ID:

dmo_2539

 Coordinate:

scaffold_6680:19132247-19132397 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.1 -21.8 -21.8

Flybase annnotation

CDS [Dmoj\GI13761-cds]; exon [dmoj_GLEANR_13661:8]; intron [Dmoj\GI13761-in]

Repeatable elements

NameClassFamilyStrand
ROO_I-intLTRPao+
TART_DVLINEJockey+
mature
  1. scaffold_6473:3658169-3658188 +
  2. scaffold_6473:5975200-5975219 +
  3. scaffold_6473:7942723-7942742 +
  4. scaffold_6473:11669190-11669209 +
  5. scaffold_6473:15509337-15509356 +
  6. scaffold_6473:16502613-16502632 +
  7. scaffold_6496:2808068-2808087 +
  8. scaffold_6496:16381787-16381806 +
  9. scaffold_6496:17102083-17102102 +
  10. scaffold_6500:512453-512472 +
  11. scaffold_6500:1605479-1605498 +
  12. scaffold_6500:2766488-2766507 +
  13. scaffold_6500:8655817-8655836 +
  14. scaffold_6500:14672131-14672150 +
  15. scaffold_6500:28386231-28386250 +
  16. scaffold_6540:18380981-18381000 +
  17. scaffold_6540:31593139-31593158 +
  18. scaffold_6540:31800969-31800988 +
  19. scaffold_6654:1455768-1455787 +
  20. dmo_2539  scaffold_6680:19132327-19132346 +
  21. scaffold_1798:2513-2532 +
  22. scaffold_6328:975670-975689 +
  23. scaffold_6328:1428852-1428871 +
  24. scaffold_6359:3078579-3078598 +
  25. scaffold_6473:692092-692111 +
  26. scaffold_6473:2071440-2071459 +
  27. scaffold_6473:11173776-11173795 +
  28. scaffold_6473:12071067-12071086 +
  29. scaffold_6473:12466701-12466720 +
  30. scaffold_6496:5447847-5447866 +
  31. scaffold_6496:5968566-5968585 +
  32. scaffold_6496:18201706-18201725 +
  33. scaffold_6500:22055583-22055602 +
  34. dmo_1873  scaffold_6540:9009702-9009721 +
  35. scaffold_6540:13916809-13916828 +
  36. scaffold_6540:18103317-18103336 +
  37. scaffold_6540:33128134-33128153 +
  38. scaffold_6654:1116014-1116033 +
  39. scaffold_6680:2049191-2049210 +
  40. scaffold_6680:8176327-8176346 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCAACAGCAACAGCTAAGTAAACAGCAATCACATTAACAGCAGCGGCAACAACAACAACAACAACTCAAATGCTACACTTGAAAATGCAAAATCTGCTGATCATCATATTCATCATCATCAGCTACAGCAGCAGCAGCAACAGCAGCAGCAACAACAACAACAACGCCATCGACAACAACAGTTCGAGCTGCCACTTTGAGGCGCATCGTTGCCAAATCGATGTGAGTCAAGAGCCACGGCCTGGCTATCG
**************************************************..............((((((((((....(((....(((.......((((((................)))))).......)))....))).))))(((((...................((((..((....)))))))))))...))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
 V056
head
 V110
male body
...............................................................................................................................................................................................CTACTTTGAGGCGCATCTTTG....................................... 21 2 1 1.00 1 1 0 0 0
...................................................................................................................TCATAAGCTACAGCCGCAGCAGT................................................................................................................. 23 3 6 0.17 1 0 0 1 0
..................................................................................................................................GCAGCAGCAACAGCAGCAGC..................................................................................................... 20 0 20 0.10 2 0 2 0 0
........................................CAGCGGCAACAACAACAACAAC............................................................................................................................................................................................. 22 0 20 0.10 2 1 0 0 1
....................................ACAGCAGCGGCAACAACA..................................................................................................................................................................................................... 18 0 19 0.05 1 1 0 0 0
...........................................................................................................................................ACAGCAGCAGCAACAACA.............................................................................................. 18 0 20 0.05 1 0 1 0 0
.........................................AGCGGCAACAACAACAACAA.............................................................................................................................................................................................. 20 0 20 0.05 1 0 1 0 0
.......................................................................................................................................AGCAACAGCAGCAGCAACA................................................................................................. 19 0 20 0.05 1 0 1 0 0
...............................................................................................................................GCAGCAGCAGCAACAGCAGCAGCAACAAC............................................................................................... 29 0 20 0.05 1 1 0 0 0
...............................................................................................................................GCAGCAGCAGCAACAGCAGCAGCAAC.................................................................................................. 26 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

CGTTGTCGTTGTCGATTCATTTGTCGTTAGTGTAATTGTCGTCGCCGTTGTTGTTGTTGTTGTTGAGTTTACGATGTGAACTTTTACGTTTTAGACGACTAGTAGTATAAGTAGTAGTAGTCGATGTCGTCGTCGTCGTTGTCGTCGTCGTTGTTGTTGTTGTTGCGGTAGCTGTTGTTGTCAAGCTCGACGGTGAAACTCCGCGTAGCAACGGTTTAGCTACACTCAGTTCTCGGTGCCGGACCGATAGC
**************************************************..............((((((((((....(((....(((.......((((((................)))))).......)))....))).))))(((((...................((((..((....)))))))))))...))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body
........................................................................................................................................................................TAGCTGTTGCTGACAAGCAC............................................................... 20 3 8 0.13 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6680:19132197-19132447 + dmo_2539 GCAA-CAGCAACAGCTAAGTAAACA------GCAATCA----------------------CATT-A------AC------AGCAGCGGCAA------C---AACAACAACAACA--------A----CTCAAA--TG---------CT--------------------------------------------------------------------------------------------------------A-------CACTTGAAAATGCAAAATCTGCTGATCATCATATTCATCA---------------------------------------T----CATCAGCT---AC------------------------------------------AGCAGCAGCA---GC------------------------AACAGC---------AGCAGCAACAACA---------ACAACAACGCCATC----------------GA-CAACAACAG---T-TCGAGCTGCCACTTT-GAGGCGCAT----C---------------GTTGCCAAATCGATGTGAG--------TCAA---GAG----------------------------------------------------------------------------------------------------------------------------CCACGGCCTGGCTATCG
droVir3 scaffold_13049:18344533-18344756 + GCAA-CAGCTACGCAA------ACA------ACAATCACAT-CAA---------------CAAC-A------AC---------------------------AACAA---------------------CTCAGA--TG---------CTC---------------------------------------------------------------------------------------------------------------CACTTGACAATGCAAAATCTGCTTATCATCATTTTCATCA---------------------------------------T----CATCAGCC---GG------------------------------------------AGCAGCAGCA---GC------------------------AGCAGC---------AGCAGCAGCAGCAGCAGCCGGAGCAGC---AA-----------------------------CAT---T-TCGAGCTGCCACTAT-GAGGCACAT----C---------------GTTGCGAAATCGATGTGCT--------TCAA---GTG----------------------------------------------------------------------------------------------------------------------------CCTCAGCCTGGCTATCG
droGri2 scaffold_15110:9300007-9300234 - ACAA-CAGCTAAGTAA------ACA------GCAACGGCAA-TCA---------------CAAC-A------AC------------AACGA------C---GACTACAAA-----------------------------------------------------------------CA-----------------------------------------------------------------------------------CACTTGACAATGCAAAAACTGCATATCATCATTTTCATCA---------------TCATCA-------------------TAGTCA---TCG---TCA------------------GC---------------------AGCAGCAGCA---------------------------------GC---------AGCAGCAGCAGCATTAGTAACAGCAGT---AATTC--------------------------------T-TCAAACTGCCACTTT-GAGGCACAT----C---------------GTTGCCAAATCGATGTGAT--------TCAA---GAA----------------------------------------------------------------------------------------------------------------------------TCCCCACCTAGCCATCG
droWil2 scf2_1100000004952:508065-508322 + GCAA-CAACAACAGCA------GCA------ACAAATGCAA-CTG---------------CAAC-A------AC------AACAGCAGCAACAAGTGCAACA---------GCA---AC------A----------------GCAGCAACA-AATG----CAACTGCAACAACAA---------------------------CAGCAGCAACAATTGCAGCATCAGCAACAGCAACAGCAGC----------------------------------------------------------------------------------------------------------------------AACAAATGCAACAGCAAC---------------------AGCAACAGCA---------------------------------GC---------AACAATTGCAGCAACAGCAACAGCAG-----------------------------------CAACAAA-TGCAACTGCAACAACAACA------------------GCAGCCACAATGCCA---------GCA--------ACAG---CAG----------------------------------------------------------------------------------------------------------------------------CTGCAGCTCGAATACCG
dp5 XL_group1a:6888088-6888344 + CCAG-CAGCAGCGGCA------CTG------GCAGCAGCAG-CAG---------------CAGC-A------GC------AGCAGCGGCAG------C---AGCAGCA-----------GCA--------------------G--------------------------CAGCGGCA------------------------------------------------------------------CTGCCAGCAG---------------------------------------------------------CAGGAGCA----------------------------------GCC---GCCGC---------------TGCAGCAGGAGCGAC------AG---CAGCA---GCAGGAGCGACAGCAGCAGCAGGAGCGACAGC---------AGCAGCAGGAGCGA------CAGCAG-----------------------------------CAG---C-AGGAGC------------------------------------GACAG-----------------------------------CAGCAGCAGGCGGCTTCAGCTGCGACGCAGGATTCTCAGTTTGATGAGAATCA--------------------------------------------GGCTGAACGGT---------------------TCCA---GGAGA
droPer2 scaffold_25:402312-402549 - GCAG-CAGCAGCAGCA------GCA------GCAGCAGCAG-TAC---------------CAGC-A------GC------------AGCAG---GAGCAGGA---GCA---------GC------A----------------GCAGTACCA-GAAG----CAGCAGCAGCAGCAGCAGTACCAGAAGC------A---------------------GCAGCATCAGCAGCAGCAGCAGCAGTACC---------------------------------------AACAGCAGCA------GGAGCA---------------------------------G-------------------GA------------------------------------------GCAGCA---------------GCAGTGGG------AACAGC---------AGCAGCAACGGCA--------------------------G-------------------------------CGGCAGCAGTACCAGCA------------------GCAGCGGCAGTGCCAGCA-----------------GCAG---GAG----------------------------------------------------------------------------------------------------------------------------CAGCAGCC--GCTGCAG
