ID:

dmo_2567

 Coordinate:

scaffold_6680:23051526-23051676 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.0 -20.9 -20.9

Flybase annnotation

exon [dmoj_GLEANR_13835:1]; CDS [Dmoj\GI13945-cds]; intron [Dmoj\GI13945-in]

Repeatable elements

NameClassFamilyStrand
Gypsy-5_DGri-I-intLTRGypsy+
mature
  1. scaffold_59:1686-1709 +
  2. scaffold_172:18-41 +
  3. scaffold_659:497-520 +
  4. scaffold_1651:1374-1397 +
  5. scaffold_1780:3953-3976 +
  6. scaffold_2582:2645-2668 +
  7. scaffold_2803:4958-4981 +
  8. scaffold_3798:2473-2496 +
  9. scaffold_4590:11652-11675 +
  10. scaffold_4667:331-354 +
  11. scaffold_5671:911-934 +
  12. dmo_595  scaffold_6370:1978-2001 +
  13. scaffold_6451:17650-17673 +
  14. scaffold_6498:3102778-3102801 +
  15. scaffold_6500:31567614-31567637 +
  16. scaffold_6680:7992942-7992965 +
  17. scaffold_6680:8000394-8000417 +
  18. dmo_2567  scaffold_6680:23051547-23051570 +
  19. scaffold_6680:23062193-23062216 +
  20. scaffold_6680:23077859-23077882 +
  21. scaffold_6483:71584-71607 +
  22. scaffold_1777:3478-3501 +
  23. scaffold_3464:48-71 +
  24. scaffold_4066:964-987 +
  25. scaffold_4262:4129-4152 +
  26. scaffold_4741:3749-3772 +
  27. scaffold_6405:72851-72874 +
  28. scaffold_6413:42787-42810 +
  29. scaffold_6482:2720993-2721016 +
  30. scaffold_6680:23084363-23084386 +
star
  1. scaffold_1651:1466-1484 +
  2. scaffold_3240:191-209 -
  3. scaffold_3464:140-158 +
  4. scaffold_3798:2565-2583 +
  5. scaffold_4569:5997-6015 -
  6. scaffold_4574:3236-3254 +
  7. scaffold_4590:11745-11763 +
  8. scaffold_5280:296-314 -
  9. scaffold_6442:66109-66127 -
  10. scaffold_6451:17743-17761 +
  11. scaffold_6482:2721086-2721104 +
  12. scaffold_6498:2268363-2268381 -
  13. scaffold_6498:2466996-2467014 +
  14. scaffold_6498:3102870-3102888 +
  15. scaffold_6500:31566650-31566668 -
  16. scaffold_6541:949813-949831 -
  17. scaffold_6541:959871-959889 -
  18. dmo_2567  scaffold_6680:23051640-23051658 +
  19. scaffold_6680:23077951-23077969 +
  20. scaffold_6838:99972-99990 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAACGCCAACGTCGTCGACTGAACCACAGCTCAACTAGGGATAGAATTAAGTAATTTAGTTGCAAATTTGTTCTTGAATAAAACGGACTGCATTTAAGCAGTAAAATATCAAAACATCTTTTTTTACCGTTTAAATAAAGAAAGAACTTAACTGGCACCCGAGCAGGGACCGGCTTCGCGCGCAATACAGCAAAACGTTTAGTACGTGCGTGATACTGCAAGTTAAAAGCAGAGTCGGTTTAAATAAAACG
***********************************************************************((((.....(((((((((((......)))))........................)))))).....))))..........((((..(((.....))).))))..........******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
.AACGCCAACGTCGTCGACTGA..................................................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0
.......................................................................TCTTGAATAAAACGGACTGCATTT............................................................................................................................................................ 24 0 20 0.40 8 6 1 0 1
.......................................................................TCTTGAATAAAACGGACTGCATTTAAGC........................................................................................................................................................ 28 0 20 0.25 5 5 0 0 0
................................................................................................AGCAGTAAAATATCAAAACATCTTT.................................................................................................................................. 25 0 6 0.17 1 1 0 0 0
........................................................................CTTGAATAAAACGGACTGCATTTAAGC........................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0
....................................................................................................................................................................AGGGACCGGCTTCGCGCGC.................................................................... 19 0 20 0.05 1 1 0 0 0
.......................................................................TCTTGAATAAAACGGACTGCATTTC........................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0
.......................................................................TCTTGAATAACACGGACTGCATT............................................................................................................................................................. 23 1 20 0.05 1 0 1 0 0
...............................................................................................................................................................................................AAAACGTTTAGTACGTGCGTGATACTGC................................ 28 0 20 0.05 1 1 0 0 0
...............................................................................................................................................................................................AAAACGTTTAGTACGTGCGTGATAC................................... 25 0 20 0.05 1 1 0 0 0
...............................................................................................................................................................................................AAAACGTTTAGTACGTGCGTG....................................... 21 0 20 0.05 1 1 0 0 0
......................................................................TTCTTGAATAAAACGGACTGCATT............................................................................................................................................................. 24 0 20 0.05 1 0 1 0 0
......................................................................TTCTTGAATAAAACGGACTGCATTTA........................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0
......................................................TTTAGTTGCAAATTTGTTCTTG............................................................................................................................................................................... 22 0 20 0.05 1 0 0 1 0
.......................................................................TCTTGAATAAAACGGACTGC................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0
.......................................................................................................................................................................................AATACAGCAAAACGTTTAGTACGT............................................ 24 0 20 0.05 1 1 0 0 0
...............................................................................................................AAACATCTTTTTTTACCGTT........................................................................................................................ 20 0 20 0.05 1 1 0 0 0
...............................................................................................................................CGTTTAAATAAAGAAAGAACTTAACC.................................................................................................. 26 1 20 0.05 1 1 0 0 0
.......................................................................TCTTGAATAAAACGGACTGCATT............................................................................................................................................................. 23 0 20 0.05 1 0 1 0 0
........................................................................CTTGAATAAAACGGACTGC................................................................................................................................................................ 19 0 20 0.05 1 1 0 0 0
....................................................................................................................................................................................................GTTTAGTACGTGCGTGATACT.................................. 21 0 20 0.05 1 0 0 1 0
..........................................................................................................................................................................CGGCTTCGCGCGCAATACAGCA........................................................... 22 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

GTTGCGGTTGCAGCAGCTGACTTGGTGTCGAGTTGATCCCTATCTTAATTCATTAAATCAACGTTTAAACAAGAACTTATTTTGCCTGACGTAAATTCGTCATTTTATAGTTTTGTAGAAAAAAATGGCAAATTTATTTCTTTCTTGAATTGACCGTGGGCTCGTCCCTGGCCGAAGCGCGCGTTATGTCGTTTTGCAAATCATGCACGCACTATGACGTTCAATTTTCGTCTCAGCCAAATTTATTTTGC
********************************************************************((((.....(((((((((((......)))))........................)))))).....))))..........((((..(((.....))).))))..........*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V049
head
 V041
embryo
 V056
head
.......................GGTGTCGAGTTGATCCCTATCTTAATT......................................................................................................................................................................................................... 27 0 2 5.00 10 9 1 0 0 0 0
GTTGCGGTTGCAGCAGCTGACTTGGT................................................................................................................................................................................................................................. 26 0 2 5.00 10 9 1 0 0 0 0
..........................GTCGAGTTGATCCCTATCTTAATTCATT..................................................................................................................................................................................................... 28 0 2 4.50 9 9 0 0 0 0 0
.....................................CCCTATCTTAATTCATTAAATCAACGT........................................................................................................................................................................................... 27 0 2 4.50 9 9 0 0 0 0 0
..........................GTCGAGTTGATCCCTATCTTAATTCAT...................................................................................................................................................................................................... 27 0 2 2.00 4 3 1 0 0 0 0
...GCGGTTGCAGCAGCTGACTTGGTGT............................................................................................................................................................................................................................... 25 0 2 1.50 3 3 0 0 0 0 0
..........................GTCGAGTTGATCCCTATCTTAATT......................................................................................................................................................................................................... 24 0 2 1.50 3 3 0 0 0 0 0
.....................................CCCTATCTTAATTCATTAAATCAACGTT.......................................................................................................................................................................................... 28 0 2 1.50 3 3 0 0 0 0 0
...............................GTTGATCCCTATCTTAATTCATT..................................................................................................................................................................................................... 23 0 2 1.50 3 3 0 0 0 0 0
.......TTGCAGCAGCTGACTTGGTGTCGAGTT......................................................................................................................................................................................................................... 27 0 3 1.33 4 4 0 0 0 0 0
.....................................................................................................................................................................................................................ATGACGTTCAATTTTCGTCTCAGCCAAA.......... 28 0 15 1.20 18 12 0 6 0 0 0
.....................................CCCTATCTTAATTCATTAAATCAACGTTT......................................................................................................................................................................................... 29 0 2 1.00 2 2 0 0 0 0 0
................................................................................................................................................TTGAATTGACCGTGGGCTCGTCCCT.................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................ATTTCTTTCTTGAATTGACCGTGGGCT......................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................AATTTATTTCTTTCTTGAATTGACCGT.............................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................TCTTTCTTGAATTGACCGTGGGC.......................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
..TGCGGTTGCAGCAGCTGACTTGGT................................................................................................................................................................................................................................. 24 0 2 1.00 2 2 0 0 0 0 0
.....................................................................................................................................................ATGACCGTGGGCTCGTCCCTGGCCGA............................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................TTCTTGAATTGACCGTGGGCTCGTCCCT.................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
........TGCAGCAGCTGACTTGGTGTCGAGTT......................................................................................................................................................................................................................... 26 0 3 1.00 3 3 0 0 0 0 0
..........................................................................................................................................................CGTGGGCTCGTCCCTGGCCGAAGCG........................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
......................................................AAATCAACGTTTAAACAAGAACTTATT.......................................................................................................................................................................... 27 0 20 0.90 18 17 1 0 0 0 0
......................................................................................................................................................................................................................TGACGTTCAATTTTCGTCTCAGCCAAA.......... 27 0 15 0.87 13 7 0 6 0 0 0
