ID:

dmo_26

 Coordinate:

scaffold_6328:4397506-4397569 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-38.5 -37.7

Flybase annnotation

utr3 [utr3_minus_9718]

No Repeatable elements found

Sense Strand Reads

GTTTATTTTTTTTAATATCTGTGGATAAAAATAGTAATCTACATTGAACTCAGGTTTCGTTAGCAACGGGCTGTGATGATTAAAAGAACAAGTTCGTTGTCGACGAAACCTGCATGCTATGTGGAGAGGCAACCATTCTATTGAAGATGACTGCGAATCTTAAA

***********************************..(((((((......(((((((((((.((((((((((((.............)).)))))))))).)))))))))))......)))))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V056

head

 V049

head

 M046

female body

 M060

embryo

 V041

embryo

 V110

male body
............................................................................................TTCGTTGTCGACGAAACCTGC................................................... 21 0 1 2880.00 2880 1263 986 437 161 17 16
............................................................................................TTCGTTGTCGACGAAACCTGCA.................................................. 22 0 1 2537.00 2537 600 331 839 733 27 7
..................................................CAGGTTTCGTTAGCAACGGGCT............................................................................................ 22 0 1 334.00 334 56 34 4 208 29 3
............................................................................................TTCGTTGTCGACGAAACCTG.................................................... 20 0 1 322.00 322 98 80 141 3 0 0
............................................................................................TTCGTTGTCGACGAAACCTGT................................................... 21 1 1 159.00 159 85 69 4 0 0 1
............................................................................................TGCGTTGTCGACGAAACCTGCA.................................................. 22 1 1 108.00 108 2 0 0 106 0 0
.............................................................................................TCGTTGTCGACGAAACCTGCA.................................................. 21 0 1 86.00 86 3 1 78 4 0 0
..................................................CAGGTTTCGTTAGCAACGGGC............................................................................................. 21 0 1 82.00 82 0 0 2 77 3 0
............................................................................................TTCGTTGTCGACGAAACCTGCAA................................................. 23 1 1 63.00 63 16 11 25 11 0 0
..................................................CAGGTTTCGTTAGCAACGGGCC............................................................................................ 22 1 1 53.00 53 0 0 0 53 0 0
.............................................................................................TCGTTGTCGACGAAACCTGC................................................... 20 0 1 49.00 49 1 1 47 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCAT................................................. 23 0 1 48.00 48 15 11 19 2 0 1
............................................................................................TTCGTTGTCGACGAAACCT..................................................... 19 0 1 43.00 43 11 11 20 1 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCC.................................................. 22 1 1 37.00 37 7 20 1 9 0 0
............................................................................................TTAGTTGTCGACGAAACCTGCA.................................................. 22 1 1 33.00 33 2 0 0 31 0 0
............................................................................................TGCGTTGTCGACGAAACCTGC................................................... 21 1 1 27.00 27 0 1 0 26 0 0
............................................................................................TTCGTTGTCGACGCAACCTGC................................................... 21 1 1 26.00 26 3 22 0 0 1 0
............................................................................................TTCGTTGTCGACGAAACCTGA................................................... 21 1 1 21.00 21 19 2 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCT.................................................. 22 1 1 17.00 17 4 2 4 7 0 0
............................................................................................TTCGTTGTCGACGAAACCTTC................................................... 21 1 1 17.00 17 5 11 0 0 1 0
............................................................................................TTCGTTGTCGACGACACCTGCA.................................................. 22 1 1 16.00 16 5 10 0 1 0 0
............................................................................................TTCGTTGTCGACGACACCTGC................................................... 21 1 1 15.00 15 0 15 0 0 0 0
............................................................................................TTAGTTGTCGACGAAACCTGC................................................... 21 1 1 15.00 15 3 2 0 10 0 0
.............................................................................................TCGTTGTCGACGAAACCTG.................................................... 19 0 1 13.00 13 0 0 13 0 0 0
............................................................................................TTCGTTGTCGACGAGACCTGC................................................... 21 1 1 11.00 11 6 4 0 1 0 0
............................................................................................TTCTTTGTCGACGAAACCTGCA.................................................. 22 1 1 11.00 11 0 0 0 10 0 1
...................................................AGGTTTCGTTAGCAACGGGCT............................................................................................ 21 0 1 11.00 11 4 1 1 4 1 0
............................................................................................TTCGTTGTCGACGAAACCGGC................................................... 21 1 1 10.00 10 7 3 0 0 0 0
..................................................CGGGTTTCGTTAGCAACGGGCT............................................................................................ 22 1 1 10.00 10 0 0 0 10 0 0
............................................................................................TTCGTTGTCGACGAAACC...................................................... 18 0 1 10.00 10 0 0 1 9 0 0
............................................................................................TTCGTTGTCGACGAACCCTGC................................................... 21 1 1 10.00 10 3 7 0 0 0 0
............................................................................................TTCGTTGTCGCCGAAACCTGCA.................................................. 22 1 1 10.00 10 0 1 1 8 0 0
............................................................................................TTCGTTGTCGACTAAACCTGC................................................... 21 1 1 9.00 9 7 2 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTCC................................................... 21 1 1 9.00 9 8 1 0 0 0 0
............................................................................................TTCGTTGTCGATGAAACCTGC................................................... 21 1 1 8.00 8 5 2 1 0 0 0
..................................................CACGTTTCGTTAGCAACGGGCT............................................................................................ 22 1 1 8.00 8 0 0 0 8 0 0
............................................................................................TTCGTTGGCGACGAAACCTGC................................................... 21 1 1 7.00 7 6 1 0 0 0 0
............................................................................................TTCGTGGTCGACGAAACCTGCA.................................................. 22 1 1 7.00 7 4 0 0 3 0 0
...............................................................................................GTTGTCGACGAAACCTGC................................................... 18 0 1 7.00 7 5 1 1 0 0 0
............................................................................................TTCGTTGTCGCCGAAACCTGC................................................... 21 1 1 7.00 7 0 7 0 0 0 0
.............................................................................................TCGTTGTCGACGAAACCTGCAA................................................. 22 1 1 7.00 7 4 1 2 0 0 0
............................................................................................TTCGTTGTCGTCGAAACCTGC................................................... 21 1 1 7.00 7 2 5 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTTCA.................................................. 22 1 1 7.00 7 1 3 1 1 1 0
..................................................CGGGTTTCGTTAGCAACGGGC............................................................................................. 21 1 1 6.00 6 0 0 0 6 0 0
............................................................................................TTCGTTGTCGACGCAACCTGCA.................................................. 22 1 1 6.00 6 3 3 0 0 0 0
............................................................................................TTCGTTGTCGACTAAACCTGCA.................................................. 22 1 1 6.00 6 0 5 1 0 0 0
............................................................................................TTCGTTGGCGACGAAACCTGCA.................................................. 22 1 1 6.00 6 3 3 0 0 0 0
..................................................CAGGTTTCGTTAGCAACGGGCTT........................................................................................... 23 1 1 6.00 6 1 1 0 4 0 0
............................................................................................TTCGTTGTCGACAAAACCTGC................................................... 21 1 1 6.00 6 0 6 0 0 0 0
............................................................................................TTCGTTGTCGACCAAACCTGC................................................... 21 1 1 6.00 6 4 1 1 0 0 0
............................................................................................TTCGTGGTCGACGAAACCTGC................................................... 21 1 1 6.00 6 4 0 0 2 0 0
..................................................CAGGTTTCGTTAGCCACGGGCT............................................................................................ 22 1 1 6.00 6 1 4 0 0 1 0
............................................................................................TTCGCTGTCGACGAAACCTGC................................................... 21 1 1 6.00 6 5 1 0 0 0 0
............................................................................................TTCGTTGTCGGCGAAACCTGC................................................... 21 1 1 6.00 6 4 2 0 0 0 0
..............................................................................................CGTTGTCGACGAAACCTGC................................................... 19 0 1 5.00 5 1 1 3 0 0 0
............................................................................................TTCGTTGTAGACGAAACCTGC................................................... 21 1 1 5.00 5 4 1 0 0 0 0
............................................................................................TTCGTTGTCGACAAAACCTGCA.................................................. 22 1 1 5.00 5 0 1 1 3 0 0
............................................................................................TTCGTTGTCGACGAAACATGC................................................... 21 1 1 5.00 5 4 0 0 0 1 0
..............................................................................................CGTTGTCGACGAAACCTGCA.................................................. 20 0 1 5.00 5 0 0 5 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCAC................................................. 23 1 1 5.00 5 1 0 1 3 0 0
............................................................................................CTCGTTGTCGACGAAACCTGC................................................... 21 1 1 5.00 5 3 2 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCG.................................................. 22 1 1 5.00 5 4 1 0 0 0 0
............................................................................................TTCGTTTTCGACGAAACCTGCA.................................................. 22 1 1 4.00 4 0 1 0 3 0 0
............................................................................................TTCGTTGTCGACGAAACCTGTA.................................................. 22 1 1 4.00 4 2 0 0 2 0 0
............................................................................................TTCGATGTCGACGAAACCTGCA.................................................. 22 1 1 4.00 4 1 0 0 3 0 0
............................................................................................TTCGTTGTCGACGAAACCCGC................................................... 21 1 1 4.00 4 2 1 1 0 0 0
............................................................................................TTCGTTGTCCACGAAACCTGC................................................... 21 1 1 4.00 4 2 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTAC................................................... 21 1 1 4.00 4 3 0 0 1 0 0
............................................................................................TTCGTTGTCGACGGAACCTGC................................................... 21 1 1 4.00 4 2 2 0 0 0 0
............................................................................................CTCGTTGTCGACGAAACCTGCA.................................................. 22 1 1 4.00 4 1 1 0 2 0 0
............................................................................................TTCGCTGTCGACGAAACCTGCA.................................................. 22 1 1 4.00 4 2 0 0 1 1 0
............................................................................................TTCGTTGTCTACGAAACCTGC................................................... 21 1 1 4.00 4 1 3 0 0 0 0
............................................................................................TTCGTTATCGACGAAACCTGC................................................... 21 1 1 4.00 4 2 2 0 0 0 0
............................................................................................TTCGTTGTCGACGAGACCTGCA.................................................. 22 1 1 4.00 4 2 0 2 0 0 0
............................................................................................TTCCTTGTCGACGAAACCTGC................................................... 21 1 1 4.00 4 3 1 0 0 0 0
...........................................................................................CTTCGTTGTCGACGAAACCTGCA.................................................. 23 1 1 4.00 4 1 0 1 2 0 0
............................................................................................TTCGTTGTCGACGAAGCCTGCA.................................................. 22 1 1 4.00 4 1 1 1 1 0 0
............................................................................................TTCGTTGCCGACGAAACCTGCA.................................................. 22 1 1 4.00 4 2 1 1 0 0 0
............................................................................................TTCGGTGTCGACGAAACCTGC................................................... 21 1 1 4.00 4 3 1 0 0 0 0
............................................................................................ATCGTTGTCGACGAAACCTGC................................................... 21 1 1 4.00 4 0 1 0 3 0 0
............................................................................................TTCGTTGTTGACGAAACCTGC................................................... 21 1 1 3.00 3 1 2 0 0 0 0