droAna3 scaffold_13337:4369055-4369290 - CCAG-CAGCAGCAGCA------ACA------GCAACAGCAG-CAA---------------CAGC-A------AC---------------------------AGCAGCATCAGCAACAAT------T----------------GCA--------------------------ACAACAGA---------------------------------------------------------------GCTACCTGCGA------------------------------------------------------------CAGCAAC----------------------------------A---ACGGCAAT------------TGCAGTGGGAGC---------AGCAGCAGCA---GC------------------------AACAGC---------AACACCAACAGCAA------CAGCTTC---AACATCAACTA------------ACCAA---CAG---C-TCCAGCG----------------------------------------------------------------------------------------------------------------AGTTTGATGAGTTCCACTGGCCCAGCAAGCAGACTGGCGGCGAAA-----------CC------------------------------CTGGGCGGAAAGATCT
droBip1 scf7180000394524:3623-3880 + GCAG-CAGCAGCAGTCTCTCCAGCA------GCAGTCG----------------------CTTC-AGCAGCAGCAGCAGCACAACCAGCAA------C---T---------GCA-----GCA--------------------C--------------------------CAGCAGCA------CAGCCAACAGCTGCAGCCACACCAGCAGCAGG---------------------------GCC---------------------------------------AGCATCAGCT------CCAGCA---------------------------------G----CAGCAGC---CCC---AGCACATCCACC------------------------------------------------------------------AGCTGC---------AGCAGCAGCAGCAGCAG---CAACAG-----------------------------------------------------------------------------------------------------------------------------CAGCAGCAAGTGGC------------------------------------------------------------CAACAAGATGCTCATCATACCGAAGCCTATCG---AGTCGATGATGCCCAGT-CCGCCGGACAAGCA
droKik1 scf7180000302398:418602-418825 - GCAA-CACCAGCAGCA------GCA------ACAACATCAA-CAG---------------CAGC-A------GC---------------AG------C---AACACCACCAGCAACA--ACA--------------------C--------------------------CAGCAACAAC---------------------------------------------------------------ACCACCAG------------------------------------------------------------CAGCAGCA----------------------------------TCA---GCAGCTTACGCAACAGCAAC---------------------TGCAGCAGCA------GCAACAACAGCAGCAACATCTCCAGCAGC---------AGCAGCAACATCTC-----------------------------------------CAG---CA------------------------------------------------------------------------------ACAG------CAACAGCAGGCCAC------------------------------------------------------------CAACAAAATGCTGATCATACCCAAGCCCATAG---A--------------------------GTCGA
droFic1 scf7180000453807:186557-186796 + ACAC-CAGCAGCAGCA------ACA------GCAACAACAG-CAA---------------CA-------------------GCAGCAGCAA------C---TACAGCAGCAACA------------------------------------------------------------ACAGA---------------------------------------------------------------GCTGCCTGCGA------------------------------------------------------------CAGCAGCA-------------------------------A------AGACAAT------------TGCAGTGGGAACAGCAACAGCAACATCAGCA---GC------------------------AACAGC---------AGCAGCAACATCAG------CAGCTGC---AACACCAACTG------------ACAAA---CAG---C-TCGAGCG----------------------------------------------------------------------------------------------------------------AATTTGATGAGTACCACTGGCCGAGCAAGCAGACGGGCGGCGAGA-----------GTCTGGG---------------------T--------GGTGGCAAAAT
droEle1 scf7180000491104:2396307-2396576 - GCAG-CAGCAACAGGT------TGCGTACAATCCACAACAA-CAA---------------CA-------------------GCAGCAGCAG------C---AGCAGCAACAACA------------------------------------------------------------ACACT---------------------------------------------------------------CCTCACTGCGACGCAGTTCACGTGGCAAGACGGGTTCT-----TGTGTGAGTTCGGCA---------------------------------------G----CAGCAGC----AC------------------------------------------AGCAGCAGCAGCAGC---------------------------AAC---------ACCACCAGCAG---------CAACAGCAACAT-AGCAACGCTGCTGCTGCTGTA-CAACAGCAA---T-T---GC-----------------------------------------TGCCACCGCCTG-----GTACCTAT----CAA---TACCAA------------------------------------------------------------CAGGTGGGCGGCAATA-----------CCGTTGT---------------------A--------GTTGCCGTGCG
droRho1 scf7180000779169:162122-162384 + GCAA-CATCAGCAGCA------TTC------GCAACAGATATTAC---------------CAGC-T------GG---------CTTGGTAA--ATGGCAATG---GCA---------AC------G----------------GCAA---CACGATG----CAACAACAACAGCAGCG------CA---------------------------------------------------------CCAGTCAGCAGC------------------------------------ACAT------A----------------------TTTGTCTGCCCCACTAGCAACCA---GCA---ACTCCTGC---------------TGCAACATCAACAAC------AG---CAGCA---GCAGCAACAACAACAACAGCAACAAACCAA--------------------------------------------------------------------A---CAG---C-------------GCCAGGC--GCAAATAAAGTTGCCAATAAAGTCAACG--------GTG-GCA--------CCAG---GAG----------------------------------------------------------------------------------------------------------------------------TAACGGC--AGCAACTG
droBia1 scf7180000302113:3675502-3675729 + GCAG-CAGCAGCAGCA------GCA------ATTTGCAGCC-AGG---------------CAGC-A------AC------AGCAGCAGCAC------C---ATCAGCAGCAGCA--------AT----------------------------------------------------------------------------------------------------------------------CCTACCAGGCGC------------------------------------AGAT------ACACCAGCAGCCGCAGCA----------------------------------ACA---TCCGCATC------------CGCATCCCCATCAGC------AG---CAGCA---GCAGCAGCACCAGCAGCAACATCAGACGATGC---------AGCAGCAGCATG-----------------------------------------GCCAG---CAG-------------G-------------CGG-----------------------GGCAGATGGGTGGCTA--------CCAG---AAG----------------------------------------------------------------------------------------------------------------------------CCGCCACCTTTGACCCG
droTak1 scf7180000415380:455711-455923 + GCAA-CAGCAACAACA------GCA------GCAACCA----------------------CTTGGAGCA---GC---------------A--------------------------------AACGACAGAAA--TG---------ATC------TTAAAT---GAATG---------------------------------CGGAAGTTTTTCTTGGGGTTT------------------------------------------------------------------------CG-------------------------------------------TAACCA---GCT---ACA------------------GC---------------------AGCAGCAACAGCAAC---------------------------AGC---------AGCAACTGCAG---------CAGCAGC---AACACCAAAG-------------------------------AGGTCGCAATTCCAGTG------------------GCAGCTATGTTGCTACATTTAT-----GTACATGT----GTT---TGTCG----G-------------------------------------------------------------------------------------------------CCA------------------------GTCGATG
droEug1 scf7180000409110:1000215-1000412 - GCAC-CAGCAGCAGCA------GCA------GCAACAGCAA-CAG---------------CAGC-A------GC---------------AA---CAAC---AGCAGCAGCAGCA-----AGA--------------------CC-----------------AGCGAACCACTTTGC------------------------------------------------------------------------------------------------------------ATCCTCAAAT------TCACCA---------------------------------T----CATCATC---AAC---AGCAAATGCAAC---------------------------------------------------------------------AGCAGCAGCAGCAGCAGCAGCAG---------CAACAAC---AATCC----------------------------------------------------------------------------------------------------------TCGAGAG---CGGCG----G-------------------------------------------------------------------------------------------------CCAGTCCATTATCACCACTACGTCCTGGAAATCC
dm3 chr3R:9612955-9613170 + GCAG-CGTCAGCAGCA------ACA------GCAACCA----------------------CTTGGAGCA---GC---------------A--------------------------------AACGACAGAAA--TG---------ATC------TTAAAT---GAATG---------------------------------CGGAAGTTTTTCTTGGGGTTT------------------------------------------------------------------------CG-------------------------------------------TAACCA---GCT---ACA------------------GC---------------------AGCAGCAGCA---AC------------------------TACAGC---------AACTGCCGCAGCAG------CAGCAGC---AACACCAAAG-------------------------------AGGTCGCAATTCCAGTG------------------GCAGCAATGTTGCTACATTTAT-----GTACATGT----GTT---TGTCG----G-------------------------------------------------------------------------------------------------CCA------------------------GTCGATG
droSim2 3r:11565617-11565849 - GCAG-CAGCAGCAGCA------GCG------TCAGCAGCA--CAGCAGCAACAGCAACCACTT------------------------------------------GGAGCAGCA--------AACGACAGAAA--TG---------ATC------TTAAAT---GAATG---------------------------------CGGAAGTTTTTCTTGGGGTTT------------------------------------------------------------------------CG-------------------------------------------TAACCA---GCT---ACA------------------GC---------------------AGCAGCAACTGCAGC---------------------------AAC------------TGCCGCAGCAG------CAGCAGC---AACACCAAAG-------------------------------AGGTCGCAATTCCAGTG------------------GCAGCAATGTTGCTACATTTAT-----GTACATGT----GTT---TGTCG----G-------------------------------------------------------------------------------------------------CCA------------------------GTCGATG
droSec2 scaffold_1:5250053-5250292 + GCAA-CACGAGAAGAA------GCA------GAAGCGGCGC-AAG---------------CAAC-A------GA------AGCAGCAGCAA------C---AACAACACCAACA--------A----CGAGTATCAGCTAGTCC-----------------------------AACGAATCCGATGCC------T---GCAACACC---------------------------------------------CAC------------------------------------AGCA------ACACCAGCAGCAACAGCA----------------------------------ACC---GTTGC------------------------------------------------------------------------------AGC---------CACATCCCCGGCA---------ACAGCAACACGATC----------------GA-CAACAGCAG---CATTGAGCAGCAAGCGC-AAGGGCCGG----C---------------GAAGAAAGGCCAAGGTCAG--------GCCA---AAG----------------------------------------------------------------------------------------------------------------------------GC---------GCAACA
droYak3 X:7826865-7827106 + GTGAACAGCGCTTTA----------------ACCAACACAG-TGG---------------CTGC-A------GC------AGCGGCCGCAGCAGCTGCCGCGGTGGC-----------C------A----------------GCAA---CACGTTG----CAGCAGCATCAGCAGCA------CCACCAACAGCA---------------------GCAGCAGCAGCAACAGCAACAGCAGC----------------------------------------------------------------------------------------------------------AAC---AAC------------------------------------------AGCAGCAGCAGCAAC---------AACAGC---------A---GC---------AGCAG---------------CAGCAGC---AA-----------------------------CAT---T-CACCGCAGCAGCATT-TAATCAGAG----C------------GATACCT--GTATCAAGGTGAG--------TCAC---T-G----------------------------------------------------------------------------------------------------------------------------CCACTGC----CACTTG
droEre2 scaffold_4770:1183984-1184208 - GCAG-CAGCAACAGCA------GCA------GCAACGCTAC-CAG---------------CA-------------------GCAGCTGCGA------C---AACAGCACCAGCA--------AA-T----------------GT-----------------CGCAGATGTCGCAGCAGGCCCATTATC------C---------------------------------------------------------G------------------------------------------------------------CAGCAACAGTCTAGTCTGGTCCGCCAG----CAGCAGCA---GC------------------------------------------ACCAGCAGCA---GC------------------------AACAGC---------AGCAGCAGCAGCAA---------CAGCAGCACCAGCAACGT------------GCCAGCAGCAA---C-C------------AA--AG------------------CCAACGCCAAAGCCAAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAGCCAGAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GCAA-CAGCAACAGCTAAGTAAACA------GCAATCA----------------------CATT-A------AC------AGCAGCGGCAA------C---AACAACAACAACA--------A----CTCAAA--TG---------CT--------------------------------------------------------------------------------------------------------A-------CACTTGAAAATGCAAAATCTGCTGATCATCATATTCATCA---------------------------------------T----CATCAGCT---AC------------------------------------------AGCAGCAGCA---GC------------------------AACAGC---------AGCAGCAACAACA---------ACAACAACGCCATC----------------GA-CAACAACAG---T-TCGAGCTGCCACTTT-GAGGCGCAT----C---------------GTTGCCAAATCGATGTGAG--------TCAA---GAG----------------------------------------------------------------------------------------------------------------------------CCACGGCCTGGCTATCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---GC------------------------AACAGC---------AGCAGC..............................................................................................................................................................................................................................................................................................20200.102200000
