ID:

dmo_2513

 Coordinate:

scaffold_6680:16965447-16965597 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.1 -11.9 -11.9

Flybase annnotation

CDS [Dmoj\GI13622-cds]; exon [dmoj_GLEANR_13534:1]; intron [Dmoj\GI13622-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus-
mature
  1. scaffold_2175:2859-2885 +
  2. scaffold_4382:2373-2399 +
  3. scaffold_5447:303-329 +
  4. scaffold_6367:43486-43512 +
  5. scaffold_6395:41628-41654 +
  6. scaffold_6395:73260-73286 +
  7. scaffold_6395:81511-81537 +
  8. scaffold_6473:15060912-15060938 +
  9. scaffold_6483:37005-37031 +
  10. scaffold_6498:2971707-2971733 +
  11. scaffold_6498:3142522-3142548 +
  12. scaffold_6500:27136701-27136727 +
  13. scaffold_6500:27649429-27649455 +
  14. scaffold_6500:30239882-30239908 +
  15. scaffold_6540:36388-36414 +
  16. scaffold_6540:344260-344286 +
  17. scaffold_6540:1038963-1038989 +
  18. scaffold_6541:1029973-1029999 +
  19. dmo_2513  scaffold_6680:16965496-16965522 +
  20. scaffold_6680:24210271-24210297 +
  21. scaffold_346:687-713 +
  22. scaffold_2687:2184-2210 +
  23. scaffold_3025:3777-3803 +
  24. scaffold_4104:3267-3293 +
  25. scaffold_4315:5246-5272 +
  26. scaffold_5974:1117-1143 +
  27. scaffold_6327:116815-116841 +
  28. scaffold_6496:26623195-26623221 +
  29. scaffold_6498:1135364-1135390 +
  30. scaffold_6498:2326771-2326797 +
  31. scaffold_6500:12646356-12646382 +
  32. scaffold_6500:30258443-30258469 +
  33. scaffold_6500:31362973-31362999 +
  34. scaffold_6501:242892-242918 +
  35. scaffold_6540:62365-62391 +
  36. scaffold_6540:982812-982838 +
  37. scaffold_6540:1136312-1136338 +
  38. scaffold_6540:1223777-1223803 +
  39. scaffold_6541:1241774-1241800 +
  40. scaffold_6680:23159896-23159922 +
star
  1. scaffold_2781:1436-1462 -
  2. scaffold_3728:1844-1870 -
  3. scaffold_4703:423-449 -
  4. scaffold_6359:940538-940564 -
  5. scaffold_6359:1606062-1606088 -
  6. scaffold_6384:67892-67918 -
  7. scaffold_6437:42389-42415 -
  8. scaffold_6448:6231-6257 -
  9. scaffold_6482:309774-309800 -
  10. scaffold_6491:363243-363269 -
  11. scaffold_6500:23530485-23530511 -
  12. scaffold_6500:27959430-27959456 -
  13. scaffold_6500:28521558-28521584 -
  14. scaffold_6500:31951269-31951295 -
  15. scaffold_6540:2801581-2801607 -
  16. scaffold_6540:5272864-5272890 -
  17. scaffold_6541:1735229-1735255 -
  18. scaffold_6680:18364155-18364181 -
  19. scaffold_6680:23073633-23073659 -
  20. scaffold_6680:24385361-24385387 -
  21. scaffold_2062:1754-1780 -
  22. scaffold_4020:2518-2544 -
  23. scaffold_4261:3533-3559 -
  24. scaffold_5093:201-227 -
  25. scaffold_6328:3911133-3911159 -
  26. scaffold_6410:36599-36625 -
  27. scaffold_6475:50655-50681 -
  28. scaffold_6475:81674-81700 -
  29. scaffold_6482:2254106-2254132 -
  30. scaffold_6496:2719796-2719822 -
  31. scaffold_6496:7553229-7553255 -
  32. scaffold_6496:26827989-26828015 -
  33. scaffold_6498:2236252-2236278 -
  34. scaffold_6500:11498321-11498347 -
  35. scaffold_6500:15528303-15528329 -
  36. scaffold_6500:15580027-15580053 -
  37. scaffold_6500:19263583-19263609 -
  38. scaffold_6500:28401224-28401250 -
  39. scaffold_6680:13203554-13203580 -
  40. scaffold_6832:7909-7935 -
  41. scaffold_78:544-570 +
  42. scaffold_542:362-388 +
  43. scaffold_1882:8829-8855 +
  44. scaffold_2680:1573-1599 +
  45. scaffold_2713:31-57 +
  46. scaffold_3378:616-642 +
  47. scaffold_4092:4404-4430 +
  48. scaffold_4231:8539-8565 +
  49. scaffold_5311:1118-1144 +
  50. scaffold_5781:651-677 +
  51. scaffold_6456:13072-13098 +
  52. scaffold_6460:83071-83097 +
  53. scaffold_6473:11577742-11577768 +
  54. scaffold_6482:2245127-2245153 +
  55. scaffold_6498:3132219-3132245 +
  56. scaffold_6498:3142561-3142587 +
  57. scaffold_6540:25572238-25572264 +
  58. scaffold_6541:1006200-1006226 +
  59. scaffold_6541:1230237-1230263 +
  60. dmo_2513  scaffold_6680:16965535-16965561 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CATCTGCTCCTGCTTCCTCTACCATCAGTTTCGCACCTGGAAGCGCAATTGTAAGTATGCCCACGACGACAACAAAGAGCAAACAACAAGTAAGAAAGCTATAGTCGAGACTGCTCGACTACGAGATCCCCTGAACCCTTGGAGCAATAGATATTTCAATACTTTTTCGCGACTTTCAGCTTACACAAGAAACACGCACACACACACACACACACACGCACGTACGCACACACAGGTATACATACACACAC
***************************************************************************************************..((((((((....)))))))).(((((....((..((...))..))......)))))........************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
...................................................................................................TATAGTCGAGACTGCTCGACTACGAGA............................................................................................................................. 27 0 20 1.10 22 22 0 0 0
......................CATCAGTTTCGCACCTGGAAGCGCA............................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0
...CTTCTCCTGCTTCCTCTACC.................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0
...................................................................................................TATAGTCGAGACTGCTCGACTACGAG.............................................................................................................................. 26 0 20 0.35 7 7 0 0 0
..........................................................................................................................................TTGGAGCAATAGATATTTCAATACTTT...................................................................................... 27 0 20 0.25 5 0 0 5 0
.....................................................................................................................................................................................TACACAAGAAACACGCACACACACA............................................. 25 0 20 0.20 4 4 0 0 0
CATCTTCTCCTGCTTCCTCC....................................................................................................................................................................................................................................... 20 2 6 0.17 1 1 0 0 0
.....................................................................................................................................................................................TACACAAGAAACACGCACAC.................................................. 20 0 20 0.15 3 0 3 0 0
..............................................................................................................................................................................TTCAGCTTACACAAGAAACACGCACAC.................................................. 27 0 20 0.15 3 3 0 0 0
...................................................................................................................................................TAGATATTTCAATACTTTTTCGCGAA.............................................................................. 26 1 20 0.10 2 2 0 0 0
...................................................................................................TATAGTCGAGACTGCTCGACT................................................................................................................................... 21 0 20 0.10 2 2 0 0 0
....................................................................................................ATAGTCGAGACTGCTCGACTACGAGA............................................................................................................................. 26 0 20 0.10 2 2 0 0 0
...................................................................................................TATAGTCGAGACTGCTCGACTAC................................................................................................................................. 23 0 20 0.10 2 2 0 0 0
.........................................................................................................CGAGACTGCTCGACTACGA............................................................................................................................... 19 0 20 0.10 2 2 0 0 0
..........................................................................................................................................................................................AAGAAACACGCACACACA............................................... 18 0 20 0.10 2 2 0 0 0
...................................................................................................TATAGTCGAGACTGCTCGACTACGA............................................................................................................................... 25 0 20 0.10 2 2 0 0 0
..............................................................................GCAAACTACAAGAAAGAAGG......................................................................................................................................................... 20 3 20 0.05 1 0 0 1 0
...............................................................................................TAGCTATAGTCGAGACTGCTCGACTA.................................................................................................................................. 26 1 20 0.05 1 0 1 0 0
.....................................................................................................................................AACCCTTGGAGCAATAGATATTTCA............................................................................................. 25 0 20 0.05 1 0 1 0 0
...............................................................................................................................CCCCTGAACCCTTGGAGCAATAGATAT................................................................................................. 27 0 20 0.05 1 0 1 0 0
..................................................................................................................................................................................GCTTACACAAGAAACACGCACA................................................... 22 0 20 0.05 1 0 1 0 0