............................................................................................TTCGTTGTCGACGAAAC....................................................... 17 0 1 3.00 3 3 0 0 0 0 0
............................................................................................TTCGTTGTCGATGAAACCTGCA.................................................. 22 1 1 3.00 3 2 1 0 0 0 0
............................................................................................TTCGTTGTCGACGAAGCCTGC................................................... 21 1 1 3.00 3 1 2 0 0 0 0
..................................................CAGGTTTCGTTAGCAACGGAC............................................................................................. 21 1 1 3.00 3 0 0 0 3 0 0
............................................................................................TTCGTTGTCGACGACACCTG.................................................... 20 1 1 3.00 3 1 2 0 0 0 0
............................................................................................TTCGTTGTCGACCAAACCTGCA.................................................. 22 1 1 3.00 3 1 0 0 2 0 0
............................................................................................TTCGGTGTCGACGAAACCTGCA.................................................. 22 1 1 3.00 3 1 1 0 1 0 0
..................................................CTGGTTTCGTTAGCAACGGGCT............................................................................................ 22 1 1 3.00 3 0 1 0 2 0 0
............................................................................................TTTGTTGTCGACGAAACCTGC................................................... 21 1 1 3.00 3 2 1 0 0 0 0
..................................................CTGGTTTCGTTAGCAACGGGCC............................................................................................ 22 2 1 3.00 3 0 0 0 3 0 0
............................................................................................TTCGTTGTCGAAGAAACCTGC................................................... 21 1 1 3.00 3 0 1 1 1 0 0
............................................................................................TTCGTTGTCAACGAAACCTGC................................................... 21 1 1 3.00 3 1 2 0 0 0 0
............................................................................................TTCGATGTCGACGAAACCTGC................................................... 21 1 1 3.00 3 2 0 0 1 0 0
............................................................................................TTGGTTGTCGACGAAACCTGCA.................................................. 22 1 1 3.00 3 0 2 0 1 0 0
............................................................................................TTCGTTGTCAACGAAACCTGCA.................................................. 22 1 1 3.00 3 0 1 0 2 0 0
............................................................................................TTCGTTGTCGGCGAAACCTGCA.................................................. 22 1 1 3.00 3 1 1 0 1 0 0
............................................................................................TTCGTTGGCGACGAAACCGGC................................................... 21 2 1 3.00 3 1 2 0 0 0 0
..................................................CAGGTTTCGTTAGCAACGGG.............................................................................................. 20 0 1 3.00 3 2 1 0 0 0 0
............................................................................................TGAGTTGTCGACGAAACCTGCA.................................................. 22 2 1 2.00 2 0 0 0 2 0 0
............................................................................................TTCGTTGTCGACGAAACCTACA.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TGCGTTGCCGACGAAACCTGCA.................................................. 22 2 1 2.00 2 0 0 0 2 0 0
..................................................CAGGTTTCGTTAGCAACAGGCT............................................................................................ 22 1 1 2.00 2 0 1 0 0 1 0
............................................................................................TTCGTTGGCGACGAAACCTGT................................................... 21 2 1 2.00 2 0 2 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTT.................................................... 20 1 1 2.00 2 1 1 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACGTTC................................................... 21 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TTCGTTGTCGACGAATCCTGC................................................... 21 1 1 2.00 2 0 0 0 2 0 0
............................................................................................TTCGTTGTCGCCGAAACCTGCC.................................................. 22 2 1 2.00 2 0 1 0 1 0 0
............................................................................................TTCGTTGTAGACGAAACCTGCA.................................................. 22 1 1 2.00 2 0 0 0 2 0 0
............................................................................................TTCGTTGTCGAAGAAACCTGCA.................................................. 22 1 1 2.00 2 0 0 1 1 0 0
............................................................................................TTCGTTGTCGACGAAACATGCA.................................................. 22 1 1 2.00 2 1 1 0 0 0 0
............................................................................................TTCGTCGTCGACGAAACCTGCA.................................................. 22 1 1 2.00 2 1 1 0 0 0 0
...................................................AGGTTTCGTTAGCAACGGGC............................................................................................. 20 0 1 2.00 2 1 0 0 1 0 0
...................................................ATGTTTCGTTAGCAACGGGCT............................................................................................ 21 1 1 2.00 2 0 0 0 2 0 0
............................................................................................TTCGTTGTCTACGAAACCTGT................................................... 21 2 1 2.00 2 2 0 0 0 0 0
..................................................CAGGCTTCGTTAGCAACGGGCC............................................................................................ 22 2 1 2.00 2 0 0 0 2 0 0
............................................................................................TTCGTTGTCGAGGAAACCTGC................................................... 21 1 1 2.00 2 0 0 2 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGG................................................... 21 1 1 2.00 2 0 1 1 0 0 0
............................................................................................TTCGTTGTCGACTAAAACTGC................................................... 21 2 1 2.00 2 1 1 0 0 0 0
............................................................................................TTCGTTGACGACGAAACCTGC................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCATT................................................ 24 1 1 2.00 2 0 1 1 0 0 0
...........................................................................................ATTCGTTGTCGACGAAACCTGC................................................... 22 1 1 2.00 2 0 1 1 0 0 0
..................................................CAGGTTTCGTTCGCAACGGGCT............................................................................................ 22 1 1 2.00 2 0 1 0 0 1 0
............................................................................................TTCGTTGTCGACGGAACCTGCA.................................................. 22 1 1 2.00 2 1 0 0 1 0 0
............................................................................................TGCGTTGTAGACGAAACCTGC................................................... 21 2 1 2.00 2 0 2 0 0 0 0
...............................................................................................GTTGTCGACGAAACCTGCA.................................................. 19 0 1 2.00 2 0 2 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACTTGC................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TTCGTTGACGACGAAACCTGCA.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
..................................................CAGGTTTCGTTAGCAACGGGCTC........................................................................................... 23 1 1 2.00 2 0 0 0 2 0 0
..................................................CGGGTTTCGTTAACAGCGGGCT............................................................................................ 22 3 1 2.00 2 0 1 0 1 0 0
............................................................................................TCCGTTGTCGACGAAACCTGCA.................................................. 22 1 1 2.00 2 0 0 2 0 0 0
............................................................................................TTCGTTGTCGACGAAAACTGC................................................... 21 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................CTTCGTTGTCGACGAAACCTGC................................................... 22 1 1 2.00 2 0 2 0 0 0 0
............................................................................................TCCGTTGTCGACGAAACCTGC................................................... 21 1 1 2.00 2 0 2 0 0 0 0
............................................................................................TTCTTTGTCGACGAAACCTGC................................................... 21 1 1 2.00 2 0 1 0 1 0 0
............................................................................................TTCGTTGTCGACGAAACCTCCA.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TTCGGTGTCGACGAAACCGGC................................................... 21 2 1 2.00 2 2 0 0 0 0 0
..................................................CTGGTTTCGTTAGCAACGGGC............................................................................................. 21 1 1 2.00 2 0 0 0 2 0 0
............................................................................................TGCGTTGTCGACGAAACCTG.................................................... 20 1 1 2.00 2 0 0 0 2 0 0
............................................................................................TTCGTTGTCGACGAAACCTGAA.................................................. 22 1 1 2.00 2 0 1 0 0 1 0
............................................................................................TTCGTTGTCGACGAACCCTGCC.................................................. 22 2 1 2.00 2 1 1 0 0 0 0
............................................................................................TTCGTTGTCGGCTAAACCTGC................................................... 21 2 1 2.00 2 0 2 0 0 0 0
............................................................................................TTCGTTGTCGACGATACCTGC................................................... 21 1 1 2.00 2 1 1 0 0 0 0
............................................................................................TTCGTTGTCTACGAAACCTG.................................................... 20 1 1 2.00 2 0 2 0 0 0 0
............................................................................................TGCGTTGTCGCCGAAACCTGC................................................... 21 2 1 2.00 2 0 0 0 2 0 0
............................................................................................TTCGTTGTCGACGACACCTTC................................................... 21 2 1 2.00 2 0 2 0 0 0 0
............................................................................................TTAGTTGTCGACGAAACCTGCAA................................................. 23 2 1 2.00 2 0 0 0 2 0 0
............................................................................................TCCGTTGTCGACGAAACCTG.................................................... 20 1 1 2.00 2 0 2 0 0 0 0
............................................................................................TTCGTTGTCGACGACACCTGCC.................................................. 22 2 1 2.00 2 0 2 0 0 0 0
..................................................CAGGTTTCGTTATCAACGGTCT............................................................................................ 22 2 1 2.00 2 1 1 0 0 0 0
................................................................................................TTGTCGACGAAACCTGCA.................................................. 18 0 1 2.00 2 1 1 0 0 0 0
............................................................................................TTCGTTGCCGACGAAACCTGC................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TGCGTTGTCGACGAAACCTGCC.................................................. 22 2 2 1.50 3 0 1 0 2 0 0
............................................................................................TTCGTTGTCGTCGAAACCTG.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTGTCGACGCAACCTGT................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGCCGAAACCTGGC.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................TTAGTTGTCGACGAAACCTCCAT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGAC.................................................. 22 2 1 1.00 1 0 0 0 1 0 0
............................................................................................TTCGTTGTCGACGAAAACTGA................................................... 21 2 1 1.00 1 0 1 0 0 0 0
..................................................CAGGTTTCGTTAGCAACGGATT............................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGCTGTCGACGAAACCTCCC.................................................. 22 3 1 1.00 1 1 0 0 0 0 0
...........................................................................................CTTCGGTGTCGACGAAACCTGC................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACACGA................................................... 21 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGATGTCGACAAAACCTGCC.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTCTCGACGAAACCTGC................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................GGCCGTTGTCGACGAAACCTGC................................................... 22 2 1 1.00 1 0 0 0 1 0 0
..........................................................................................TTTTCGTTGTCGACGAAACCTGC................................................... 23 2 1 1.00 1 0 0 1 0 0 0
..............................................................................................CGTTGTCGACGAAACCTGCAA................................................. 21 1 1 1.00 1 0 0 1 0 0 0
............................................................................................TTCGTTGTCGACTAAACCTGTC.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGATGTCGACTAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACGTAACCTGC................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..................................................CAGGCTTCGTTAGCAACGGGC............................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0
............................................................................................TTCGACGTCGACGAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTAGATGTCGACGAAACCTGCA.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACCAAACCTACA.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
..................................................CAGCTTTCGTTAGCAACGGGCT............................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0