..................................................................................CAGCGGCAA------C---AACAACAACAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000011
........................................................................AC------AGCAGCGGCAA------C---AACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18190.051000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGC---------AGCAGCAACAACA---------..............................................................................................................................................................................................................................................................................18200.051100000
...................................................................................AGCGGCAA------C---AACAACAACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................A---GC------------------------AACAGC---------AGCAGCAACA..........................................................................................................................................................................................................................................................................................19200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---GC------------------------AACAGC---------AGCAGCAACAAC........................................................................................................................................................................................................................................................................................29200.051000010
................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---GC------------------------AACAGC---------AGCAGCAAC...........................................................................................................................................................................................................................................................................................26200.051000010
droVir3
GCAA-CAGCTACGCAA------ACA------ACAATCACAT-CAA---------------CAAC-A------AC---------------------------AACAA---------------------CTCAGA--TG---------CTC---------------------------------------------------------------------------------------------------------------CACTTGACAATGCAAAATCTGCTTATCATCATTTTCATCA---------------------------------------T----CATCAGCC---GG------------------------------------------AGCAGCAGCA---GC------------------------AGCAGC---------AGCAGCAGCAGCAGCAGCCGGAGCAGC---AA-----------------------------CAT---T-TCGAGCTGCCACTAT-GAGGCACAT----C---------------GTTGCGAAATCGATGTGCT--------TCAA---GTG----------------------------------------------------------------------------------------------------------------------------CCTCAGCCTGGCTATCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---------AGCAGCAGCAGCAGCA....................................................................................................................................................................................................................................................................................20200.102000000000000000000000000000000020000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------AGCAGCAGCAGCAGCAGCC.................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCCGG...............................................................................................................................................................................................................................................................................21200.051000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA---GC------------------------AGCAGC---------AGCAGCA.............................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---------AGCAGCAGCAGCAGCAGCC.................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------AGCAGC---------AGCAGCAGCAGCAGC.....................................................................................................................................................................................................................................................................................22200.051000000000000000000000010000000000000000000000000000000000000000
droGri2
ACAA-CAGCTAAGTAA------ACA------GCAACGGCAA-TCA---------------CAAC-A------AC------------AACGA------C---GACTACAAA-----------------------------------------------------------------CA-----------------------------------------------------------------------------------CACTTGACAATGCAAAAACTGCATATCATCATTTTCATCA---------------TCATCA-------------------TAGTCA---TCG---TCA------------------GC---------------------AGCAGCAGCA---------------------------------GC---------AGCAGCAGCAGCATTAGTAACAGCAGT---AATTC--------------------------------T-TCAAACTGCCACTTT-GAGGCACAT----C---------------GTTGCCAAATCGATGTGAT--------TCAA---GAA----------------------------------------------------------------------------------------------------------------------------TCCCCACCTAGCCATCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------------------------GC---------AGCAGCAGCAGCATT.....................................................................................................................................................................................................................................................................................19200.05110
droWil2
GCAA-CAACAACAGCA------GCA------ACAAATGCAA-CTG---------------CAAC-A------AC------AACAGCAGCAACAAGTGCAACA---------GCA---AC------A----------------GCAGCAACA-AATG----CAACTGCAACAACAA---------------------------CAGCAGCAACAATTGCAGCATCAGCAACAGCAACAGCAGC----------------------------------------------------------------------------------------------------------------------AACAAATGCAACAGCAAC---------------------AGCAACAGCA---------------------------------GC---------AACAATTGCAGCAACAGCAACAGCAG-----------------------------------CAACAAA-TGCAACTGCAACAACAACA------------------GCAGCCACAATGCCA---------GCA--------ACAG---CAG----------------------------------------------------------------------------------------------------------------------------CTGCAGCTCGAATACCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................AACAAGTGCAACA---------GCA---AC------A----------------GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.40202000
.........................................................................................AACAAGTGCAACA---------GCA---AC------A----------------GCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.33101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA------------------GCAGCCACAATGCCA---------G.................................................................................................................................................................2330.33101000
...........................................TG---------------CAAC-A------AC------AACAGCAGCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.25101000
.......................................................................................................................................................................................................................TGCAGCATCAGCAACAGCAACAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.25100010
.......................................................................................................................................................................................................................TGCAGCATCAGCAACAGCAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.25101000
...............................................................................................TGCAACA---------GCA---AC------A----------------GCAGCAACA-AATG----.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2650.20101000
..AA-CAACAACAGCA------GCA------ACAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23170.18302010
........................A------ACAAATGCAA-CTG---------------CAAC-A------AC------A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.15303000
...................................................................................................................................................AACA-AATG----CAACTGCAACAACAA---------------------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.15303000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAA-TGCAACTGCAACAACAAC.............................................................................................................................................................................................................24200.15303000
........................A------ACAAATGCAA-CTG---------------CAAC-A------AC------AAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.15303000
...................................................................................................................................................AACA-AATG----CAACTGCAACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.15303000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAA-TGCAACTGCAACAACA...............................................................................................................................................................................................................22200.15303000
...........................................................................................................................................................................ACAA---------------------------CAGCAGCAACAATTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.13101000
.................................................................................ACAGCAGCAACAAGTGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1880.13100010
..AA-CAACAACAGCA------GCA------ACAAATGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24170.12202000
........................................................................................................................................................................................................................................................................................................................................................................AACAAATGCAACAGCAAC---------------------AGC.......................................................................................................................................................................................................................................................................................................................................................2190.11101000