.........................................................................................................................................................................................................................CGTTCAATTTTCGTCTCAGCCAAA.......... 24 0 15 0.73 11 10 0 1 0 0 0
.......................................................................................................................................................................................................................GACGTTCAATTTTCGTCTCAGCCAAA.......... 26 0 15 0.73 11 11 0 0 0 0 0
................................................................................................................TTGTAGAAAAAAATGGCAAATTTAT.................................................................................................................. 25 0 20 0.70 14 13 1 0 0 0 0
.........GCAGCAGCTGACTTGGTGTCGAGTTGAT...................................................................................................................................................................................................................... 28 0 3 0.67 2 2 0 0 0 0 0
......................TGGTGTCGAGTTGATCCCTATCTT............................................................................................................................................................................................................. 24 0 3 0.67 2 2 0 0 0 0 0
.........GCAGCAGCTGACTTGGTGTCGAGTT......................................................................................................................................................................................................................... 25 0 3 0.67 2 2 0 0 0 0 0
..................GACTTGGTGTCGAGTTGATCCCTATCTT............................................................................................................................................................................................................. 28 0 3 0.67 2 2 0 0 0 0 0
.....................................................TAAATCAACGTTTAAACAAGAACTTATT.......................................................................................................................................................................... 28 0 20 0.65 13 13 0 0 0 0 0
........................................................................................................................................................................................................................ACGTTCAATTTTCGTCTCAGCCAAA.......... 25 0 15 0.60 9 8 0 1 0 0 0
.....................................CCCTATCTTAATTCATTAAATCAACGTTA......................................................................................................................................................................................... 29 1 2 0.50 1 1 0 0 0 0 0
............................CGAGTTGATCCCTATCTTAATTCATT..................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0
......................TGGTGTCGAGTTGATCCCTATCTTAAT.......................................................................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0
..TGCGGTTGCAGCAGCTGACTTGGTGT............................................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0
............................CGAGTTGATCCCTATCTTAATTCAT...................................................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0
.............................GAGTTGATCCCTATCTTAATTCATTA.................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0
.....................................CCCTATCTTAATTCATTAAATC................................................................................................................................................................................................ 22 0 2 0.50 1 1 0 0 0 0 0
.....................................CCCTATCTTAATTCATTA.................................................................................................................................................................................................... 18 0 2 0.50 1 1 0 0 0 0 0
.CTGCGGTTGCAGCAGCTGACTTGGT................................................................................................................................................................................................................................. 25 1 2 0.50 1 1 0 0 0 0 0
GTTGCGGTTGCAGCAGCTGACTTGG.................................................................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0
......................TGGTGTCGAGTTGATCCCTATCTTAATT......................................................................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0
...............................GTTGATCCCTATCTTAATTCATTAAAT................................................................................................................................................................................................. 27 0 2 0.50 1 1 0 0 0 0 0
TTTGCGTTTGCAGCAGCTGACTTGGT................................................................................................................................................................................................................................. 26 2 2 0.50 1 0 0 0 1 0 0
..............................AGTTGATCCCTAGCTTAATTCATT..................................................................................................................................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0
........................................................................................ACGTAAATTCGTCATTTTATAGTTTT......................................................................................................................................... 26 0 7 0.43 3 3 0 0 0 0 0
............................................................................................................................................................................................................................TCAATTTTCGTCTCAGCCAAATTTAT..... 26 0 15 0.40 6 6 0 0 0 0 0
.............................................................................................................................................................................GAAGCGCGCGTTATGTCGTTTTGCAAAT.................................................. 28 0 20 0.40 8 7 1 0 0 0 0
............................................................................................................................................................................................................GCACGCACTATGACGTTCAATTTTCGTCT.................. 29 0 20 0.35 7 7 0 0 0 0 0
..................GACTTGGTGTCGAGTTGATCCCTAT................................................................................................................................................................................................................ 25 0 3 0.33 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GTTCAATTTTCGTCTCAGCCAAA.......... 23 0 15 0.33 5 5 0 0 0 0 0
........AGCAGCAGCTGACTTGGTGTCGAGTT......................................................................................................................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0 0
...............GCTGACTTGGTGTCGAGTTGATCCC................................................................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0 0
......GTTGCAGCAGCTGACTTGGTGTCGAGTT......................................................................................................................................................................................................................... 28 0 3 0.33 1 1 0 0 0 0 0
..................GACTTGGTGTCGAGTTGATCCCTATCT.............................................................................................................................................................................................................. 27 0 3 0.33 1 1 0 0 0 0 0
.......................GGTGTCGAGTTGATCCCTATCTT............................................................................................................................................................................................................. 23 0 3 0.33 1 1 0 0 0 0 0
.....................TTGGTGTCGAGTTGATCCCTATCTT............................................................................................................................................................................................................. 25 0 3 0.33 1 1 0 0 0 0 0
......................................................................................................................................................................CCTGGCCGAAGCGCGCGTTATGTCGTT.......................................................... 27 0 20 0.30 6 5 0 1 0 0 0
.........................................................................................................................................................................GGCCGAAGCGCGCGTTATGTCGTT.......................................................... 24 0 20 0.25 5 5 0 0 0 0 0
.....................................................................................................................................................................CCCTGGCCGAAGCGCGCGTTATGTCGTT.......................................................... 28 0 20 0.25 5 4 0 1 0 0 0
........................................................................................ACGTAAATTCGTCATTTTATAGTT........................................................................................................................................... 24 0 8 0.25 2 2 0 0 0 0 0
......................................................................................................................................................................................................................TGACGTTCAATTTTCGTCTCAGCCAA........... 26 0 20 0.25 5 5 0 0 0 0 0
.....................................................................................................................................................................CCCTGGCCGAAGCGCGCGTTATGTCGT........................................................... 27 0 20 0.20 4 4 0 0 0 0 0
.........................................................................................................................................................................................................................CGTTCAATTTTCGTCTCAGCCAAATTT....... 27 0 15 0.20 3 3 0 0 0 0 0
.............................................................................................................................................................................................CGTTTTGCAAATCATGCACGCACTAT.................................... 26 0 20 0.20 4 4 0 0 0 0 0
....CGGTTGCAGCAGCTGACTTGGTGT............................................................................................................................................................................................................................... 24 0 20 0.20 4 0 0 4 0 0 0
........................................................................................................................................................................TGGCCGAAGCGCGCGTTATGTCGTT.......................................................... 25 0 20 0.20 4 4 0 0 0 0 0
............................................................................................................................................................................................................................TCAATTTTCGTCTCAGCCAAATTTATT.... 27 0 15 0.20 3 3 0 0 0 0 0
............................................................................................AAATTCGTCATTTTATAGTTTTGTAGAAA.................................................................................................................................. 29 0 6 0.17 1 1 0 0 0 0 0
............................................................................................................................................................................................................GCACGCACTATGACGTTCAATTTTCGT.................... 27 0 20 0.15 3 3 0 0 0 0 0
....................................................CTAAATCAACGTTTAAACAAGAACTTATT.......................................................................................................................................................................... 29 1 20 0.15 3 3 0 0 0 0 0
.................................................................................................................................................................................CGCGCGTTATGTCGTTTTGCAAAT.................................................. 24 0 20 0.15 3 3 0 0 0 0 0
.........................................................................................................................................................................GGCCGAAGCGCGCGTTATGTCGTTTT........................................................ 26 0 20 0.15 3 3 0 0 0 0 0
.........................................................................................CGTAAATTCGTCATTTTATAGTTTTGT....................................................................................................................................... 27 0 7 0.14 1 1 0 0 0 0 0
.........................................................................................CGTAAATTCGTCATTTTATAGTTT.......................................................................................................................................... 24 0 7 0.14 1 1 0 0 0 0 0
........................................................................................ACGTAAATTCGTCATTTTATAGTTT.......................................................................................................................................... 25 0 7 0.14 1 1 0 0 0 0 0
.........................................................................................CGTAAATTCGTCATTTTATAGTTTTA........................................................................................................................................ 26 1 7 0.14 1 1 0 0 0 0 0
......................................................................................CCACGTAAATTCGTCATTTTATAGTTT.......................................................................................................................................... 27 2 7 0.14 1 1 0 0 0 0 0
.........................................................................................CGTAAATTCGTCATTTTATAGTTTT......................................................................................................................................... 25 0 7 0.14 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GTTCAATTTTCGTCTCAGCCAAATTT....... 26 0 15 0.13 2 2 0 0 0 0 0