............................................................................................TTCGTTGTCGACGAAACTTGCA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTTCAA................................................. 23 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTCTCGACAAAACCTCC................................................... 21 3 1 1.00 1 0 1 0 0 0 0
............................................................................................TGCGTTGACGACGAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................CTCGTTGTCGACGAAACCTTC................................................... 21 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTGGTCGACGAAACCTG.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGTCGAAACCTCCA.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTGTCGACGAATCCTGCA.................................................. 22 1 1 1.00 1 0 0 0 1 0 0
............................................................................................TTCGTTGGCGACGAAACCTGCT.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTGTCGACTAAACCTGT................................................... 21 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTGGCGACGAAACCTCC................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................CGGGTTTCGTTAGCAACGGGCC............................................................................................ 22 2 1 1.00 1 0 0 0 1 0 0
.............................................................................................TCGTTGTCGACGAAAACTGCA.................................................. 21 1 1 1.00 1 0 0 1 0 0 0
..................................................CGGGTTTCGTTAGCAGCGGGCT............................................................................................ 22 2 1 1.00 1 0 0 0 0 1 0
............................................................................................TTCGTTGTCGACGAAACCTGCTGA................................................ 24 3 1 1.00 1 1 0 0 0 0 0
...........................................................................................GTTCGTTGTCGACGAAACCTG.................................................... 21 0 1 1.00 1 0 0 1 0 0 0
............................................................................................TTCGTTGGCGACGAAACCTG.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACCAAACCTGTA.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTGTCAACGAAACCTG.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGATGGCGACGAAACCTGCA.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTAGTTGGCGACGAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGGCGTAACCTGT................................................... 21 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACGAAAGCTGCA.................................................. 22 1 1 1.00 1 0 0 0 1 0 0
............................................................................................TTCGTTGTCGACGAGGCCTG.................................................... 20 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCATCT............................................... 25 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACGAACCCACC................................................... 21 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCGTTGTCGACGAAGCCTACAA................................................. 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGGTGTCGGCGAAACCTGCC.................................................. 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACCCGCC.................................................. 22 2 1 1.00 1 0 0 0 1 0 0
............................................................................................TTCGTTGTCGACGCAACCTCCA.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGCTGTCGACTAAACCTGC................................................... 21 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTGTCGACGATACGTG.................................................... 20 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GTCGTTGTCGACGAAACCCGC................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................GTTCGTTGTCGACGAAACCTGCA.................................................. 23 0 1 1.00 1 0 0 1 0 0 0
..................................................CAGGTTTCGTTAGCAACGGGT............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACTCAACCTGCT.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCTTTT............................................... 25 3 1 1.00 1 1 0 0 0 0 0
..................................................CAGGTTTCGTTAGCACCGGGAT............................................................................................ 22 2 1 1.00 1 0 0 0 0 1 0
............................................................................................TTCGTTGTCGACGAAACCTGCCT................................................. 23 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................TTCTTGTCGACGAAACCTGCA.................................................. 21 2 1 1.00 1 0 0 0 1 0 0
............................................................................................TTCGTGGTCGACTAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACTCAACCTGCAA................................................. 23 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACTAACCCTGC................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTACACGAAACCTGC................................................... 21 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCCTTGTCGCCGAAACGTGC................................................... 21 3 1 1.00 1 0 1 0 0 0 0
.........................................................................................CGCTTCGTTGTCGACGAAACCTGCA.................................................. 25 3 1 1.00 1 0 0 1 0 0 0
..................................................CAGGTTTCGTTATCTACGGGCC............................................................................................ 22 3 1 1.00 1 0 0 0 0 1 0
...........................................................................................CTTCGTTGTCGACGAAACCTGCAG................................................. 24 2 1 1.00 1 0 0 0 1 0 0
............................................................................................TTTGTTGTCGACGAAACCTGCA.................................................. 22 1 1 1.00 1 0 0 0 1 0 0
............................................................................................TTCGTTGTCGAAGAAACCTGCAA................................................. 23 2 1 1.00 1 0 0 1 0 0 0
............................................................................................TTCGTTGTCGACGAAAAATGC................................................... 21 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTGTCTACGATACCTGCC.................................................. 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTACCGACGCAACCTGCA.................................................. 22 3 1 1.00 1 1 0 0 0 0 0
..................................................CAGGTTTCGCTAGCGACGGGCT............................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTGTCCACGACACCTGC................................................... 21 2 1 1.00 1 0 1 0 0 0 0
..................................................CAGGTTTCGTTAGCAACGGGAT............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACGCAACCTCC................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTTTCGACGAAACCTGC................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TCCGTTGTCGACTAAACCTGC................................................... 21 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................TCGTTGTCGACGAAACCTGCACC................................................ 23 2 1 1.00 1 0 0 1 0 0 0
.....................................................GTTTCGTTAGCAACGGGCT............................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0
............................................................................................TTCGTTGGCGACGCAACCTGCA.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACGAGACCTGAG.................................................. 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACTAAACCCGC................................................... 21 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTGACGACGAAACCTGCC.................................................. 22 2 1 1.00 1 0 0 0 1 0 0
............................................................................................TTCGTTGTCGACGATACCTGCA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTTGACGAAACTCGC................................................... 21 3 1 1.00 1 0 1 0 0 0 0
..................................................CAGCATTCGGTAGCAACGGGCT............................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0
..................................................CGGGTTTCGTTAGCAACGGGAT............................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACTGGCC.................................................. 22 3 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................TATGTGGAGAGGCAAAC.............................. 17 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACAAAACCT..................................................... 19 1 1 1.00 1 0 0 1 0 0 0
............................................................................................TTCGTTGTCGACGAACCCTGAC.................................................. 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACCCGT................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACGTAACCTGCA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGCGTTGTCGAAGAAACCTGCA.................................................. 22 2 1 1.00 1 0 0 0 1 0 0
............................................................................................CTCGTTGTCGACGAAACCTGCAT................................................. 23 1 1 1.00 1 0 1 0 0 0 0
..................................................CAGGTTTCGTTAGTAACGGGCT............................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0
............................................................................................TGCGTTGTCGACGAGACCTGCA.................................................. 22 2 1 1.00 1 0 0 0 1 0 0
............................................................................................TTCGTTGTCGACGATACATGC................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGATGTCGACGAAACCTGCT.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCATTGTCGACGAAACCTGT................................................... 21 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTGTCGACGAACACTGCA.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCCA................................................. 23 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTGGTCGACGAACCCTGCA.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGTCGAAACCGGC................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTCGTCGACGAAACCTGT................................................... 21 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTGGTCGACCAAACCTGG................................................... 21 3 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACCGG.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
............................................................................................GTTGTTGTCGACGAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................ATCGTTCTCGACGTAACCTGC................................................... 21 3 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGCTGTCGACGAAACCTTC................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................CAGGTTTCCTTAGCAACGGGCT............................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0
............................................................................................TTCGTTTTCGACGAAACCTCC................................................... 21 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGATGTCGACGAACCCTGCA.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTAGTTGGCGACGAAACCTGCA.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................TCGTTGTCGTCGAAACCTGCA.................................................. 21 1 1 1.00 1 0 0 0 1 0 0
............................................................................................TTCGTTGTCTACTAAACCTGC................................................... 21 2 1 1.00 1 0 1 0 0 0 0
..................................................CAGTTTTCGTTAGCAACGGGCTT........................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0
............................................................................................TTAGTTGTCTACGAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCCGTTGTCCACGAAACCCGC................................................... 21 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCCAAGAAACCTGCA.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..................................................CAGGTGTCGTTAGCAACGGGCC............................................................................................ 22 2 1 1.00 1 0 0 0 1 0 0
...................................................AGGTTTCTTTAGCAACGGGCT............................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0
............................................................................................TTCGTTGTCGACGACACCT..................................................... 19 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTGGTAGACGAAACCTG.................................................... 20 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTAGTTGTCGACGAAACCTCCA.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
...................................................AGGTTTCGTTAGCAACAGGCT............................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTGTCGACAAAACCTTCA.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
..................................................TAGGATTCGTTGGCAACGGGCT............................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGGCGACGAAACCTGCC.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTTTCGACGAAACCTTC................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGCCGACCCCTGC................................................... 21 3 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCGTTGTCGACTAAACCTGCAA................................................. 23 2 1 1.00 1 0 1 0 0 0 0
............................................................................................CTCGTTGTCGACGCAACCTGCA.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
..................................................CAGGTTTCGTTAGCAACGGGCTA........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TTAGTTGTCGACGAAAACTGC................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACGAAACTTGT................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTGGTCGACGAAACCTGCAT................................................. 23 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACTGAACCTGCC.................................................. 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGTCGACCAAACCTGCC.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
..................................................CAGGATTCGTTATCAACGGGCT............................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTGCCGACGTAACCTGCC.................................................. 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCGTTCTCGAAGAAACCTGCAA................................................. 23 3 1 1.00 1 0 1 0 0 0 0
..................................................CAGGTTTAGTTAGCAACGGGCA............................................................................................ 22 2 1 1.00 1 0 0 0 1 0 0