...............................................................................................................................................................................TCAGCTTACACAGGAAACACGCACACAC................................................ 28 1 20 0.05 1 1 0 0 0
......................................................................................................................................................................................ACACAAGAAACACGCACA................................................... 18 0 20 0.05 1 0 1 0 0
........................................................................................................................................................................................................CACACACACACACACACGCA............................... 20 0 20 0.05 1 1 0 0 0
..........................................................................................................................................TTGGAGCAATAGATATTTCAATACT........................................................................................ 25 0 20 0.05 1 0 1 0 0
......................................................................................................................CTACGAGATCCCCTGAACCCTTG.............................................................................................................. 23 0 20 0.05 1 1 0 0 0
...................................................................................................................................................TAGATATTTCAATACTTTTTCGCG................................................................................ 24 0 20 0.05 1 0 0 0 1
.......................................................................................................................TACGAGATCCCCTGAACCCTTGGAGCAA........................................................................................................ 28 0 20 0.05 1 1 0 0 0
............................................................................................................................................................................................................CACACACACACACGCACGTA........................... 20 0 20 0.05 1 1 0 0 0
......................................................................................................................................................................................ACACAAGAAACACGCACACACACA............................................. 24 0 20 0.05 1 1 0 0 0
............................................................................................................GACTGCTCGACTACGAGATCCCCTGA..................................................................................................................... 26 0 20 0.05 1 1 0 0 0
..................................................................................................................................CTGAACCCTTGGAGCAATAGATAT................................................................................................. 24 0 20 0.05 1 0 1 0 0

Anti-sense strand reads

GTAGACGAGGACGAAGGAGATGGTAGTCAAAGCGTGGACCTTCGCGTTAACATTCATACGGGTGCTGCTGTTGTTTCTCGTTTGTTGTTCATTCTTTCGATATCAGCTCTGACGAGCTGATGCTCTAGGGGACTTGGGAACCTCGTTATCTATAAAGTTATGAAAAAGCGCTGAAAGTCGAATGTGTTCTTTGTGCGTGTGTGTGTGTGTGTGTGTGCGTGCATGCGTGTGTGTCCATATGTATGTGTGTG
**************************************************************************************..((((((((....)))))))).(((((....((..((...))..))......)))))........*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V110
male body
.....................................................................................TGTTCATTCTTTCGATATCAGCTC.............................................................................................................................................. 24 0 20 1.75 35 35 0 0 0
...................................................................................GTTGTTCATTCTTTCGATATCAGCTC.............................................................................................................................................. 26 0 11 0.45 5 5 0 0 0
......................................................................................................................................TGGGAACCTCGTTATCTATAAAGT............................................................................................. 24 0 20 0.25 5 0 5 0 0
...............................................................................................................................................................ATGAAAAAGCGCTGAAAGTCGAATGT.................................................................. 26 0 20 0.15 3 0 0 3 0
..................................................................................TGTTGTTCATTCTTTCGATATCAGCTC.............................................................................................................................................. 27 0 8 0.13 1 1 0 0 0
...........................................................................................................................................................................TGAAAGTCGAATGTGTTCTTT........................................................... 21 0 20 0.10 2 2 0 0 0
........................................................................................................................................GGAACCTCGTTATCTATAAAGTT............................................................................................ 23 0 20 0.05 1 1 0 0 0
......................................................................................................................................TGGGAACCTCGTTATCTATAAAGTT............................................................................................ 25 0 20 0.05 1 0 0 0 1
...............................................................................................................................................................................................................................TGCGTGTGTGTCCATATGTAT....... 21 0 20 0.05 1 1 0 0 0
....................................................................................................TATCAGCTCTGACGAGCTGATGCTCTT............................................................................................................................ 27 1 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6680:16965397-16965647 + dmo_2513 CATCTG--CTCCTGCTT----CCTCTACCATCAGTTTCGCACCTGGAAGCGCAATTGTAAGTA----------------T-------------------GCCCACGACGACAACAAAGAGCAAACA--ACAA-------GTAAG-------------------------------------AAAGCTATAGTCGAGAC----TGCTCGACTACGAGATCCCCTGAACCCTTGGAGCAATAGATATTTCAATAC--------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------TTT-CGCGACTTTCAGC---TT-------ACACAAG----------AAACAC--------GCACAC----ACACACA----CACACACACGCACGTACGCACACACA------------GGT------------ATACATA------CACACAC-
droVir3 scaffold_12963:11312751-11312959 + CATTTGC---------------------------------------ATACGAAATTGAAAGC----------AAATAT-----------------------TTGCAGTGATACAAAAAAAAAAA--AAACAA-------GTAGC-------------------------------------AATGCTCTAGTCGGGAA----TGCACGACTAGCCGATACGCTGAACCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGTCGAGCGCACTGTGAG---------------GCA---------------------TTCCAGCTT---------C---------------------CTTCT------------TTCA----------TACACAACAAC--ACG--CATA--------CATACACACATTC---------------TGCGCACAGATGAACATTCAGA------TAGACAT-
droGri2 scaffold_15103:60747-60950 + AATACG----------TGTTTTCTCTTGTCGCATTTTCCAAGCTA-AA--------------------ACATAAAAATGAGTAA----------------------ATAAAAATAAAAGAGACA--AAACAA-------GTAAG-------------------------------------AATGCTGAAATCGAGTG----A-GCCCAATACTAG--------------CGGTATAAGAAAAATATTAAT---------------------------------------------------------------------GT-----------AACGC-------------------------------------------------------------------------------------------------------------------AC----------------------------------------------------------TCA--CAC----ACACAC----ACACACA----CACACACACACACACACACACACACA------------CAC------------ATACACA------CACACAC-
droWil2 scf2_1100000004540:2146331-2146514 + CCAACA------------------------GCAGTAGCAGAATTGGAATTGAAG------------------------------------TTGGAGTTTGGTGGTGAAGGCGGGAAATTGCAGCCA--CCGA-------TGACG-------------------------------------ACGGCG------------------------------------------------------------------ACGAGGCG-AC----CAA----------------------TC----------------GACCAATCGACCG-------TCAACCCATTTATA-TTTCCTTACCTAC---------------------------------ATTTTGC--------------------------------------------------------------------------------------AT-------AT-------------------------------------------------------ACA-AAACACACACAAACACA------------AAC------------ACACACA------CACACAC-
dp5 Unknown_group_15:51507-51743 - TTCAT-----------------------CGTCAGTTTCGC--C-----------------------------AACAATGT-------------------GCCC---GTGACAACCACAAAAACA--GAATAG-------TTCGAAGCCTATTTCAGCGTCTGCGATAATCCATAGCCCTGAACTGTTGTGATTGAGTT----T-CGTGAATCATAACATCCAGATATTC--GA-------------------------------------------------------------------------------ATTA-----------------------------------------------------------------------------------------------------------------AGCGACTTCTACAGATTCATCAAGGT----------------------------------------------------------GTA--CATACATAAAACT----ACACTAG----GTTATGTATGCATATACGTATGCACA------------TAT------------GTATATA------CACACAT-