......................................................................................................................................................................................................................TGACGTTCAATTTTCGTCTCAGCCAGA.......... 27 1 15 0.13 2 0 0 2 0 0 0
.............................................................................................................................................................................................................................CAATTTTCGTCTCAGCCAAATTTATT.... 26 0 15 0.13 2 2 0 0 0 0 0
.........................................................................................................................................................................................................................CGTTCAATTTTCGTCTCAGCCAAATT........ 26 0 15 0.13 2 1 0 1 0 0 0
.......................................................................................................................................................................................................................GACGTTCAATTTTCGTCTCAGCCAAAT......... 27 0 15 0.13 2 2 0 0 0 0 0
............................................................................................................................................................................................................................TCAATTTTCGTCTCAGCCAAATTTATTT... 28 0 15 0.13 2 2 0 0 0 0 0
......................................................................................................................................................................................................................TGACGTTCAATTTTCGTCTCAGCCAAAT......... 28 0 15 0.13 2 1 0 1 0 0 0
...................................................................................AAATGACGTAAATTCGTCATTTTATAGT............................................................................................................................................ 28 3 8 0.13 1 1 0 0 0 0 0
.........................................................................................CGTAAATTCGTCATTTTATAGTT........................................................................................................................................... 23 0 8 0.13 1 1 0 0 0 0 0
......................................................................................TGACGTAAATTCGTCATTTTATAGT............................................................................................................................................ 25 0 8 0.13 1 1 0 0 0 0 0
..........................................................................................................ATAGTTTTGTAGAAAAAAATGGCAAA....................................................................................................................... 26 0 8 0.13 1 1 0 0 0 0 0
..........................................................................................................ATAGTTTTGTAGAAAAAAATGGCAAATT..................................................................................................................... 28 0 8 0.13 1 1 0 0 0 0 0
.................................................................................................CGTCATTTTATAGTTTTG........................................................................................................................................ 18 0 8 0.13 1 1 0 0 0 0 0
..............................................................................................................................................................GGCTCGTCCCTGGCCGAAGCGCGCGTT.................................................................. 27 0 20 0.10 2 2 0 0 0 0 0
.......................................................................................................................................................................CTGGCCGAAGCGCGCGTTATGTCGT........................................................... 25 0 20 0.10 2 2 0 0 0 0 0
.........................................................................................................................................................................GGCCGAAGCGCGCGTTATGTCGTTT......................................................... 25 0 20 0.10 2 2 0 0 0 0 0
.................................................................TAAACAAGAACTTATTTTGCCTGACGT............................................................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0 0
........TGCAGCAGCTGACTTGGTGTCGAGT.......................................................................................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0 0
.....................................................TAAATCAACGTTTAAACAAGAACTTATTT......................................................................................................................................................................... 29 0 20 0.10 2 2 0 0 0 0 0
...............................................................................................................................................................................AGCGCGCGTTATGTCGTTTTGCAAAT.................................................. 26 0 20 0.10 2 2 0 0 0 0 0
......................................................AAATCAACGTTTAAACAAGAACTT............................................................................................................................................................................. 24 0 20 0.10 2 2 0 0 0 0 0
......................................................AAATCAACGTTTAAACAAGAACTTATTT......................................................................................................................................................................... 28 0 20 0.10 2 2 0 0 0 0 0
....CGGTTGCAGTGGCTGACTTGGTGTC.............................................................................................................................................................................................................................. 25 2 20 0.10 2 0 2 0 0 0 0
..............................................................................................................CTTTGTAGAAAAAAATGGCAAATTTAT.................................................................................................................. 27 1 20 0.10 2 0 2 0 0 0 0
.........................................................................................................................................................................................................................CGTTCAATTTTCGTCTCAGCCAA........... 23 0 20 0.10 2 2 0 0 0 0 0
......................................................................................................................................................................................................................TGACGTTCAATTTTCGTCTCAGCCA............ 25 0 20 0.10 2 1 0 1 0 0 0
.................................................................................................................TGTAGAAAAAAATGGCAAATTTAT.................................................................................................................. 24 0 20 0.10 2 2 0 0 0 0 0
................................................................................................................................................................................GCGCGCGTTATGTCGTTTTGCAAAT.................................................. 25 0 20 0.10 2 1 1 0 0 0 0
.............................................................................................................GTTTTGTAGAAAAAAATGGCAAATTT.................................................................................................................... 26 0 13 0.08 1 0 1 0 0 0 0
............................................................................................................................................................................................................................TCAATTTTCGTCTCAGCCAAATTTA...... 25 0 15 0.07 1 1 0 0 0 0 0
......................................................................................................................................................................................................................TGACGTTCAATTTTCGTCTCAGCTAAA.......... 27 1 15 0.07 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................AAAACGTTCAATTTTCGTCTCAGCCAAA.......... 28 2 15 0.07 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................CTGACGTTCAATTTTCGTCTCAGCCAAA.......... 28 1 15 0.07 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................CGTTCAATTTTCGTCTCAGCCAGA.......... 24 1 15 0.07 1 0 0 1 0 0 0
.............................................................................................................................................................................................................................CAATTTTCGTCTCAGCCAAATTTATTTT.. 28 0 15 0.07 1 1 0 0 0 0 0
........................................................................................................................................................................................................................ACGTTCAATTTTCGTCTCAGCCAAATT........ 27 0 15 0.07 1 1 0 0 0 0 0
......................................................................................................................................................................................................................CGACGTTCAATTTTCGTCTCAGCCAAAT......... 28 1 15 0.07 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................ATGACGTCCAATTTTCGTCTCAGCCAAAT......... 29 1 15 0.07 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GTTCAATTTTCGTCTCAGCCAAATT........ 25 0 15 0.07 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................CAATTTTCGTCTCAGCCAAATTTAT..... 25 0 15 0.07 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................GACGTTCAATTTTCGTCTCAGCCAAATT........ 28 0 15 0.07 1 1 0 0 0 0 0
......................................................................................................................................................................................................................TGACGTTCAATTTTCGTCTAAGCCAAA.......... 27 1 15 0.07 1 0 0 1 0 0 0
......................................................................................................................................................TGACCGTGGGCTCGTCCCTGGT............................................................................... 22 1 17 0.06 1 1 0 0 0 0 0
...................................................................................................................................................................................CGCGTTATGTCGTTTTGCAAAT.................................................. 22 0 20 0.05 1 0 0 1 0 0 0
.............................................................................................................................................................................GAAGCGCGCGTTATGTCGTTTT........................................................ 22 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................TTTTTAGAAAAAAATGGCAAATTTAT.................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................CCGAAGCGCGCGTTATGTCGT........................................................... 21 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................................TGGCCGAAGCGCGCGTTATGTCGTTTT........................................................ 27 0 20 0.05 1 1 0 0 0 0 0
........................................................................CAACTTATTTTGCCTGACGTAAATTCGT....................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................CGCGTTATGTCGTTTTGCAAA................................................... 21 0 20 0.05 1 1 0 0 0 0 0
.....GGTTGCAGCAGCTGACTTGGTGT............................................................................................................................................................................................................................... 23 0 20 0.05 1 0 0 1 0 0 0
........................................................................................................................................................................CGGCCGAAGCGCGCGTTATGTCGTT.......................................................... 25 1 20 0.05 1 0 0 1 0 0 0
............................................................................................................................................................................................................GCACGCACTATGACGTTCAATTTTCGTT................... 28 1 20 0.05 1 1 0 0 0 0 0
......GTTGCAGCAGCTGACTTGGTGTCGA............................................................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................CTTGTAGAAAAAAATGGCAAATTTAT.................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0 0
....................................................................................................................................................................................................CAAATCATGCACGCACTATGACGTTCAAT.......................... 29 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................ACCGTGGGCTTGTCCCTGGA............................................................................... 20 2 20 0.05 1 0 0 1 0 0 0
.....................................................CAAATCAACGTTTAAACAAGAACTTATT.......................................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0
.........................................................................................................TAGAGGTTTGTAGAAAAA................................................................................................................................ 18 2 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................................................................................ATGACGTTCAATTTTCGTCTCAGCCA............ 26 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................................................CGTTATGTCGTTTTGCAAATCATGCACGC......................................... 29 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................ACCGTGGGCTCGTCCCTGAACGT............................................................................ 23 3 20 0.05 1 0 0 1 0 0 0
