dmo_2527

Name	Class	Family	Strand
TART_DV	LINE	Jockey	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GGGCGGGGGCGTGAGGCGAGCATAAAACCAAGTGACGGACTTACGGCCAACAGCAGCAGCGGCAGCAGCAACAATAACAGCAGCAGCAGCAATAACAACAACAGCAGCAACAACAACAACAGCAACTGGCCCGTTTGGAGCAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGAACGACCGACGACGAACGACGAAGCGGCGAAAACAACAACGAACGTGT ****************************************************....((.((.((.((..........)).)).)).))...............************************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M060 embryo	M046 female body
...........................................................................................................................................................................................CTTGATTTCAACAGCGAACGACCGAC......................................	26	1	1	1.00	1	1	0
....................................................................................................................................GTTTGGAGCCGCGGGTATGCC..................................................................................................	21	3	4	0.25	1	0	1
.....................................................................................GCAGCAATAACAACAACAGC..................................................................................................................................................	20	0	6	0.17	1	0	1
...........................................................................................................CAACAACAACAACAGCAACTG...........................................................................................................................	21	0	20	0.10	2	0	2
.........................................................................................................................................................................................................CGAACGTGCGAAGACGAAC...............................	19	3	19	0.05	1	0	1
......................................................AGCAGCGGCAGCAGCAACA..................................................................................................................................................................................	19	0	20	0.05	1	1	0
.........................................................................................................AGCAACAACAACAACAGCAACT............................................................................................................................	22	0	20	0.05	1	0	1
..........................................................................................................GCAACAACAACAACAGCAACT............................................................................................................................	21	0	20	0.05	1	0	1
...............................................CAACAGCAGCAGCGGCAGCAG.......................................................................................................................................................................................	21	0	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6680:18263998-18264248 +	dmo_2527	G------------------GGC----GGGGGCGTGA--GGCGA-------GCAT----AAAACCAAGTGACGGACTTACGGCCAACAGCAGCAGCGGCAGC---AGCAACAATAACAGCAGCAGCAGCAATAACAACAACAGCAGCA---------A------CAA-CAACAACAGCAACTGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACCGACGACGA--A---C---------GACGAAGCGGCGAAAA--C---------------AAC-AAC------------------------------------GAACGTGT-------
droVir3	scaffold_13049:23653408-23653652 +		G------------------GGC----GGGGGCGTGC--GGCGA-------GCAC----AAAACCAAGTGACGAACTTACGGCCAACAGCAGCAGCGGCAGC---AGC------------AGCAGCAACAACAACAACAACAACAGCA---------ACAACAACAG-CAACAACAGCAACTGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACCGACGACGA--A---C---------GACGAAGCGGCGAAAA--C---------------AAC-AAC------------------------------------GAACGTGT-------
droGri2	scaffold_15110:14016450-14016697 -		G------------------GGC----GGGGGCGTGTTGGGCGA-------GCACAA--AAAACCAAGTGACGAACTTACGGCCAACAGCAGCAGCCGCAGCAACA------------------------------ACAACAACAACAACAGCAGTAG------CAA-CAACAACAGCAACTGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAACGACGA--A---C---------GACGAAGCGGCGAAAA--------------------A-CA-------------------ACAACAACA---ACAAACGACCGTGT-------
droWil2	scf2_1100000004511:1682472-1682732 +		GGCGATAGC-------GAGGGC----GGGGG--------GCGAGCGGTGAGCCA-----CAAGTAAGTGACGAACTTACGGC-AGCAGCGGCA----------------------------------------------------------------------------------GCAACTGGTCC----------GTATGGAGGGGGGAGCTGCTGCTGCTGGTGCTGTTGCTGTTGCTGCTGCTGTTGTTGGCGAGCAGAGTCAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGA-CGACGACGAGGAGA--GACGACGACGA--CGGCGACGA--C---------------GAC-GAC------------------------------------GA-------------
dp5	XR_group6:10418015-10418280 +		GG-----GA-------GGAG--GGGCGGAGGA------------------GCGA----AAAAGCAAGTGACGAACTTACGGCCAACAGCAGCAACAGCGGCAGCG---------------------------------------------------G------CAACCAGCAAC--CAACCGGCCCCGCTGCCGCTGCTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGCCGA--A---CGCCGACGACGACGAAGCGGCGACAA---------AA-------------CGAGCGAGCAGCAACAGCAGCAGCAGCAACAACA--GGAACGTGTGTTGGTG
droPer2	scaffold_20:369953-370216 +		GG-----GA-------GGAG--GGGCGGAGGA------------------GCGA----AAAAGCAAGTGACGAACTTACGGCCAACAGCAGCAACAGCGGCAGCG---------------------------------------------------G------CAACCAGCAAC--CAACCGGCCCCGCTGCCGCTGCTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGAAACGACGAGCGCCGA--A---CGCCGACGACGACGAAGCGGCGACAA---------AA-------------CGAGCGAGCAGCAACAGCAGCAGCAGCA---ACA--GGAACGTGTGTTGGTG