....................................................................................................................................................................TGCAACAACAA---------------------------CAGCAGCAACAATTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2890.11100010
....................................TGCAA-CTG---------------CAAC-A------AC------AACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.10202000
..........................................................................................................................................................TG----CAACTGCAACAACAA---------------------------CAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10202000
..............................................................................................................................................................................................................................TCAGCAACAGCAACAGCAGC----------------------------------------------------------------------------------------------------------------------AACA.............................................................................................................................................................................................................................................................................................................................................................................................24100.10100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACTGCAACAACAACA------------------GC........................................................................................................................................................................................21200.10202000
....................................TGCAA-CTG---------------CAAC-A------AC------AACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10202000
..........................................................................................................................................................TG----CAACTGCAACAACAA---------------------------CAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.10202000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACTGCAACAACAACA------------------GCA.......................................................................................................................................................................................22200.10202000
......AACAACAGCA------GCA------ACAAATGCAA-CT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25110.09101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACA------------------GCAGCCACAATG..............................................................................................................................................................................23140.07101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAG-----------------------------------CAACAAA-TGCAACTGC......................................................................................................................................................................................................................27150.07101000
.....................................................................................................A---------GCA---AC------A----------------GCAGCAACA-AATG----CAACTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27150.07101000
....................................................................................................................................................................................................................................................................................................................................................................................AGCAAC---------------------AGCAACAGCA---------------------------------GC---------AACAATT.............................................................................................................................................................................................................................................................................................25160.06100010
......AACAACAGCA------GCA------ACAAATGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22160.06101000
..........................................................................................................................................................................AACAA---------------------------CAGCAGCAACAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.06101000
......AACAACAGCA------GCA------ACAAATGCAA-C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.06101000
..........................................................................................................................................................................................................................AGCATCAGCAACAGCAACAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23170.06101000
..............................................................................................................................................................................................................................................................................................................................................................................TGCAACAGCAAC---------------------AGCAACAGCA---------------------------------GC---------....................................................................................................................................................................................................................................................................................................24170.06101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------ACAG---CAG----------------------------------------------------------------------------------------------------------------------------CTGCAGCTCGAATACCG26170.06101000
....................................TGCAA-CTG---------------CAAC-A------AC------AACAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25180.06101000
....................................TGCAA-CTG---------------CAAC-A------AC------AACAGCAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26180.06101000
..........................................................................................................................................................TG----CAACTGCAACAACAA---------------------------CAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25180.06101000
..........................................................................................................................................................TG----CAACTGCAACAACAA---------------------------CAGCAGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26180.06101000
.............................................................................................................................................................................................................................ATCAGCAACAGCAACAGCAGC----------------------------------------------------------------------------------------------------------------------AAC..............................................................................................................................................................................................................................................................................................................................................................................................24190.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAA-TGCAACTGCAACAACAACA------------------GC........................................................................................................................................................................................27200.05101000
............................................................................................................................................................................................................................CATCAGCAACAGCAACAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACTGCAACAACAACA------------------GCAGC.....................................................................................................................................................................................24200.05101000
....................................................................................................................................................ACA-AATG----CAACTGCAACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
...................................................................................................................................................AACA-AATG----CAACTGCAACAACAA---------------------------CA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCA---------------------------------GC---------AACAATTG............................................................................................................................................................................................................................................................................................20200.05101000
........................A------ACAAATGCAA-CTG---------------CAAC-A------AC------AACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
....................................TGCAA-CTG---------------CAAC-A------AC------AACAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
........................A------ACAAATGCAA-CTG---------------CAAC-A------AC------AACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
...................................................................................................................................................................................................................................AACAGCAACAGCAGC----------------------------------------------------------------------------------------------------------------------AAC..............................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
................................CAAATGCAA-CTG---------------CAAC-A------AC------AACAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05101000
..........................................................................................................................................................TG----CAACTGCAACAACAA---------------------------CAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
..............................................................................................................................................................................................................................................................................................................................................................................TGCAACAGCAAC---------------------AGCAACAGC.................................................................................................................................................................................................................................................................................................................................................21200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAG-----------------------------------CAAC...................................................................................................................................................................................................................................19200.05100010