......GTTGCAGCAGCTGACTTGGTGTCG............................................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................GGCTCGTCCCTGGCCGAAGCGCGCGTTA................................................................. 28 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................................GTCGTTTTGCAAATCATGCACGCAC....................................... 25 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................................................................CGACGTTCAATTTTCGTCTCAGCCAA........... 26 1 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................................GCGCGTTATGTCGTTTTGCAAAT.................................................. 23 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................................ATGTCGTTTTGCAAATCATGCACGCACT...................................... 28 0 20 0.05 1 1 0 0 0 0 0
............................................................ACGTATATACCAGAACTTATT.......................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 1
.....................................................................................................................................................................................CGTTATGTCGTTTTGCAAATCATGCA............................................ 26 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................................................TTTGCAAATCATGGACGCACTATGA.................................. 25 1 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................................................CATGCACGCACTATGACGTTCAATT......................... 25 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................GGCCGAAGCGCGCGTTATGTCGTTTTC....................................................... 27 1 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................GTCCCTGGCCGAAGCGCGCGTT.................................................................. 22 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................................................CATGCACGCACTATGACGTTCAAT.......................... 24 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................GGCCGAAGCGCGCGTTATGTCGTTTTGC...................................................... 28 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GTTCAATTTTCGTCTCAGCCAA........... 22 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................TCGTCCCTGGCCGAAGCGCGCGTTATGT.............................................................. 28 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................CTGGCCGAAGCGCGCGTTATGTCGTT.......................................................... 26 0 20 0.05 1 0 0 1 0 0 0
........................................................................................................................................................................................................................ACGTTCAATTTTCGTCTCAGCCAA........... 24 0 20 0.05 1 1 0 0 0 0 0
....CGGTTTCAGCAGCTGACTTGGTG................................................................................................................................................................................................................................ 23 1 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................GGGCTCGTCCCTGGCCGAAGCGCGCGT................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................GTCGAAGCGCGCGTTATGTCGTT.......................................................... 23 1 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................................................GCACGCACTATGACGTTCAAT.......................... 21 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................................................ACGCACTATGACGTTCAGTTT........................ 21 1 20 0.05 1 0 0 0 0 1 0
.............................................................................................................................................................GGGCTCGTCCCTGGCCGAAGCGCGCGTT.................................................................. 28 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................GTAGAAAAAAATGGCAAATTTAT.................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6680:23051476-23051726 + dmo_2567 CAAC---------------GC---CAACGTCGT--C----GACTG-A-ACCACAGCT-------------------------CA-ACTAGGG-ATA----------------------GAATTAAGTA-ATTTAGTTGCAAATTTGTT--------------CTTGAATAAAACGG-ACTGCAT--------TTAAGCAG------TAAAATATCA--A--AACATCTTT-TTTTAC---CG--T-----------T--TAAA---TAAAGAAAGAACTTAACTGGCACCCGAGCAGGGACCGG-CT-TCGCGCGCAATACAGCAAAACG---TTTAGTAC--GTGCGTGAT-AC---T-------------------GCAAGTTAAAAGCAGA----------------------------------------GTCGGTTT--AAATAA-----AACG
droVir3 scaffold_4739:5394-5633 + CAACATCAGCAGCGACGCCGCTGCCAACGCCGC--T----GCCGCTAAGCCACAGTT---------------------------AACTAGGG-CT-------------CC----AATTGATTTAAGTTTATTCAGTTGCAAATTAACA---TAAAAAAAAAG----------TCTT-GC---TT--------TCA------------------TAA--A---AATCATAT-TTTTTTCATCG--TTT-----------A---A---TAAACTTTGGATTTAACTTGCGCCCGAGCAGGGACCGT-CT-CGTGTTACAACAAAATAAAACG---CTT-TTAC--GTACGCGTTA------------G----TCGGTTATA----------------------------------------------------------------------------CGCG
droGri2 scaffold_14624:1234518-1234745 - CAACT--------------GA---CACCGTCGG--C----GACAA-A-ACCGCAACGATCAGCAGAAGCAGCAGTCCGAGGTTAAGTTATGATAAGTTTCAGTT-T-------------------ATAAATTCAGTCTTA-------------------------------ATAAA-AC---AT--------TCAAAC-------------AGAA-----------CAAA-TT--G-----GT---TTT--TTTTATTAAAAACCTC-GAGGACTCGTTTAATTGGCGCCCGAGCAGGGACCGG-T--ACGGAAGTAAAAGT-TATAGTGC------------GTTAGTGAA-------AG----------TG-----------------------------------------------------------------TTTT--AACTAC-----TGCG
droWil2 scf2_1100000009705:1288-1436 - TTGT---------------AT---TG-------------------------------------------------------------------------------------------------------------------------------------------TAATAAAAGTG-AC---TT--------TATAA----------------ATAAAA---ATTCATTT-TTT-A---------------ACCCGT---GAG---TGAAGGAAGTGTTTAATTGGCGCCCGAGCAGGGACCCT-GC-T-AAATACAACGTGATC--G----------TGA--GTTAGTGAA-------A--------------------------------------------------------GA--------TACCAGTG----ATTC--GTGACCA-----AAA
dp5 Unknown_group_284:14696-14799 - AAAC---------------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTTAT-TT---T--------------GTCCTT--CCAA---T-AAGGATAAAATTAACTGGCGCCCGAGCAGGGACCTG-AC-TAGTGAACAACACAACAAAAAG---TTTA---CGTGAACGT-----------------------------------------------------------------------------------------------------------ACG
droPer2 scaffold_338:11751-11950 + TAGA---------------TT---T--------------------------------------------------------------------------------------------------------AAGCAGTCACATTCTGATA--------------TTCAATAAAAGCACTTC---GCTAAAGTGAACAGAA--TCA----------AAAAAA---ACTTTTAT-TT---T--------------GTCCGT--CGAA---T-AAGGATAAAATTTACTGGCGCCCGAGCAGGGACCTG-AC-TAGTGAACAACACAGCAAAAAG---TTTAGTAC--GTTCGCGAAAAC--------------------------------------------------------------TGCAAAAACTTGCAGCCGTCGGTCT-------CA-----ATA
droAna3 scaffold_7851:674-909 + GA-C---------------TC---TGGTGCCGCTCT----GCCGAAAAGCCTTAGT--------------------------TAGCTCAGGGT---------------AG----AATTGGTTTAAGTT-TTTCAGTTTCAAAATTACC--------------ATAAAAGAATA---------------------------------------------A---AGT---AT-TATAAC--------------TTCCAA--CCAA---A-AAGGAAAGTTTTAACTGGCGCCCGAGCAGGGACCGATC--GCGATTACAACGAGGCAAAACG---TCA-TTAC--GAACGCGAA-------------T----TCATTTTCACACG------------------------------ATAGGGCAAAA------------CGATC-CTTAGTGTAAAAATAAT
droBip1 scf7180000391444:6610-6817 + AGC-----------------------------------------------------------------------------------TCAGGGT---------------AG----AATTAATTTAAGTT-TTTCAGTTTCCAAATTACC--------------ATCAATGAAAAAAG-AC-------------AGAAAA--CAAATT-----TGTCA--A---AT-----C-TT--T---------------TTTTGTTA---A---T-AAATATAAATTTAACTGGCGCCCGAGCAGGGACCAT-C--GCGAATACAATAGGGCAAAACC--GTCA-TTAC--GTACGCGAA-------------T----------TTACGCG------------------------------ATAGAGCAAAA------------CGGTTACTAAGTGTA-----AAA
droFic1 scf7180000451747:1729-1973 + CGAA---------------GT---TAACGTCGC--C----GCCAC-CACCCACAGCA-------------------------TATATTAGGGTATCGATAAGCAGA-------------------ATA-TGTCAGTCCCAATTTTGAT--------------TCCAAATAAAGATC-AC---GT--------CTTAA---------------------A---ATTAAAAT-TCTTGT------GT-TC----------A---A---T-ATCCTGGAATTTAACTGGCGCCCGAACAGGGACCAG-C--GCGAGTAAATCCGA-TTAAGTTCGA----T--------------CCGTGCTAATAATC------A----------TTTCGCGTAACTCCGTTGTATTATCCTTAAAAGGATCAACG-------------------------------CGAG
droEle1 scf7180000490337:2676-2909 - CGAC---------------GT---CGACGTCGC--T----GCCCC-AACCCACAGCT-------------------------TAGATCAGGGTATTTTGAAATG-A-------------------ATAAAGTCAGTCTCAAATTGAAC--------------TTCAAAGAAATAAA-TC---GT--------TCAAA---------------------A---ACTTATTT-TT--GG----G--TTT-----------A---A---TTATCCTGGAAATTAACTGGCGCCCGAACAGGGACCAA-C--GCGAATAAAATCGA-TTAAGTTCCT----TT-------------TAGTGCAAATAATTAAAA-TAT---------TTTTGTGCGACTCCGTTGGCTCAAAC------------------------------------------------AT
droRho1 scf7180000777030:5005-5238 + CGAC---------------GT---CGACGTCGC--T----GCCCC-AACCCACAGCT-------------------------TAGATCAGGGAATTTTTAAATG-A-------------------ATAAAATTAGTCTCAAATTGAAC--------------TCCGAATAAATCAA-AC---GT--------TCAAA-------------------------ACTTATTTTTT--GG----GTTT-TT----------A---T---T-ATCCTGGAAATTAACTGGCGCCCGAACAGGGACCAA-C--GCGAGGAAAAACGA-TTAAGTTCCT----TT-------------TAGTGCAAATAATTAAAA-TA----------TTTTGTGCGACTCCGTTGGCCCAAAC------------------------------------------------AT
droBia1 scf7180000297377:860-1062 - CAAA---------------GC---CGACGTCGC--T----GCCTC-AACCCACAGCT-------------------------TTAAATAGGG-ATCGCTATGTAGA-------------------GTAGGGCTAGTTCGGATTTGTAT--------------CTCGAATAAATTAG-AC---AT--------CTTAA-------------------------TCCAATTT-TT--GA---AGT-T-TT----------A---A---T-TATTTGGAAATTAACTGGCGCCCGAACAGGGACCAG-C--GCGAGTAAATCCGA-TTAAGTTCGA----T--------------CAGTGCTAATA---------A----------ATCC---------------------------------------------------------------------GTG
droTak1 scf7180000410809:4137-4357 + CGAC---------------AT---CAACGCCGC--T----GCCCC-AACCCACAGAT-------------------------TAGATCAGGGTATTCCTAAGTAAA-------------------GTAGAATCAGTCCCGTTTTGAAC--------------ATCAAATAAAATACAAC---GT----------GA----------------------A---ACTTAAAT-TT--GG----GTTT-TT----------A---A---T-ATCCTGGAAGTTAACTGGCGCCCGAACTGGGACCAG-C--GCGAGGAAAACCGA-TTAAGTTCGA----TA-------------AAGTGCAAA--ATT------A----------ATTCGCGCAACTCT----------------------TA--------------------------AAT-----TGAG
droEug1 scf7180000408789:551-776 - CGCC---------------GC---TGCCAGCGC--C----GCCGC-CACCCACAGCT-------A-----------------TAAATTAGGG-ATCGATAAGTAAA-------------------GTA-GAGTAGTTCCGATCTGAAT--------------CTCGAATAAATAAG-AC---AT--------CCGAAT-------------TGTA-----------AAAT-TT--GA---AGT-T-TT----------A---A---T-TATTTGGAAATTAACTGGCGCCCGAACAGGGACCAG-C--GCGAGTAAATCCGA-TTAAGTTC-A----T--------------CAGTGCTAA--ATA-A----A----------ATCCGTGCAACTCCGTTGACATATCC------------------------------------------------TT
dm3 chr3LHet:1233387-1233554 + CGAC---------------GC---CGCCGCAGC--C----AACT--------CAGCT-------------------------TAGCTCA---------------------------TTGACCTAAGT--AATCAGTCACAATCTTACA--------------TCTAAATAAAGAAC-AC-------------CGAAAT---------------------------TACTT-TT--GA---AGTGT-TT----------A---A---T-TTATAAAACATTAACTGGCGGCCGAACAGCGACCCG-C--ACGTTAACAGATAA-CTA---------------------------------------------------------------------------------------------------------GCTGACGGC-----------------TT
droSim2 node_78629:7209-7398 + AAC------------------------------------------------------------------------------------TA---------------GAGTAGAACT-----------TTA-ATTTAGTCTTAACTTTAAA--------------CACAATC-AATAAA-GT---AC--------CCAAAA--TAAATT-----TGTAA--A---ATTTATAT-TTTTAT--------------TTTCATCA---A---TAAACTAATAAATTAACTGGCGCCCGAACAGGGACCGG-TA-TATAACATAACAGAGCAAAAAG---CCT-TTAAGTGTTCGCGAA-------------T----------------A------------------------------AAAGAGCAAAA---------------------------------CG
droSec2 scaffold_46:33890-34065 + AAC------------------------------------------------------------------------------------TA---------------GAGTAGAACT-----------TTA-ATTTAGTCTTAACTTTAAA--------------CACAATC-AATAAA-GT---AC--------CCAAAA--TAAATT-----TGTAA--A---ATTTATAT-TTTTAT--------------TTTCATCA---A---TAAACTAATAAATTAACTGGCGCCCGAACAGGGACCGG-TA-TATAACATAACAGAGCAAAAAG---C---------------GAA-------------T----------------A------------------------------AAAGAGCAAAA---------------------------------CG
droYak3 X:21175303-21175519 - CAAC---------------GG---CAGCGCAGC--TCACAGCCAAAGACTCACAGCT-------------------------T--GCTAGGG-ACAGCT---TAGG-------------------GTA-ATTTAGTTGCAAATTGGATTTATACAAATAAAG----------TCGT-------T--------CTTAAC--TGAACT-----C---C--A---ATTTATTT-TATTA--------TTTTTTTACCTTG--CTAA---C-CGCAAAGTAATTAACTGGCGCCCGAACAGGGACCGG-T--GCGCGTACGATACAACAAAACG---TTTTGTAA--GTTCGCG------------------------------------------------------------------------------------------------------------G
droEre2 scaffold_4929:24690049-24690283 - CAAC---------------GC---CAGCGACAC--T----GCTTT---------------------------------------ATTTAGGG-CCAGC---GTAGGGTAG----------------AATATTTAGTCTAAAATTATCA--------------ATCAAAGTAATCGG-TCTGTTG-------ACCG-----------TATAA--TAA--AAACATTTATTT-TTTTAT---AA-----------TCAAAA---A---T-ATTCGTGTTTTTAATTGGCGCCCGAACAGGGACCGC-CACGCGCGTACAACAAAACTAAGTTC----------------GTGTTAAGTGCTGA--AGA------A----------TTCTGCACAGTGA----------------------------------------CGGTTA-------TAAAGAAAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CAAC---------------GC---CAACGTCGT--C----GACTG-A-ACCACAGCT-------------------------CA-ACTAGGG-ATA----------------------GAATTAAGTA-ATTTAGTTGCAAATTTGTT--------------CTTGAATAAAACGG-ACTGCAT--------TTAAGCAG------TAAAATATCA--A--AACATCTTT-TTTTAC---CG--T-----------T--TAAA---TAAAGAAAGAACTTAACTGGCACCCGAGCAGGGACCGG-CT-TCGCGCGCAATACAGCAAAACG---TTTAGTAC--GTGCGTGAT-AC---T-------------------GCAAGTTAAAAGCAGA----------------------------------------GTCGGTTT--AAATAA-----AACGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.AAC---------------GC---CAACGTCGT--C----GACTG-A-...........................................................................................................................................................................................................................................................................................................................................................................................................................2120.501100000