droAna3	scaffold_13337:5573425-5573650 -		GA-----GT-------GGTGGC----GGGGGA------------------GCA------GAAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACAACAACA------------------------------ACAACAACAACA---------A------CAA-TAATAACAACAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGA--A---CG--AGCGTCGACGAAGTGGCGACAA----AAAAAAA-AAAA----GCCA----------------------------------------------------
droBip1	scf7180000396371:894965-895188 -		TA-----GT-------GGTAGC----GGGGGA------------------GCA------GAAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACAACAACA------------------------------ACAACAAGAACA---------A------CAA-CAACAGAAGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGA--A---CG--AGCGTCGACGAAGTGGCGACAA---------AAAAAAAACA-C-CA----------------------------------------------------
droKik1	scf7180000302391:1563898-1564114 +		C---------------GGGAGC----GGGGGA------------------GCAAAAGCAAAAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACAACACCA---------------------------------------------------A------TAA-CAGCAACAGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGA--A---CG--AACGTCGACGAAGTGGCGACAAAACCAACAAAA-AAAA------------------------------------------------------------
droFic1	scf7180000454113:3423795-3423996 +		G------------------GGC----GGGGGA------------------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAGCAGGAACA---------------------------------------------------A------CAA-CAACAACGGCAACCGGCCC----------GTTTGGAA------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGA--A---CG--AGCGTCGACGAAGTGGCGACAA---------AA-AAAA----G-C-----------------------------------------------------
droEle1	scf7180000490564:2212837-2213041 -		G------------------GGC----GGGGGA------------------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAGCAGC---A---------------------------------------------------A------CAA-CAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGA--A---CG--AGCGTCGACGAAGTGGCGACAA--------AAA-AAAA----G-CTCGAG------------------------------------------------
droRho1	scf7180000780024:73799-74020 +		GT-----GCGGACCAAGGGGGC----GGGGGA------------------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAGCAGC---A---------------------------------------------------A------CAA-CAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGA--A---CG--AGCGTCGACGAAGTGGCGACAA---------AA-AAAA----G-CTCGAG------------------------------------CGAGT-------
droBia1	scf7180000302193:309233-309442 +		C------------------GGC----GCGGGAGCGA--GGGGC------AGCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCA------------------------------------------------------------A------CAA-CAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGA--A---CG--AGCGCCGACGAAGTGGCGACAA-------------AAA----G-CACGAG------------------------------------CGAGC-------
droTak1	scf7180000415681:177957-178165 -		A------------------GGC----GGGGCTGCGG--GGGTA-------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCA------------------------------------------------------------A------CAA-CAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGA--A---CG--AGCGTCGACGAAGTGGCGACAG-------AAAA-AAAA----G-CACGAG------------------------------------------------
droEug1	scf7180000409711:3168985-3169200 -		GGC--CAGA-------GAAGGC----GGGGGA------------------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAAAAGCAACA---------------------------------------------------A------CAA-CAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGA--A---CG--AGCGTCGACGAAGTGGCGACAA---------AA-AAAA----G-CACGAG------------------------------------------------
dm3	chr3L:11288834-11289037 -		G------------------GGC----GGGGGA------------------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAAC------A---------------------------------------------------C------CAA-CAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGA--A---CG--AGCGTCGACGAAGTGGCGACAA--CCAAAAAAG-AAAA----G-CA----------------------------------------------------
droSim2	3l:11021642-11021845 -		G------------------GGC----GGGGGA------------------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAAC------A---------------------------------------------------C------CAA-CAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGA--A---CG--AGCGTCGACGAAGTGGCGACAA--CCAAAAAAG-AAAA----G-CA----------------------------------------------------
droSec2	scaffold_0:3501882-3502085 -		G------------------GGC----GGGGGA------------------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAAC------A---------------------------------------------------C------CAA-CAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGA--A---CG--AGCGTCGACGAAGTGGCGACAA--CCAAAAAAG-AAAA----G-CA----------------------------------------------------
droYak3	3L:11323056-11323259 -		G------------------GGC----GGGGGA------------------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAGC------A---------------------------------------------------A------CAA-CAACAACGGCAACCGGCCT----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGA--A---CG--AGCGTCGACGAAGTGGCGACAA--CCAAAAAAG-AAAA----G-CA----------------------------------------------------
droEre2	scaffold_4784:11292092-11292292 -		G------------------GGC----GGGGGA------------------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCA------------------------------------------------------------A------CAA-CAACAACGGCAACCGGCCT----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGA--A---CG--AGCGTCGACGAAGTGGCGACAA--CCAAAAAAG-AAAA----G-CA----------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