...................................................................................................................................................AACA-AATG----CAACTGCAACAACAA---------------------------CAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAA-TGCAACTGCAACAACA...............................................................................................................................................................................................................21200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAA-TGCAACTGCAACAACAA..............................................................................................................................................................................................................23200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................AACAGCAAC---------------------AGCAACAGCA---------------------------------GC---------A...................................................................................................................................................................................................................................................................................................22200.05100010
..................................................................................................AACA---------GCA---AC------A----------------GCAGCAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACA------------------GCAGCCACA.................................................................................................................................................................................18200.05100010
.............................................................................................................................................................................................................................ATCAGCAACAGCAACAGCAGC----------------------------------------------------------------------------------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA-TGCAACTGCAACAACAACA------------------GCAGC.....................................................................................................................................................................................28200.05101000
..................................................................................................................................................................................................................................................................................................................................................................................ACAGCAAC---------------------AGCAACAGCA---------------------------------GC---------A...................................................................................................................................................................................................................................................................................................21200.05100010
.....................................................................................................................................................CA-AATG----CAACTGCAACAACAA---------------------------CAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05101000
...............................ACAAATGCAA-CTG---------------CAAC-A------AC------A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAA-TGCAACTGCAACAACAACA------------------..........................................................................................................................................................................................25200.05101000
dp5
CCAG-CAGCAGCGGCA------CTG------GCAGCAGCAG-CAG---------------CAGC-A------GC------AGCAGCGGCAG------C---AGCAGCA-----------GCA--------------------G--------------------------CAGCGGCA------------------------------------------------------------------CTGCCAGCAG---------------------------------------------------------CAGGAGCA----------------------------------GCC---GCCGC---------------TGCAGCAGGAGCGAC------AG---CAGCA---GCAGGAGCGACAGCAGCAGCAGGAGCGACAGC---------AGCAGCAGGAGCGA------CAGCAG-----------------------------------CAG---C-AGGAGC------------------------------------GACAG-----------------------------------CAGCAGCAGGCGGCTTCAGCTGCGACGCAGGATTCTCAGTTTGATGAGAATCA--------------------------------------------GGCTGAACGGT---------------------TCCA---GGAGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTTCAGCTGCGACGCAGG..............................................................................................................2111.0010100000000
......AGCAGCGGCA------CTG------GCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------AGCAGCAGGAGCGA------CAGCAG-----------------------------------C......................................................................................................................................................................................................................................2460.1710000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGGAGCGACAGC---------AGC.................................................................................................................................................................................................................................................................................................2460.1710000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGCA---GCAGGAGCGACAGCAGC............................................................................................................................................................................................................................................................................................................................2460.1710000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG-----------------------------------CAG---C-AGGAGC------------------------------------GACAG-----------------------------------CAGC.........................................................................................................................................2460.1710000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGGAGCGACA...............................................................................................................................................................................................................................................................................................................1990.1110100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG-----------------------------------CAG---C-AGGAGC------------------------------------GACA.................................................................................................................................................................................1990.1110100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------AGCAGCAGGAGCGA------CA..............................................................................................................................................................................................................................................................................1990.1110100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGCA---GCAGGAGCGACA.................................................................................................................................................................................................................................................................................................................................1990.1110100000000
.........................................................................................AG------C---AGCAGCA-----------GCA--------------------G--------------------------CAGCGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010000000
..........................................CAG---------------CAGC-A------GC------AGCAGCGGCAG------C---AGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510100000000
...................................CAGCAG-CAG---------------CAGC-A------GC------AGCAGCGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510100000000
.................................................................................GCAGCGGCAG------C---AGCAGCA-----------GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
................................CAGCAGCAG-CAG---------------CAGC-A------GC------AGCAGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510100000000
droPer2
GCAG-CAGCAGCAGCA------GCA------GCAGCAGCAG-TAC---------------CAGC-A------GC------------AGCAG---GAGCAGGA---GCA---------GC------A----------------GCAGTACCA-GAAG----CAGCAGCAGCAGCAGCAGTACCAGAAGC------A---------------------GCAGCATCAGCAGCAGCAGCAGCAGTACC---------------------------------------AACAGCAGCA------GGAGCA---------------------------------G-------------------GA------------------------------------------GCAGCA---------------GCAGTGGG------AACAGC---------AGCAGCAACGGCA--------------------------G-------------------------------CGGCAGCAGTACCAGCA------------------GCAGCGGCAGTGCCAGCA-----------------GCAG---GAG----------------------------------------------------------------------------------------------------------------------------CAGCAGCC--GCTGCAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................GCA------GCAGCAGCAG-TAC---------------CAGC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.251001000
.............................................................................................................................................................................................................................ATCAGCAGCAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000
...G-CAGCAGCAGCA------GCA------GCAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
droAna3
CCAG-CAGCAGCAGCA------ACA------GCAACAGCAG-CAA---------------CAGC-A------AC---------------------------AGCAGCATCAGCAACAAT------T----------------GCA--------------------------ACAACAGA---------------------------------------------------------------GCTACCTGCGA------------------------------------------------------------CAGCAAC----------------------------------A---ACGGCAAT------------TGCAGTGGGAGC---------AGCAGCAGCA---GC------------------------AACAGC---------AACACCAACAGCAA------CAGCTTC---AACATCAACTA------------ACCAA---CAG---C-TCCAGCG----------------------------------------------------------------------------------------------------------------AGTTTGATGAGTTCCACTGGCCCAGCAAGCAGACTGGCGGCGAAA-----------CC------------------------------CTGGGCGGAAAGATCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................ATCAGCAACAAT------T----------------GCA--------------------------ACAACAGA---------------------------------------------------------------GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.................................................................A------AC---------------------------AGCAGCATCAGCAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501010000