...................................................................................................................................................T--------------CTTGAATAAAACGG-ACTGCAT--------TT.........................................................................................................................................................................................................................................................................24200.408610010
...................................................................................................................................................T--------------CTTGAATAAAACGG-ACTGCAT--------TTAAGC.....................................................................................................................................................................................................................................................................28200.255500000
...................................................................................................................................................................................................AGCAG------TAAAATATCA--A--AACATCTTT-....................................................................................................................................................................................................................................2560.171100000
..................................................................................................................................................................CTTGAATAAAACGG-ACTGCAT--------TTAAGC.....................................................................................................................................................................................................................................................................27200.051100000
.......................................................................................................................................................................................................................................................................................................AGGGACCGG-CT-TCGCGCGC...............................................................................................................................................19200.051100000
...................................................................................................................................................T--------------CTTGAATAAAACGG-ACTGCAT--------TTC........................................................................................................................................................................................................................................................................25200.051100000
....................................................................................................................................................................................................................................................................................................................................AAAACG---TTTAGTAC--GTGCGTGAT-AC---T-------------------GC...............................................................................28200.051100000
....................................................................................................................................................................................................................................................................................................................................AAAACG---TTTAGTAC--GTGCGTGAT-AC---.....................................................................................................25200.051100000
....................................................................................................................................................................................................................................................................................................................................AAAACG---TTTAGTAC--GTGCGTG.............................................................................................................21200.051100000
..................................................................................................................................................TT--------------CTTGAATAAAACGG-ACTGCAT--------T..........................................................................................................................................................................................................................................................................24200.051000010
..................................................................................................................................................TT--------------CTTGAATAAAACGG-ACTGCAT--------TTA........................................................................................................................................................................................................................................................................26200.051100000
..................................................................................................................................TTTAGTTGCAAATTTGTT--------------CTTG.....................................................................................................................................................................................................................................................................................................22200.051000001
...................................................................................................................................................T--------------CTTGAATAAAACGG-ACTGC.....................................................................................................................................................................................................................................................................................20200.051100000
............................................................................................................................................................................................................................................................................................................................AATACAGCAAAACG---TTTAGTAC--GT..................................................................................................................24200.051100000
..........................................................................................................................................................................................................................A--AACATCTTT-TTTTAC---CG--T-----------T--........................................................................................................................................................................................................20200.051100000
................................................................................................................................................................................................................................................CG--T-----------T--TAAA---TAAAGAAAGAACTTAACC...............................................................................................................................................................................26200.051100000
...................................................................................................................................................T--------------CTTGAATAAAACGG-ACTGCAT--------T..........................................................................................................................................................................................................................................................................23200.051000010
..................................................................................................................................................................CTTGAATAAAACGG-ACTGC.....................................................................................................................................................................................................................................................................................19200.051100000
.........................................................................................................................................................................................................................................................................................................................................G---TTTAGTAC--GTGCGTGAT-AC---T-------------------.................................................................................21200.051000001
.............................................................................................................................................................................................................................................................................................................CGG-CT-TCGCGCGCAATACAGCA......................................................................................................................................22200.051100000
droVir3
CAACATCAGCAGCGACGCCGCTGCCAACGCCGC--T----GCCGCTAAGCCACAGTT---------------------------AACTAGGG-CT-------------CC----AATTGATTTAAGTTTATTCAGTTGCAAATTAACA---TAAAAAAAAAG----------TCTT-GC---TT--------TCA------------------TAA--A---AATCATAT-TTTTTTCATCG--TTT-----------A---A---TAAACTTTGGATTTAACTTGCGCCCGAGCAGGGACCGT-CT-CGTGTTACAACAAAATAAAACG---CTT-TTAC--GTACGCGTTA------------G----TCGGTTATA----------------------------------------------------------------------------CGCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................CATCG--TTT-----------A---A---TAAACTTTGGA......................................................................................................................................................................................21200.5010000000000000000000000000006000000004000000000000000000000000000
..................................................................................................................AATTGATTTAAGTTTATTCAGTTG.................................................................................................................................................................................................................................................................................................................................24200.204002000000000000000000000000000001100000000000000000000000000000
..................................................................................................................AATTGATTTAAGTTTATTCAGT...................................................................................................................................................................................................................................................................................................................................22200.153000000000000000000000000000010020000000000000000000000000000000
.............................CCGC--T----GCCGCTAAGCCACAGTT---------------------------.......................................................................................................................................................................................................................................................................................................................................................................................2270.141000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................AATTGATTTAAGTTTATTCAGTT..................................................................................................................................................................................................................................................................................................................................23200.102002000000000000000000000000000000000000000000000000000000000000
..................................................................................................................AATTGATTTAAGTTTATTCAGTTGCAAA.............................................................................................................................................................................................................................................................................................................................28200.102000000000000000000000000002000000000000000000000000000000000000
..................................................................................................................AATTGATTTAAGTTTATTCAGTTGC................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................CATCG--TTT-----------A---A---TAAACTT..........................................................................................................................................................................................17200.051000000000000000000000000000000000000000001000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................CGCGTTA------------G----TCGGTTATA----------------------------------------------------------------------------CGCG21200.051000000100000000000000000000000000000000000000000000000000000000
....................................................................................................................TTGATTTAAGTTTATTCAGTT..................................................................................................................................................................................................................................................................................................................................21200.051000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................TTATTCAGTTGCAAATTAACA---....................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................ACGCGTTA------------G----TCGGTTATA----------------------------------------------------------------------------CGC.21200.051000000000000000000000000000000000000001000000000000000000000000