G------------------GGC----GGGGGCGTGA--GGCGA-------GCAT----AAAACCAAGTGACGGACTTACGGCCAACAGCAGCAGCGGCAGC---AGCAACAATAACAGCAGCAGCAGCAATAACAACAACAGCAGCA---------A------CAA-CAACAACAGCAACTGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACCGACGACGA--A---C---------GACGAAGCGGCGAAAA--C---------------AAC-AAC------------------------------------GAACGTGT-------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................GCAGCAATAACAACAACAGC....................................................................................................................................................................................................................................................................................................................	20	6	0.17	1	1	0	0	0	0	0
.................................................................................................................................................CA---------A------CAA-CAACAACAGCAACTG.............................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
.........................................................................................AGCAGCGGCAGC---AGCAACA....................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
...............................................................................................................................................AGCA---------A------CAA-CAACAACAGCAACT..............................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................GCA---------A------CAA-CAACAACAGCAACT..............................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..................................................................................CAACAGCAGCAGCGGCAGC---AG.........................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0

droVir3

G------------------GGC----GGGGGCGTGC--GGCGA-------GCAC----AAAACCAAGTGACGAACTTACGGCCAACAGCAGCAGCGGCAGC---AGC------------AGCAGCAACAACAACAACAACAACAGCA---------ACAACAACAG-CAACAACAGCAACTGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACCGACGACGA--A---C---------GACGAAGCGGCGAAAA--C---------------AAC-AAC------------------------------------GAACGTGT-------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................................................................................................................................................................................................ACCGACGACGA--A---C---------GACGAAGC....................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................GACGA--A---C---------GACGAAGCGGC.................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................CAACAGCGA-ACGACCGACGAC..............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TTCAACAGCGA-ACGACCGACGA...............................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................GTTTAAATATGTGAAATTAGTACA...............................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ACAGCGA-ACGACCGACGA...............................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................AG-CAACAACAGCAACTGGCCC----------...............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................ACGACGA--A---C---------GACGAAGCGGCG................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CGACCGACGACGA--A---C---------GACGAA......................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................AGCGGCAGC---AGC------------AGCAGCAACAAC................................................................................................................................................................................................................................................................................................................................	24	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AACAGCAGCAGCGGCAGC---AGC------------AGCAG.......................................................................................................................................................................................................................................................................................................................................	26	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AACAGCA---------ACAACAACAG-CAACA.......................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCAGCAACAACAACAACAACAACAGC.................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AGC---AGC------------AGCAGCAACAAC................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................ACAACAACAACAACAGCA---------ACAACAAC...............................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GCAGCAGCGGCAGC---AGC------------AGCAGCAA....................................................................................................................................................................................................................................................................................................................................	25	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
................................................................................................................................AACAACAACAACAACAGC.................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AGC---AGC------------AGCAGCAACAACAACAACA.........................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................AACAACAACAGCA---------ACAACAACAG-CA..........................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................CAACAG-CAACAACAGCAAC...............................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................CAGC---AGC------------AGCAGCAACAACA...............................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................ACAACAACAGCA---------ACAACAAC...............................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................ACAACAACAG-CAACAACA....................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................GCGGCAGC---AGC------------AGCAGCAAC...................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................AACAACAACAACAGCA---------ACA....................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................AACAACAACAACAACAGCA---------ACAACAA................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................GCAGC---AGC------------AGCAGCAACAAC................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................ACAACAACAGCA---------ACAACAACAG-CAA.........................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AGCAGCGGCAGC---AGC------------AGCA........................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................GGCAGC---AGC------------AGCAGCAACA..................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACAGCA---------ACAACAACAG-CAA.........................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................AGC------------AGCAGCAACAACAACAAC..........................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................AACAACAACAGCA---------ACAACAAC...............................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................AACAACAG-CAACAACAGCAAC...............................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................AGCAGCAGCGGCAGC---AGC------------AGC.........................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AACAACAGCA---------ACAACAACAG-C...........................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................AGCA---------ACAACAACAG-CAACAACAGCAAC...............................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................AGCAACAACAACAACAACAACAGCA---------AC.....................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................GC------------AGCAGCAACAACAACAACAACAA.....................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................ACAACAACAACAACAGCA---------ACA....................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AGCAGCGGCAGC---AGC------------AGCAGCA.....................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................CAACAGCA---------ACAACAACAG-C...........................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................AACAACAACAGCA---------ACAACAACAG-CAAC........................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................CAGCAACAACAACAACAACAAC....................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................CAGCAGCAGCGGCAGC---AGC------------A...........................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................ACAACAACAACAGCA---------ACAAC..................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