.................................................................................................................................................................................................................................................................................................................................................................................................GGAGC---------AGCAGCAGCA---GC------------------------AAC................................................................................................................................................................................................................................................................................................................20100.101010000
................................................................................................................................................................................................................................................................................................................................................................................................GGGAGC---------AGCAGCAGCA---GC------------------------A..................................................................................................................................................................................................................................................................................................................19110.091010000
..........................................CAA---------------CAGC-A------AC---------------------------AGCAGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18120.081000001
..................................................................................................................................................................................................................................................................................................................................................................................................GAGC---------AGCAGCAGCA---GC------------------------AAC................................................................................................................................................................................................................................................................................................................19170.061010000
.....................................GCAG-CAA---------------CAGC-A------AC---------------------------AGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
.....................................GCAG-CAA---------------CAGC-A------AC---------------------------AGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
..AG-CAGCAGCAGCA------ACA------GCAACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000001
................................CAACAGCAG-CAA---------------CAGC-A------AC---------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
...................................................................................................................................................................................................................................................................................................................................................................................................AGC---------AGCAGCAGCA---GC------------------------AACAGC---------AAC.................................................................................................................................................................................................................................................................................................24200.051100000
droBip1
GCAG-CAGCAGCAGTCTCTCCAGCA------GCAGTCG----------------------CTTC-AGCAGCAGCAGCAGCACAACCAGCAA------C---T---------GCA-----GCA--------------------C--------------------------CAGCAGCA------CAGCCAACAGCTGCAGCCACACCAGCAGCAGG---------------------------GCC---------------------------------------AGCATCAGCT------CCAGCA---------------------------------G----CAGCAGC---CCC---AGCACATCCACC------------------------------------------------------------------AGCTGC---------AGCAGCAGCAGCAGCAG---CAACAG-----------------------------------------------------------------------------------------------------------------------------CAGCAGCAAGTGGC------------------------------------------------------------CAACAAGATGCTCATCATACCGAAGCCTATCG---AGTCGATGATGCCCAGT-CCGCCGGACAAGCASizeHit CountTotal NormTotal
No Reads
droKik1
GCAA-CACCAGCAGCA------GCA------ACAACATCAA-CAG---------------CAGC-A------GC---------------AG------C---AACACCACCAGCAACA--ACA--------------------C--------------------------CAGCAACAAC---------------------------------------------------------------ACCACCAG------------------------------------------------------------CAGCAGCA----------------------------------TCA---GCAGCTTACGCAACAGCAAC---------------------TGCAGCAGCA------GCAACAACAGCAGCAACATCTCCAGCAGC---------AGCAGCAACATCTC-----------------------------------------CAG---CA------------------------------------------------------------------------------ACAG------CAACAGCAGGCCAC------------------------------------------------------------CAACAAAATGCTGATCATACCCAAGCCCATAG---A--------------------------GTCGASizeHit CountTotal NormTotal
No Reads
droFic1
ACAC-CAGCAGCAGCA------ACA------GCAACAACAG-CAA---------------CA-------------------GCAGCAGCAA------C---TACAGCAGCAACA------------------------------------------------------------ACAGA---------------------------------------------------------------GCTGCCTGCGA------------------------------------------------------------CAGCAGCA-------------------------------A------AGACAAT------------TGCAGTGGGAACAGCAACAGCAACATCAGCA---GC------------------------AACAGC---------AGCAGCAACATCAG------CAGCTGC---AACACCAACTG------------ACAAA---CAG---C-TCGAGCG----------------------------------------------------------------------------------------------------------------AATTTGATGAGTACCACTGGCCGAGCAAGCAGACGGGCGGCGAGA-----------GTCTGGG---------------------T--------GGTGGCAAAATSizeHit CountTotal NormTotal
No Reads
droEle1
GCAG-CAGCAACAGGT------TGCGTACAATCCACAACAA-CAA---------------CA-------------------GCAGCAGCAG------C---AGCAGCAACAACA------------------------------------------------------------ACACT---------------------------------------------------------------CCTCACTGCGACGCAGTTCACGTGGCAAGACGGGTTCT-----TGTGTGAGTTCGGCA---------------------------------------G----CAGCAGC----AC------------------------------------------AGCAGCAGCAGCAGC---------------------------AAC---------ACCACCAGCAG---------CAACAGCAACAT-AGCAACGCTGCTGCTGCTGTA-CAACAGCAA---T-T---GC-----------------------------------------TGCCACCGCCTG-----GTACCTAT----CAA---TACCAA------------------------------------------------------------CAGGTGGGCGGCAATA-----------CCGTTGT---------------------A--------GTTGCCGTGCGSizeHit CountTotal NormTotal
No Reads
droRho1
GCAA-CATCAGCAGCA------TTC------GCAACAGATATTAC---------------CAGC-T------GG---------CTTGGTAA--ATGGCAATG---GCA---------AC------G----------------GCAA---CACGATG----CAACAACAACAGCAGCG------CA---------------------------------------------------------CCAGTCAGCAGC------------------------------------ACAT------A----------------------TTTGTCTGCCCCACTAGCAACCA---GCA---ACTCCTGC---------------TGCAACATCAACAAC------AG---CAGCA---GCAGCAACAACAACAACAGCAACAAACCAA--------------------------------------------------------------------A---CAG---C-------------GCCAGGC--GCAAATAAAGTTGCCAATAAAGTCAACG--------GTG-GCA--------CCAG---GAG----------------------------------------------------------------------------------------------------------------------------TAACGGC--AGCAACTGSizeHit CountTotal NormTotal
No Reads
droBia1
GCAG-CAGCAGCAGCA------GCA------ATTTGCAGCC-AGG---------------CAGC-A------AC------AGCAGCAGCAC------C---ATCAGCAGCAGCA--------AT----------------------------------------------------------------------------------------------------------------------CCTACCAGGCGC------------------------------------AGAT------ACACCAGCAGCCGCAGCA----------------------------------ACA---TCCGCATC------------CGCATCCCCATCAGC------AG---CAGCA---GCAGCAGCACCAGCAGCAACATCAGACGATGC---------AGCAGCAGCATG-----------------------------------------GCCAG---CAG-------------G-------------CGG-----------------------GGCAGATGGGTGGCTA--------CCAG---AAG----------------------------------------------------------------------------------------------------------------------------CCGCCACCTTTGACCCGSizeHit CountTotal NormTotal
No Reads
droTak1
GCAA-CAGCAACAACA------GCA------GCAACCA----------------------CTTGGAGCA---GC---------------A--------------------------------AACGACAGAAA--TG---------ATC------TTAAAT---GAATG---------------------------------CGGAAGTTTTTCTTGGGGTTT------------------------------------------------------------------------CG-------------------------------------------TAACCA---GCT---ACA------------------GC---------------------AGCAGCAACAGCAAC---------------------------AGC---------AGCAACTGCAG---------CAGCAGC---AACACCAAAG-------------------------------AGGTCGCAATTCCAGTG------------------GCAGCTATGTTGCTACATTTAT-----GTACATGT----GTT---TGTCG----G-------------------------------------------------------------------------------------------------CCA------------------------GTCGATGSizeHit CountTotal NormTotal
No Reads
droEug1
GCAC-CAGCAGCAGCA------GCA------GCAACAGCAA-CAG---------------CAGC-A------GC---------------AA---CAAC---AGCAGCAGCAGCA-----AGA--------------------CC-----------------AGCGAACCACTTTGC------------------------------------------------------------------------------------------------------------ATCCTCAAAT------TCACCA---------------------------------T----CATCATC---AAC---AGCAAATGCAAC---------------------------------------------------------------------AGCAGCAGCAGCAGCAGCAGCAG---------CAACAAC---AATCC----------------------------------------------------------------------------------------------------------TCGAGAG---CGGCG----G-------------------------------------------------------------------------------------------------CCAGTCCATTATCACCACTACGTCCTGGAAATCCSizeHit CountTotal NormTotal
No Reads
dm3