........................CAACGCCGC--T----GCCGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TAC--GTACGCGTTA------------G----TCGGTTA..................................................................................21200.051000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................TTAAGTTTATTCAGTTGCAAA.............................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000100000000000000000000000
........................................................................................................................TTTAAGTTTATTCAGTTGCAAAT............................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................AATTGATTTAAGTTTATTCAGTTGCAA..............................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................AATTGATTTAAGTTTATTCAGTC..................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000100000000000000000000000000000000
....................CTGCCAACGCCGC--T----GCCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................GTTA------------G----TCGGTTATA----------------------------------------------------------------------------CGCC18200.051000000000000000000000000000001000000000000000000000000000000000
.AACATCAGCAGCGACGCCGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TCG--TTT-----------A---A---TAAACTTTGGA......................................................................................................................................................................................19200.051000000000000000000000000000001000000000000000000000000000000000
droGri2
CAACT--------------GA---CACCGTCGG--C----GACAA-A-ACCGCAACGATCAGCAGAAGCAGCAGTCCGAGGTTAAGTTATGATAAGTTTCAGTT-T-------------------ATAAATTCAGTCTTA-------------------------------ATAAA-AC---AT--------TCAAAC-------------AGAA-----------CAAA-TT--G-----GT---TTT--TTTTATTAAAAACCTC-GAGGACTCGTTTAATTGGCGCCCGAGCAGGGACCGG-T--ACGGAAGTAAAAGT-TATAGTGC------------GTTAGTGAA-------AG----------TG-----------------------------------------------------------------TTTT--AACTAC-----TGCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................................................................................................................................................................................................................................CGCCCGAGCAGGGACCGG-T--ACG....................................................................................................................................................2280.13110
droWil2
TTGT---------------AT---TG-------------------------------------------------------------------------------------------------------------------------------------------TAATAAAAGTG-AC---TT--------TATAA----------------ATAAAA---ATTCATTT-TTT-A---------------ACCCGT---GAG---TGAAGGAAGTGTTTAATTGGCGCCCGAGCAGGGACCCT-GC-T-AAATACAACGTGATC--G----------TGA--GTTAGTGAA-------A--------------------------------------------------------GA--------TACCAGTG----ATTC--GTGACCA-----AAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................T-GC-T-AAATACAACGTGATC--G----------TGA--GT..................................................................................................................25200.10202000
.TGT---------------AT---TG-------------------------------------------------------------------------------------------------------------------------------------------TAATAAAAGTG-AC---TT--------TA.........................................................................................................................................................................................................................................................................24200.05101000
.........................................................................................................................................................................................................................................................................................................................................................TAGTGAA-------A--------------------------------------------------------GA--------TACCAGTG----ATTC--GT.............24200.05101000
..............................................................................................................................................................................................................................................................................................................CT-GC-T-AAATACAACGTGATC--G----------.........................................................................................................................21200.05100100
dp5
AAAC---------------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTTAT-TT---T--------------GTCCTT--CCAA---T-AAGGATAAAATTAACTGGCGCCCGAGCAGGGACCTG-AC-TAGTGAACAACACAACAAAAAG---TTTA---CGTGAACGT-----------------------------------------------------------------------------------------------------------ACGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TAGA---------------TT---T--------------------------------------------------------------------------------------------------------AAGCAGTCACATTCTGATA--------------TTCAATAAAAGCACTTC---GCTAAAGTGAACAGAA--TCA----------AAAAAA---ACTTTTAT-TT---T--------------GTCCGT--CGAA---T-AAGGATAAAATTTACTGGCGCCCGAGCAGGGACCTG-AC-TAGTGAACAACACAGCAAAAAG---TTTAGTAC--GTTCGCGAAAAC--------------------------------------------------------------TGCAAAAACTTGCAGCCGTCGGTCT-------CA-----ATASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAAACTTGCAGCCGTCGG....................2230.331010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAAACTTGCAGCCGTCG.....................2130.331010000
.............................................................................................................................................TCTGATA--------------TTCAATAAAAGCACTTC---GC...................................................................................................................................................................................................................................................................................2660.171010000
droAna3
GA-C---------------TC---TGGTGCCGCTCT----GCCGAAAAGCCTTAGT--------------------------TAGCTCAGGGT---------------AG----AATTGGTTTAAGTT-TTTCAGTTTCAAAATTACC--------------ATAAAAGAATA---------------------------------------------A---AGT---AT-TATAAC--------------TTCCAA--CCAA---A-AAGGAAAGTTTTAACTGGCGCCCGAGCAGGGACCGATC--GCGATTACAACGAGGCAAAACG---TCA-TTAC--GAACGCGAA-------------T----TCATTTTCACACG------------------------------ATAGGGCAAAA------------CGATC-CTTAGTGTAAAAATAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................TCACACG------------------------------ATAGGGCAAAA------------CGATC-CT...............25170.061100000
.......................................................................................................................................................................................................................................................................................TAACTGGCGCCCGAGCAGGGACCGA...........................................................................................................................................................25200.051010000
droBip1
AGC-----------------------------------------------------------------------------------TCAGGGT---------------AG----AATTAATTTAAGTT-TTTCAGTTTCCAAATTACC--------------ATCAATGAAAAAAG-AC-------------AGAAAA--CAAATT-----TGTCA--A---AT-----C-TT--T---------------TTTTGTTA---A---T-AAATATAAATTTAACTGGCGCCCGAGCAGGGACCAT-C--GCGAATACAATAGGGCAAAACC--GTCA-TTAC--GTACGCGAA-------------T----------TTACGCG------------------------------ATAGAGCAAAA------------CGGTTACTAAGTGTA-----AAASizeHit CountTotal NormTotal
No Reads
droFic1
CGAA---------------GT---TAACGTCGC--C----GCCAC-CACCCACAGCA-------------------------TATATTAGGGTATCGATAAGCAGA-------------------ATA-TGTCAGTCCCAATTTTGAT--------------TCCAAATAAAGATC-AC---GT--------CTTAA---------------------A---ATTAAAAT-TCTTGT------GT-TC----------A---A---T-ATCCTGGAATTTAACTGGCGCCCGAACAGGGACCAG-C--GCGAGTAAATCCGA-TTAAGTTCGA----T--------------CCGTGCTAATAATC------A----------TTTCGCGTAACTCCGTTGTATTATCCTTAAAAGGATCAACG-------------------------------CGAGSizeHit CountTotal NormTotal
No Reads
droEle1
CGAC---------------GT---CGACGTCGC--T----GCCCC-AACCCACAGCT-------------------------TAGATCAGGGTATTTTGAAATG-A-------------------ATAAAGTCAGTCTCAAATTGAAC--------------TTCAAAGAAATAAA-TC---GT--------TCAAA---------------------A---ACTTATTT-TT--GG----G--TTT-----------A---A---TTATCCTGGAAATTAACTGGCGCCCGAACAGGGACCAA-C--GCGAATAAAATCGA-TTAAGTTCCT----TT-------------TAGTGCAAATAATTAAAA-TAT---------TTTTGTGCGACTCCGTTGGCTCAAAC------------------------------------------------ATSizeHit CountTotal NormTotal
No Reads
droRho1
CGAC---------------GT---CGACGTCGC--T----GCCCC-AACCCACAGCT-------------------------TAGATCAGGGAATTTTTAAATG-A-------------------ATAAAATTAGTCTCAAATTGAAC--------------TCCGAATAAATCAA-AC---GT--------TCAAA-------------------------ACTTATTTTTT--GG----GTTT-TT----------A---T---T-ATCCTGGAAATTAACTGGCGCCCGAACAGGGACCAA-C--GCGAGGAAAAACGA-TTAAGTTCCT----TT-------------TAGTGCAAATAATTAAAA-TA----------TTTTGTGCGACTCCGTTGGCCCAAAC------------------------------------------------ATSizeHit CountTotal NormTotal
No Reads
droBia1
CAAA---------------GC---CGACGTCGC--T----GCCTC-AACCCACAGCT-------------------------TTAAATAGGG-ATCGCTATGTAGA-------------------GTAGGGCTAGTTCGGATTTGTAT--------------CTCGAATAAATTAG-AC---AT--------CTTAA-------------------------TCCAATTT-TT--GA---AGT-T-TT----------A---A---T-TATTTGGAAATTAACTGGCGCCCGAACAGGGACCAG-C--GCGAGTAAATCCGA-TTAAGTTCGA----T--------------CAGTGCTAATA---------A----------ATCC---------------------------------------------------------------------GTGSizeHit CountTotal NormTotal
No Reads
droTak1
CGAC---------------AT---CAACGCCGC--T----GCCCC-AACCCACAGAT-------------------------TAGATCAGGGTATTCCTAAGTAAA-------------------GTAGAATCAGTCCCGTTTTGAAC--------------ATCAAATAAAATACAAC---GT----------GA----------------------A---ACTTAAAT-TT--GG----GTTT-TT----------A---A---T-ATCCTGGAAGTTAACTGGCGCCCGAACTGGGACCAG-C--GCGAGGAAAACCGA-TTAAGTTCGA----TA-------------AAGTGCAAA--ATT------A----------ATTCGCGCAACTCT----------------------TA--------------------------AAT-----TGAGSizeHit CountTotal NormTotal
No Reads
droEug1
CGCC---------------GC---TGCCAGCGC--C----GCCGC-CACCCACAGCT-------A-----------------TAAATTAGGG-ATCGATAAGTAAA-------------------GTA-GAGTAGTTCCGATCTGAAT--------------CTCGAATAAATAAG-AC---AT--------CCGAAT-------------TGTA-----------AAAT-TT--GA---AGT-T-TT----------A---A---T-TATTTGGAAATTAACTGGCGCCCGAACAGGGACCAG-C--GCGAGTAAATCCGA-TTAAGTTC-A----T--------------CAGTGCTAA--ATA-A----A----------ATCCGTGCAACTCCGTTGACATATCC------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
dm3
CGAC---------------GC---CGCCGCAGC--C----AACT--------CAGCT-------------------------TAGCTCA---------------------------TTGACCTAAGT--AATCAGTCACAATCTTACA--------------TCTAAATAAAGAAC-AC-------------CGAAAT---------------------------TACTT-TT--GA---AGTGT-TT----------A---A---T-TTATAAAACATTAACTGGCGGCCGAACAGCGACCCG-C--ACGTTAACAGATAA-CTA---------------------------------------------------------------------------------------------------------GCTGACGGC-----------------TTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................TAAATAAAGAAC-AC-------------CGAAAT---------------------------TACTT-T...................................................................................................................................................................................................................................2631.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TAGCTCA---------------------------TTGACCTAAGT--AATCAGT...................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................ACATTAACTGGCGGCCGAACAGCGAC..............................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................T-TT--GA---AGTGT-TT----------A---A---T-TTATAAAACATT...................................................................................................................................................................................2730.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TACA--------------TCTAAATAAAGAAC-AC-------------CGAAA......................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TACA--------------TCTAAATAAAGAAC-AC-------------CGAAAT---------------------------..........................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TT--GA---AGTGT-TT----------A---A---T-TTATAAAACATT...................................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TAAATAAAGAAC-AC-------------CGAAAT---------------------------TACT......................................................................................................................................................................................................................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................T-TT--GA---AGTGT-TT----------A---A---T-TTATAAAACAT....................................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GCAGC--C----AACT--------CAGCT-------------------------TCA......................................................................................................................................................................................................................................................................................................................................................................................18160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAC------------------------------------------------------------------------------------TA---------------GAGTAGAACT-----------TTA-ATTTAGTCTTAACTTTAAA--------------CACAATC-AATAAA-GT---AC--------CCAAAA--TAAATT-----TGTAA--A---ATTTATAT-TTTTAT--------------TTTCATCA---A---TAAACTAATAAATTAACTGGCGCCCGAACAGGGACCGG-TA-TATAACATAACAGAGCAAAAAG---CCT-TTAAGTGTTCGCGAA-------------T----------------A------------------------------AAAGAGCAAAA---------------------------------CGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................AGGGACCGG-TA-TATAACATAACAGAGCA......................................................................................................................................2812.00200000000000020000