Anti-sense strand reads

CAAATAAAAAAAATTATAGACACCTATTTTTATCATTAGATGTAACTTGAGTCCAAAGCAATCGTTGCCCGACACTACTAATTTTCTTGTTCAAGCAACAGCTGCTTTGGACGTACGATACACCTCTCCGTTGGTAAGATAACTTCTACTGACGCTTAGAATTT

************************************..(((((((......(((((((((((.((((((((((((.............)).)))))))))).)))))))))))......)))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body
......................................................................AACACTACAAATTTTCTT............................................................................ 18 2 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6328:4397456-4397619 + dmo_26 confident GTTTATTTT----TTTTAAT--------------ATCTGTGGATAA----------AAA---------TA--GTAATCTACATTGAACTCAGGTTTCGTTAGCAACGGGCTGTGATGATTA--------AAAGAACAAGTTCGTTGTCGACGAAACCTGCATGCTATGT-GGAGAGGCAACCATTC--TA--TTGAAGATGACTGCGAATCTTAAA
droVir3 scaffold_12942:51461-51599 + dvi-mir-981 Known_mirbase TTTTTA-----------AAT--------------AAG----TGTAAAGAAAAACGGAAGAGCTTTATTTA--ACAATCTACATTGAACTCAGATTTCGTCAGCAGCGGGCTGTGATGATT----------ATGAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAGTGGCAAC-----------------------------------
droGri2 scaffold_14853:795292-795390 + dgr_59 candidate-rescued GTG------------------------------------------------------------------------TTCCACATTGAGCTCGGGTTTCGTCAGCAGCGGGCTGTGATGACT---------AAAAAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAGAGTCAAC-----------------------------------
droWil2 scf2_1100000004909:4683218-4683344 + dwi_23 confident TGA---------------------------------------ACAA----------TTA---------AA--GTAATCCACACTGAAATCGGGTTTCGCTAGCAGCGGACTGTCATGATAAATGTGAAAAACAAACAAGTTCGTTGTCGACGAAACCTGCATCATGTGTCGGACAAACAGCTCTT--------------------T-T--------
dp5 XL_group1a:4258900-4259033 - dps-mir-981 Known_mirbase AAT-------------------------------ATCTAT-----------------GC---------GA--AAAATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAATA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAGAAACAACAAATG--CAACAAAA----AACTGTGA--------
droPer2 scaffold_11:835034-835152 - dpe_26 confident A--------------------------------------------------------------------------ATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAATA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAGAAACAACAAATG--CAAAAAAA----AACTGTGA--------
droAna3 scaffold_12929:1586911-1587043 + dan_9 confident ATTTAAATTATAGTTTTAAG--------------AACTGT-------------------------GTTTCATAAAGTCCTCACTGAAGCCGGGTTTCGTTAACAGCGGGCTGTCATTTCGA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAATAACAAC-----------------------------------
droBip1 scf7180000396543:52372-52472 + AA-----------------------------------------------------------------------TTATCCTCACTGAAGCCGGGTTTCGTTAACAGCGGACTGTCATTTCGA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAATGACAAC-----------------------------------
droKik1 scf7180000302398:392977-393107 + GTGTTTTCC----AATTGCTTTTCATGGCTAAATGT------CTT-----------------------AG--AAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGTCTATAA--------------TTTTAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAAACAAC-----------------------------------
droFic1 scf7180000453253:126111-126208 - A--------------------------------------------------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTTTATTGT--------TATTAGCAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAACTCAAC-----------------------------------
droEle1 scf7180000491043:308382-308502 + TTTTGA-----------TAT--------------GAT----ACTAA----------TCA---------AA--GAAGTCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTATAACC---------GTTTGACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAAAGTCAAC-----------------------------------
droRho1 scf7180000779976:18407-18508 - A--------------------------------------------------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACAAC-A--------ATTGGACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAAAATCAACAACCC------------------------------
droBia1 scf7180000301760:4274666-4274789 - TTTTAA-----------AAT--------------TAT----A--------AAACGGAAA---------TA--AAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACACTCT--------TTTCAACGAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAAC-----------------------------------
droTak1 scf7180000415704:1276939-1277046 - T-------------------------------------------AA----------GAA---------CA--AAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACGTACT--------TTTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAAC-----------------------------------
droEug1 scf7180000408994:414278-414395 - ---------------------------------------------------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTCTTTACT--------TTTCAACTAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTTAACTA--TCAACGCTAAC----T--------
dm3 chrX:1682890-1682986 - dme-mir-981 Known_mirbase ---------------------------------------------------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAAC-----------------------------------
droSim2 x:1541025-1541139 - dsi-mir-981 Known_mirbase CTGCAA------------------------------------CTTA----------GGA---------TA--AACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAAC-----------------------------------
droSec2 scaffold_10:1477765-1477870 - dse_18 confident AGG-------------------------------------------------------A---------TA--AACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAAC-----------------------------------
droYak3 X:1528074-1528170 - dya_89 confident ---------------------------------------------------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAAAAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAAC-----------------------------------
droEre2 scaffold_4644:1660965-1661061 - der_13 confident ---------------------------------------------------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAAC-----------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GTTTATTTT----TTTTAAT--------------ATCTGTGGATAA----------AAA---------TA--GTAATCTACATTGAACTCAGGTTTCGTTAGCAACGGGCTGTGATGATTA--------AAAGAACAAGTTCGTTGTCGACGAAACCTGCATGCTATGT-GGAGAGGCAACCATTC--TA--TTGAAGATGACTGCGAATCTTAAASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...........................................................................................................................................TTCGTTGTCGACGAAACCTGC........................................................2112880.00288043717986126316116
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................2212537.002537839273316007337
.........................................................................................CAGGTTTCGTTAGCAACGGGCT.........................................................................................................221334.0033442934562083
...........................................................................................................................................TTCGTTGTCGACGAAACCTG.........................................................201322.003221410809830
...........................................................................................................................................TTCGTTGTCGACGAAACCTGT........................................................211159.0015940698501
............................................................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................21186.00867801340
.........................................................................................CAGGTTTCGTTAGCAACGGGC..........................................................................................................21182.00822300770
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................23163.00632501116110
.........................................................................................CAGGTTTCGTTAGCAACGGGCC.........................................................................................................22153.00530000530
............................................................................................................................................TCGTTGTCGACGAAACCTGC........................................................20149.00494701100
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................23148.0048190111521
...........................................................................................................................................TTCGTTGTCGACGAAACCT..........................................................19143.0043200111110
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................22137.00371020790
...........................................................................................................................................TTCGTTGTCGACGAAACCTGA........................................................21121.00210021900
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................22117.0017402470
............................................................................................................................................TCGTTGTCGACGAAACCTG.........................................................19113.00131300000
..........................................................................................AGGTTTCGTTAGCAACGGGCT.........................................................................................................21111.0011111440
...........................................................................................................................................TTCGTTGTCGACGAAACC...........................................................18110.0010100090
..............................................................................................................................................GTTGTCGACGAAACCTGC........................................................1817.007101500
............................................................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................2217.007201400
.........................................................................................CAGGTTTCGTTAGCAACGGGCTT........................................................................................................2316.006001140
.............................................................................................................................................CGTTGTCGACGAAACCTGC........................................................1915.005301100
.............................................................................................................................................CGTTGTCGACGAAACCTGCA.......................................................2015.005500000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................2315.005100130
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................2215.005001400
...........................................................................................................................................TTCGTTGTCGACGAAAC............................................................1713.003000300
.........................................................................................CAGGTTTCGTTAGCAACGGG...........................................................................................................2013.003001200
...........................................................................................................................................TTCGTTGTCGACGAAACCTT.........................................................2012.002001100
..........................................................................................AGGTTTCGTTAGCAACGGGC..........................................................................................................2012.002000110
...........................................................................................................................................TTCGTTGTCGACGAAACCTGG........................................................2112.002101000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCATT.....................................................2412.002101000
..............................................................................................................................................GTTGTCGACGAAACCTGCA.......................................................1912.002002000
.........................................................................................CAGGTTTCGTTAGCAACGGGCTC........................................................................................................2312.002000020
...............................................................................................................................................TTGTCGACGAAACCTGCA.......................................................1812.002001100
...........................................................................................................................................TTCGTTGTCGACGAAACCTGAC.......................................................2211.001000010
.............................................................................................................................................CGTTGTCGACGAAACCTGCAA......................................................2111.001100000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCTGA.....................................................2411.001000100
..........................................................................................................................................GTTCGTTGTCGACGAAACCTG.........................................................2111.001100000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCATCT....................................................2511.001000100
..........................................................................................................................................GTTCGTTGTCGACGAAACCTGCA.......................................................2311.001100000
.........................................................................................CAGGTTTCGTTAGCAACGGGT..........................................................................................................2111.001000100
............................................................................................................................................TCGTTGTCGACGAAACCTGCACC.....................................................2311.001100000
............................................................................................GTTTCGTTAGCAACGGGCT.........................................................................................................1911.001000010
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCCA......................................................2311.001001000
.........................................................................................CAGGTTTCGTTAGCAACGGGCTA........................................................................................................2311.001001000
droVir3
TTTTTA-----------AAT--------------AAG----TGTAAAGAAAAACGGAAGAGCTTTATTTA--ACAATCTACATTGAACTCAGATTTCGTCAGCAGCGGGCTGTGATGATT----------ATGAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAGTGGCAAC-----------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................22110262.00102622510156324420310801000001154741281577543286308299390470143840321853202770010250010000000000102122201875870001833910331281016920221610
...........................................................................................................................................TTCGTTGTCGACGAAACCTGC........................................................2117933.0079331510733331290290467350001738527272613427231128078670020099111481441189000014000001000000100011002012349000510429000010936
...........................................................................................................................................TTCGTTGTCGACGAAACCTG.........................................................2013543.003543301553169105000000001651687317513710843073450100026728411860100600000000000000000000125000000132100010000
.........................................................................................CAGATTTCGTCAGCAGCGGGCT.........................................................................................................2212349.002349591635111602314090000191013211743161400000111141902300000130110100006265127421380491401900001505124211401
.........................................................................................CAGATTTCGTCAGCAGCGGGC..........................................................................................................211974.0097423806820100010000421200121100000321401400000200000000000010310752521100000002000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCT..........................................................191381.003812237421000000000078913510182000000110002000000000000000000000006004000000003000000010
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................231357.0035705113600000000002520612540192112101452811241030000000000000000000001190000201763520303761712
.........................................................................................CAGATTTCGTCAGCAGCGGGCC.........................................................................................................221266.002661124905000000000000000000000000000000000000000000000000000000010000000000000000000
............................................................................TCTACATTGAACTCAGATTTCGTCAGC.................................................................................................................271198.0019800000000100000000000000003300017000014700000000000000000000000000000000000000000000
............................................................................TCTACATTGAACTCAGATTTCGTCAGCA................................................................................................................281163.0016300000000000000000000000002000010000013300000000000000000000000000000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................221162.00162091501000000003283611111456000002004010000040000000000000000000010100010000000000000
.........................................................................................CAGATTTCGTCAGCAGCGGGCTT........................................................................................................231146.00146196300000010000010111027000003401020000040000000000000000000012600000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................221124.00124177510000000000150212013001002001000000000000000000000000020013000001000201000011
.........................................................................................CAGATTTCGTCAGCAGCG.............................................................................................................181111.0011129900000000000000000010000000000202000000000000000000000000005000000000000000000
......................................................................................................................TT----------ATGAACAAGTTCGTTGTCGACGA...............................................................251110.001100000000050000000000000000120001500007800000000000000000000000000000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACC...........................................................181106.0010619105000000000010100001000000000000000000000000000000001111100000000000100000000
.........................................................................................CAGATTTCGTCAGCAGCGGG...........................................................................................................20196.00961124004000000001011113200000079160131000030000000000000000000020500000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGT........................................................21186.008605200300000000690363049000002100020000010000000000000000000030000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGG............................................................................................................19178.007833610040000000000000060000000120108000005000000000000000000009200000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................23176.0076385000000000006232231220000021121000000000000000000000000020016100000000000001100
.........................................................................................CAGATTTCGTCAGCAGCGGGCG.........................................................................................................22172.007246400000000000000000000000000000000000000000000000000000000301000000000000000000
............................................................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................21166.006601600000000000012000000100000000100000000000000000000000000000000000000000000000
...................T--------------AAG----TGTAAAGAAAAACGGAAGAGC..........................................................................................................................................................25164.0064000000002600000000000000003000600002900000000000000000000000000000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................22157.005724610000000000000001000000000010000000000000000000000000000006000000000000000000
......................................................................................................................TT----------ATGAACAAGTTCGTTGTCGACGAA..............................................................26153.0053000000002000000000000000013000700003100000000000000000000000000000000000000000000
...................T--------------AAG----TGTAAAGAAAAACGGAAGAGCT.........................................................................................................................................................26145.0045000000012100000000000000003000100001900000000000000000000000000000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGGT...........................................................................................................20145.0045012000204000000000000200000000002010000000000000000000000000014800000000000000000
............................................................................................................................................TCGTTGTCGACGAAACCTGC........................................................20144.004400380000000000000100000200000000000000000000000000000000000003000000000000000000
......................................................................................................................TT----------ATGAACAAGTTCGTTGTCGACGAAA.............................................................27144.004400000000000000000000000006000200003600000000000000000000000000000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGT............................................................................................................19137.0037022100000000000100000010000001000000000010000000000000000000010000000000000000000
............................................................................TCTACATTGAACTCAGATTTCGTCA...................................................................................................................25136.003600000000000000000000000006000600002400000000000000000000000000000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGTT...........................................................................................................20133.0033016000100000000001001210000000000000000000000000000000000000011000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGG........................................................21129.002902610000000000001000000000000000000000000000000000000000000001000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGGGCTC........................................................................................................23126.00269200010000000000000010000000100202000002000000000000000000300200000010000000000
...................T--------------AAG----TGTAAAGAAAAACGGAAGAGCTT........................................................................................................................................................27125.0025000000001200000000000000001000200001000000000000000000000000000000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................23125.002511022000000000012000001000000010000000000000000000000000000001000010000000001002
.........................................................................................CAGATTTCGTCAGCAGCGGGT..........................................................................................................21121.00210520000104000001001000100000010100000000000000000000000000004000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGA........................................................21121.00210310000000000011104102000000000000000000000000000000000000007000000000000000000
..............................................................................................................................................GTTGTCGACGAAACCTGC........................................................18120.00200100000000000013112102200000000100000000000000000000000001004000000000000000000
..........................................................................................AGATTTCGTCAGCAGCGGGCT.........................................................................................................21119.001901400000000000010000000000000000101000000000000000000000000002000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGGGCTTA.......................................................................................................24116.001601600000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTT.........................................................20114.00140140000000000000001102100000000000000000000000000000000001003000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGGTT..........................................................................................................21113.00130300000001000000000000000000100001000000000000000000000000007000000000000000000
..............................................................................................................................................GTTGTCGACGAAACCTGCA.......................................................19112.00120000000000000010011001200000001100000001000000000000000000003000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGTA...........................................................................................................20110.00100500000000000000100000000000000000000000000000000000000000004000000000000000000
............................................................................................................................................TCGTTGTCGACGAAACCTG.........................................................19110.00100090000000000000000000000000000000000000000000000000000000001000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCC..........................................................1919.0090900000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TT----------ATGAACAAGTTCGTTGTCGACG................................................................2419.0090000000000000000000000000200010000600000000000000000000000000000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGGGCTTC.......................................................................................................2418.0080700000000000000000000000000000000000000000000000000000000001000000000000000000
...............................................................................................................................................TTGTCGACGAAACCTGCA.......................................................1818.0080500000000000000000000000000001100000000000000000000000000001000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGGGCTA........................................................................................................2318.0080600000000000010000000000000000000000000000000000000000000000000000010000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAG......................................................2317.0070310000000000000100000000000000100000000000000000000000000001000000000000000000
