACCGACGAGGCC......................................................................................................................................................................................................................................................................................................................................30120.08100000001000000000
.....................................................................................................................................................................................................GTGGTTGATAAAAA-------AGGAACCGACGATT........................................................................................................................................................................................................................................................................................................................................28120.08100000001000000000
........................................................................................................................................................................................................GTTGATAAAAA-------AGGAACCGACGAG.........................................................................................................................................................................................................................................................................................................................................24120.08100000010000000000
......................................................................................................................................................................................................TGGTTGATAAAAA-------AGGAACCGAC............................................................................................................................................................................................................................................................................................................................................23120.08100000000001000000
.....................................................................................................................................................................................................GTGGTTGATAAAAA-------AGGAACCGACGAGG........................................................................................................................................................................................................................................................................................................................................28120.08100000001000000000
.....................................................................................................................................................................................................GTGGTTGATAAAAA-------AGGAACCGACGAA.........................................................................................................................................................................................................................................................................................................................................27120.08100000000010000000
...............................................................................................................................................................................................................AAAA-------AGGAACCGACGAGGCCG.....................................................................................................................................................................................................................................................................................................................................21130.08100000000000001000
.........................................................................................................................................................................................................TTGATAAAAA-------AGGAACCGAC............................................................................................................................................................................................................................................................................................................................................20130.08100000000001000000
..................................................................................................................................TAACAA-----C----------------------------------------------CCAATATGGGTGGTTGT...................................................................................................................................................................................................................................................................................................................................................................24130.08100000000001000000
.........................................................................................................................................................................................................TTGATAAAAA-------AGGAACCGACGAGA........................................................................................................................................................................................................................................................................................................................................24130.08100000000001000000
..................................................................................................................................TAACAA-----C----------------------------------------------CCAATATGGGTGGTT.....................................................................................................................................................................................................................................................................................................................................................................22130.08100000000001000000
..............................................................................................................................................................................................................AAAAA-------AGGAACCGACGAGGCCG.....................................................................................................................................................................................................................................................................................................................................22130.08100000000001000000
......................................................................................................................................................................................................TGGTTGATAAAAA-------AGGAACCGA.............................................................................................................................................................................................................................................................................................................................................22140.07100000000100000000
............................................................................................................................................................................................................................GAACCGACGAGGCCG.....................................................................................................................................................................................................................................................................................................................................15140.07100000000001000000
.............................................................................................................................................................................................................TAAAAA-------AGGAACCGACGAG.........................................................................................................................................................................................................................................................................................................................................19140.07100000000100000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGAGGCCC.....................................................................................................................................................................................................................................................................................................................................26140.07100000010000000000
..............................................................................................................................................................................................AATATGGGTGGTTGATAAAAA-------AGGAACCGA.............................................................................................................................................................................................................................................................................................................................................30140.07100000010000000000
.....................................................................................................................................................................................................GTGGTTGATAAAAA-------AGGAACCGAATT..........................................................................................................................................................................................................................................................................................................................................26140.07100000000000010000
................................................................................................................................TATAACAA-----C----------------------------------------------CCAATATGGA..........................................................................................................................................................................................................................................................................................................................................................................19140.07100000001000000000
...........................................................................................................................................................................................................GATAAAAA-------AGGAACCGAC............................................................................................................................................................................................................................................................................................................................................18140.07100000000001000000
...........................................................................................................................................................................................................GATAAAAA-------AGGAACCGACGAGGT.......................................................................................................................................................................................................................................................................................................................................23140.07100000000100000000
......................................................................................................................................AA-----C----------------------------------------------CCAATATGGGTGGTTGATAAAAA-------AGGAA.................................................................................................................................................................................................................................................................................................................................................31140.07100000000100000000
.............................................................................................................................................................................................................TAAAAA-------AGGAACCGACG...........................................................................................................................................................................................................................................................................................................................................17140.07100000000001000000
..........................................................................................................................................................................................................TGATAAAAA-------AGGAACCGACGATC........................................................................................................................................................................................................................................................................................................................................23140.07100000010000000000
.............................................................................................................................................................................................................TAAAAA-------AGGAACCGACGA..........................................................................................................................................................................................................................................................................................................................................18140.07100000000001000000
.............................................................................................................................................................................................CAATATGGGTGGTTGATAAAAA-------AGGAACC...............................................................................................................................................................................................................................................................................................................................................29140.07100000010000000000
...........................................................................................................................................................................................................GATAAAAA-------AGGAACCGACGA..........................................................................................................................................................................................................................................................................................................................................20140.07100000010000000000
.................................................................................................................................................................................................................AA-------AGGAACCGACGAGGC.......................................................................................................................................................................................................................................................................................................................................17150.07100000000001000000
.....................................................................................................................................................................................................GTGGTTGATAAAAA-------AGGAACCGTAA...........................................................................................................................................................................................................................................................................................................................................25150.07100000000000010000
..................................................................................................................................................................................................................A-------AGGAACCGACGAGG........................................................................................................................................................................................................................................................................................................................................15150.07100000000001000000
droSec2
AGTTTTAAATAAATAA-ATATATAAAAATAAAAATAA-----------ATAAAAA----TTAAAAATA----------------------------------------------------------------CAAATAA-----AATAAACTATTAC------------------------------------------AGCTAAGGCAGTAAGCAGTTGTAA------------------------------------------TAAGTAGACG-----------------------------------ATGTACAGGG-TACTCT------T------AAG-----------------------------------------------------------------------------------------------------------------------CCGA-----------------------------------GA-------------------------------------------------------TTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ATTAGTTAATATATAA-ACAAAAAAATA----GTAT------------ATAAAAA----ATATTTATA----------------------------------------------------------------AATT-----A----------------------------------------------TTATTATTTAAAATTAAACGAACAAAAACTTATAATGTAAAG------------------------------------------AAC-----------------------------------A--------------T-----------------------------------------------GAA-----ATCACAA-----------------------------------------------------------------------------------------------------------------CAT--------------------------------TG--------------------AGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AAAT-AATATAAGTAT-GTATAATAATAAAATAATAT------------T-A---ATAGAATTATATA-----------------------------------------------------AT----------AAA----------------------------------------------------------------ATAATAATAATAATATATTATTA------------------------------------------TTTATAGACA-----------------------------------CAATATCGAG-G----------------------------------------------------------------------------------------------------------------------------------ATTACAAATATT------------------------------------------------------------------------AA--------------------AASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 03:00 AM