.......................................................................................................................................................................................................................................................................................TAACTGGCGCCCGAACAGGGAC..............................................................................................................................................................22201.2024000023000001000000
.........................................................................................................................................................................................................................................................................................ACTGGCGCCCGAACAGGGACC.............................................................................................................................................................21201.2024000023000001000000
...........................................................................................................................................................................................................................................................................................TGGCGCCCGAACAGGGACC.............................................................................................................................................................19201.1523000000000023000000
............................................................................................................................................................................................................................................................................AACTAATAAATTAACTGGCGCCCGAAC....................................................................................................................................................................2711.00100000001000000000
..................................................................................................................................................................................................................................................................................TAAATTAACTGGCGCCCGAACAGGGAC..............................................................................................................................................................2711.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................TAACAGAGCAAAAAG---CCT-TTAAGTGTT.................................................................................................................2711.00100000000001000000
.......................................................................................TA---------------GAGTAGAACT-----------TTA-ATTTAGTCTT................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
..........................................................................................................GTAGAACT-----------TTA-ATTTAGTCTT................................................................................................................................................................................................................................................................................................................................2121.00200000000200000000
..................................................................................................................................................................................................................................................................................................................................................TAAGTGTTCGCGAA-------------T----------------A------------------------------AAAGAGCA......................................2411.00100000000001000000
.......................................................................................................................................................................................................................................................................................TAACTGGCGCCCGAACAGGGACCGG-..........................................................................................................................................................2550.40200000000002000000
.......................................................................................................................................................................................................................................................................................TAACTGGCGCCCGAACAGGGACC.............................................................................................................................................................23200.35700000000007000000
...........................................................................................................................................................................................................................................................................................TGGCGCCCGAACAGGGACCG............................................................................................................................................................2080.25200000000002000000
........................................................................................................................................................................................................................................................................................AACTGGCGCCCGAACAGGGACCGT-..........................................................................................................................................................2450.20100010000000000000
.......................................................................................................................................................................................................................................................................................TAACTGGCGCCCGAACAGGGACCG............................................................................................................................................................2450.20100000000001000000
...........................................................................................................................................................................................................................................................................................TGGCGCCCGAACAGGGACCGG-..........................................................................................................................................................2150.20100000000001000000
...........................................................................................................................................................................................................................................................................................TGGCGCCCGAACAGGGAC..............................................................................................................................................................18200.15300000000003000000
...........................................................................................................................................................................................................................................................................................TGGCGCCCGAACAGGGACCGT-..........................................................................................................................................................2190.11100000000001000000
.......................................................................................................................................................................................................................................................................................TAACTGGCGCCCGAACAGGGA...............................................................................................................................................................21200.10200000000020000000
...........................................................................................................................................................................................................................................................................................TGGCGCCCGAACAGGGA...............................................................................................................................................................17200.10200000000002000000
..........................................................................................................................................................................................................................................................................................CTGGCGCCCGAACAGGGACA.............................................................................................................................................................20200.05100000000001000000
...........................................................................................................................................................................................................................................................................................TGGCGCCCGAACAGG.................................................................................................................................................................15200.05100000000001000000
........................................................................................................................................................................................................................................................................................AACTGGCGCCCGAAC....................................................................................................................................................................15200.05100000000001000000
........................................................................................................................................................................................................................................................................................AACTGGCGCCCGAACAGGGA...............................................................................................................................................................20200.05100000000001000000
droSec2
AAC------------------------------------------------------------------------------------TA---------------GAGTAGAACT-----------TTA-ATTTAGTCTTAACTTTAAA--------------CACAATC-AATAAA-GT---AC--------CCAAAA--TAAATT-----TGTAA--A---ATTTATAT-TTTTAT--------------TTTCATCA---A---TAAACTAATAAATTAACTGGCGCCCGAACAGGGACCGG-TA-TATAACATAACAGAGCAAAAAG---C---------------GAA-------------T----------------A------------------------------AAAGAGCAAAA---------------------------------CGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................TAACTGGCGCCCGAACAGGGACC.............................................................................................................................................................23200.0510010
droYak3
CAAC---------------GG---CAGCGCAGC--TCACAGCCAAAGACTCACAGCT-------------------------T--GCTAGGG-ACAGCT---TAGG-------------------GTA-ATTTAGTTGCAAATTGGATTTATACAAATAAAG----------TCGT-------T--------CTTAAC--TGAACT-----C---C--A---ATTTATTT-TATTA--------TTTTTTTACCTTG--CTAA---C-CGCAAAGTAATTAACTGGCGCCCGAACAGGGACCGG-T--GCGCGTACGATACAACAAAACG---TTTTGTAA--GTTCGCG------------------------------------------------------------------------------------------------------------GSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................CAAAGACTCACAGCT-------------------------T--GCTAGGG-ACA...........................................................................................................................................................................................................................................................................................................................................................................26111.4516000000000016
................................................................................................................................................................................................................................................................................AAGTAATTAACTGGCGCCCGAACAGG.................................................................................................................................................................2691.1110000000000010
.............................................................................................................................................................TAAAG----------TCGT-------T--------CTTAAC--TGAAC..............................................................................................................................................................................................................................................................21200.5511011000000000
...................................................................................................................................................................................................................................................................................TAATTAACTGGCGCCCGAACA...................................................................................................................................................................21100.30303000000000
....................................................................................................................................................................................................................................................................................AATTAACTGGCGCCCGAACAG..................................................................................................................................................................21110.27303000000000