.............................................................................................................................................CGTTGTCGACGAAACCTGCA.......................................................2017.0071030000000000000000000000000110000000000000000000000000000001000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCT.............................................................................................................1817.0070700000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TCTACATTGAACTCAGATTTCGTCAG..................................................................................................................2616.0060000000010000000000000000000020000300000000000000000000000000000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGTTT..........................................................................................................2136.001805000000000000000000000000000000000000000000000000000000000011200000000000000000
...................................................................................................................................TGAACAAGTTCGTTGTCGACGAAACC...........................................................2616.0060000000000000000000000000000000000600000000000000000000000000000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGGGCTGT.......................................................................................................2416.0060600000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TT----------ATGAACAAGTTCGTTGTCGACGAAAC............................................................2815.0050000000000000000000000000000000000500000000000000000000000000000000000000000000
............................................................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................2215.0050300000000000010000000000000000000000000000000000000000000000000000001000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTC.........................................................2015.0050000000000000000000000100000000000000000000000000000000000004000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGGC...........................................................................................................2015.0050300000000000000000000000000000000000000000000000000000000002000000000000000000
......................................................................................................................TT----------ATGAACAAGTTCGTTGTCGACGAAACC...........................................................2915.0050000000000000000000000000400000000100000000000000000000000000000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGGGA..........................................................................................................2114.0040200000000000000000100000000000000000000000000000000000000001000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGGGG..........................................................................................................2114.0040400000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGA............................................................................................................1914.0040100000000000000000000000000000000000000000000000000000000003000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAAC............................................................1714.0040000000000000000000000000000000000000000000000000000000000004000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCATT.....................................................2414.0040101000000000000000000000000000000000000000000000000000000001000000000100000000
..................AT--------------AAG----TGTAAAGAAAAACGGAAGAGC..........................................................................................................................................................2614.0040000000010000000000000000000010000200000000000000000000000000000000000000000000
......................................................................................................................TT----------ATGAACAAGTTCGTTGTCGA..................................................................2213.0030000000000000000000000000000000000300000000000000000000000000000000000000000000
........................................................................................TCAGATTTCGTCAGCAGCGGGC..........................................................................................................2213.0030200000000000000000010000000000000000000000000000000000000000000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGGTG..........................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000003000000000000000000
.............................................................................................................................................CGTTGTCGACGAAACCTG.........................................................1813.0030020000000000000000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCCC......................................................2313.0031000000000000000000000000000110000000000000000000000000000000000000000000000000
..........................................................................................AGATTTCGTCAGCAGCGGGCTT........................................................................................................2213.0030100000000000000000000000000000000000000000000000000000000001100000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTA.........................................................2013.0030110000000000000000000100000000000000000000000000000000000000000000000000000000
......................................................................................................................TT----------ATGAACAAGTTCGTTGTCGAC.................................................................2313.0030000000000000000000000000100000000200000000000000000000000000000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCCA......................................................2313.0030000000000000010001000000000000000100000000000000000000000000000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGGGAC.........................................................................................................2212.0020100000000000000000010000000000000000000000000000000000000000000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGGA...........................................................................................................2012.0020100000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................CATTGAACTCAGATTTCGTCAGCAGC..............................................................................................................2612.0020000000000000000000000000000000000200000000000000000000000000000000000000000000
...............................................................................................................GTGATGATT----------ATGAACAAG.............................................................................1812.0020000000000000001000000000000000100000000000000000000000000000000000000000000000
............................................................................TCTACATTGAACTCAGATTTCGTC....................................................................................................................2412.0020000000000000000000000000100000000100000000000000000000000000000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCTA......................................................2312.0020000000020000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGGGCTAA.......................................................................................................2412.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGGTA..........................................................................................................2112.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGGGCA.........................................................................................................2212.0020100000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................................................ATTTCGTCAGCAGCGGGCT.........................................................................................................1912.0020010000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................................TCAGATTTCGTCAGCAGCGGGCT.........................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000002000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCGC.........................................................2012.0020000000000000000000000000000000000000000000000000000000000002000000000000000000
..............................................................................................................................................GTTGTCGACGAAACCTGCT.......................................................1912.0020000000000000010000000000000010000000000000000000000000000000000000000000000000
.........................................TGTAAAGAAAAACGGAAGAGCTTTA......................................................................................................................................................2512.0020000000020000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CAGATTTCGTCAGCAGCGGGCTG........................................................................................................2312.0020110000000000000000000000000000000000000000000000000000000000000000000000000000
droGri2
GTG------------------------------------------------------------------------TTCCACATTGAGCTCGGGTTTCGTCAGCAGCGGGCTGTGATGACT---------AAAAAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAGAGTCAAC-----------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................221105.001051050
...........................................................................................................................................TTCGTTGTCGACGAAACCTGC........................................................21183.0083794
...........................................................................................................................................TTCGTTGTCGACGAAACCTG.........................................................20131.0031310
............................................................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................21110.0010100
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................2316.00660
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................2214.00440
............................................................................................................................................TCGTTGTCGACGAAACCTGC........................................................2013.00330
...........................................................................................................................................TTCGTTGTCGACGAAACCT..........................................................1913.00330
............................................................................................................................................TCGTTGTCGACGAAACCTG.........................................................1913.00330
............................................................................................................................................TCGTTGTCGACGAAACCTGCAT......................................................2212.00220
.............................................................................................................................................CGTTGTCGACGAAACCTGC........................................................1912.00220
..........................................................................................................................................GTTCGTTGTCGACGAAACCTGCA.......................................................2311.00110
...........................................................................................................................................TTCGTTGTCGACGAAACC...........................................................1811.00110
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCACT.....................................................2411.00110
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................2311.00110
droWil2
TGA---------------------------------------ACAA----------TTA---------AA--GTAATCCACACTGAAATCGGGTTTCGCTAGCAGCGGACTGTCATGATAAATGTGAAAAACAAACAAGTTCGTTGTCGACGAAACCTGCATCATGTGTCGGACAAACAGCTCTT--------------------T-T--------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...........................................................................................................................................TTCGTTGTCGACGAAACCTGC........................................................21118076.001807644012001826113196
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................2219560.0095606753685106281484
...........................................................................................................................................TTCGTTGTCGACGAAACCTG.........................................................2015515.00551552657205173
.........................................................................................CGGGTTTCGCTAGCAGCGGACT.........................................................................................................2212100.00210055320604941
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................231784.007846443201989
...........................................................................................................................................TTCGTTGTCGACGAAACCT..........................................................191432.00432402100020
...........................................................................................................................................TTCGTTGTCGACGAAACC...........................................................181326.003263250001
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................221196.001961881124
.........................................................................................CGGGTTTCGCTAGCAGCGGAC..........................................................................................................211170.0017014700815
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................231122.001221211000
........................................................................................TCGGGTTTCGCTAGCAGCGGACT.........................................................................................................231109.001093301867
...........................................................................................................................................TTCGTTGTCGACGAAACCTGA........................................................21182.00821020070
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................22178.0078740004
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................23175.00752650440
............................................................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................21168.0068658004
........................................................................................TCGGGTTTCGCTAGCAGCGGAC..........................................................................................................22166.00664500021
...........................................................................................................................................TTCGTTGTCGACGAAACCTGT........................................................21157.00571500141
...........................................................................................................................................TTCGTTGTCGACGAAACCTGG........................................................21151.0051490002
.........................................................................................CGGGTTTCGCTAGCAGCGGACC.........................................................................................................22147.0047440012
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................22142.0042331008
............................................................................................................................................TCGTTGTCGACGAAACCTGC........................................................20135.00352170016
..............................................................................................................................................GTTGTCGACGAAACCTGCA.......................................................19125.0025500020
..............................................................................................................................................GTTGTCGACGAAACCTGC........................................................18123.0023300119
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAG......................................................23121.0021180003
..........................................................................................GGGTTTCGCTAGCAGCGGACT.........................................................................................................21120.0020000515
.............................................................................................................................................CGTTGTCGACGAAACCTGC........................................................19118.0018400014
...............................................................................................................................................TTGTCGACGAAACCTGCA.......................................................18114.0014130001
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA.....................................................24114.0014130001
........................................................................................TCGGGTTTCGCTAGCAGCGGA...........................................................................................................21113.0013000013
.........................................................................................CGGGTTTCGCTAGCAGCGGACG.........................................................................................................22112.0012120000
...............................................................................................................................................TTGTCGACGAAACCTGCAA......................................................1918.00880000
.............................................................................................................................................CGTTGTCGACGAAACCTGCA.......................................................2018.00831004
...........................................................................................................................................TTCGTTGTCGACGAAACCTC.........................................................2017.00701015
..............................................................................................................................................GTTGTCGACGAAACCTGCAA......................................................2016.00640002
...............................................................................................................GTCATGATAAATGTGAAAAACA...................................................................................2216.00620004
...........................................................................................................................................TTCGTTGTCGACGAAACCC..........................................................1925.5011110000
............................................................................................................................................TCGTTGTCGACGAAACCTG.........................................................1915.00503002
...........................................................................................................................................TTCGTTGTCGACGAAACCG..........................................................1914.00440000
..........................................................................................................................................GTTCGTTGTCGACGAAACCTGCC.......................................................2314.00440000
.........................................................................................CGGGTTTCGCTAGCAGCGGA...........................................................................................................2014.00400004
..........................................................................................................................................GTTCGTTGTCGACGAAACCTGC........................................................2213.00300030
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCACT.....................................................2413.00330000
............................................................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................2213.00320001
..........................................................................................................................................GTTCGTTGTCGACGAAACCTGCT.......................................................2313.00330000
........................................................................................TCGGGTTTCGCTAGCAGCGG............................................................................................................2013.00310002
........................................................................................TCGGGTTTCGCTAGCAGCGGACC.........................................................................................................2312.00220000
.........................................................................................CGGGTTTCGCTAGCAGCGGAA..........................................................................................................2112.00200002
.............................................................................................TTTCGCTAGCAGCGGACT.........................................................................................................1812.00220000
...............................................................................................................................................TTGTCGACGAAACCTGCAT......................................................1912.00220000
........................................................................................TCGGGTTTCGCTAGCAGCGGAT..........................................................................................................2212.00200002
...........................................................................................................................................TTCGTTGTCGACGAAACCTCA........................................................2112.00201010
.............................................................................................TTTCGCTAGCAGCGGACC.........................................................................................................1811.00110000
...............................................................................................................................................TTGTCGACGAAACCTGCGA......................................................1911.00110000
...............................................................................................................GTCATGATAAATGTGAAA.......................................................................................1811.00110000
dp5
AAT-------------------------------ATCTAT-----------------GC---------GA--AAAATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAATA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAGAAACAACAAATG--CAACAAAA----AACTGTGA--------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...........................................................................................................................................TTCGTTGTCGACGAAACCTGC........................................................21111733.001173321527144774616518701100268
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................2219261.009261220469095098194789301219
...........................................................................................................................................TTCGTTGTCGACGAAACCTG.........................................................2012235.00223551263672802290004
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................231430.004301863722856100012
...........................................................................................................................................TTCGTTGTCGACGAAACCT..........................................................191407.0040726823110240000
.........................................................................................CGGGTTTCGTTAACAGCGGGCT.........................................................................................................221291.00291125919148584000
...........................................................................................................................................TTCGTTGTCGACGAAACC...........................................................181285.00285019275000000
............................................................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................211185.00185017608010000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGT........................................................211157.0015701502801131000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................231154.0015401801091240002
............................................................................................................................................TCGTTGTCGACGAAACCTGC........................................................201143.00143013802030000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................221140.0014001241004180002
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................221129.00129043994190000
............................................................................................................................................TCGTTGTCGACGAAACCTG.........................................................191125.00125012401000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................231112.0011207794040000
...........................................................................................................................................TTCGTTGTCGACGAAACCC..........................................................19146.004600046000000
.........................................................................................CGGGTTTCGTTAACAGCGGGC..........................................................................................................21127.002700231370002
.........................................................................................CGGGTTTCGTTAACAGCGGGCC.........................................................................................................22123.002300167000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGA........................................................21118.001804040100000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAG......................................................23118.00180223030008
...........................................................................................................................................TTCGTTGTCGACGAAACCTT.........................................................20115.001501002030000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGG........................................................21113.001301010200000
.........................................................................................CGGGTTTCGTTAACAGCGGG...........................................................................................................20112.00120002190000