G------------------GGC----GGGGGCGTGTTGGGCGA-------GCACAA--AAAACCAAGTGACGAACTTACGGCCAACAGCAGCAGCCGCAGCAACA------------------------------ACAACAACAACAACAGCAGTAG------CAA-CAACAACAGCAACTGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAACGACGA--A---C---------GACGAAGCGGCGAAAA--------------------A-CA-------------------ACAACAACA---ACAAACGACCGTGT-------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................................................................................................................................ACAACAGCAGTAG------CAA-CAACA.......................................................................................................................................................................................................................................................................................	21	8	0.13	1	1	0
.......................................................................................GCAGCAGCCGCAGCAACA------------------------------ACA.........................................................................................................................................................................................................................................................................................................................	21	12	0.08	1	1	0

droWil2

GGCGATAGC-------GAGGGC----GGGGG--------GCGAGCGGTGAGCCA-----CAAGTAAGTGACGAACTTACGGC-AGCAGCGGCA----------------------------------------------------------------------------------GCAACTGGTCC----------GTATGGAGGGGGGAGCTGCTGCTGCTGGTGCTGTTGCTGTTGCTGCTGCTGTTGTTGGCGAGCAGAGTCAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGA-CGACGACGAGGAGA--GACGACGACGA--CGGCGACGA--C---------------GAC-GAC------------------------------------GA-------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................................................................................................................................................GATTTCAACAGCGA-ACGAC.....................................................................................................................	19	1	2.00	2	2	0	0	0	0
......................................................................................................................................................................................................................................TGCTGTTGCTGCTGCTGTTG.........................................................................................................................................................................................................	20	20	1.40	28	0	28	0	0	0
...........................................................................................................................................................................................................................................................................................................................ATTTCAACAGCGA-ACGAC.....................................................................................................................	18	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................................................TGTTGCTGTTGCTGCTGCTGTTGTTG......................................................................................................................................................................................................	26	20	0.20	4	0	4	0	0	0
................................................................................................................................................................................................................................TGCTGTTGCTGTTGCTGCTGCTGTTG.........................................................................................................................................................................................................	26	20	0.20	4	0	4	0	0	0
.................................................................................................................................................................................................................................GCTGTTGCTGTTGCTGCTGCTGTTG.........................................................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0
....................................................................................................................................................................................................................................GTTGCTGTTGCTGCTGCTGTTGT........................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
....................................................................................................................................................................................................................TGCTGCTGCTGGTGCTGTT............................................................................................................................................................................................................................	19	18	0.06	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GACGACGACGA--CGGCGACGA--..........................................................................	20	20	0.05	1	0	0	1	0	0
................................................................................................................................................................................................................................TGCTGTTGCTGTTGCTGCTGC..............................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0