................................................................................................................................................................................................................................................................................AAGTAATTAACTGGCGCCCGA......................................................................................................................................................................21110.18202000000000
.........................................................................................................................................................CAAATAAAG----------TCGT-------T--------CTTAAC--T..................................................................................................................................................................................................................................................................21190.16312000000000
.....................................................................................................................................................................................................................................................................................ATTAACTGGCGCCCGAACAGG.................................................................................................................................................................21200.15303000000000
.....................................................................................................................................................................................................................................................................AA---C-CGCAAAGTAATTAACTGGCGCC.........................................................................................................................................................................2570.14101000000000
............................................................................................................................................................ATAAAG----------TCGT-------T--------CTTAAC--TGAA...............................................................................................................................................................................................................................................................21200.10202000000000
......................................CAGCCAAAGACTCACAGCT-------------------------T--GCT...................................................................................................................................................................................................................................................................................................................................................................................23100.10101000000000
..................................................................................................................................................................................................................................................................................GTAATTAACTGGCGCCCGAACA...................................................................................................................................................................22100.10101000000000
................................................................................................................................................................................................................................................................................AAGTAATTAACTGGCGCCCGAA.....................................................................................................................................................................22110.09101000000000
....................................CACAGCCAAAGACTCACAGCT-------------------------T--G.....................................................................................................................................................................................................................................................................................................................................................................................23130.08101000000000
..........................................................................................................................................................................................................................................................TACCTTG--CTAA---C-CGCAAAGTAAT....................................................................................................................................................................................23140.07101000000000
.....................................................................................................................................................................................................C--TGAACT-----C---C--A---ATTTATTT-TATTA--------TT.....................................................................................................................................................................................................................25150.07101000000000
.....................................................................................................................................................TATACAAATAAAG----------TCGT-------T--------CTTAAC--TG.................................................................................................................................................................................................................................................................26150.07101000000000
.....................................................................................................................................................................................................C--TGAACT-----C---C--A---ATTTATTT-TAT.................................................................................................................................................................................................................................21160.06110000000000
.....................................................................................GCTAGGG-ACAGCT---TAGG-------------------GTA-A.........................................................................................................................................................................................................................................................................................................................................21170.06101000000000
........................................................................................................GG-------------------GTA-ATTTAGTTGCAAATTGGATT......................................................................................................................................................................................................................................................................................................................25170.06101000000000
.........................................................................................................................................................CAAATAAAG----------TCGT-------T--------CTTAAC--TA.................................................................................................................................................................................................................................................................22190.05101000000000
..............................................................................................................................................................AAAG----------TCGT-------T--------CTTAAC--TGAACT-----........................................................................................................................................................................................................................................................21190.05101000000000
.........................................................................................................................................................................................................................................................................................ACTGGCGCCCGAACAGGGACC.............................................................................................................................................................21200.05100000100000
.......................................................................................................................................................................................................................................................................................TAACTGGCGCCCGAACAGGGACCG............................................................................................................................................................24200.05100100000000
.......................................................................................TAGGG-ACAGCT---TAGG-------------------GTA-ATT.......................................................................................................................................................................................................................................................................................................................................21200.05101000000000
...........................................................................................................................................................AATAAAG----------TCGT-------T--------CTTAAC--TGA................................................................................................................................................................................................................................................................21200.05101000000000
.............................................................................................................................................................TAAAG----------TCGT-------T--------CTTAAC--TGAA...............................................................................................................................................................................................................................................................20200.05101000000000
...........................................................................................................................................................AATAAAG----------TCGT-------T--------CTTAAC--TGAA...............................................................................................................................................................................................................................................................22200.05101000000000
.......................................................................................................................................................................................................................................................................................TAACTGGCGCCCGAACAGGGAC..............................................................................................................................................................22200.05100000010000
...........................................................................................................................................................................................................................................................................................TGGCGCCCGAACAGGGACCGG-T--.......................................................................................................................................................22200.05101000000000
droEre2
CAAC---------------GC---CAGCGACAC--T----GCTTT---------------------------------------ATTTAGGG-CCAGC---GTAGGGTAG----------------AATATTTAGTCTAAAATTATCA--------------ATCAAAGTAATCGG-TCTGTTG-------ACCG-----------TATAA--TAA--AAACATTTATTT-TTTTAT---AA-----------TCAAAA---A---T-ATTCGTGTTTTTAATTGGCGCCCGAACAGGGACCGC-CACGCGCGTACAACAAAACTAAGTTC----------------GTGTTAAGTGCTGA--AGA------A----------TTCTGCACAGTGA----------------------------------------CGGTTA-------TAAAGAAAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................T----GCTTT---------------------------------------ATTTAGGG-CCAGC---GTAGGG................................................................................................................................................................................................................................................................................................................................................................2540.2511000000
......................................................................................TTAGGG-CCAGC---GTAGGGTAG----------------A............................................................................................................................................................................................................................................................................................................................................2140.2511000000
...........................CGACAC--T----GCTTT---------------------------------------ATTTAGGG-C.............................................................................................................................................................................................................................................................................................................................................................................2140.2511000000
...........................................TT---------------------------------------ATTTAGGG-CCAGC---GTAGGGTAG----------------AA...........................................................................................................................................................................................................................................................................................................................................2640.2511000000

Generated: 05/18/2015 at 02:54 AM