............................................................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................22112.001201001010000
.............................................................................................................................................CGTTGTCGACGAAACCTGCA.......................................................20110.00100900010000
.............................................................................................................................................CGTTGTCGACGAAACCTGC........................................................19110.00100603000001
............................................................................................................................................TCGTTGTCGACGAAACCT..........................................................1818.0080800000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCATT.....................................................2417.0070114000001
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................2217.0070401020000
..............................................................................................................................................GTTGTCGACGAAACCTGC........................................................1817.0070201220000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGTT.......................................................2216.0060201030000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA.....................................................2415.0050013010000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCCA......................................................2315.0050103010000
..............................................................................................................................................GTTGTCGACGAAACCTGCA.......................................................1915.0050001100003
............................................................................................................................................TCGTTGTCGACGAAACCTGT........................................................2013.0030300000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTA.........................................................2013.0030100020000
.............................................................................................................................................CGTTGTCGACGAAACCTG.........................................................1812.0020200000000
..........................................................................................GGGTTTCGTTAACAGCGGGCT.........................................................................................................2112.0020000110000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCCC......................................................2312.0020101000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGAC.......................................................2212.0020011000000
............................................................................................................................................TCGTTGTCGACGAAACCTGCC.......................................................2112.0020200000000
............................................................................................................................................TCGTTGTCGACGAAACCTGCAC......................................................2212.0020200000000
.........................................................................................CGGGTTTCGTTAACAGCGG............................................................................................................1912.0020000011000
...........................................................................................................................................TTCGTTGTCGACGAAACCTC.........................................................2011.0010001000000
droPer2
A--------------------------------------------------------------------------ATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAATA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAGAAACAACAAATG--CAAAAAAA----AACTGTGA--------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...........................................................................................................................................TTCGTTGTCGACGAAACCTGC........................................................2113596.0035962637411113461630109
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................2211470.001470126287505164883
...........................................................................................................................................TTCGTTGTCGACGAAACCTG.........................................................201616.006162426011341970
.........................................................................................CGGGTTTCGTTAACAGCGGGCT.........................................................................................................221342.0034214112475983
...........................................................................................................................................TTCGTTGTCGACGAAACCTGT........................................................211202.00202090351517
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................231114.001142515030440
...........................................................................................................................................TTCGTTGTCGACGAAACCT..........................................................19147.004712209150
.........................................................................................CGGGTTTCGTTAACAGCGGGC..........................................................................................................21144.004418027170
............................................................................................................................................TCGTTGTCGACGAAACCTGC........................................................20144.00440410210
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................23137.003715115141
............................................................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................21130.00300270030
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................22130.00301300980
............................................................................................................................................TCGTTGTCGACGAAACCTG.........................................................19125.00251230100
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................22124.00241141350
.........................................................................................CGGGTTTCGTTAACAGCGGG...........................................................................................................20120.00200006113
...........................................................................................................................................TTCGTTGTCGACGAAACCTGA........................................................21119.00190107101
.........................................................................................CGGGTTTCGTTAACAGCGGGCC.........................................................................................................22111.0011900101
..............................................................................................................................................GTTGTCGACGAAACCTGCA.......................................................1919.009210222
.............................................................................................................................................CGTTGTCGACGAAACCTGC........................................................1918.008020600
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................2317.007120220
...........................................................................................................................................TTCGTTGTCGACGAAACCTGG........................................................2117.007230110
.........................................................................................CGGGTTTCGTTAACAGCGGGCG.........................................................................................................2216.006600000
..............................................................................................................................................GTTGTCGACGAAACCTGC........................................................1815.005001220
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................2215.005200120
...........................................................................................................................................TTCGTTGTCGACGAAACCTCT........................................................2114.004000220
.........................................................................................CGGGTTTCGTTAACAGCGG............................................................................................................1913.003000030
............................................................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................2213.003020100
..........................................................................................GGGTTTCGTTAACAGCGGGCT.........................................................................................................2113.003001020
...........................................................................................................................................TTCGTTGTCGACGAAACCTTT........................................................2112.002010010
.........................................................................................CGGGTTTCGTTAACAGCG.............................................................................................................1812.002000020
.........................................................................................CGGGTTTCGTTAACAGCGGGT..........................................................................................................2112.002000110
...........................................................................................................................................TTCGTTGTCGACGAAACC...........................................................1812.002200000
.............................................................................................................................................CGTTGTCGACGAAACCTGCA.......................................................2012.002010010
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA.....................................................2412.002000110
...........................................................................................................................................TTCGTTGTCGACGAAACCTGTT.......................................................2212.002000110
........................................................................................TCGGGTTTCGTTAACAGCGGGC..........................................................................................................2212.002000110
............................................................................................................................................TCGTTGTCGACGAAACCT..........................................................1812.002020000
...........................................................................................................................................TTCGTTGTCGACGAAACCTT.........................................................2012.002000200
.........................................................................................CGGGTTTCGTTAACAGCGGT...........................................................................................................2012.002000020
...........................................................................................................................................TTCGTTGTCGACGAAACCTGTC.......................................................2211.001000100
...........................................................................................................................................TTCGTTGTCGACGAAACCTGGC.......................................................2211.001010000
...........................................................................................................................................TTCGTTGTCGACGAAACCTCA........................................................2111.001010000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGTTC......................................................2311.001000010
...............................................................................................................GTTATGAATA--------AATCAACAAG.............................................................................2011.001000010
...........................................................................................................................................TTCGTTGTCGACGAAACCTC.........................................................2011.001000010
droAna3
ATTTAAATTATAGTTTTAAG--------------AACTGT-------------------------GTTTCATAAAGTCCTCACTGAAGCCGGGTTTCGTTAACAGCGGGCTGTCATTTCGA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAATAACAAC-----------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...........................................................................................................................................TTCGTTGTCGACGAAACCTGC........................................................21120626.0020626831139539455018608
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................2212509.002509120527193614659
...........................................................................................................................................TTCGTTGTCGACGAAACCTG.........................................................201964.00964451201782331
.........................................................................................CGGGTTTCGTTAACAGCGGGCT.........................................................................................................221670.0067012312292603
...........................................................................................................................................TTCGTTGTCGACGAAACCTGT........................................................211318.003185001146193
...........................................................................................................................................TTCGTTGTCGACGAAACCTGA........................................................211224.0022400070217
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................231162.001623039120072
............................................................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................211131.0013113100000
...........................................................................................................................................TTCGTTGTCGACGAAACCT..........................................................191130.00130292075024
............................................................................................................................................TCGTTGTCGACGAAACCTGC........................................................201108.0010895000013
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................23164.0064112021426
.........................................................................................CGGGTTTCGTTAACAGCGGGC..........................................................................................................21160.00601304052
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................22137.00377118020
............................................................................................................................................TCGTTGTCGACGAAACCTG.........................................................19131.00313100000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................22121.0021510708
..............................................................................................................................................GTTGTCGACGAAACCTGC........................................................18117.00171000016
..........................................................................................GGGTTTCGTTAACAGCGGGCT.........................................................................................................21115.00150020013
...........................................................................................................................................TTCGTTGTCGACGAAACCTT.........................................................20114.0014300407
...........................................................................................................................................TTCGTTGTCGACGAAACCTGG........................................................21114.00141001012
.............................................................................................................................................CGTTGTCGACGAAACCTGCA.......................................................20111.00111100000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................22110.0010500401
...........................................................................................................................................TTCGTTGTCGACGAAACC...........................................................18110.0010090001
...........................................................................................................................................TTCGTTGTCGACGAAACCTC.........................................................2019.009000009
.........................................................................................CGGGTTTCGTTAACAGCGGGCC.........................................................................................................2219.009080001
.............................................................................................................................................CGTTGTCGACGAAACCTGC........................................................1919.009600003
.........................................................................................CGGGTTTCGTTAACAGCGGG...........................................................................................................2018.008000008
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAG......................................................2316.006100203
.........................................................................................CGGGTTTCGTTAACAGCG.............................................................................................................1814.004000103
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................2314.004040000
.............................................................................................................................................CGTTGTCGACGAAACCTG.........................................................1814.004400000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA.....................................................2414.004130000
............................................................................................................................................TCGTTGTCGACGAAACCT..........................................................1813.003300000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGTT.......................................................2213.003000201
............................................................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................2213.003300000
............................................................................................................................................TCGTTGTCGACGAAACCTGT........................................................2012.002100100
...........................................................................................................................................TTCGTTGTCGACGAAACCTTA........................................................2112.002000002
...........................................................................................................................................TTCGTTGTCGACGAAAC............................................................1712.002000200
...........................................................................................................................................TTCGTTGTCGACGAAACCC..........................................................1912.002000002
..........................................................................................................................................GTTCGTTGTCGACGAAACCTGCA.......................................................2312.002200000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAAT.....................................................2412.002100001
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCATTAG...................................................2612.002000002
.........................................................................................CGGGTTTCGTTAACAGCGGT...........................................................................................................2011.001000010
...........................................................................................................................................TTCGTTGTCGACGAAACCTGGT.......................................................2211.001000001
.........................................................................................CGGGTTTCGTTAACAGCGGGA..........................................................................................................2111.001000001
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCATT.....................................................2411.001000100
............................................................................................................................................TCGTTGTCGACGAAACCTGCAT......................................................2211.001000100
......................................................................................................................................ACAAGTTCGTTGTCGACGAAACCTGC........................................................2611.001000001
droBip1
AA-----------------------------------------------------------------------TTATCCTCACTGAAGCCGGGTTTCGTTAACAGCGGACTGTCATTTCGA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAATGACAAC-----------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GTGTTTTCC----AATTGCTTTTCATGGCTAAATGT------CTT-----------------------AG--AAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGTCTATAA--------------TTTTAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAAACAAC-----------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
A--------------------------------------------------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTTTATTGT--------TATTAGCAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAACTCAAC-----------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTTTGA-----------TAT--------------GAT----ACTAA----------TCA---------AA--GAAGTCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTATAACC---------GTTTGACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAAAGTCAAC-----------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
A--------------------------------------------------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACAAC-A--------ATTGGACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAAAATCAACAACCC------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TTTTAA-----------AAT--------------TAT----A--------AAACGGAAA---------TA--AAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACACTCT--------TTTCAACGAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAAC-----------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
T-------------------------------------------AA----------GAA---------CA--AAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACGTACT--------TTTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAAC-----------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
---------------------------------------------------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTCTTTACT--------TTTCAACTAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTTAACTA--TCAACGCTAAC----T--------SizeHit CountTotal NormTotal
No Reads
dm3
---------------------------------------------------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAAC-----------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................221126486.00126486000077021131477221461804000472390000600067710441104023111200010000000000001010007240000000000000000066342222194271192279080515687501393710114546640132442175295507728306763312962583218267671263101332121153661482109611448446829511392812751041378125000000020015130300100100000000000000061845405035351372857449711044268840201266683010000078901808000060600000000000000000132112130210370031138005965055430131064374115121671000282200120367280018343227100104302050200218415823541915181314216382000167022560003022100011200231146740601023400
...........................................................................................................................................TTCGTTGTCGACGAAACCTGC........................................................211114701.0011470100005083010533270723020970000504147178296923781680000000101000000100000112000000000000000001010870701360111717127711877293458035111181754112109981621563585040101471315263522911534121131800209909692646938738577495900000000009135000100300000000000000036803390019532052873272482321081472145677968600000823154125000018019000000000000000003601400000000500110000132201242725651713142471873912125455109638140030183271085361061007254101001008011218925512198481543159365220020217112421602001247140011169068393161478121920014800
...........................................................................................................................................TTCGTTGTCGACGAAACCTG.........................................................20124654.002465400005400000030014005600005000219359739196600000000000000000000001100000000000000000000002466200007421523113057214170148226530082686391142180565102716612310441364835160000000000000000000000000000000000001679175407105479111234010892622009308417600000239860100005000000000000000000000020000000000000000210161553000463151220000241000001110223100000000000010013013715435801331100005024000000000000000019600100000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................2318318.008318000076101170132010022300000000000000000000000000000000000000000000000000000000021211251617710152873131328340892510253161265840094983755110612028131951501401412340714854800000000002000000000000000000000000051048202311010024471734210032612000002783000000000000000000000000000100000000005005915002001200100191022110000012001010100192500002110100000002912216703322000004041000000000002002006500000000100
.........................................................................................CGGGTTTCGTTAGCAGCGGGCT.........................................................................................................2216481.006481000020010000000000000000010540000000000000000000000000003000000000000000000000001110340070125241500217125600001233032610223101111810300209140000000000120371000000005000000000000335102895202812175652995200000747060000109000000000000000001001000000015013000055540155740142840101010294201004501201549311001667170023006474202481082181802485012105022351530123135040333943665241477275103972913186432182641042041400