droPer2 scaffold_13:899400-899618 + TACCTG--CTGCTGTG-----GCTCCACCTCCAGTTGCAC--CTG--------ATCAGGAG-------GACGACGA-------------------------CG---------A-----------------------------CG-------------------------------------ATGACG------------------------------------------------------------------ACGAGGAG-GAGGAAGAACACGAAGACGAGGATCTGGATGTGGATGTCGATGTCGAAC-TG---CCATCAGAACACGG----TGCCT--------------------------------------------------------AGGATCCT---------------ACACAACACTTATGG---------------------TTCCATATA---------C--------GCA--AATCAATCT------------------------------------------------------------CCAAAACGCACACACA------------CAC------------ACACACA------CACACAC-
droAna3 scaffold_12943:1335575-1335728 - AGCCAT--AAAC--------------------------------------------------------------------------------------------------------------------------------GAGA-------------------------------------CTCTCCTCGGCGCAATT----T-CTTAATTTCAATTT--------------------------------------------------------------------------------------------------------------------------------------------------ATGTATTTCATTTTTCTCAAACTTTTTTATCTTTC--------------------------------------------------------------------------------------GG-------AT----GCAA------A-GCCACAG------GCACAG----GCACTGG----CACTCACACGCACGCACGCACACGG-----------CACAC------------CGACACG------GGGACAC-
droBip1 scf7180000396427:21534-21694 - GAAAACC----------------------------------------------------------------------------------------------------------AAGAAGGCCAAGA--ACAA-------GCCG-----------------------------------------------------------------------------------------------------------------------AA----GAA----------------------CG----------------AACGAACCGACAGTGCTCCG----T--CT--------------------------------------------------------CGCTGCTT---------------CCAGAACTCCAATAA---------------------TTCCAGTTT---------C--------CTC--TTCCAGTCT-------------------TC--------AGCCAA----AGACACG----CTCACACACACACACACACACACAAC------------AGA------------GTGCAGA------TACAGAT-
droKik1 scf7180000302398:414013-414128 - AAGCAT--T--------------------------------------------------------------------------------------------------------GAAAACATTGATA--ACAA-------AACA---------------------------------------------TATTTTAC-----------------------------------------------------------------C----------------------------------------------------------------------------TTTAAT-----------------------------------------------------------------------------------------------------------------------------GCGT---------------------ACACATA----------CACAAC--------ACACAC----ACACACA----CACACACACACACACACACACACACA------------CAC------------ACACACA------CACACAC-
droFic1 scf7180000448889:33390-33589 - CCTGCT----------C----CTTCCGCACTCCGCTTTCCGCCAAC----------------------AACAACAAGTGCATGGGGCGAGTTG------GACCTCGACGCGTAAAAAATGCAAATC--CCAA-------GTCA---------------------------------------------AAGCTTAGCG----C-CGCAGCCCCCGT-------------------------------------ACGTGGCA-AC----CTG----------------------GC----------------AACATACGTGCCA-------CCACCCCCTTTACA----------------------------------------------------------------------------------------------CGCCCCC----------------------------------------------------------------------------------------------------------CCTACACACACACACACACA------------CAC------------CCACACA------AGCACA--
droEle1 scf7180000491028:1116804-1116953 + CGACAAC-----------------------------------------------------------------------------------------------------------GAACTGCGAGTT--ACAA-------ATCA----------------------------------------------------------------------------------------------------------------------------------AAAAGGAAATAGCCTAGAGATAAATAAATACCCCAGAA-AC---CTCTCAGAGAAAAG----CTCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACACAC----ACACAC----ACACACA----CACACACACACACACACACACACACA------------CAC------------ACACACA------CACACAC-
droRho1 scf7180000765723:2343-2504 + AAGAAA--------------------------------------------------------------AACTATAAATGCCTAA----------------------ATCAAGA-AAAATAAGTA--AAACAA-------GAAAA-------------------------------------AACGCTATGGTCGAGTG----C-CTCGACTATTAGATACCCGTTACTCA----------------------------------------------------------------------------------GTTA---------------------------AA-CAATTGCAACTGT---------------------------------GTAC---------------------------A---------------------------------------------------------------------------------------------------------------------A----TGTAAATACATACATATGTATATGCT------------TAC------------ATACATA------CACACAT-
droBia1 scf7180000301345:234498-234658 - CGTGCG----------T---------------------------GTATGTGCAATTGTTATTATTAACA-------------------------------------ACAACAA-CAAACAAACA--AAATAGAGAAGAAATAG----------------------------------------CGTTACTT-----------------------------------------------------------------------------------------------------------------------------------------------TTCTTTTAACC----------------------------------------------------------------------------------------------GGATTCCGG----TAC----------------------------------------------------------TTA----------CACACACCCAC----ACACACA--------CAGACACAAACA--AA------------CACACACACACACCCACTCC-G------CTCACACC
droTak1 scf7180000412524:5545-5729 + AAC-------------------------------------------------------------------------------------------------------------------------------AA-------GAGAG-------------------------------------AACGCTATAGTCGGGTTCGTGT-CCCGACTATCTAATACCCGTCACTCG----------------------------------------------------------------------------------GCTA---------------------------AAGGAAGTGCGAGGGTGAAGGA------------------------------------TAT---------------ATACAATTTTTTTGATTGCGTATAACTTTTTAAGAC----------------------------------------------------------AGA--CAG----ACAGAC----AGACAGA----CAGACAGACAGACAGACAGACAGACA------------GAC------------AGACAGA------CAGACAG-
droEug1 scf7180000409040:52234-52364 + CTTCAA--------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTC-----------------------------CTAAGTTTT-----CTCTATATATA---GCAT-----ACATATT-GGCGCTCTG-GCCAT--------ACACGC----ACACACA----CACACACAGATATACACACACATGCATGCAAACAAACACAC------------TTAGACGCATTTTCCCACAC-
dm3 chrX:4593524-4593620 + TTTCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC--------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------TTCGTTGGCGCTTAGC---AG-------AGGCAAG---------A-ACC----------ACACAC----ACACACA----CACACACACACACACACACACACACA------------CAC------------ACACACA------AACACAC-
droSim2 x:4889152-4889272 - GAAGCG-TTGGCAAT------------------------------------------------------------------------------------------------------ATGG------------------------------------------------------------------ATATTCGGGTT---------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------TGC-TTTGACATTGATG---AG-------ACAGGAC-AA------G-GCTAG--------ACACAC----ACACACA----CACACACAGACACACACACACACACA------------GAC------------ACACACA------CACACAC-
droSec2 scaffold_11:161474-161590 - AAGGAA------------------------------------------------------------------------------------------------------------------AGCA--CAACAA-------GAACG-------------------------------------AAAGCTATAGTTGAGTT----T-CTCGACTATCAGATACCCGTTACTCAGCG-----------------------------------------------------------------------------------------------------------------------------A---------------------------------GTAC---------------------------A-------ACA---------------------TTCAAACTTTT-----TTTGGCATATC---GA-------AA----G--------------------------------------------------------------------------------------------------AAATTGG------CACACA--
droYak3 X:11660889-11660998 + GGACCA-GCAGCAAT--------------------------------------------------------------------------------------------------------------G--C------------------------------------------------------TGCTACATTTGCGTC---------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGA---------GCTGC---------------------CACTTA----------GTAAAA--------ACTCAC----TCACACT----CCCACGCACACACACACACACACACA------------GAT------------ACACATA------CACACAC-
droEre2 scaffold_4770:9160052-9160246 - CAGCAGC-----------------------------------------------------------------------------------------------------------AAGTTGCTACCG--AAAA-------CCAAA-------------------------------------CGATCTTTGGTCACCTT----C-TGGAATTCTTGTT-CGCCTGGTAATTCAAACCGAAAGATCTTTCAAT-----------------------------------------------------------TTGCCA---------------------------AAAAAATTAACAT----------------------------------------TTTGCAGGCAAAATTGTGAGATTACACA-----------------------------------------------------------------------------------------------------ACATAC----ATATGTA----CATACATATGTACATACATACATACA------------TAC------------ATACATA------CATACAT-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CATCTG--CTCCTGCTT----CCTCTACCATCAGTTTCGCACCTGGAAGCGCAATTGTAAGTA----------------T-------------------GCCCACGACGACAACAAAGAGCAAACA--ACAA-------GTAAG-------------------------------------AAAGCTATAGTCGAGAC----TGCTCGACTACGAGATCCCCTGAACCCTTGGAGCAATAGATATTTCAATAC--------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------TTT-CGCGACTTTCAGC---TT-------ACACAAG----------AAACAC--------GCACAC----ACACACA----CACACACACGCACGTACGCACACACA------------GGT------------ATACATA------CACACAC-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................TATAGTCGAGAC----TGCTCGACTACGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................27201.10222200000
............................CATCAGTTTCGCACCTGGAAGCGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
..........................................................................................................................................................................................TATAGTCGAGAC----TGCTCGACTACGAG....................................................................................................................................................................................................................................................................................................................................................................................................................26200.357700000