dp5

GG-----GA-------GGAG--GGGCGGAGGA------------------GCGA----AAAAGCAAGTGACGAACTTACGGCCAACAGCAGCAACAGCGGCAGCG---------------------------------------------------G------CAACCAGCAAC--CAACCGGCCCCGCTGCCGCTGCTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGCCGA--A---CGCCGACGACGACGAAGCGGCGACAA---------AA-------------CGAGCGAGCAGCAACAGCAGCAGCAGCAACAACA--GGAACGTGTGTTGGTG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................A-------------CGAGCGAGCAGCAACAGCAGCAGCA...........................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................GCGGCGACAA---------AA-------------CGAGCGAGC...........................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................CGACGACGACGAAGCGGCGACAA---------A..................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAGC.........................	20	20	0.50	10	0	10	0	0	0	0	0	0	0	0
...................................................................................AACAGCAGCAACAGCGGC..............................................................................................................................................................................................................................................................................................................................................................	18	9	0.11	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................GCAACAGCGGCAGCG---------------------------------------------------G------CA..............................................................................................................................................................................................................................................................................................	18	14	0.07	1	0	1	0	0	0	0	0	0	0	0

droPer2

GG-----GA-------GGAG--GGGCGGAGGA------------------GCGA----AAAAGCAAGTGACGAACTTACGGCCAACAGCAGCAACAGCGGCAGCG---------------------------------------------------G------CAACCAGCAAC--CAACCGGCCCCGCTGCCGCTGCTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGAAACGACGAGCGCCGA--A---CGCCGACGACGACGAAGCGGCGACAA---------AA-------------CGAGCGAGCAGCAACAGCAGCAGCAGCA---ACA--GGAACGTGTGTTGGTG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................A---ACA--GGAACGTGTGTTGGT.	19	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCA---ACA--................	19	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAGCA---A....................	20	20	0.05	1	0	0	1	0	0	0

droAna3

GA-----GT-------GGTGGC----GGGGGA------------------GCA------GAAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACAACAACA------------------------------ACAACAACAACA---------A------CAA-TAATAACAACAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGA--A---CG--AGCGTCGACGAAGTGGCGACAA----AAAAAAA-AAAA----GCCA----------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................................................................................................................................................................................................................CGA--A---CG--AGCGTCGACGAAGTG...................................................................................	21	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................CGACGAGCGACGA--A---CG--AGCG..............................................................................................	20	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................CAACAGCGA-ACGACGAGCGACGA--A---CG--..................................................................................................	26	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................GA-ACGACGAGCGACGA--A---CG--AGC...............................................................................................	22	1	1.00	1	0	0	0	0	1	0
.............................................................................................GCAACAACAACA------------------------------ACAACAAC....................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0
........................................................................................................................................CAACAACAACA---------A------CAA-TAATAAC.....................................................................................................................................................................................................................................................................................	22	18	0.06	1	0	1	0	0	0	0
....................................................................................................CAACA------------------------------ACAACAACAACA---------A------CAA-TA..........................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................ACAACA---------A------CAA-TAATAACAAC..................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droBip1

TA-----GT-------GGTAGC----GGGGGA------------------GCA------GAAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACAACAACA------------------------------ACAACAAGAACA---------A------CAA-CAACAGAAGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGA--A---CG--AGCGTCGACGAAGTGGCGACAA---------AAAAAAAACA-C-CA----------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

C---------------GGGAGC----GGGGGA------------------GCAAAAGCAAAAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACAACACCA---------------------------------------------------A------TAA-CAGCAACAGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGA--A---CG--AACGTCGACGAAGTGGCGACAAAACCAACAAAA-AAAA------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

G------------------GGC----GGGGGA------------------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAGCAGGAACA---------------------------------------------------A------CAA-CAACAACGGCAACCGGCCC----------GTTTGGAA------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGA--A---CG--AGCGTCGACGAAGTGGCGACAA---------AA-AAAA----G-C-----------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

G------------------GGC----GGGGGA------------------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAGCAGC---A---------------------------------------------------A------CAA-CAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGA--A---CG--AGCGTCGACGAAGTGGCGACAA--------AAA-AAAA----G-CTCGAG------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GT-----GCGGACCAAGGGGGC----GGGGGA------------------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAGCAGC---A---------------------------------------------------A------CAA-CAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGA--A---CG--AGCGTCGACGAAGTGGCGACAA---------AA-AAAA----G-CTCGAG------------------------------------CGAGT-------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

C------------------GGC----GCGGGAGCGA--GGGGC------AGCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCA------------------------------------------------------------A------CAA-CAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGA--A---CG--AGCGCCGACGAAGTGGCGACAA-------------AAA----G-CACGAG------------------------------------CGAGC-------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