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCATC.....................................................2415384.005384000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033752008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCT..........................................................1913437.003437000000000000000000100000010018731603300000000000000000000000000000000000000000000007000000011037305341212201353100045144200030201422132101043698105000000000000000000000000000000000000383465022301146993518168114230000055000000000000000000000000000000000000000000000000002150000080000000400000000010100000000000000009413340010000000000000000000000000000800000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................2211906.001906000000000000001000000000000000000000000000000000000000000000000000000000000000006601020030013511512311200032100011310010001728016622908422020711225174000000000000000000000000000000000000182740531011002060700000013000000000000000000000000000000000000000000000001003360000432020000210000202006120000000000000000100111100000000101000000000000000000100000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................2311898.0018980000250000001002000500000000000000000000000000000000000000110000000000000000010002000010020068701398640281556200013046016100001411060972503312813000000000010000000000000000000000000112105051002632430331331000009000000000000000000000000000000000000000100017100000011702102910907000011600001010080100000000000000011418143400011000003020000000100000000006500100000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGT........................................................2111347.001347000016000000100010000000000000000000000000000000000000000000000000000000000000000390000000100540122110000820003110001000422150140641002511624000000000000000000000000000000000000384302400264415629206710000097300000000100000000000000000000000000000000000000001261000668080000011000011000311000020000000000048294791001000000030030000000000001010113100000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................2211044.0010440000300000000000012000000000000000000000000000000000000000000000000000000000120010031300067111930537110103200100227530101140156020516016123900000000000000000000000000000000000080720420011511921703300000070000000100000000000000000000000000000000000110001012200041300000000000020000601000000000000000012240200000000100000000000000000000700000000000
.........................................................................................CGGGTTTCGTTAGCAGCGGGC..........................................................................................................211823.008230000000000000003000000000003100000000000000000000000000000000000000000000000000000000001000000000000000000000000000011000010000000000000000010800000000000000000000006202450153115000000002020000002000000000000001000000000000000071000024035710012501002044110167010064250001000000000220311417323901310000012023100003515180411703860212210021361200
...........................................................................................................................................TTCGTTGTCGACGAAACCTGA........................................................211692.00692000025000110200000010000000000000000000000000000000000000000000000000000000000000200000010003031301001054000220300000021521061017102509061000000000000000000000000000000000000021230120011260151440700000006100000000000000000000000000000000000000000000100000113000031803000009000000000000000000001000000016623160000000000200000000000000000000500000000000
............................................................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................211633.006330000400000010000000000000000000000000000000000000000000000000000000000000000000011000100730219085603002216100022710051200087010125012091400000000000000000000000000000000000043250150027270370801200000042000000000000000000000000000000000000000000000000000300001300000001000010000000000000000000000002220001000000100000000000000000000300000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................221436.00436000010101010400200030000000000000000000000000000000000000000000000000000000000001161012002001300119031125850002610071110184010111040710000000000000000000000000000000000003030016005110801003410000023000000000000000000000000000000000000000000000000000200003302000001000000000003000000000000000025140000000000000000000000000000000100000000000
............................................................................................................................................TCGTTGTCGACGAAACCTGC........................................................201362.0036200002000000000000000000000001000000000000000000000000000000000000000000000000000200000030003002300001042000000100000323220707515070640000000000000000000000000000000000001631070019230221807000000220000000000000000000000000000000000000000000000000009000021101000003000000000000000000000000000042640000000000000000000000000000000500000000000
.........................................................................................CGGGTTTCGTTAGCAGCGGG...........................................................................................................201287.00287000000000000000000000000010000010110000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000140110012000701000000000000010000000000000000000000000000000110000000000010001601000000000019000030210000000000000000342121000160000010000000003300253171112811201010000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................231276.002760000200000010000001000000000000000000000000000000000000000000000000000000000000080000002000903150100019000001001600000204000105050613000000000000000000000000000000000000191501000250203060000006000000000000000000000000000000000000000000022000000000000300000000000001000001000000000000000010020000000000100000000000000000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACC...........................................................181239.00239000000000000000000000000000031220300000000000000000000000100000000000000000000002000000000060029000000471000500000000030000000039820000000000000000000000000000000000001140210622231815160000036000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTT.........................................................201229.0022900000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000310000000324128210000000000000000000000000000000000001080500000101010000003000000000000000000000000000000000000000000000000000100000200000000000000000000000000000000000000060000000000000000000000000000000000000000000
............................................................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................221202.002020000200000000000000000000000000000000000000000000000000000000000000000000000000030000004003110142211207300001804040130010000000020100000000000000000000000000000000000001060500530704010000007100000000000000000000000000000000000000000000000000000000301000011000000000100000000000000000001100000000100000000000000000000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGG........................................................211195.00195000030000000001000000000000000000000000000000000000000000000000000000000000000001200000000007003000000700000000100000280100123000230000000000000000000000000000000000001260600750201902930000017000000000000000000000000000000000000000000000000000400002700000003000000000000000000000000000012220000000000000000000000000010000000000000000
..............................................................................................................................................GTTGTCGACGAAACCTGC........................................................181169.0016900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000321060245010310000000000000000000000000000000000008130500970400010000003100100000000000000000000000000000000000000000000100050000040000000100000000000000000000000000000441100000000000000000000000000000100400000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA.....................................................241163.0016300001000000000000010000000000000000000000000000000000000000000000000000000000000200000000003011500010039100080102000002000000000040000000000000000000000000000000000000121305001408080120000005000000000000000000000000000000000000000000011000000000003101000002000000000000000000000000000010100100000000100000000000000000000100000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCCA......................................................231140.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000400000020006011300000020000000000000122001000002322370000000000000000000000000000000000001570400000000000000000000000000000000000000000000000000000000000000000000200000500000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TCGGGTTTCGTTAGCAGCGGGC..........................................................................................................221137.00137000000000000000100000000000014011000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000000000000121016011110000000000000000000000000000000000000000000000001000000000030000020000001000000110000000000000000000001174401100000002010000000100000302025400010000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAG......................................................231113.0011300003000010000000000000000000000000000000000000000000000000000000000000000000000100000020101009010000240000110302010000300000002001000000000000000000000000000000000000690300200014080000002000000000100000000000000000000000000000000101000000000001101000000000000000200000000000000000000100000000000000000000000000000000300000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGTT.......................................................221106.0010600000000000000000000000000000000000000000000000000000000000000000000000000000000240000000000600000000005000010000000000000000001021000000000000000000000000000000000000030100020300020000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGATC......................................................231106.0010600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004660000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TCGTTGTCGACGAAACCTG.........................................................19198.009800000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000002000000120000000000000010000000031300000000000000000000000000000000000001570100411214040200000013000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000100000000000
..............................................................................................................................................GTTGTCGACGAAACCTGCA.......................................................19187.008700000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000500001010100100000000000000000000000000000000000058061071307000000000013000000000000000000000000000000000000000000000000100001000000000000000000000200000130000000000002140100000000000000000000000000000000000000000
.........................................................................................CGGGTTTCGTTAGCAGCG.............................................................................................................18179.007900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000100000000000000000000000000000000000000000000000000001000000010000000100000000000000000000000000000000000000000000000000000000000000000000007000024010000000000000000221100204000000000000000020000000012200000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTC.........................................................20168.00680000100000000000000000000000000000000000000000000000000000000000000000000000000030000000000100100000000000000000000020000000021530000000000000000000000000000000000006803005302010420000014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTA.........................................................20161.0061000030000000000000000000000000000000000000000000000000000000000000000000000000004000000000030000000005000000000000002010000000011000000000000000000000000000000000000540400040325030000008000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000001010000000000000000000000000000000000000000000
..........................................................................................GGGTTTCGTTAGCAGCGGGCT.........................................................................................................21158.00580000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000000000000000302001010000000000010000000000000000000000000000000000000000000000000000000000000000000000101001000000100000000000432125000000002021000100000001403001200000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCTA......................................................23152.00520000000000000000000000000000000000000000000000000000000000000000000000000000000040000000100100130000019000110001000001000000101010000000000000000000000000000000000000360500000000000000001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAAT.....................................................24152.0052000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000030000001300002000000000110000000000100000000000000000000000000000000000010000000000100000000000000000000000000000000000000000000000000001213000000000001100000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................................CGTTGTCGACGAAACCTGCA.......................................................20148.0048000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020013204000000000000000000000000000000000000000000000000000000000000000320200330500010000006000000000000000000000000000000000000000000000002000000000000000000000000000011000030000000000000210000000000000000000000000000000000000000000
droSim2
CTGCAA------------------------------------CTTA----------GGA---------TA--AACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAAC-----------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...........................................................................................................................................TTCGTTGTCGACGAAACCTG.........................................................20119993.001999319743574731410800200100000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGC........................................................2119626.0096269295346554112001814012308002
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................2217704.0077047016503825022010526505906001
...........................................................................................................................................TTCGTTGTCGACGAAACCT..........................................................1913350.00335029028481441100000000102
.........................................................................................CGGGTTTCGTTAGCAGCGGGCT.........................................................................................................2211660.001660113054080060000011001000
...........................................................................................................................................TTCGTTGTCGACGAAACC...........................................................1811162.0011629602130917800000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................231893.0089384124520000020100000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................221429.004294192700000010000000
.........................................................................................CGGGTTTCGTTAGCAGCGGGC..........................................................................................................211328.0032827943500800000200000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................221286.0028625732600000000000000
.........................................................................................CGGGTTTCGTTAGCAGCGGGCC.........................................................................................................221226.0022617704900000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................231172.001721670410000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGG........................................................211154.001541500310000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................221131.001311212700000000100000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................231100.00100940010400000100000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGT........................................................211100.00100972010000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGA........................................................21174.0074740000000000000000
........................................................................................TCGGGTTTCGTTAGCAGCGGGC..........................................................................................................22173.0073710100000000100000
.........................................................................................CGGGTTTCGTTAGCAGCGGGCG.........................................................................................................22155.00553402100000000000000
...............................................................................................................................................TTGTCGACGAAACCTGCA.......................................................18136.0036321300000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCG..........................................................19132.0032320000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCC..........................................................19232.0064640000000000000000
............................................................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................21129.0029210240200000000000
............................................................................................................................................TCGTTGTCGACGAAACCTGC........................................................20126.0026210040100000000000
............................................................................................................................................TCGTTGTCGACGAAACCTG.........................................................19123.0023221000000000000000
...............................................................................................................................................TTGTCGACGAAACCTGCAA......................................................19121.0021210000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAG......................................................23121.0021200100000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA.....................................................24119.0019160100000110000000
..............................................................................................................................................GTTGTCGACGAAACCTGCA.......................................................19119.0019190000000000000000
............................................................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................22117.0017160100000000000000
.........................................................................................CGGGTTTCGTTAGCAGCG.............................................................................................................18116.0016000021400000000000
.............................................................................................................................................CGTTGTCGACGAAACCTG.........................................................18113.0013130000000000000000
..............................................................................................................................................GTTGTCGACGAAACCTGC........................................................18111.0011110000000000000000
.........................................................................................CGGGTTTCGTTAGCAGCGG............................................................................................................19110.0010000001000000000000
............................................................................................................................................TCGTTGTCGACGAAACCT..........................................................1819.00950000400000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCATT.....................................................2419.00990000000000000000
.........................................................................................CGGGTTTCGTTAGCAGCGGGCTT........................................................................................................2318.00880000000000000000
.............................................................................................................................................CGTTGTCGACGAAACCTGC........................................................1917.00750000100000100000
.............................................................................................................................................CGTTGTCGACGAAACCTGCA.......................................................2017.00770000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTT.........................................................2017.00760010000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTC.........................................................2017.00770000000000000000
.........................................................................................CGGGTTTCGTTAGCAGCGGGCTA........................................................................................................2315.00511200000000100000
...........................................................................................................................................TTCGTTGTCGACGAAACT...........................................................1815.00550000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCACT.....................................................2415.00550000000000000000
.............................................................................................................................................CGTTGTCGACGAAACCTGCAA......................................................2115.00550000000000000000
.........................................................................................CGGGTTTCGTTAGCAGCGGG...........................................................................................................2015.00520000300000000000
............................................................................................................................................TCGTTGTCGACGAAACCTGCAC......................................................2214.00440000000000000000
..............................................................................................................................................GTTGTCGACGAAACCTGCAA......................................................2014.00430100000000000000
........................................................................................TCGGGTTTCGTTAGCAGC..............................................................................................................1813.00310000200000000000
.........................................................................................CGGGTTTCGTTAGCAGCGGGAC.........................................................................................................2213.00330000000000000000
........................................................................................TCGGGTTTCGTTAGCAGCG.............................................................................................................1913.00300000300000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTA.........................................................2013.00330000000000000000
.........................................................................................CGGGTTTCGTTAGCAGCGGGG..........................................................................................................2113.00330000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAAAA....................................................2512.00220000000000000000
..........................................................................................GGGTTTCGTTAGCAGCGGGCT.........................................................................................................2112.00200200000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCACA.....................................................2412.00220000000000000000
........................................................................................TCGGGTTTCGTTAGCAGCGGGCC.........................................................................................................2312.00220000000000000000
........................................................................................TCGGGTTTCGTTAGCAGCGGGCT.........................................................................................................2312.00220000000000000000
.........................................................................................CGGGTTTCGTTAGCAGCGGGGG.........................................................................................................2212.00210100000000000000
............................................................................................................................................TCGTTGTCGACGAAACCTGCT.......................................................2112.00220000000000000000
............................................................................................................................................TCGTTGTCGACGAAACCTGCC.......................................................2112.00220000000000000000
.........................................................................................CGGGTTTCGTTAGCAGCGGGGC.........................................................................................................2212.00220000000000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCATC.....................................................2411.00110000000000000000
droSec2
AGG-------------------------------------------------------A---------TA--AACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAAC-----------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...........................................................................................................................................TTCGTTGTCGACGAAACCTGC........................................................21113672.00136722452218713218
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................2212713.00271340392762025
.........................................................................................CGGGTTTCGTTAGCAGCGGGCT.........................................................................................................2211028.001028312501512
...........................................................................................................................................TTCGTTGTCGACGAAACCTG.........................................................201551.0055115014396
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................231372.003721364349
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................231201.0020115310173
...........................................................................................................................................TTCGTTGTCGACGAAACCTGT........................................................211162.00162610155
...........................................................................................................................................TTCGTTGTCGACGAAACCT..........................................................19194.0094120082
...........................................................................................................................................TTCGTTGTCGACGAAACCTGA........................................................21180.008010079
.........................................................................................CGGGTTTCGTTAGCAGCGGGC..........................................................................................................21171.0071031751