.....................................................................................................................................................................................................................................TTGGAGCAATAGATATTTCAATAC--------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------T..........................................................................................................................................................27200.255000005
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------ACACAAG----------AAACAC--------GCACAC----ACACA................................................................................25200.204400000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------ACACAAG----------AAACAC--------GCACAC----.....................................................................................20200.153000030
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGC---TT-------ACACAAG----------AAACAC--------GCACAC----.....................................................................................27200.153300000
..............................................................................................................................................................................................................................................TAGATATTTCAATAC--------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------TTT-CGCGAA.................................................................................................................................................26200.102200000
..........................................................................................................................................................................................TATAGTCGAGAC----TGCTCGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................21200.102200000
...........................................................................................................................................................................................ATAGTCGAGAC----TGCTCGACTACGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................26200.102200000
..........................................................................................................................................................................................TATAGTCGAGAC----TGCTCGACTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................23200.102200000
................................................................................................................................................................................................CGAGAC----TGCTCGACTACGA.....................................................................................................................................................................................................................................................................................................................................................................................................................19200.102200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG----------AAACAC--------GCACAC----ACA..................................................................................18200.102200000
..........................................................................................................................................................................................TATAGTCGAGAC----TGCTCGACTACGA.....................................................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
................................................................................................................................................................................................................................AACCCTTGGAGCAATAGATATTTCA...................................................................................................................................................................................................................................................................................................................................................................................25200.051000010
..........................................................................................................................................................................................................................CCCCTGAACCCTTGGAGCAATAGATAT.......................................................................................................................................................................................................................................................................................................................................................................................27200.051000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---TT-------ACACAAG----------AAACAC--------GCACA..........................................................................................22200.051000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAAG----------AAACAC--------GCACA..........................................................................................18200.051000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----ACACACA----CACACACACGCA..............................................................20200.051100000
.....................................................................................................................................................................................................................................TTGGAGCAATAGATATTTCAATAC--------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....................................................................................................................................................................25200.051000010
.................................................................................................................................................................................................................CTACGAGATCCCCTGAACCCTTG....................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
..............................................................................................................................................................................................................................................TAGATATTTCAATAC--------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------TTT-CGCG...................................................................................................................................................24200.051010000
..................................................................................................................................................................................................................TACGAGATCCCCTGAACCCTTGGAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACA----CACACACACGCACGTA..........................................................20200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAAG----------AAACAC--------GCACAC----ACACA................................................................................24200.051100000
...................................................................................................................................................................................................GAC----TGCTCGACTACGAGATCCCCTGA...........................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.............................................................................................................................................................................................................................CTGAACCCTTGGAGCAATAGATAT.......................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
droVir3
CATTTGC---------------------------------------ATACGAAATTGAAAGC----------AAATAT-----------------------TTGCAGTGATACAAAAAAAAAAA--AAACAA-------GTAGC-------------------------------------AATGCTCTAGTCGGGAA----TGCACGACTAGCCGATACGCTGAACCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGTCGAGCGCACTGTGAG---------------GCA---------------------TTCCAGCTT---------C---------------------CTTCT------------TTCA----------TACACAACAAC--ACG--CATA--------CATACACACATTC---------------TGCGCACAGATGAACATTCAGA------TAGACAT-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
AATACG----------TGTTTTCTCTTGTCGCATTTTCCAAGCTA-AA--------------------ACATAAAAATGAGTAA----------------------ATAAAAATAAAAGAGACA--AAACAA-------GTAAG-------------------------------------AATGCTGAAATCGAGTG----A-GCCCAATACTAG--------------CGGTATAAGAAAAATATTAAT---------------------------------------------------------------------GT-----------AACGC-------------------------------------------------------------------------------------------------------------------AC----------------------------------------------------------TCA--CAC----ACACAC----ACACACA----CACACACACACACACACACACACACA------------CAC------------ATACACA------CACACAC-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CCAACA------------------------GCAGTAGCAGAATTGGAATTGAAG------------------------------------TTGGAGTTTGGTGGTGAAGGCGGGAAATTGCAGCCA--CCGA-------TGACG-------------------------------------ACGGCG------------------------------------------------------------------ACGAGGCG-AC----CAA----------------------TC----------------GACCAATCGACCG-------TCAACCCATTTATA-TTTCCTTACCTAC---------------------------------ATTTTGC--------------------------------------------------------------------------------------AT-------AT-------------------------------------------------------ACA-AAACACACACAAACACA------------AAC------------ACACACA------CACACAC-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