GCAG-CGTCAGCAGCA------ACA------GCAACCA----------------------CTTGGAGCA---GC---------------A--------------------------------AACGACAGAAA--TG---------ATC------TTAAAT---GAATG---------------------------------CGGAAGTTTTTCTTGGGGTTT------------------------------------------------------------------------CG-------------------------------------------TAACCA---GCT---ACA------------------GC---------------------AGCAGCAGCA---AC------------------------TACAGC---------AACTGCCGCAGCAG------CAGCAGC---AACACCAAAG-------------------------------AGGTCGCAATTCCAGTG------------------GCAGCAATGTTGCTACATTTAT-----GTACATGT----GTT---TGTCG----G-------------------------------------------------------------------------------------------------CCA------------------------GTCGATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................C---------------A--------------------------------AACGACAGAAA--TG---------ATC------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTG------------------GCAGCAATGTTG..............................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................C---------------A--------------------------------AACGACAGAAA--TG---------ATC------TTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AG-CGTCAGCAGCA------ACA------GCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTGCTACATTTAT-----T..............................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC---AACACCAAAG-------------------------------AC...........................................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................T---ACA------------------GC---------------------AGCAGCAGCA---AC------------------------...................................................................................................................................................................................................................................................................................................................18130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................CT---ACA------------------GC---------------------AGCAGCAGCA---AC------------------------...................................................................................................................................................................................................................................................................................................................1970.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................CA------------------GC---------------------AGCAGCAGCA---AC------------------------TA.................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000
droSim2
GCAG-CAGCAGCAGCA------GCG------TCAGCAGCA--CAGCAGCAACAGCAACCACTT------------------------------------------GGAGCAGCA--------AACGACAGAAA--TG---------ATC------TTAAAT---GAATG---------------------------------CGGAAGTTTTTCTTGGGGTTT------------------------------------------------------------------------CG-------------------------------------------TAACCA---GCT---ACA------------------GC---------------------AGCAGCAACTGCAGC---------------------------AAC------------TGCCGCAGCAG------CAGCAGC---AACACCAAAG-------------------------------AGGTCGCAATTCCAGTG------------------GCAGCAATGTTGCTACATTTAT-----GTACATGT----GTT---TGTCG----G-------------------------------------------------------------------------------------------------CCA------------------------GTCGATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...G-CAGCAGCAGCA------GCG------TCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2021.00200002000000000000
droSec2
GCAA-CACGAGAAGAA------GCA------GAAGCGGCGC-AAG---------------CAAC-A------GA------AGCAGCAGCAA------C---AACAACACCAACA--------A----CGAGTATCAGCTAGTCC-----------------------------AACGAATCCGATGCC------T---GCAACACC---------------------------------------------CAC------------------------------------AGCA------ACACCAGCAGCAACAGCA----------------------------------ACC---GTTGC------------------------------------------------------------------------------AGC---------CACATCCCCGGCA---------ACAGCAACACGATC----------------GA-CAACAGCAG---CATTGAGCAGCAAGCGC-AAGGGCCGG----C---------------GAAGAAAGGCCAAGGTCAG--------GCCA---AAG----------------------------------------------------------------------------------------------------------------------------GC---------GCAACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GTGAACAGCGCTTTA----------------ACCAACACAG-TGG---------------CTGC-A------GC------AGCGGCCGCAGCAGCTGCCGCGGTGGC-----------C------A----------------GCAA---CACGTTG----CAGCAGCATCAGCAGCA------CCACCAACAGCA---------------------GCAGCAGCAGCAACAGCAACAGCAGC----------------------------------------------------------------------------------------------------------AAC---AAC------------------------------------------AGCAGCAGCAGCAAC---------AACAGC---------A---GC---------AGCAG---------------CAGCAGC---AA-----------------------------CAT---T-CACCGCAGCAGCATT-TAATCAGAG----C------------GATACCT--GTATCAAGGTGAG--------TCAC---T-G----------------------------------------------------------------------------------------------------------------------------CCACTGC----CACTTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................GCAGCATCAGCAGCA------CCACCAACAGCA---------------------GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000000000
.......................................................................................GCAGCAGCTGCCGCGGTGGC-----------C------A----------------GCAA---C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...............................................................................................................................................CAA---CACGTTG----CAGCAGCATCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------------CAGCAGC---AA-----------------------------CAT---T-CACCGCAGC......................................................................................................................................................................................................................2411.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---------------CAGCAGC---AA-----------------------------CAT---T-CACCGCAGC......................................................................................................................................................................................................................2611.00101000000000
..........................................................................................................................................................................................................................AGCAGCAGCAACAGCAACAGCAGC----------------------------------------------------------------------------------------------------------AAC---.......................................................................................................................................................................................................................................................................................................................................................................................................27200.5010000000000010
..............................................................GC-A------GC------AGCGGCCGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.25101000000000
..........................................................................................................................................................................AGCAGCA------CCACCAACAGCA---------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.17100010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAC---------AACAGC---------A---GC---------AGCAG---------------C...............................................................................................................................................................................................................................................................................23200.15303000000000
............................................................................................................................................................................................................................................AGCAGC----------------------------------------------------------------------------------------------------------AAC---AAC------------------------------------------AGCAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................24200.15303000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAAC---------AACAGC---------A---GC---------AGCAG---------------C...............................................................................................................................................................................................................................................................................24200.15303000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAC---------AACAGC---------A---GC---------AGC.................................................................................................................................................................................................................................................................................................20200.15303000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGC---------A---GC---------AGCAG---------------CAGCAGC---......................................................................................................................................................................................................................................................................20200.10202000000000
..................................................................................................................................................................................................A---------------------GCAGCAGCAGCAACAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.10202000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------AACAGC---------A---GC---------AGCAG---------------CAGCAGC---AA-----------------------------CA.....................................................................................................................................................................................................................................28110.09101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................AC---------AACAGC---------A---GC---------AGCAG---------------CAGCAGC---AA-----------------------------C......................................................................................................................................................................................................................................26130.08101000000000
...........................................................................................................................................................................................................................................CAGCAGC----------------------------------------------------------------------------------------------------------AAC---AAC------------------------------------------AGCAGCA...................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---------A---GC---------AGCAG---------------CAGCAGC---AA-----------------------------C......................................................................................................................................................................................................................................22200.05101000000000
............................................................................................................................................................................................AACAGCA---------------------GCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010000000