............................................................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................21154.0054410112
............................................................................................................................................TCGTTGTCGACGAAACCTGC........................................................20150.0050240125
..............................................................................................................................................GTTGTCGACGAAACCTGC........................................................18126.002600224
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................22121.002110218
............................................................................................................................................TCGTTGTCGACGAAACCTG.........................................................19118.001816002
........................................................................................TCGGGTTTCGTTAGCAGCGGGC..........................................................................................................22116.001601015
..........................................................................................GGGTTTCGTTAGCAGCGGGCT.........................................................................................................21115.001500510
.........................................................................................CGGGTTTCGTTAGCAGCGGG...........................................................................................................20111.00110047
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA.....................................................2419.0090018
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAG......................................................2319.0090018
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................2319.0090009
...........................................................................................................................................TTCGTTGTCGACGAAACCTGG........................................................2118.0084004
...........................................................................................................................................TTCGTTGTCGACGAAACCTC.........................................................2018.0080026
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................2218.0081016
.............................................................................................................................................CGTTGTCGACGAAACCTGCA.......................................................2017.0076001
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................2216.0060006
............................................................................................................................................TCGTTGTCGACGAAACCTGCAT......................................................2215.0051004
............................................................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................2215.0052003
...........................................................................................................................................TTCGTTGTCGACGAAACCTGTT.......................................................2214.0040004
.........................................................................................CGGGTTTCGTTAGCAGCGGGCC.........................................................................................................2213.0030012
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCATT.....................................................2413.0031002
...........................................................................................................................................TTCGTTGTCGACGAAACCTT.........................................................2013.0031002
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCTA......................................................2312.0020002
.............................................................................................................................................CGTTGTCGACGAAACCTGC........................................................1912.0021001
.............................................................................................................................................CGTTGTCGACGAAACCTG.........................................................1812.0022000
........................................................................................TCGGGTTTCGTTAGCAGCGGGCT.........................................................................................................2312.0020002
........................................................................................TCGGGTTTCGTTAGCAGCGGG...........................................................................................................2112.0020002
...........................................................................................................................................TTCGTTGTCGACGAAACCTGACC......................................................2321.5030003
...........................................................................................................................................TTCGTTGTCGACGAAACCTGTC.......................................................2211.0010001
...............................................................................................................................................TTGTCGACGAAACCTGCA.......................................................1811.0010001
.........................................................................................CGGGTTTCGTTAGCAGCGG............................................................................................................1911.0010001
...........................................................................................................................................TTCGTTGTCGACGAAACCTGAC.......................................................2211.0010001
.........................................................................................CGGGTTTCGTTAGCAGCGGGCTT........................................................................................................2311.0011000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCATA.....................................................2411.0010001
..............................................................................................................................................GTTGTCGACGAAACCTGCAA......................................................2011.0010001
............................................................................................................................................TCGTTGTCGACGAAACCT..........................................................1811.0010001
.........................................................................................CGGGTTTCGTTAGCAGCG.............................................................................................................1811.0010001
.........................................................................................CGGGTTTCGTTAGCAGCGGT...........................................................................................................2011.0010001
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCATTT....................................................2511.0010001
..............................................................................................................................................GTTGTCGACGAAACCTGCA.......................................................1911.0010001
...........................................................................................................................................TTCGTTGTCGACGAAACCGC.........................................................2011.0010001
...........................................................................................................................................TTCGTTGTCGACGAAACCTCA........................................................2111.0010001
.........................................................................................CGGGTTTCGTTAGCAGCGGGCTC........................................................................................................2311.0010001
droYak3
---------------------------------------------------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAAAAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAAC-----------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................2215137.005137167248218996436964640010
...........................................................................................................................................TTCGTTGTCGACGAAACCTGC........................................................2114500.0045001798316543696691093120000
...........................................................................................................................................TTCGTTGTCGACGAAACCTG.........................................................2012374.00237420141191618913500000
.........................................................................................CGGGTTTCGTTAGCAGCGGGCT.........................................................................................................221823.008234961167117132630000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................231451.00451243161084285200000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................221225.00225189713051100000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................231176.0017614922102200000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................231153.00153436133315700000
...........................................................................................................................................TTCGTTGTCGACGAAACCT..........................................................191149.001491041410141600000
.........................................................................................CGGGTTTCGTTAGCAGCGGGCC.........................................................................................................221146.001469205400000000
...........................................................................................................................................TTCGTTGTCGACGAAACC...........................................................181121.001218803300000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................221108.0010855016082900000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGT........................................................21194.00945100276100000
.........................................................................................CGGGTTTCGTTAGCAGCGGGC..........................................................................................................21191.00915401892520010
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................22171.0071621102500000
............................................................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................21158.0058446110600000
............................................................................................................................................TCGTTGTCGACGAAACCTGC........................................................20144.0044140000300000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGG........................................................21131.0031290100100000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAG......................................................23121.0021112103400000
.........................................................................................CGGGTTTCGTTAGCAGCGGGCG.........................................................................................................22117.0017170000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGA........................................................21114.001480112200000
.........................................................................................CGGGTTTCGTTAGCAGCGGGCTT........................................................................................................2319.00980100000000
...........................................................................................................................................TTCGTTGTCGACGAAACCC..........................................................1918.00880000000000
............................................................................................................................................TCGTTGTCGACGAAACCTG.........................................................1918.00825001000000
............................................................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................2218.00880000000000
.............................................................................................................................................CGTTGTCGACGAAACCTGC........................................................1917.00734000000000
........................................................................................TCGGGTTTCGTTAGCAGCGGGC..........................................................................................................2217.00740002100000
...........................................................................................................................................TTCGTTGTCGACGAAACCTT.........................................................2016.00601101300000
...........................................................................................................................................TTCGTTGTCGACGAAAC............................................................1716.00600000600000
..............................................................................................................................................GTTGTCGACGAAACCTGC........................................................1816.00620000400000
.............................................................................................................................................CGTTGTCGACGAAACCTGCA.......................................................2015.00503100100000
............................................................................................................................................TCGTTGTCGACGAAACCT..........................................................1815.00505000000000
...............................................................................................................................................TTGTCGACGAAACCTGCA.......................................................1815.00541000000000
.........................................................................................CGGGTTTCGTTAGCAGCGGG...........................................................................................................2014.00400010200010
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCACA.....................................................2414.00440000000000
............................................................................................................................................TCGTTGTCGACGAAACCTGCAT......................................................2214.00402000200000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAAC.....................................................2414.00410100200000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCCA......................................................2314.00410101100000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA.....................................................2413.00310100100000
...........................................................................................................................................TTCGTTGTCGACGAAACCG..........................................................1913.00330000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAAT.....................................................2413.00300200100000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGAC.......................................................2212.00220000000000
.........................................................................................CGGGTTTCGTTAGCAGCGGGT..........................................................................................................2112.00210010000000
..............................................................................................................................................GTTGTCGACGAAACCTGCAA......................................................2012.00210001000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGTT.......................................................2212.00220000000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCATA.....................................................2412.00220000000000
..........................................................................................GGGTTTCGTTAGCAGCGGGCT.........................................................................................................2112.00210010000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTA.........................................................2012.00210001000000
.........................................................................................CGGGTTTCGTTAGCAGCGGGAC.........................................................................................................2212.00210100000000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCATT.....................................................2412.00210000100000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCTC......................................................2311.00110000000000
droEre2
---------------------------------------------------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAAC-----------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...........................................................................................................................................TTCGTTGTCGACGAAACCTGC........................................................21121489.00214894587911479954196520
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................2214377.004377978278584633124430
.........................................................................................CGGGTTTCGTTAGCAGCGGGCT.........................................................................................................2211148.00114821745621310090
...........................................................................................................................................TTCGTTGTCGACGAAACCTG.........................................................201730.00730235075024180
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................231337.00337361051202380
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................231235.0023522335011740
............................................................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................211113.00113102030080
...........................................................................................................................................TTCGTTGTCGACGAAACCTGT........................................................211106.00106301901830
...........................................................................................................................................TTCGTTGTCGACGAAACCTGA........................................................21196.009610600890
............................................................................................................................................TCGTTGTCGACGAAACCTGC........................................................20195.0095460300460
.........................................................................................CGGGTTTCGTTAGCAGCGGGC..........................................................................................................21184.008413620720
...........................................................................................................................................TTCGTTGTCGACGAAACCT..........................................................19164.0064160300450
..............................................................................................................................................GTTGTCGACGAAACCTGC........................................................18140.004010000390
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................22133.0033021800130
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................22128.002853320150
............................................................................................................................................TCGTTGTCGACGAAACCTG.........................................................19126.002624000020
.............................................................................................................................................CGTTGTCGACGAAACCTGC........................................................19119.001930100150
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................23118.00182540070
........................................................................................TCGGGTTTCGTTAGCAGCGGGC..........................................................................................................22117.001700100160
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAG......................................................23116.001630300100
..........................................................................................GGGTTTCGTTAGCAGCGGGCT.........................................................................................................21114.001400101120
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................22112.001200100110
..............................................................................................................................................GTTGTCGACGAAACCTGCA.......................................................19112.00121020090
.............................................................................................................................................CGTTGTCGACGAAACCTGCA.......................................................20110.00104010050
...........................................................................................................................................TTCGTTGTCGACGAAACCTT.........................................................2019.0090010080
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA.....................................................2418.0080010070
............................................................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................2218.0081110050
...........................................................................................................................................TTCGTTGTCGACGAAACC...........................................................1818.0081500020
.........................................................................................CGGGTTTCGTTAGCAGCGGGCC.........................................................................................................2218.0080800000
...........................................................................................................................................TTCGTTGTCGACGAAACCTC.........................................................2016.0061000050
.........................................................................................CGGGTTTCGTTAGCAGCGGG...........................................................................................................2015.0050010040
...............................................................................................................................................TTGTCGACGAAACCTGCA.......................................................1815.0050000050
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCATT.....................................................2414.0041010020
.........................................................................................CGGGTTTCGTTAGCAGCGGGT..........................................................................................................2113.0030010020
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCCA......................................................2313.0030030000
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAAT.....................................................2413.0030000030
............................................................................................................................................TCGTTGTCGACGAAACCTGCT.......................................................2113.0031000020
...........................................................................................................................................TTCGTTGTCGACGAAACCTCA........................................................2112.0020000020
............................................................................................................................................TCGTTGTCGACGAAACCT..........................................................1812.0022000000
.............................................................................................................................................CGTTGTCGACGAAACCTG.........................................................1812.0021000010
.........................................................................................CGGGTTTCGTTAGCAGCGGGA..........................................................................................................2112.0020000020
............................................................................................................................................TCGTTGTCGACGAAACCTGA........................................................2012.0021000010
............................................................................................................................................TCGTTGTCGACGAAACCTGCAG......................................................2212.0021000010
...........................................................................................................................................TTCGTTGTCGACGAAACCTGCAGT.....................................................2412.0020010010
..............................................................................................................................................GTTGTCGACGAAACCTGCAA......................................................2012.0020010010
.............................................................................................................................................CGTTGTCGACGAAACCTGCAA......................................................2112.0021000010
........................................................................................TCGGGTTTCGTTAGCAGC..............................................................................................................1812.0020000020
...........................................................................................................................................TTCGTTGTCGACGAAACTGC.........................................................2061.3380000080
.............................................................................................................................................CGTTGTCGACGAAACCTGCC.......................................................2011.0010000010
............................................................................................................................................TCGTTGTCGACGAAACCTGCATT.....................................................2311.0011000000

Generated: 10/20/2015 at 07:30 PM