TTCAT-----------------------CGTCAGTTTCGC--C-----------------------------AACAATGT-------------------GCCC---GTGACAACCACAAAAACA--GAATAG-------TTCGAAGCCTATTTCAGCGTCTGCGATAATCCATAGCCCTGAACTGTTGTGATTGAGTT----T-CGTGAATCATAACATCCAGATATTC--GA-------------------------------------------------------------------------------ATTA-----------------------------------------------------------------------------------------------------------------AGCGACTTCTACAGATTCATCAAGGT----------------------------------------------------------GTA--CATACATAAAACT----ACACTAG----GTTATGTATGCATATACGTATGCACA------------TAT------------GTATATA------CACACAT-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................AGCGTCTGCGATAATCCATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................ATTA-----------------------------------------------------------------------------------------------------------------AGCGACTTCTACAGATT..............................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................ATAACATCCAGATATTC--GA-------------------------------------------------------------------------------AT..................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................AACTGTTGTGATTGAGTT----T-CG..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................AGCCTATTTCAGCGTCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
TACCTG--CTGCTGTG-----GCTCCACCTCCAGTTGCAC--CTG--------ATCAGGAG-------GACGACGA-------------------------CG---------A-----------------------------CG-------------------------------------ATGACG------------------------------------------------------------------ACGAGGAG-GAGGAAGAACACGAAGACGAGGATCTGGATGTGGATGTCGATGTCGAAC-TG---CCATCAGAACACGG----TGCCT--------------------------------------------------------AGGATCCT---------------ACACAACACTTATGG---------------------TTCCATATA---------C--------GCA--AATCAATCT------------------------------------------------------------CCAAAACGCACACACA------------CAC------------ACACACA------CACACAC-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................GCAC--CTG--------ATCAGGAG-------GACGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21148.00484610001
....................................GCAC--CTG--------ATCAGGAG-------GACGACGA-------------------------CG---------A-----------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27114.00141400000
....................................GCAC--CTG--------ATCAGGAG-------GAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18112.00121200000
....................................GCAC--CTG--------ATCAGGAG-------GACGACGA-------------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24112.00121110000
...................................TGCAC--CTG--------ATCAGGAG-------GACGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.0010910000
............................................................................................................................................................................................................................................................................................................CGATGTCGAAC-TG---CCATC..........................................................................................................................................................................................................................................................................................................1816.006600000
...................................TGCAC--CTG--------ATCAGGAG-------GACGACGA-------------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2516.006402000
...................................TGCAC--CTG--------ATCAGGAG-------GACGACGA-------------------------CG---------A-----------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.004400000
..............................................................................................................................................................................................................................................................................ACACGAAGACGAGGATCTGGAT........................................................................................................................................................................................................................................................................................................................................2214.004400000
...............................................................................................................................................G-------------------------------------ATGACG------------------------------------------------------------------ACGAGGAG-GAGGAAGAACAC..........................................................................................................................................................................................................................................................................................................................................................2713.003300000
.................................................................................................................................................................................................................................................................................CGAAGACGAGGATCTGGAT........................................................................................................................................................................................................................................................................................................................................1913.003300000
...................................TGCAC--CTG--------ATCAGGAG-------GAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003300000
.....................................CAC--CTG--------ATCAGGAG-------GACGACGA-------------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003300000
................................................................................................................................................................................................................................................................................ACGAAGACGAGGATCTGGATGTGGATGT................................................................................................................................................................................................................................................................................................................................2813.003300000
.................................................................................................................................................................................................................................................................................CGAAGACGAGGATCTGGATGTGGATGT................................................................................................................................................................................................................................................................................................................................2712.002200000
.....................................CAC--CTG--------ATCAGGAG-------GACGACGA-------------------------CG---------A-----------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002110000
.......................................................................................................................................................................................................................................................................................................GATGTCGATGTCGAAC-TG---CC.............................................................................................................................................................................................................................................................................................................2012.002200000
.............................................................................................................................................................................................................................................................................AACACGAAGACGAGGATCTGGAT........................................................................................................................................................................................................................................................................................................................................2312.002200000
.......................................................................................................................................................................................GACG------------------------------------------------------------------ACGAGGAG-GAGGAA................................................................................................................................................................................................................................................................................................................................................................1812.002000002
....................................................................................................................................................................................................................................................................................AGACGAGGATCTGGATGTGGATGTC...............................................................................................................................................................................................................................................................................................................................2512.002020000
.......................................................................................................................................................................................GACG------------------------------------------------------------------ACGAGGAG-GAGGAAG...............................................................................................................................................................................................................................................................................................................................................................1912.002200000
.....................................................................................................................................................................................................................................................................................GACGAGGATCTGGATGTGGATGT................................................................................................................................................................................................................................................................................................................................2312.002001001
.ACCTG--CTGCTGTG-----GCTCCACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
..............................CCAGTTGCAC--CTG--------ATCAGGAG-------GAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
..................................................................................................................................................................................................................................................................................................ATGTGGATGTCGATGTCGAAC-TG---CC.............................................................................................................................................................................................................................................................................................................2512.002200000
......................................................................................................................................................................................................................................................................................................GGATGTCGATGTCGAAC-TG---CC.............................................................................................................................................................................................................................................................................................................2112.002200000
.......................................................................................................................................................................................................................................................................................CGAGGATCTGGATGTGGATGT................................................................................................................................................................................................................................................................................................................................2112.002101000
........................................................................................................................................................................................................................................................................................GAGGATCTGGATGTGGAT..................................................................................................................................................................................................................................................................................................................................1821.503000003
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT------------------------------------------------------------CCAAAACGCACACACA------------CAC------------A....................2211.001001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA---------C--------GCA--AATCAATCT------------------------------------------------------------CCA.............................................................1911.001001000
....................................GCAC--CTG--------ATCAGGAG-------GACGACGA-------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..............................................................................................................................................................................................................................................................CGAGGAG-GAGGAAGAACAT..........................................................................................................................................................................................................................................................................................................................................................1911.001100000
............................................................................................................................................................................................................................................................................................................CGATGTCGAAC-TG---CCATCA.........................................................................................................................................................................................................................................................................................................1911.001100000
.................................GTTGCAC--CTG--------ATCAGGAG-------GACGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...............................................................................................................................................................................................................................................................................................................................ATCAGAACACGG----TGCCT--------------------------------------------------------AGG.............................................................................................................................................................................................................................2011.001010000
...........CTGTG-----GCTCCACCTCCAGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
....................................GCAC--CTG--------ATCAGGAG-------GACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
............................................................................................................................................................................................................................................................................................................CGATGTCGAAC-TG---CCATCAGA.......................................................................................................................................................................................................................................................................................................2111.001010000
............................................G--------ATCAGGAG-------GACGACGA-------------------------CG---------A-----------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.....................................................................................................................................................................................................................................................................................GACGAGGATCTGGATGTGGATG.................................................................................................................................................................................................................................................................................................................................2211.001000001
......................................AC--CTG--------ATCAGGAG-------GACGACGA-------------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
....TG--CTGCTGTG-----GCTCCACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..........................................................................GA-------------------------CG---------A-----------------------------CG-------------------------------------ATGACG------------------------------------------------------------------ACGAGGAG-GG....................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..................................................................................................................................................................................................................................................................................GAAGACGAGGATCTGGATGTGGATG.................................................................................................................................................................................................................................................................................................................................2511.001010000
.....................................................................................................................................................................................ATGACG------------------------------------------------------------------ACGAGGAG-GAGGAAGAACACGA........................................................................................................................................................................................................................................................................................................................................................2811.001100000
..........................................................................GA-------------------------CG---------A-----------------------------CG-------------------------------------ATGACG------------------------------------------------------------------ACGAGGAG-GA....................................................................................................................................................................................................................................................................................................................................................................2311.001100000
....TG--CTGCTGTG-----GCTCCACCTCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..................................................................................................................................................................................................................................................................................................ATGTGGATGTCGATGTCGAAC-....................................................................................................................................................................................................................................................................................................................2111.001001000
..............................................................................................................................................................................................................................................................CGAGGAG-GAGGAAGAACAC..........................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................................................................................................................................GAAC-TG---CCATCAGAACACGG----T............................................................................................................................................................................................................................................................................................2111.001001000
.........................................................................................................................................................................................................................................................................GAAGAACACGAAGACGAGGAT..............................................................................................................................................................................................................................................................................................................................................2111.001100000
.................................GTTGCAC--CTG--------ATCAGGAG-------GAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................CACGAAGACGAGGATCTGGAG........................................................................................................................................................................................................................................................................................................................................2111.001100000
.......................................................CAGGAG-------GACGACGA-------------------------CG---------A-----------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.672200000
..............................................................................................................................................CG-------------------------------------ATGACG------------------------------------------------------------------ACGAGGAG-GAGG..................................................................................................................................................................................................................................................................................................................................................................2020.501000001
.....................................................................................................................................................................................................................................................................................GACGAGGATCTGGATGTGGATGG................................................................................................................................................................................................................................................................................................................................2320.501001000
......................................................................................................G---------A-----------------------------CG-------------------------------------ATGACG------------------------------------------------------------------ACGAGGAG-GA....................................................................................................................................................................................................................................................................................................................................................................2020.501010000
...............................................................................................................................................G-------------------------------------ATGACG------------------------------------------------------------------ACGAGGAG-GAGGAAA...............................................................................................................................................................................................................................................................................................................................................................2220.501000100
.................................................................................................................................................................................................................................................................................................GATGTGGATGTCGATGTC.........................................................................................................................................................................................................................................................................................................................1880.383300000
droAna3
AGCCAT--AAAC--------------------------------------------------------------------------------------------------------------------------------GAGA-------------------------------------CTCTCCTCGGCGCAATT----T-CTTAATTTCAATTT--------------------------------------------------------------------------------------------------------------------------------------------------ATGTATTTCATTTTTCTCAAACTTTTTTATCTTTC--------------------------------------------------------------------------------------GG-------AT----GCAA------A-GCCACAG------GCACAG----GCACTGG----CACTCACACGCACGCACGCACACGG-----------CACAC------------CGACACG------GGGACAC-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GAAAACC----------------------------------------------------------------------------------------------------------AAGAAGGCCAAGA--ACAA-------GCCG-----------------------------------------------------------------------------------------------------------------------AA----GAA----------------------CG----------------AACGAACCGACAGTGCTCCG----T--CT--------------------------------------------------------CGCTGCTT---------------CCAGAACTCCAATAA---------------------TTCCAGTTT---------C--------CTC--TTCCAGTCT-------------------TC--------AGCCAA----AGACACG----CTCACACACACACACACACACACAAC------------AGA------------GTGCAGA------TACAGAT-SizeHit CountTotal NormTotal
No Reads
droKik1
AAGCAT--T--------------------------------------------------------------------------------------------------------GAAAACATTGATA--ACAA-------AACA---------------------------------------------TATTTTAC-----------------------------------------------------------------C----------------------------------------------------------------------------TTTAAT-----------------------------------------------------------------------------------------------------------------------------GCGT---------------------ACACATA----------CACAAC--------ACACAC----ACACACA----CACACACACACACACACACACACACA------------CAC------------ACACACA------CACACAC-SizeHit CountTotal NormTotal
No Reads
droFic1
CCTGCT----------C----CTTCCGCACTCCGCTTTCCGCCAAC----------------------AACAACAAGTGCATGGGGCGAGTTG------GACCTCGACGCGTAAAAAATGCAAATC--CCAA-------GTCA---------------------------------------------AAGCTTAGCG----C-CGCAGCCCCCGT-------------------------------------ACGTGGCA-AC----CTG----------------------GC----------------AACATACGTGCCA-------CCACCCCCTTTACA----------------------------------------------------------------------------------------------CGCCCCC----------------------------------------------------------------------------------------------------------CCTACACACACACACACACA------------CAC------------CCACACA------AGCACA--SizeHit CountTotal NormTotal
No Reads
droEle1
CGACAAC-----------------------------------------------------------------------------------------------------------GAACTGCGAGTT--ACAA-------ATCA----------------------------------------------------------------------------------------------------------------------------------AAAAGGAAATAGCCTAGAGATAAATAAATACCCCAGAA-AC---CTCTCAGAGAAAAG----CTCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACACAC----ACACAC----ACACACA----CACACACACACACACACACACACACA------------CAC------------ACACACA------CACACAC-SizeHit CountTotal NormTotal
No Reads
droRho1
AAGAAA--------------------------------------------------------------AACTATAAATGCCTAA----------------------ATCAAGA-AAAATAAGTA--AAACAA-------GAAAA-------------------------------------AACGCTATGGTCGAGTG----C-CTCGACTATTAGATACCCGTTACTCA----------------------------------------------------------------------------------GTTA---------------------------AA-CAATTGCAACTGT---------------------------------GTAC---------------------------A---------------------------------------------------------------------------------------------------------------------A----TGTAAATACATACATATGTATATGCT------------TAC------------ATACATA------CACACAT-SizeHit CountTotal NormTotal
No Reads
droBia1
CGTGCG----------T---------------------------GTATGTGCAATTGTTATTATTAACA-------------------------------------ACAACAA-CAAACAAACA--AAATAGAGAAGAAATAG----------------------------------------CGTTACTT-----------------------------------------------------------------------------------------------------------------------------------------------TTCTTTTAACC----------------------------------------------------------------------------------------------GGATTCCGG----TAC----------------------------------------------------------TTA----------CACACACCCAC----ACACACA--------CAGACACAAACA--AA------------CACACACACACACCCACTCC-G------CTCACACCSizeHit CountTotal NormTotal
No Reads
droTak1
AAC-------------------------------------------------------------------------------------------------------------------------------AA-------GAGAG-------------------------------------AACGCTATAGTCGGGTTCGTGT-CCCGACTATCTAATACCCGTCACTCG----------------------------------------------------------------------------------GCTA---------------------------AAGGAAGTGCGAGGGTGAAGGA------------------------------------TAT---------------ATACAATTTTTTTGATTGCGTATAACTTTTTAAGAC----------------------------------------------------------AGA--CAG----ACAGAC----AGACAGA----CAGACAGACAGACAGACAGACAGACA------------GAC------------AGACAGA------CAGACAG-SizeHit CountTotal NormTotal
No Reads
droEug1
CTTCAA--------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTC-----------------------------CTAAGTTTT-----CTCTATATATA---GCAT-----ACATATT-GGCGCTCTG-GCCAT--------ACACGC----ACACACA----CACACACAGATATACACACACATGCATGCAAACAAACACAC------------TTAGACGCATTTTCCCACAC-SizeHit CountTotal NormTotal
No Reads
dm3
TTTCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC--------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------TTCGTTGGCGCTTAGC---AG-------AGGCAAG---------A-ACC----------ACACAC----ACACACA----CACACACACACACACACACACACACA------------CAC------------ACACACA------AACACAC-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------TTCGTTGGCGCTTAGC---AG-------AGGCAAG---------A-............................................................................................................27111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000010020000000000000000000000010300000
..........................................................................................................................................................................................................................................................TCC--------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------TTCGTTGGCGCTTAGC---AG-------A.............................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010002110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
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.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAG---------A-ACC----------ACACAC----ACACACA----CACACACACACACA............................................................3514.0040000000000000000000000000000000000000000000000000000000003010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGC---AG-------AGGCAAG---------A-ACC----------ACACAC----A....................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGGCGCTTAGC---AG-------AGGCAAG---------A-............................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000100000
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................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAG---------A-ACC----------ACACAC----ACACACA----CACACACACACAC.............................................................3511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGCTTAGC---AG-------AGGCAAG---------..............................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTAGC---AG-------AGGCAAG---------A-ACC----------ACACAC----A....................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTAGC---AG-------AGGCAAG---------A-ACC----------ACA............................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACACACACACACA------------CAC------------AC...................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACACACACACACACACACA------------CA..................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACA----CACACACACACACACACACAC.....................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACA----CACACACACACACACACAC.......................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAC----ACACACA----CACACACAC.................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
droSim2
GAAGCG-TTGGCAAT------------------------------------------------------------------------------------------------------ATGG------------------------------------------------------------------ATATTCGGGTT---------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------TGC-TTTGACATTGATG---AG-------ACAGGAC-AA------G-GCTAG--------ACACAC----ACACACA----CACACACAGACACACACACACACACA------------GAC------------ACACACA------CACACAC-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---AG-------ACAGGAC-AA------G-GCTAG--------ACACAC----A....................................................................................2611.00100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAG--------ACACAC----ACACACA----CACACACAGA................................................................2620.50100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC----ACACACA----CACACACA..................................................................18200.05100000001000000000
droSec2
AAGGAA------------------------------------------------------------------------------------------------------------------AGCA--CAACAA-------GAACG-------------------------------------AAAGCTATAGTTGAGTT----T-CTCGACTATCAGATACCCGTTACTCAGCG-----------------------------------------------------------------------------------------------------------------------------A---------------------------------GTAC---------------------------A-------ACA---------------------TTCAAACTTTT-----TTTGGCATATC---GA-------AA----G--------------------------------------------------------------------------------------------------AAATTGG------CACACA--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................T-CTCGACTATCAGATACCCGT............................................................................................................................................................................................................................................................................................................................................................................................................21140.0710100
droYak3
GGACCA-GCAGCAAT--------------------------------------------------------------------------------------------------------------G--C------------------------------------------------------TGCTACATTTGCGTC---------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGA---------GCTGC---------------------CACTTA----------GTAAAA--------ACTCAC----TCACACT----CCCACGCACACACACACACACACACA------------GAT------------ACACATA------CACACAC-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CAGCAGC-----------------------------------------------------------------------------------------------------------AAGTTGCTACCG--AAAA-------CCAAA-------------------------------------CGATCTTTGGTCACCTT----C-TGGAATTCTTGTT-CGCCTGGTAATTCAAACCGAAAGATCTTTCAAT-----------------------------------------------------------TTGCCA---------------------------AAAAAATTAACAT----------------------------------------TTTGCAGGCAAAATTGTGAGATTACACA-----------------------------------------------------------------------------------------------------ACATAC----ATATGTA----CATACATATGTACATACATACATACA------------TAC------------ATACATA------CATACAT-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................AATTAACAT----------------------------------------TTTGCAGGCAAA....................................................................................................................................................................................................................21200.0510000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATACATACA------------TAC------------ATACATA------CAT.....25200.0511000000

Generated: 05/18/2015 at 02:48 AM