................................................................................................................................................................................................................................AGCAACAGCAACAGCAGC----------------------------------------------------------------------------------------------------------AA...........................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000100000
.........................................................................................................................................................................................ACCAACAGCA---------------------GCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAAC---------AACAGC---------A---G..............................................................................................................................................................................................................................................................................................................20200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAC---------AACAGC---------A---GC---------AGCAG---------------CAGC............................................................................................................................................................................................................................................................................26200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................C---------AACAGC---------A---GC---------AGCAG---------------CAGCA...........................................................................................................................................................................................................................................................................20200.05100000100000
.........................................................................................................................................................................................................................................AACAGCAGC----------------------------------------------------------------------------------------------------------AAC---AAC------------------------------------------AGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAAC---------AACAGC---------A---GC---------....................................................................................................................................................................................................................................................................................................23200.05100100000000
........................................................................................................................................................................................................................................CAACAGCAGC----------------------------------------------------------------------------------------------------------AAC---AAC------------------------------------------AGCAGCA...................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
.............................................................................................................................................................................................ACAGCA---------------------GCAGCAGCAGCAACAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100100000000
................................................................................................................................................................................................................................................GC----------------------------------------------------------------------------------------------------------AAC---AAC------------------------------------------AGCAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................20200.05100100000000
..............................................................................................................................................................................................................................GCAGCAACAGCAACAGCAGC----------------------------------------------------------------------------------------------------------AAC---A......................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................AC---AAC------------------------------------------AGCAGCAGCAGCAAC---------..................................................................................................................................................................................................................................................................................................................................20200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................AC---AAC------------------------------------------AGCAGCAGCAGCAAC---------AAC...............................................................................................................................................................................................................................................................................................................................23200.05100100000000
droEre2
GCAG-CAGCAACAGCA------GCA------GCAACGCTAC-CAG---------------CA-------------------GCAGCTGCGA------C---AACAGCACCAGCA--------AA-T----------------GT-----------------CGCAGATGTCGCAGCAGGCCCATTATC------C---------------------------------------------------------G------------------------------------------------------------CAGCAACAGTCTAGTCTGGTCCGCCAG----CAGCAGCA---GC------------------------------------------ACCAGCAGCA---GC------------------------AACAGC---------AGCAGCAGCAGCAA---------CAGCAGCACCAGCAACGT------------GCCAGCAGCAA---C-C------------AA--AG------------------CCAACGCCAAAGCCAAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAGCCAGAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................CTAC-CAG---------------CA-------------------GCAGCTGCGA------C---AACAGCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28113.001300000013
.....................................................................................................AACAGCACCAGCA--------AA-T----------------GT-----------------CGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.........................................................................................................GCACCAGCA--------AA-T----------------GT-----------------CGCAGATGTCGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
......................................................................................TGCGA------C---AACAGCACCAGCA--------AA-T----------------G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
..............................................................................................................................................GT-----------------CGCAGATGTCGCAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
.................................................................................................C---AACAGCACCAGCA--------AA-T----------------GT-----------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA---------CAGCAGCACCAGCAACGT------------GCCAGC.........................................................................................................................................................................................................................................2911.0011000000
.................................................................................................C---AACAGCACCAGCA--------AA-T----------------GT-----------------CGCAGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
..............................................................................................................................................................................................................................................................................................................................ACAGTCTAGTCTGGTCCGCCAG----CAGC.............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAAGCCAAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAGCCAGA.2511.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAA---------CAGCAGCAC....................................................................................................................................................................................................................................................................19190.0511000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---GC------------------------AACAGC---------AGCAGC..............................................................................................................................................................................................................................................................................................18200.0511000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CA---GC------------------------AACAGC---------AGCAGCAGCAGCA.......................................................................................................................................................................................................................................................................................23200.0510000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGC---------AGCAGCAGCAGCAA---------C............................................................................................................................................................................................................................................................................20200.0511000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GC------------------------AACAGC---------AGCAGCAGCAG.........................................................................................................................................................................................................................................................................................19200.0511000000
..AG-CAGCAACAGCA------GCA------GC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0511000000
..........................................................................................................................................................................................................................................................................................................................................................GCAGCA---GC------------------------------------------ACCAGCAGCA---.............................................................................................................................................................................................................................................................................................................................................18200.0510100000

Generated: 05/18/2015 at 02:49 AM