A------------------GGC----GGGGCTGCGG--GGGTA-------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCA------------------------------------------------------------A------CAA-CAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGA--A---CG--AGCGTCGACGAAGTGGCGACAG-------AAAA-AAAA----G-CACGAG------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GGC--CAGA-------GAAGGC----GGGGGA------------------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAAAAGCAACA---------------------------------------------------A------CAA-CAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGA--A---CG--AGCGTCGACGAAGTGGCGACAA---------AA-AAAA----G-CACGAG------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

G------------------GGC----GGGGGA------------------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAAC------A---------------------------------------------------C------CAA-CAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGA--A---CG--AGCGTCGACGAAGTGGCGACAA--CCAAAAAAG-AAAA----G-CA----------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................................................................................................................................................................................CGACGAGCGACGA--A---CG--AG................................................................................................	18	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................TTTCAACAGCGA-ACGACGAGCGAC..............................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TTCAACAGCGA-ACGACGA...................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................ACGACGAGCGACGA--A---CG--AG................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................ACGACGAGCGACGA--A---CG--AGCG..............................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CGACGAGCGACGA--A---CG--AGC...............................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................CGAACTTACGGCCAACAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CGACGA--A---CG--AGCGTCGACGAAGTGG..................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................ACTTACGGCCAACAGCAGCAG.....................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................CGGCCAACAGCAGCAGCAAC------C---------------------------------------------------.......................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................CAGCAGCAGCAAC------A---------------------------------------------------C------CAA-CAACA.......................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

G------------------GGC----GGGGGA------------------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAAC------A---------------------------------------------------C------CAA-CAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGA--A---CG--AGCGTCGACGAAGTGGCGACAA--CCAAAAAAG-AAAA----G-CA----------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................G--AGCGTCGACGAAGTGGC.................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................ACGACGAGCGGCGA--A---CG--AGCGG.............................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................ACGACGAGCGGCGA--A---CG--AGCGT.............................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................GA-ACGACGAGCGGCGA--A---CG--AGCGT.............................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................GA-ACGACGAGCGGCGA--A---CG--A.................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TGTGAAATTAGTACAAATCGTGATTT....................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

G------------------GGC----GGGGGA------------------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAAC------A---------------------------------------------------C------CAA-CAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGA--A---CG--AGCGTCGACGAAGTGGCGACAA--CCAAAAAAG-AAAA----G-CA----------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................................................................................................................................................................................................................................................................................................................................ACAGCGA-ACGACGAGCGGCGA--A---CG--AGC...............................................................................................	27	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................CGGCGA--A---CG--AGCGTCGACGAAGTGGCGAC..............................................................................	29	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................A-ACGACGAGCGGCGA--A---CG--AGCGT.............................................................................................	23	1	1.00	1	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................CAGCGA-ACGACGAGCGGCGA--A---CG--AG................................................................................................	25	1	1.00	1	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................AGCGA-ACGACGAGCGGCGA--A---CG--..................................................................................................	22	1	1.00	1	0	0	0	1

droYak3

G------------------GGC----GGGGGA------------------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAGC------A---------------------------------------------------A------CAA-CAACAACGGCAACCGGCCT----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGA--A---CG--AGCGTCGACGAAGTGGCGACAA--CCAAAAAAG-AAAA----G-CA----------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................................................................................................AACAGCGA-ACGACGAGCGGC..............................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................GA-ACGACGAGCGGCGA--A---CG--AGC...............................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GA--A---CG--AGCGTCGACGAAGTGGC.................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................ACGACGAGCGGCGA--A---CG--AGCG..............................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GCGA-ACGACGAGCGGCGA--A---C.....................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CGACGAGCGGCGA--A---CG--AGCGT.............................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................AGCGA-ACGACGAGCGGCGA--A---CG--..................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................AGCAGCAGC------A---------------------------------------------------A------CAA-CAACAACGG...................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................AGCAGCAGCAGC------A---------------------------------------------------A------CAA-CAAC........................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0

droEre2

G------------------GGC----GGGGGA------------------GCGA-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCA------------------------------------------------------------A------CAA-CAACAACGGCAACCGGCCT----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGA--A---CG--AGCGTCGACGAAGTGGCGACAA--CCAAAAAAG-AAAA----G-CA----------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dmo_2527

scaffold_6680:18264048-18264198 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads