ID:

dmo_2512

 Coordinate:

scaffold_6680:16833607-16833693 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.0 -3.7 -3.5

Flybase annnotation

exon [dmoj_GLEANR_13531:7]; CDS [Dmoj\GI13619-cds]; CDS [Dmoj\GI13619-cds]; exon [dmoj_GLEANR_13531:8]; intron [Dmoj\GI13619-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+
mature
star
  1. scaffold_6291:1301-1325 -
  2. scaffold_6496:8590917-8590941 -
  3. scaffold_6496:18398416-18398440 +
  4. scaffold_6496:19027201-19027225 +
  5. scaffold_6496:19027246-19027270 +
  6. scaffold_6496:24396711-24396735 +
  7. scaffold_6500:21871375-21871399 +
  8. scaffold_6518:1449-1473 +
  9. scaffold_6540:22077244-22077268 -
  10. scaffold_6680:2861032-2861056 -
  11. scaffold_6680:6034095-6034119 +
  12. scaffold_6680:13911444-13911468 -
  13. dmo_2512  scaffold_6680:16833668-16833692 +
  14. scaffold_6680:17714285-17714309 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------##################################################
AATCGCAAAGTGATAAACAAAACAATCAGCAGCAGCAGCAGCAGTTTGTTGTCAAAAGCATTTTGACCAGAAACAACAATCAACAACAACAACAGCAGCCACAACAACAGCAGCAGCAGCAGCAACATCAGCAGCAGCAACAACAACAATCAACACCCACAACTGGCATGGATTTAATTGCCATGCT
**************************************************************************....................((.((..........((.((....)).)).......)).)).*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
....................................................................................................................................................ATCAACACCCACAACTGG..................... 18 0 1 1.00 1 1 0 0 0
..........................................................................AACAATCAACAACAACAACAGCAGCCAC..................................................................................... 28 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................TCAACACCCACAACTGGCATGGATT............. 25 0 1 1.00 1 1 0 0 0
.........................................................................................CAACAGCAGCCACAACAACAGCA........................................................................... 23 0 2 0.50 1 0 1 0 0
.................................................................................AACAACAACAACAGCAGCCAC..................................................................................... 21 0 13 0.15 2 1 0 1 0
...............................................................................................................AGCAGCAGCAGCAACATCAGCAGCA................................................... 25 0 15 0.07 1 1 0 0 0
...............................................................................................................AGCAGCAGCAGCAACATCAGCAGC.................................................... 24 0 16 0.06 1 0 0 1 0
.............................................................................................................GCAGCAGCAGCAGCAACATCAGCA...................................................... 24 0 17 0.06 1 1 0 0 0
.........................................................................................................................GCAACATCAGCAGCAGCAAC.............................................. 20 0 18 0.06 1 0 1 0 0
....................................................................................................ACAACAACAGCAGCAGCAGCAGC................................................................ 23 0 20 0.05 1 0 1 0 0
..............................................................................................................................ATCAGCAGCAGCAACAACAACA....................................... 22 0 20 0.05 1 0 1 0 0
................................................................................CAACAACAACAACAGCAGCCA...................................................................................... 21 0 20 0.05 1 1 0 0 0
...................................................................................................................GCAGCAGCAACATCAGCAGC.................................................... 20 0 20 0.05 1 1 0 0 0
........................................GCAGTGTGTTGTCCAAGGC................................................................................................................................ 19 3 20 0.05 1 0 0 1 0
.............................................................................................................................CATCAGCAGCAGCAACAACA.......................................... 20 0 20 0.05 1 1 0 0 0
..................................................................................................CCACAACAACAGCAGCAGCA..................................................................... 20 0 20 0.05 1 0 0 0 1
.......................................................................................................ACAACAGCAGCAGCAGCAGCAACA............................................................ 24 0 20 0.05 1 0 0 1 0
...........................................................................................................................AACATCAGCAGCAGCAACA............................................. 19 0 20 0.05 1 1 0 0 0
.........................................................................................................AACAGCAGCAGCAGCAGCAA.............................................................. 20 0 20 0.05 1 0 0 0 1
..........................................................................................................ACAGCAGCAGCAGCAGCAACATC.......................................................... 23 0 20 0.05 1 0 0 0 1
.......................................................................................................ACAACAGCAGCAGCAGCAGCAA.............................................................. 22 0 20 0.05 1 0 0 0 1

Anti-sense strand reads

TTAGCGTTTCACTATTTGTTTTGTTAGTCGTCGTCGTCGTCGTCAAACAACAGTTTTCGTAAAACTGGTCTTTGTTGTTAGTTGTTGTTGTTGTCGTCGGTGTTGTTGTCGTCGTCGTCGTCGTTGTAGTCGTCGTCGTTGTTGTTGTTAGTTGTGGGTGTTGACCGTACCTAAATTAACGGTACGA
***************************************************....................((.((..........((.((....)).)).......)).)).************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
.....................................................TTTTCGTAAAAATGGTCTT................................................................................................................... 19 1 1 1.00 1 1 0
..............TTTGTGTTGTTAGTCGTCGTCGTCGT................................................................................................................................................... 26 1 1 1.00 1 0 1
.................GTTTTGTTACTGGTCGTCGT...................................................................................................................................................... 20 2 4 0.25 1 1 0
....................................................TTTTTCGTAAAAATGGTCTT................................................................................................................... 20 2 4 0.25 1 1 0
............................................................................................................................................GTTGTTGTTTGTTGTGGG............................. 18 1 8 0.13 1 1 0
..................................................................GGTCTTGGTTGTGGGTTGTTGT................................................................................................... 22 3 15 0.07 1 0 1
.....................................................TTTTCGTAAAAATGGTCGT................................................................................................................... 19 2 15 0.07 1 1 0
..........................................................................................................TGTCGTCGTCGTCGTCGTTGTA........................................................... 22 0 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6680:16833557-16833743 + dmo_2512 AATCG-CAAAGTGATAAACAA------AACA---------------------------------------A---TCAG------CAGCAGCAGCAGCAGT----------T----T-------GTTGTCAAA---AG---CATTTT---G---------ACC---AGAAACAACAA--TCAACAACAACA---------------ACAGCAGCC---ACAA---CAAC---AGCA---------------------GCAGCAGCAGCAACA---------------TC------------------AGCAGCAGCAACAACAACAA--TCAACA---C----------------CCACAACTGGCATGGA-----------TT-TA---ATTGCC----------------------------ATGCT
droVir3 scaffold_12928:4749488-4749654 - AAAG--C--------------G-----------ATA---------CAACAACAA---------CAACAACA---ACAA------CAACAGCAAACACATT------A-ACA----GCAAC------------A---------------TCAGCAGCAACA------------------------ACATTA---------------GCAGCAGCA---GCAA---CAGC---AACA---------------------GCAACAACAGCAATT---------------TT------------------AACAACAGCAACAACGACAACAACAACA---AC-----------TG---------------CGCTTCCATTAAAAGA----------CA----------------------------ACTCG
droGri2 scaffold_15110:21314299-21314476 - AATCA-CAAAGTGATAAGCAA------AGCA---------------------------------------A---TCAA------CAGCAGCAGCAACAAC------A-GCT----G-------GTAGTCAAA---AG---CATTTT---G---------AAC---AAAAAG-----------TATAT------A------CAACAACAA---------CAA---CAGTTGCAGCA--------------GCA----GCAGCAGCAGCAACA---------------AC------------------AGCAGCGGCAACAA-----ACAACGCCA---AC-------------------AACTGGCATGAA-----------TT-TG---CTGGCC----------------------------ATGTT
droWil2 scf2_1100000003625:590-766 + AACAGC---------------A----------------ACAGCAACAG---CAGCAACAATTGCAGCAACA---ACAG------CAACAGCAGCAACAATGGCAGCA-A----------C------------A---------------------------ACAA---------------CAGCAACA------------------ACAACTGCA---GCAG---CAAC---AACA---------------------ACAGCAGCAACAACAACAGCAGCAGCA---AC------------------AACAGCATCAGCAA------CAGCAACAGCAGC-----------A--------------ACGAA-----------TG-CA---ACAGCA----------------------------ACAGC
dp5 XR_group6:6489961-6490151 + AATAGC---------------A----------------GCAGTGGCAG---CAAC------------A--A---TCAA------CAGCAGCAGCAGCAAC---AACA-ACA---A----C------------A---------------GCAGCAACAACAA------------------CAACAACAACA---------------GCAGCAGCA---ACAA---CAAC---AGCA---------------------GCAACAGCAGCAACA---------------AC------------------AGCAGCAGCAACAACAACAACAACAGCA---GC-----------A--------GCCGCCGCAAG-----------TT-CG---TA-CCT-ATGGAACGATGAAGGTGC-------CTTCGTC
droPer2 scaffold_13:40682-40858 + AACAGC---------------A----------------ACAACACCAA---CAG------------CATCA---TCAT------CATCAGCTACAACAGC------A-ACT----GCTGC------------T---------------CCAGCAACAACAACAAC---A------------GCAGCAACA---------------GCAACTGCA---GCAG---CAAC---AGCA---------------------GCAACAACAGCAATT---------------AC------------------AACAGCAGCAACAGCAACAGCAGCAACA---AC-------------------AATTGCTAATGC-----------CA-CA---ACAACA----------------------------ACAAT
droAna3 scaffold_12929:312288-312461 + CATCC-TGAGGTTGCAGACAG------AG----GCG---------CAG------------------CCAAG---GCAG------CAGCAGCAGCAGCAGTTGCAGCA-GCA---A----C------------A---------------CTTGCAACAGCAA---------------------CAGAT------G------CAGCAGCAG---------CAG---CAACTGCAGCA--------------ACA----GCAACAGCAACTGCA---------------AC------------------AGCAGCAGCAGCAACTGCAGCAACAGCA---AC-----------A------------------------------AC-CT---TCTCCC----------------------------ATGCT
droBip1 scf7180000395895:8389-8555 + AACGG----------------T-----------GCA---------CAA---C---------------AACA---ACAA------CAACAGCATCAACAAC---ATCA-ACA---A----C------------A---------------TCAGCAACA------------------------------------------------ACAAC---AACAACAT---CATC---ATCAAAGGGTTGCCAGCAGCAACCAGCAGCAGCTGCAACA---------------GC------------------AACAGCAACAACAACAACAACAACAGCA---GC-----------A---------------TGAT-----------AA-T-----------------------------GGTCCTGCCTCCCT
droKik1 scf7180000302685:196199-196384 + GATTT-TCAATTCATCAACAG------CA---------------GCAG---CAGCAACAACAACAGCATCTACAGCAG------CAGCAACAACAGCATTTA-----------------------------------------------C---------AGC---AGCAGCAACAA---CAGCATTT------A------CAGCAGCAG---------CAG---CATTTACAGCA--------------GCA----GCAACAACAGCATCT---------------AC------------------AGCAGCAGCAACAACAGCATTTACAGCA---GC-----------A--------------GC--------------AG-CA---GCAGCA----------------------------TTTAC
droFic1 scf7180000454050:640824-640989 - GCAG--C--------------A-----------GTG---------CAGCAGCAG---------CAGCAGCA---ACAG------CAGCAGCAGCAACATC------T-AC-------------------------------------------------AGC---AGCAGCTGCAACAGCAACAACAACA---------------GCAGCAGCA---GCAA---CAAC---AACA---------------------GCAGCAACAACAACA---------------AC------------------AGCAGCAGCAACAACAACT--AGCAGCA---GT-----------------------GACGAGGA-----------AA-CA---CTCGAA----------------------------ACGCT
droEle1 scf7180000490214:925848-926030 - GCTGGC---------------AGTTTTAGCGATCTGCA-GC---TGAA---------------CAACATCA---CCAG------CATCAGCAATCACAAT------A-GCA----AGATC------------G---------------CGAGCAACCAAAACAAC-----------------CGACGACA---------------GCAGCAGCA---ACGG---CAAC---CACA---------------------GCAGCAACAGCAACA---------------GC------------------AGCAGCAGCAGCAACACCAACAGCAGCG---AC-----------A--------GGTGGC-------------------CTCTTTAAATC----------------------------GCCAT
droRho1 scf7180000778995:15171-15337 + CAGCG-T--------------------------------CAGGTGCAG---C---------------AGCA---ACAAGAG---CACCAGCAGCAGCAGC------A-ACA----------GC---------AGCAG------------CAGCAACAACAACAAC---A------------GCAGGA------------------ACAGCAGCA---GCAA---CAAC---AACA---------------------GCAGCAGCAGCAACA---------------AC------------------AGCAGCAGCAGCAACAACAACAGCAGCAGCAAC-------------------TAGT-------------------AT-CA---GCGACA----------------------------ACACT
droBia1 scf7180000302193:4351464-4351632 + CATCC-CTCAATA---GTCTA------AGCC---------------AG---C------------------------AG------CAACAGCAGCAGC-----------------------------------AGCAG------------CAGCAACAACAACAG------------------CAGCAGCA---------------GCAGC---AGCAACAC---CAGC---AGCA---------------------ACAGCAGCAGCAACA---------------TC------------------AGCAGCAGC---AG---------CAGCA---GCACACACCGAACACACCATCCTCCAGCGCGGG-----------AT-CA---TCGGCC----------------------------ACGAT
droTak1 scf7180000414450:79782-79969 + AATTG-CCAAATCATCACCAT------CATC---------------------------------------A---TCAT------CATCACCACCACCAT----------------C-------ACAGTCAAC---TA---CAACTC---CAACAACAACAGCAAC---A---AC-A--GCAGCAACA---------------CCAACAA---------CAG---CCGC---TACA---------------------CCAACAACAGCAACT---------------GCAACACCAGCAGCAACAACACCAACAAC---AA------CACTATCAGCAAC-----------A---------------TGGC-----------AT-TC---AACAAC----------------------------AGGCT
droEug1 scf7180000409672:567000-567176 - CAAAT------ACATAAACAA--------------------------A---CAG------------CA--T---TCGGCAACAGCCACTACGAGCATGAT------GCACC----ACAGCAAC---------A---GCAACAGCAATACAAC------------------------------CAACAACAACAACATCAACACTATCATC---AGCAACAC---CATC---A------------------------GCAACA------------------------AA------------------AACAACAACAACAA------CAGCAACA-------------------------ACTGCAATCGA----------GTGCCA---CTCGCC----------------------------ATGTC
dm3 chr3L:14020747-14020925 - AATTGC---------------A----------------GCACCAACAC---CAGA---------------T---GCAG------CAACAACAGCAGCAGC------A-GCA----------GC---------AGCAG------------CAACAACAACAACAAC---A------------ACAACA------------------ACAACAACA---ACAA---CAAC---AACA---------------------ACAACAACAGCAGCA---------------GC------------------AGCAGCAGCAGCAACATCAACAGC--------------------AG---------------ATTATCCAGCAACAGG-CA---ACGGCTA---------C--TTCTGC-------CCTATCT
droSim2 3l:8236987-8237140 - GCAG-----------------------------------AATATGCAT------------------CACCA---TCAA------CATCAGCAGCAACACATGCAGCA-G----------C------------AGCAG------------CAACAACAACAACATC---A---------------GCAGCA---------------GCAGCAGCA---ACAA---CAAC---AACA---------------------TCAGCAGCAGCAACA---------------CC------------------AACAGCAGCAGCAACAACAACAGCATCC---A------------------ACCATTGGAATG------------------------------------------------------------
droSec2 scaffold_34:421792-421970 + GGTG-----------------------------------------CAA------------------CAGCA---ACAGCAG---CATCAGCAGCAGCAGC------A-GCA----------GC---------AACAG------------CAACAACAACAACAAC---A------------GCAACA------------------ACAACAACA---ACAA---CAAC---AACA---------------------ACAGGTGCAGCACCAACAGCAGCAGCAAAAGC------------------TTCAGTTGCAGCAACAACAGCAGCATCA---AC-------------------------------------------A-CA---ACTCGA------ACAATTTGATTGTC---------GGCC
droYak3 3L:14107835-14108041 - ATCG--AAAAGCAGCGAAC-T------CAGA---------------AG---CAGCAGGCCACGCAGCAGCA---ACAA------ATTCAGCAGCAGCAATTGCAGCA-CCAACAA----C------------A---------------GATGCAACAACA------------------------ACAACA---------------GCAGCAGCA---ACAA---CAAC---AACA---------------------GCAGCAGCAACAACA---------------AC------------------AGCAGCAGCAGCAACAACAACAGCAGCA---GC-----------AG---------------ATCATCCAGCAACAGG-CA---ACTGCTA---------C--TTCTGC-------CCTTTCT
droEre2 scaffold_4784:3586559-3586732 + ACCAGC---------------A----------------GCAGCATCAG---CAGCAGCAGCAGCAGCATCA---ACAG------CAGCAGCAGCAGCAAC------A-G----------------------------------------CAGC------AACAGC---A------------GCAACA------------------GCAGCAGCA---GCAACAACAGC---AACA---------------------GCAGCAGCAGCAACAGCAGCAGCATCA---AC------------------AGCAACAGCAGCAA------CAGCAACAGCAGC-----------A--------------GC--------------AG-TT---GCAGCC----------------------------ACAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AATCG-CAAAGTGATAAACAA------AACA---------------------------------------A---TCAG------CAGCAGCAGCAGCAGT----------T----T-------GTTGTCAAA---AG---CATTTT---G---------ACC---AGAAACAACAA--TCAACAACAACA---------------ACAGCAGCC---ACAA---CAAC---AGCA---------------------GCAGCAGCAGCAACA---------------TC------------------AGCAGCAGCAACAACAACAA--TCAACA---C----------------CCACAACTGGCATGGA-----------TT-TA---ATTGCC----------------------------ATGCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................A--TCAACA---C----------------CCACAACTGG................................................................1811.001100000
...........................................................................................................................................................................AACAA--TCAACAACAACA---------------ACAGCAGCC---AC.................................................................................................................................................................................................................2811.001100000
........................................................................................................................................................................................................................................................................................................................................TCAACA---C----------------CCACAACTGGCATGGA-----------TT-............................................2511.001100000
............................................................................................................................................................................................CA---------------ACAGCAGCC---ACAA---CAAC---AGCA---------------------............................................................................................................................................................................2320.501000010
....................................................................................................................................................................................AACAACAACA---------------ACAGCAGCC---AC.................................................................................................................................................................................................................21130.152100001
..........................................................................................................................................................................................................................................A---------------------GCAGCAGCAGCAACA---------------TC------------------AGCAGCA...................................................................................................................25150.071100000
..........................................................................................................................................................................................................................................A---------------------GCAGCAGCAGCAACA---------------TC------------------AGCAGC....................................................................................................................24160.061000001
........................................................................................................................................................................................................................................GCA---------------------GCAGCAGCAGCAACA---------------TC------------------AGCA......................................................................................................................24170.061100000
.........................................................................................................................................................................................................................................................................GCAACA---------------TC------------------AGCAGCAGCAAC..............................................................................................................20180.061000010
.........................................................................................................................................................................................................................ACAA---CAAC---AGCA---------------------GCAGCAGCAGC.................................................................................................................................................................23200.051000010
..............................................................................................................................................................................................................................................................................A---------------TC------------------AGCAGCAGCAACAACAACA.......................................................................................................22200.051000010
...................................................................................................................................................................................CAACAACAACA---------------ACAGCAGCC---A..................................................................................................................................................................................................................21200.051100000
...................................................................................................................................................................................................................................................................GCAGCAGCAACA---------------TC------------------AGCAGC....................................................................................................................20200.051100000
.............................................................................................................................................................................................................................................................................CA---------------TC------------------AGCAGCAGCAACAACA..........................................................................................................20200.051100000
....................................................................................................................................................................................................................CC---ACAA---CAAC---AGCA---------------------GCAGCA......................................................................................................................................................................20200.051010000
............................................................................................................................................................................................................................A---CAAC---AGCA---------------------GCAGCAGCAGCAACA---------------..............................................................................................................................................24200.051000001
...........................................................................................................................................................................................................................................................................AACA---------------TC------------------AGCAGCAGCAACA.............................................................................................................19200.051100000
.................................................................................................................................................................................................................................AAC---AGCA---------------------GCAGCAGCAGCAA...............................................................................................................................................................20200.051010000
..................................................................................................................................................................................................................................AC---AGCA---------------------GCAGCAGCAGCAACA---------------TC------------------..........................................................................................................................23200.051010000
............................................................................................................................................................................................................................A---CAAC---AGCA---------------------GCAGCAGCAGCAA...............................................................................................................................................................22200.051010000
droVir3
AAAG--C--------------G-----------ATA---------CAACAACAA---------CAACAACA---ACAA------CAACAGCAAACACATT------A-ACA----GCAAC------------A---------------TCAGCAGCAACA------------------------ACATTA---------------GCAGCAGCA---GCAA---CAGC---AACA---------------------GCAACAACAGCAATT---------------TT------------------AACAACAGCAACAACGACAACAACAACA---AC-----------TG---------------CGCTTCCATTAAAAGA----------CA----------------------------ACTCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................ATA---------CAACAACAA---------CAACAACA---ACA...............................................................................................................................................................................................................................................................................................................................................................23200.102002000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................T------------------AACAACAGCAACAACGACC.......................................................................................................20130.081000100000000000000000000000000000000000000000000000000000000000
................................................................AACAACA---ACAA------CAACAGCAAACA............................................................................................................................................................................................................................................................................................................................................23140.071000000000000000000000000000000000000100000000000000000000000000
.................................................................ACAACA---ACAA------CAACAGCAAACA............................................................................................................................................................................................................................................................................................................................................22140.071000000000000000000010000000000000000000000000000000000000000000
..............................................................................................................A----GCAAC------------A---------------TCAGCAGCAAC.............................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................................................................................CAGCA---GCAA---CAGC---AACA---------------------GCAAC.......................................................................................................................................................................22200.051000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................GCA---GCAA---CAGC---AACA---------------------GCAACAAC....................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................CA---GCAA---CAGC---AACA---------------------GCAACAACAGC.................................................................................................................................................................25200.051000000000000000000000000000000000000000000000000000000000010000
.............................................................................................................................................................................................................GCAGCAGCA---GCAA---CAGC---AACA---------------------GC..........................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................GCAA---CAGC---AACA---------------------GCAACAACAGC.................................................................................................................................................................23200.051000000000000000000000100000000000000000000000000000000000000000
.................................................AACAA---------CAACAACA---ACAA------CAACAGCAAA..............................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................................................................................................GCA---GCAA---CAGC---AACA---------------------GCAACAACA...................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................GCAGCA---GCAA---CAGC---AACA---------------------GC..........................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................A---------------GCAGCAGCA---GCAA---CAGC---AACA---------------------............................................................................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
droGri2
AATCA-CAAAGTGATAAGCAA------AGCA---------------------------------------A---TCAA------CAGCAGCAGCAACAAC------A-GCT----G-------GTAGTCAAA---AG---CATTTT---G---------AAC---AAAAAG-----------TATAT------A------CAACAACAA---------CAA---CAGTTGCAGCA--------------GCA----GCAGCAGCAGCAACA---------------AC------------------AGCAGCGGCAACAA-----ACAACGCCA---AC-------------------AACTGGCATGAA-----------TT-TG---CTGGCC----------------------------ATGTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................GCATGAA-----------TT-TG---CTGGCC----------------------------ATGTT2211.00110
................................................................................................................................................................................................................................................................GCAGCAGCAGCAACA---------------AC------------------AGCAGCGGCA................................................................................................................2711.00110
..............................................................................................................................................................................................................................................................................................AC------------------AGCAGCGGCAACAA-----ACAACG.................................................................................................2211.00110
.....................................................................................................................................................................................................................................................................AGCAGCAACA---------------AC------------------AGCAGCG...................................................................................................................19170.06110
droWil2
AACAGC---------------A----------------ACAGCAACAG---CAGCAACAATTGCAGCAACA---ACAG------CAACAGCAGCAACAATGGCAGCA-A----------C------------A---------------------------ACAA---------------CAGCAACA------------------ACAACTGCA---GCAG---CAAC---AACA---------------------ACAGCAGCAACAACAACAGCAGCAGCA---AC------------------AACAGCATCAGCAA------CAGCAACAGCAGC-----------A--------------ACGAA-----------TG-CA---ACAGCA----------------------------ACAGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................AACAATGGCAGCA-A----------C------------A---------------------------ACAA---------------CAG......................................................................................................................................................................................................................................................23200.7014014000
...................................................................AACA---ACAG------CAACAGCAGCAACA..........................................................................................................................................................................................................................................................................................................................................22200.25505000
..........................................................................................................A-A----------C------------A---------------------------ACAA---------------CAGCAACA------------------ACAACTG........................................................................................................................................................................................................................23200.20404000
.....................................................................................................................................................................................................................A---GCAG---CAAC---AACA---------------------ACAGCA......................................................................................................................................................................19200.20400040
........................................................................................................................................................................................................................................ACA---------------------ACAGCAGCAACAACA.............................................................................................................................................................18200.15300030
................................................................AGCAACA---ACAG------CAACAGCAGC..............................................................................................................................................................................................................................................................................................................................................21200.15302010
.......................................................AACAATTGCAGCAACA---ACAG------CA......................................................................................................................................................................................................................................................................................................................................................22200.15301020
................................................................................................................................................................................................................................CAAC---AACA---------------------ACAGCAGCAAC.................................................................................................................................................................19200.15300030
................................................................................................................................................................................................................................CAAC---AACA---------------------ACAGCAGCAACA................................................................................................................................................................20200.15300030
..............................................................................................AACAATGGCAGCA-A----------C------------A---------------------------ACAA---------------CAGC.....................................................................................................................................................................................................................................................24200.15302010
.........................................................................................................................................................................................................................................................................................................................TCAGCAA------CAGCAACAGCAGC-----------A--------------ACGAA-----------...............................................2690.11100010
.......................................................................................................................................................................................................................................................................CAACAACAACAGCAGCAGCA---AC------------------..........................................................................................................................22200.10200020
......................................................................A---ACAG------CAACAGCAGCAACAATGGC.....................................................................................................................................................................................................................................................................................................................................24200.10202000
......................................................................A---ACAG------CAACAGCAGCAACAATGG......................................................................................................................................................................................................................................................................................................................................23200.10202000
.......................................................................................................AGCA-A----------C------------A---------------------------ACAA---------------CAGCAACA------------------ACAACTG........................................................................................................................................................................................................................26200.10202000
...................................................................AACA---ACAG------CAACAGCAGCAAC...........................................................................................................................................................................................................................................................................................................................................21200.10200020
...........................................................................................................................................................................................................................................................................................................................AGCAA------CAGCAACAGCAGC-----------A--------------ACG............................................................22110.09100010
...............................................................................................................................................................................................................................................................................................C------------------AACAGCATCAGCAA------CAGCAACAGCAG..........................................................................................27120.08100010
.............................................................................................................................................................................................................................................................................CAACAGCAGCAGCA---AC------------------AACAGCATCAG...............................................................................................................27120.08100010
.........................................................................................................................................................................................................................................................................................CA---AC------------------AACAGCATCAGCAA------CAGCAACAG.............................................................................................27120.08101000
.........................................................................................................................................................................................................................................................................................CA---AC------------------AACAGCATCAGCAA------CAGC..................................................................................................22140.07100010
..................................................................................................................................................................................................................TGCA---GCAG---CAAC---AACA---------------------ACAGCAGCAACA................................................................................................................................................................28140.07100010
..........................................................................................................................................................................................A------------------ACAACTGCA---GCAG---CAAC---AACA---------------------ACA.........................................................................................................................................................................25150.07101000
...AGC---------------A----------------ACAGCAACAG---CAGCAACAATT..............................................................................................................................................................................................................................................................................................................................................................................25160.06100010
...............................................................................................................................................................................................................................................................................................C------------------AACAGCATCAGCAA------CAGC..................................................................................................19170.06100010
.....................................................................................................................................................................................................................................................................................................................AGCATCAGCAA------CAGCAACAGCAG..........................................................................................23170.06101000
........................................................................................................................................................................................................................................................................................................................ATCAGCAA------CAGCAACAGCAGC-----------A--------------AC.............................................................24190.05101000
..................................................................................................................................................................................................................................................................AGCAGCAACAACAACAGCAGCAGCA---A.............................................................................................................................................26200.05101000
.......................................................AACAATTGCAGCAACA---ACAG------C.......................................................................................................................................................................................................................................................................................................................................................21200.05101000
....................................................................................................................................................................................AGCAACA------------------ACAACTGCA---GCAG---CAA.........................................................................................................................................................................................................23200.05101000
...................................................................................................TGGCAGCA-A----------C------------A---------------------------ACAA---------------CAGCAACA------------------A..............................................................................................................................................................................................................................24200.05100010
.......................................................................................................................C------------A---------------------------ACAA---------------CAGCAACA------------------ACAACTGCA---GC.................................................................................................................................................................................................................25200.05101000
.....................................................................................................................................................................................................................................................................AGCAACAACAACAGCAGCAGCA---AC------------------A.........................................................................................................................25200.05100010
.................................................................................................AATGGCAGCA-A----------C------------A---------------------------ACAA---------------CAGCA....................................................................................................................................................................................................................................................22200.05101000
.......................................................AACAATTGCAGCAACA---ACAG------CAA.....................................................................................................................................................................................................................................................................................................................................................23200.05101000
..............................................................GCAGCAACA---ACAG------CAACAGCAG...............................................................................................................................................................................................................................................................................................................................................22200.05101000
..........................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCA---AC------------------AACAG.....................................................................................................................24200.05101000
...........................................................................................................................................................................................................................AG---CAAC---AACA---------------------ACAGCAGCAACAA...............................................................................................................................................................23200.05100010
........................................AGCAACAG---CAGCAACAATTG.............................................................................................................................................................................................................................................................................................................................................................................20200.05101000
................................................................................................................................................................................................................................................................ACAGCAGCAACAACAACAGCAG......................................................................................................................................................22200.05101000
.................................................................................................................................................................CAA---------------CAGCAACA------------------ACAACTGCA---G..................................................................................................................................................................................................................21200.05101000
.......................................................AACAATTGCAGCAACA---ACAG------CAAC....................................................................................................................................................................................................................................................................................................................................................24200.05101000
.ACAGC---------------A----------------ACAGCAACAG---CAGCA....................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
............................................................................................................................................................................................................................................................................ACAACAGCAGCAGCA---AC------------------AACA......................................................................................................................21200.05101000
....................................................................ACA---ACAG------CAACAGCAGCAACA..........................................................................................................................................................................................................................................................................................................................................21200.05100001
....................................................................................................................................A---------------------------ACAA---------------CAGCAACA------------------ACAACTGCA---G..................................................................................................................................................................................................................23200.05101000
.......................................................................................................................................................................................................................................AACA---------------------ACAGCAGCAACAACAAC...........................................................................................................................................................21200.05100010
........................................................................................................................................................................................................................................................................AACAACAACAGCAGCAGCA---A.............................................................................................................................................20200.05100100
..........................................................AATTGCAGCAACA---ACAG------CAACAGC.................................................................................................................................................................................................................................................................................................................................................24200.05101000
...................................................................................................................................................................................................................................................................GCAGCAACAACAACAGCAGCAGCA---..............................................................................................................................................24200.05100010
....................................................................................................GGCAGCA-A----------C------------A---------------------------ACAA---------------CAGCAAC..................................................................................................................................................................................................................................................21200.05101000
...................................................................................................................................................................A---------------CAGCAACA------------------ACAACTGCA---GCA................................................................................................................................................................................................................21200.05101000
...................................................................................................TGGCAGCA-A----------C------------A---------------------------ACAA---------------CAGCAACA------------------ACAAC..........................................................................................................................................................................................................................28200.05101000
.................................................................................................AATGGCAGCA-A----------C------------A---------------------------ACAA---------------CAGCAACA------------------...............................................................................................................................................................................................................................25200.05101000
....................................................................................................GGCAGCA-A----------C------------A---------------------------ACAA---------------CAGCAACA------------------A..............................................................................................................................................................................................................................23200.05101000
.............................................................................................CAACAATGGCAGCA-A----------C------------A---------------------------ACAA---------------CAGC.....................................................................................................................................................................................................................................................25200.05101000
............................................................TTGCAGCAACA---ACAG------CAACAGCAGC..............................................................................................................................................................................................................................................................................................................................................25200.05101000
.................................................................................................................................................................................................................................AAC---AACA---------------------ACAGCAGCAACAA...............................................................................................................................................................20200.05100010
.......................................................................................................................................................................................AACA------------------ACAACTGCA---GCAG---CAAC---A....................................................................................................................................................................................................22200.05101000
..............................................................GCAGCAACA---ACAG------CAACAGCAGCA.............................................................................................................................................................................................................................................................................................................................................24200.05100010
................................................................................................................................................................................................................................CAAC---AACA---------------------ACAGCAGCAACAACAACA..........................................................................................................................................................26200.05100010
.............................................................................................CAACAATGGCAGCA-A----------C------------A---------------------------ACAA---------------CAG......................................................................................................................................................................................................................................................24200.05100010
............................................................TTGCAGCAACA---ACAG------CAACAGCAG...............................................................................................................................................................................................................................................................................................................................................24200.05100010
......................................................................................................................................................................................................................................................................GCAACAACAACAGCAGCAGCA---AC------------------A.........................................................................................................................24200.05100010
.................................................................................................................................................................................................................................AAC---AACA---------------------ACAGCAGCAACAACAACAG.........................................................................................................................................................26200.05100010
......................................................................................................................................................................................................................................................................GCAACAACAACAGCAGCAGCA---..............................................................................................................................................21200.05101000
........................................................................................AGCAGCAACAATGGCAGCA-A----------C------------A---------------------------ACA.........................................................................................................................................................................................................................................................................25200.05101000
...............................................................................................ACAATGGCAGCA-A----------C------------A---------------------------ACAA---------------CAGCA....................................................................................................................................................................................................................................................24200.05101000
................................................................AGCAACA---ACAG------CAACAGCAGCA.............................................................................................................................................................................................................................................................................................................................................22200.05101000
.............................................................TGCAGCAACA---ACAG------CAACAGCAGC..............................................................................................................................................................................................................................................................................................................................................24200.05101000
.....................................................................CA---ACAG------CAACAGCAGCAACAATGGC.....................................................................................................................................................................................................................................................................................................................................25200.05101000
........................................................................................................................................................................................................................................................................................................................ATCAGCAA------CAGCAACAGCAGC-----------..............................................................................21200.05101000
..................................................................................................................................................................AA---------------CAGCAACA------------------ACAACTGCA---GCAG---C...........................................................................................................................................................................................................24200.05101000
............................................................................AG------CAACAGCAGCAACAATGG......................................................................................................................................................................................................................................................................................................................................20200.05101000
.......................................................................................................................................................................................................................................................................CAACAACAACAGCAGCAGCA---AC------------------A.........................................................................................................................23200.05100010
..................................................................................................................................................................AA---------------CAGCAACA------------------ACAACTGCA---GCAG---CAAC---.....................................................................................................................................................................................................27200.05101000
..........................................................................................................................................................................................................................................A---------------------ACAGCAGCAACAACAACAGCA.......................................................................................................................................................22200.05100001
....................................................................ACA---ACAG------CAACAGCAGCAACAATGG......................................................................................................................................................................................................................................................................................................................................25200.05101000
....................................................................................................................................A---------------------------ACAA---------------CAGCAACA------------------ACAACTGCA---GCA................................................................................................................................................................................................................25200.05100010
.......................................................................................................AGCA-A----------C------------A---------------------------ACAA---------------CAGCAACA------------------ACAACTGCA---G..................................................................................................................................................................................................................29200.05101000
....................................................................................................................................................................................AGCAACA------------------ACAACTGCA---GCAG---CAAC---A....................................................................................................................................................................................................25200.05100010
..............................................................................................AACAATGGCAGCA-A----------C------------A---------------------------ACAA---------------CAGCA....................................................................................................................................................................................................................................................25200.05100010
...................................................................AACA---ACAG------CAACAGCAGCAACAATGGC.....................................................................................................................................................................................................................................................................................................................................27200.05101000
......................................................CAACAATTGCAGCAACA---ACAG------CAA.....................................................................................................................................................................................................................................................................................................................................................24200.05100010
..............................................................................................................................................................................................................................................................................AACAGCAGCAGCA---AC------------------AACAGCA...................................................................................................................22200.05101000
...............................................................................................ACAATGGCAGCA-A----------C------------A---------------------------ACAA---------------CAG......................................................................................................................................................................................................................................................22200.05101000
...................................................................................................................................................................................................................................C---AACA---------------------ACAGCAGCAACAACAACA..........................................................................................................................................................23200.05100001
dp5
AATAGC---------------A----------------GCAGTGGCAG---CAAC------------A--A---TCAA------CAGCAGCAGCAGCAAC---AACA-ACA---A----C------------A---------------GCAGCAACAACAA------------------CAACAACAACA---------------GCAGCAGCA---ACAA---CAAC---AGCA---------------------GCAACAGCAGCAACA---------------AC------------------AGCAGCAGCAACAACAACAACAACAGCA---GC-----------A--------GCCGCCGCAAG-----------TT-CG---TA-CCT-ATGGAACGATGAAGGTGC-------CTTCGTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................TA-CCT-ATGGAACGATGAAGGTGC-------.......2312.0020200000000
..TAGC---------------A----------------GCAGTGGCAG---CAAC------------A--......................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................GCAAG-----------TT-CG---TA-CCT-ATGGAAC.........................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................CGCAAG-----------TT-CG---TA-CCT-ATGGAACG........................2311.0010100000000
..................................................................................................................................................................................................................................................................................................................................................C-----------A--------GCCGCCGCAAG-----------TT-CG---TA-CCT-A...............................2311.0010100000000
....................................................................................................................................................................................................................................................................................................................................AACAACAGCA---GC-----------A--------GCCGCCGCAAG-----------...............................................2411.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................ATGGAACGATGAAGGTGC-------CTT....2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................CCGCAAG-----------TT-CG---TA-CCT-ATGGA...........................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................ACAACAGCA---GC-----------A--------GCCGCCG..............................................................1930.3310100000000
....................................................................................................................................................................................................................................................................................................................................AACAACAGCA---GC-----------A--------GCCGCC...............................................................1960.1710100000000
............................................................................................GCAGCAAC---AACA-ACA---A----C------------A---------------GCAGCAAC................................................................................................................................................................................................................................................................................2660.1710000010000
............................................................................................................................................................AACAA------------------CAACAACAACA---------------GCAGC..........................................................................................................................................................................................................................21200.1530030000000
.......................................................................................................................................................GCAACAACAA------------------CAACAACAACA---------------GCAGC..........................................................................................................................................................................................................................2690.1110100000000
............................................................................................GCAGCAAC---AACA-ACA---A----C------------A---------------GC......................................................................................................................................................................................................................................................................................20200.1020200000000
...................................................................................................C---AACA-ACA---A----C------------A---------------GCAGCAACAAC.............................................................................................................................................................................................................................................................................22200.1020011000000
...................................................................................................C---AACA-ACA---A----C------------A---------------GCAGCAACAACA............................................................................................................................................................................................................................................................................23200.1020110000000
..........................................................................................................A-ACA---A----C------------A---------------GCAGCAACAACAA------------------CA.......................................................................................................................................................................................................................................................22200.1020101000000
......................................................................................GCAGCAGCAGCAAC---AACA-ACA---A----C------------........................................................................................................................................................................................................................................................................................................23200.1020200000000
............................................................................................................................................................................................................................................................................................................................ACAACAACAACAACAGCA---GC-----------..............................................................................20200.1020020000000
................................................................................................................................................................................................................................CAAC---AGCA---------------------GCAACAGCAGCA................................................................................................................................................................20200.1020200000000
......................................................................................................................................................................................................................................................................GCAGCAACA---------------AC------------------AGCAGCAGCA................................................................................................................21200.1020200000000
............................................................................................................................................................................................CA---------------GCAGCAGCA---ACAA---CAAC---AGCA---------------------GCAAC.......................................................................................................................................................................28110.0910001000000
.............................................................................................................................................................................................................GCAGCAGCA---ACAA---CAAC---AGCA---------------------GCAAC.......................................................................................................................................................................26120.0810001000000
.................................................................................................................................................................................................................CAGCA---ACAA---CAAC---AGCA---------------------GCAACAG.....................................................................................................................................................................24130.0810100000000
.............................................................................A------CAGCAGCAGCAGCAAC---AACA-ACA---A----C------------........................................................................................................................................................................................................................................................................................................26140.0710010000000
...................................................................................................................................................................................................................GCA---ACAA---CAAC---AGCA---------------------GCAACAGCA...................................................................................................................................................................24140.0710010000000
.................................................................................................................................................................................................................................................................................................................................AACAACAACAGCA---GC-----------A--------GCC..................................................................19180.0610010000000
..............................................................................................................A---A----C------------A---------------GCAGCAACAACAA------------------CAACAACA.................................................................................................................................................................................................................................................25190.0510100000000
..............................................................................................................................................................................................................................................................................................AC------------------AGCAGCAGCAACAACAAC........................................................................................................20200.0510001000000
.............................................................................................................................................................................................................................................................................CA---------------AC------------------AGCAGCAGCAACAACA..........................................................................................................20200.0510000100000
..........................................................................................................................................................................................................................................................................CAACA---------------AC------------------AGCAGCAGCAACAACAAC........................................................................................................25200.0510010000000
...........................................................................................AGCAGCAAC---AACA-ACA---A----C------------A---------------GC......................................................................................................................................................................................................................................................................................21200.0510100000000
..............................................................................................................................................................................................................CAGCAGCA---ACAA---CAAC---AGCA---------------------G...........................................................................................................................................................................21200.0510100000000
.........................................................................................................CA-ACA---A----C------------A---------------GCAGCAACAACAA------------------CA.......................................................................................................................................................................................................................................................23200.0510100000000
................................................................................................CAAC---AACA-ACA---A----C------------A---------------GCAGCA..................................................................................................................................................................................................................................................................................20200.0510100000000
........................................................................................................................................................................................................................................................................AGCAACA---------------AC------------------AGCAGCAGCAA...............................................................................................................20200.0510000100000
.........................................................................................................................................................................................................................................................................GCAACA---------------AC------------------AGCAGCAGCAACAA............................................................................................................22200.0510000100000
..........................................................................................................................................................................................................................CAA---CAAC---AGCA---------------------GCAACAGCAG..................................................................................................................................................................21200.0510100000000
.................................................................................................................................................................................................................................................................CAACAGCAGCAACA---------------AC------------------AGCAGCA...................................................................................................................23200.0510000100000
.......................................................................................CAGCAGCAGCAAC---AACA-ACA---..........................................................................................................................................................................................................................................................................................................................20200.0510000001000
...................................................................................................................................................................................................................................................................ACAGCAGCAACA---------------AC------------------AGCAGC....................................................................................................................20200.0510100000000
..................................................................................................AC---AACA-ACA---A----C------------A---------------GCAGCAACA...............................................................................................................................................................................................................................................................................21200.0510100000000
......................................................................................................................................................................................CAACAACA---------------GCAGCAGCA---AC.................................................................................................................................................................................................................19200.0510010000000
...............................................................................................................................................................................................................................................................................................C------------------AGCAGCAGCAACAACAACA.......................................................................................................20200.0510010000000
..........................................................................................................................................................ACAACAA------------------CAACAACAACA---------------GCAGC..........................................................................................................................................................................................................................23200.0510010000000
...................................................................................................................................................................................CAACAACAACA---------------GCAGCAGCA---ACA................................................................................................................................................................................................................23200.0510000100000
..............................................................................................AGCAAC---AACA-ACA---A----C------------A---------------GCAGCA..................................................................................................................................................................................................................................................................................22200.0510010000000
.......................................................................................................AACA-ACA---A----C------------A---------------GCAGCAACAAC.............................................................................................................................................................................................................................................................................21200.0510100000000
................................................................................................................................................................A------------------CAACAACAACA---------------GCAGCAGCA---...................................................................................................................................................................................................................21200.0510100000000
.........................................................................................................................................................................................................................................................................................................................GCAACAACAACAACAACAGCA---G..........................................................................................22200.0510100000000
........................................................................................................................................................................................................................................................................AGCAACA---------------AC------------------AGCAGCAGCA................................................................................................................19200.0510100000000
..................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAACAACA....................................................................................................22200.0510100000000
.............................................................................................................CA---A----C------------A---------------GCAGCAACAACAA------------------CAACAA...................................................................................................................................................................................................................................................24200.0510001000000
..............................................................................................................................................................................................................................................................................................AC------------------AGCAGCAGCAACAACAACA.......................................................................................................21200.0510000001000
.............................................................................................CAGCAAC---AACA-ACA---A----C------------A---------------GCA.....................................................................................................................................................................................................................................................................................20200.0510100000000
..............................................................................................................................................................CAA------------------CAACAACAACA---------------GCAGCAGC.......................................................................................................................................................................................................................22200.0510100000000
.....................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAACAACAACAGC...............................................................................................24200.0510010000000
..........................................................................................................................................................................................AACA---------------GCAGCAGCA---ACAA---CAAC---.....................................................................................................................................................................................................21200.0510010000000
...........................................................................................................................................................................................................................................................................................................................AACAACAACAACAACAGCA---GC-----------A--------GC...................................................................24200.0510100000000
..........................................................................................................................................................................................AACA---------------GCAGCAGCA---ACAA---CAAC---AG...................................................................................................................................................................................................23200.0510010000000
.......................................................................................................................................................GCAACAACAA------------------CAACAACAACA---------------...............................................................................................................................................................................................................................21200.0510100000000
....................................................................................CAGCAGCAGCAGCAAC---AACA-ACA---A----.....................................................................................................................................................................................................................................................................................................................24200.0510100000000
..........................................................................................CAGCAGCAAC---AACA-ACA---A----C------------A---------------GCAGCA..................................................................................................................................................................................................................................................................................26200.0510010000000
...........................................................................................................................................................................................................................................................................................................................AACAACAACAACAACAGCA---GC-----------A--------G....................................................................23200.0510000100000
...................................................................................................................................................................................CAACAACAACA---------------GCAGCAGCA---ACAA---CC..........................................................................................................................................................................................................26200.0510100000000
.....................................................................................................................................................................................................................A---ACAA---CAAC---AGCA---------------------GCAACAGCA...................................................................................................................................................................22200.0510001000000
......................................................................................................................................................................................CAACAACA---------------GCAGCAGCA---ACAA---CAAC---.....................................................................................................................................................................................................25200.0510010000000
...........................................................................CAA------CAGCAGCAGCAGCAAC---A....................................................................................................................................................................................................................................................................................................................................20200.0510100000000
...................................................................................................................................................................................................................................................................ACAGCAGCAACA---------------AC------------------AGCAG.....................................................................................................................19200.0510100000000
......................................................................A---TCAA------CAGCAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................19200.0510000100000
..............................................................................................................................................................................................................................................................................A---------------AC------------------AGCAGCAGCAACAACAAC........................................................................................................21200.0510010000000
droPer2
AACAGC---------------A----------------ACAACACCAA---CAG------------CATCA---TCAT------CATCAGCTACAACAGC------A-ACT----GCTGC------------T---------------CCAGCAACAACAACAAC---A------------GCAGCAACA---------------GCAACTGCA---GCAG---CAAC---AGCA---------------------GCAACAACAGCAATT---------------AC------------------AACAGCAGCAACAGCAACAGCAGCAACA---AC-------------------AATTGCTAATGC-----------CA-CA---ACAACA----------------------------ACAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................GCAACAACAACAAC---A------------GCAGC..................................................................................................................................................................................................................................................20200.051010000
.........................................................................................................................................................AACAACAACAAC---A------------GCAGCA.................................................................................................................................................................................................................................................19200.051010000
..........................................................................................................................................................ACAACAACAAC---A------------GCAGCAAC...............................................................................................................................................................................................................................................20200.051010000
droAna3
CATCC-TGAGGTTGCAGACAG------AG----GCG---------CAG------------------CCAAG---GCAG------CAGCAGCAGCAGCAGTTGCAGCA-GCA---A----C------------A---------------CTTGCAACAGCAA---------------------CAGAT------G------CAGCAGCAG---------CAG---CAACTGCAGCA--------------ACA----GCAACAGCAACTGCA---------------AC------------------AGCAGCAGCAGCAACTGCAGCAACAGCA---AC-----------A------------------------------AC-CT---TCTCCC----------------------------ATGCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................AG---------CAG---CAACTGCAGCA--------------ACA----G...........................................................................................................................................................................2040.251100000
........................................................................................................................................................................................................................................................................................................................AGCAGCAACTGCAGCAACAG................................................................................................2040.251100000
............................................................................AG------CAGCAGCAGCAGCAGTTGCAGCA-................................................................................................................................................................................................................................................................................................................................2560.171100000
.......................................................................................................................................................................................................................................................................................................................CAGCAGCAACTGCAGCAAT..................................................................................................19140.071010000
..............................................................................................................................................................................................................CAG---------CAG---CAACTGCAGCA--------------AT.................................................................................................................................................................................19140.071010000
.................................................................................................................................................................................................................................AACTGCAGCA--------------ACA----GCAACAGCAG..................................................................................................................................................................23200.051010000
droBip1
AACGG----------------T-----------GCA---------CAA---C---------------AACA---ACAA------CAACAGCATCAACAAC---ATCA-ACA---A----C------------A---------------TCAGCAACA------------------------------------------------ACAAC---AACAACAT---CATC---ATCAAAGGGTTGCCAGCAGCAACCAGCAGCAGCTGCAACA---------------GC------------------AACAGCAACAACAACAACAACAACAGCA---GC-----------A---------------TGAT-----------AA-T-----------------------------GGTCCTGCCTCCCTSizeHit CountTotal NormTotal
No Reads
droKik1
GATTT-TCAATTCATCAACAG------CA---------------GCAG---CAGCAACAACAACAGCATCTACAGCAG------CAGCAACAACAGCATTTA-----------------------------------------------C---------AGC---AGCAGCAACAA---CAGCATTT------A------CAGCAGCAG---------CAG---CATTTACAGCA--------------GCA----GCAACAACAGCATCT---------------AC------------------AGCAGCAGCAACAACAGCATTTACAGCA---GC-----------A--------------GC--------------AG-CA---GCAGCA----------------------------TTTACSizeHit CountTotal NormTotal
No Reads
droFic1
GCAG--C--------------A-----------GTG---------CAGCAGCAG---------CAGCAGCA---ACAG------CAGCAGCAGCAACATC------T-AC-------------------------------------------------AGC---AGCAGCTGCAACAGCAACAACAACA---------------GCAGCAGCA---GCAA---CAAC---AACA---------------------GCAGCAACAACAACA---------------AC------------------AGCAGCAGCAACAACAACT--AGCAGCA---GT-----------------------GACGAGGA-----------AA-CA---CTCGAA----------------------------ACGCTSizeHit CountTotal NormTotal
No Reads
droEle1
GCTGGC---------------AGTTTTAGCGATCTGCA-GC---TGAA---------------CAACATCA---CCAG------CATCAGCAATCACAAT------A-GCA----AGATC------------G---------------CGAGCAACCAAAACAAC-----------------CGACGACA---------------GCAGCAGCA---ACGG---CAAC---CACA---------------------GCAGCAACAGCAACA---------------GC------------------AGCAGCAGCAGCAACACCAACAGCAGCG---AC-----------A--------GGTGGC-------------------CTCTTTAAATC----------------------------GCCATSizeHit CountTotal NormTotal
No Reads
droRho1
CAGCG-T--------------------------------CAGGTGCAG---C---------------AGCA---ACAAGAG---CACCAGCAGCAGCAGC------A-ACA----------GC---------AGCAG------------CAGCAACAACAACAAC---A------------GCAGGA------------------ACAGCAGCA---GCAA---CAAC---AACA---------------------GCAGCAGCAGCAACA---------------AC------------------AGCAGCAGCAGCAACAACAACAGCAGCAGCAAC-------------------TAGT-------------------AT-CA---GCGACA----------------------------ACACTSizeHit CountTotal NormTotal
No Reads
droBia1
CATCC-CTCAATA---GTCTA------AGCC---------------AG---C------------------------AG------CAACAGCAGCAGC-----------------------------------AGCAG------------CAGCAACAACAACAG------------------CAGCAGCA---------------GCAGC---AGCAACAC---CAGC---AGCA---------------------ACAGCAGCAGCAACA---------------TC------------------AGCAGCAGC---AG---------CAGCA---GCACACACCGAACACACCATCCTCCAGCGCGGG-----------AT-CA---TCGGCC----------------------------ACGATSizeHit CountTotal NormTotal
No Reads
droTak1
AATTG-CCAAATCATCACCAT------CATC---------------------------------------A---TCAT------CATCACCACCACCAT----------------C-------ACAGTCAAC---TA---CAACTC---CAACAACAACAGCAAC---A---AC-A--GCAGCAACA---------------CCAACAA---------CAG---CCGC---TACA---------------------CCAACAACAGCAACT---------------GCAACACCAGCAGCAACAACACCAACAAC---AA------CACTATCAGCAAC-----------A---------------TGGC-----------AT-TC---AACAAC----------------------------AGGCTSizeHit CountTotal NormTotal
No Reads
droEug1
CAAAT------ACATAAACAA--------------------------A---CAG------------CA--T---TCGGCAACAGCCACTACGAGCATGAT------GCACC----ACAGCAAC---------A---GCAACAGCAATACAAC------------------------------CAACAACAACAACATCAACACTATCATC---AGCAACAC---CATC---A------------------------GCAACA------------------------AA------------------AACAACAACAACAA------CAGCAACA-------------------------ACTGCAATCGA----------GTGCCA---CTCGCC----------------------------ATGTCSizeHit CountTotal NormTotal
No Reads
dm3
AATTGC---------------A----------------GCACCAACAC---CAGA---------------T---GCAG------CAACAACAGCAGCAGC------A-GCA----------GC---------AGCAG------------CAACAACAACAACAAC---A------------ACAACA------------------ACAACAACA---ACAA---CAAC---AACA---------------------ACAACAACAGCAGCA---------------GC------------------AGCAGCAGCAGCAACATCAACAGC--------------------AG---------------ATTATCCAGCAACAGG-CA---ACGGCTA---------C--TTCTGC-------CCTATCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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......................................................................................................................................................................................CAACA------------------ACAACAACA---ACAA---CAAC---AAC..................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................CA------------------ACAACAACA---ACAA---CAAC---AACA---------------------ACA.........................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................AAC---AACA---------------------ACAACAACAGCAGCA---------------..............................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................ACA---ACAA---CAAC---AACA---------------------ACAA........................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................GCAG------CAACAACAGCAGCAGC------A-GCA----------G..................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................C---AACA---------------------ACAACAACAGCAGCA---------------GC------------------AGCA......................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................GCAG------CAACAACAGCAGCAGC------..................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................ACAACAGCAGCA---------------GC------------------AGCAGCA...................................................................................................................21200.0510000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................GCA---------------GC------------------AGCAGCAGCAGCA.............................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................ACA---------------------ACAACAACAGCAGCA---------------GC------------------AGCAGCA...................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................CAACAACAAC---A------------ACAACA------------------ACAACAACA---ACA................................................................................................................................................................................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................CAAC---AACA---------------------ACAACAACAGCAG...............................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................CA------------------ACAACAACA---ACAA---CAAC---AACA---------------------AC..........................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................ACAACA---ACAA---CAAC---AACA---------------------A...........................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................ACAACA---ACAA---CAAC---AACA---------------------ACAACA......................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................AGCAGCAACATCAACAGC--------------------A.............................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................ACAACAGCAGCA---------------GC------------------AGCAGCAGCAGCA.............................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..........................................................................GCAG------CAACAACAGCAGCAGC------A-................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................A----------GC---------AGCAG------------CAACAACAACAACA.........................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................ACAACAACAACAAC---A------------ACAACA------------------ACAAC..........................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................AGCAGCAACATCAACAGC--------------------..............................................................................18200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................AGCA---------------GC------------------AGCAGCAGCAGCAACA..........................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................A---CAAC---AACA---------------------ACAACAACAGCAGC..............................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................CAAC---A------------ACAACA------------------ACAACAACA---ACAA---C...........................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................ACAACAGCAGCA---------------GC------------------AGCAG.....................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................CAACAACAACAAC---A------------ACAACA------------------ACA............................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................ACAACAACAAC---A------------ACAACA------------------ACAACAAC.......................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................CAAC---A------------ACAACA------------------ACAACAACA---ACAA---CA..........................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................AGCAGCAGC------A-GCA----------GC---------AGCAG------------CAA....................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................CAACAACAACAAC---A------------ACAACA------------------...............................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................AACAACAACAAC---A------------ACAACA------------------A..............................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CAGC------A-GCA----------GC---------AGCAG------------CAACAACAA..............................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CAACAGCAGCA---------------GC------------------AGCAGCA...................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................GCAGC------A-GCA----------GC---------AGCAG------------CA.....................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................CA----------GC---------AGCAG------------CAACAACAACAACAA........................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCAG-----------------------------------AATATGCAT------------------CACCA---TCAA------CATCAGCAGCAACACATGCAGCA-G----------C------------AGCAG------------CAACAACAACAACATC---A---------------GCAGCA---------------GCAGCAGCA---ACAA---CAAC---AACA---------------------TCAGCAGCAGCAACA---------------CC------------------AACAGCAGCAGCAACAACAACAGCATCC---A------------------ACCATTGGAATG------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................CAGCAACACATGCAGCA-G----------C------------AGC.....................................................................................................................................................................................................................................................................................................2211.00100000000001000000
..AG-----------------------------------AATATGCAT------------------CACCA---TCAA------CAT.....................................................................................................................................................................................................................................................................................................................................................2311.00100000100000000000
........................................................................................AGCAGCAACACATGCAGCA-G----------C------------A.......................................................................................................................................................................................................................................................................................................2211.00100000000001000000
......................................................................................................................................................................................................................................................................GCAGCAACA---------------CC------------------AACAGCAGCAGC..............................................................................................................23101.0010000001000000000000
...........................................................................................................................................................................................................................................................................AACA---------------CC------------------AACAGCAGCAGCA.............................................................................................................19160.9415000015000000000000
..................................................................................................................................................................................................................AGCA---ACAA---CAAC---AACA---------------------TCAGCA......................................................................................................................................................................2240.25100010000000000000
.......................................................................................................................................AG------------CAACAACAACAACATC---A---------------GCA.................................................................................................................................................................................................................................................2240.25100010000000000000
..................................................................................................................................................................................................................................AC---AACA---------------------TCAGCAGCAG..................................................................................................................................................................16140.07100000000001000000
.....................................................................................................................................................................................................................................................................AGCAGCAACA---------------CC------------------AACAGCAGCAGCT.............................................................................................................25140.07100000000001000000
.............................................................................................................................................................ACAACATC---A---------------GCAGCA---------------G..............................................................................................................................................................................................................................16140.07100000000001000000
droSec2
GGTG-----------------------------------------CAA------------------CAGCA---ACAGCAG---CATCAGCAGCAGCAGC------A-GCA----------GC---------AACAG------------CAACAACAACAACAAC---A------------GCAACA------------------ACAACAACA---ACAA---CAAC---AACA---------------------ACAGGTGCAGCACCAACAGCAGCAGCAAAAGC------------------TTCAGTTGCAGCAACAACAGCAGCATCA---AC-------------------------------------------A-CA---ACTCGA------ACAATTTGATTGTC---------GGCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................CA---ACAGCAG---CATCAGCAGCAGCAGC------..................................................................................................................................................................................................................................................................................................................................2540.2511000
...............................................................................................................................................................AACAAC---A------------GCAACA------------------ACAACAACA---ACA................................................................................................................................................................................................................2560.1711000
...................................................................AGCA---ACAGCAG---CATCAGCA................................................................................................................................................................................................................................................................................................................................................1970.1410010
.............................................................................GCAG---CATCAGCAGCAGCAGC------A-GC..............................................................................................................................................................................................................................................................................................................................23100.1010010
......................................................................A---ACAGCAG---CATCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................19140.0710001
.........................................................................................................................................................................................................................................................................GCACCAACAGCAGCAGCA.................................................................................................................................................18170.0610001
.....................................................................................ATCAGCAGCAGCAGC------A-GCA----------GC---------A.......................................................................................................................................................................................................................................................................................................22200.0510001
....................................................................................CATCAGCAGCAGCAGC------A-GCA----------...................................................................................................................................................................................................................................................................................................................20200.0510001
..............................................................................................AGCAGC------A-GCA----------GC---------AACAG------------CA.....................................................................................................................................................................................................................................................................................19200.0510001
...............................................................................................GCAGC------A-GCA----------GC---------AACAG------------CAACA..................................................................................................................................................................................................................................................................................21200.0510010
droYak3
ATCG--AAAAGCAGCGAAC-T------CAGA---------------AG---CAGCAGGCCACGCAGCAGCA---ACAA------ATTCAGCAGCAGCAATTGCAGCA-CCAACAA----C------------A---------------GATGCAACAACA------------------------ACAACA---------------GCAGCAGCA---ACAA---CAAC---AACA---------------------GCAGCAGCAACAACA---------------AC------------------AGCAGCAGCAGCAACAACAACAGCAGCA---GC-----------AG---------------ATCATCCAGCAACAGG-CA---ACTGCTA---------C--TTCTGC-------CCTTTCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................AACAGG-CA---ACTGCTA---------C--TTCTGC-------CCT....2511.00100100000000
.................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCA---GC-----------AG---------------ATCATCCA.....................................................2511.00101000000000
..................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAACAAC.....................................................................................................21200.10202000000000
................................................................................................................................................................................................................GCAGCA---ACAA---CAAC---AACA---------------------GCAGCAGCA...................................................................................................................................................................27120.08101000000000
..................................................................................................................................................................................................................................AC---AACA---------------------GCAGCAGCAACAACA---------------AC------------------AG........................................................................................................................25130.08101000000000
..................................................................................................................................................................................................................................AC---AACA---------------------GCAGCAGCAACAACA---------------AC------------------AGC.......................................................................................................................26130.08100100000000
.................................................................................................................................................................................................................................AAC---AACA---------------------GCAGCAGCAACAACA---------------AC------------------AG........................................................................................................................26130.08101000000000
...................................................................................................................................................................................................................................................................GCAGCAACAACA---------------AC------------------AGCAGCAGCAGC..............................................................................................................26170.06101000000000
.............................................................................................................................................................................................A---------------GCAGCAGCA---ACAA---CAAC---AAC..................................................................................................................................................................................................21200.05101000000000
...................................................................................................................................................................................................................................C---AACA---------------------GCAGCAGCAACAACA---------------AC------------------AGCA......................................................................................................................26200.05101000000000
.......................................................................................................................................................................................................................................AACA---------------------GCAGCAGCAACAACA---------------AC------------------AGCA......................................................................................................................25200.05101000000000
droEre2
ACCAGC---------------A----------------GCAGCATCAG---CAGCAGCAGCAGCAGCATCA---ACAG------CAGCAGCAGCAGCAAC------A-G----------------------------------------CAGC------AACAGC---A------------GCAACA------------------GCAGCAGCA---GCAACAACAGC---AACA---------------------GCAGCAGCAGCAACAGCAGCAGCATCA---AC------------------AGCAACAGCAGCAA------CAGCAACAGCAGC-----------A--------------GC--------------AG-TT---GCAGCC----------------------------ACAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................AA------CAGCAACAGCAGC-----------A--------------GC--------------AG-TT---.......................................2220.5010001000
...............................................................................................................................................................................................................................................................................................................................A------CAGCAACAGCAGC-----------A--------------GC--------------AG-TT---.......................................2120.5010000010
.................................................................................................................................................................................................................................................................................AGCAGCATCA---AC------------------AGCAACA...................................................................................................................1930.3310000100
..............................................................GCAGCATCA---ACAG------CAGCAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................2640.2510100000
...................................................................................................................................................................GC---A------------GCAACA------------------GCAGCAGCA---GC.................................................................................................................................................................................................................20200.1531000020
....GC---------------A----------------GCAGCATCAG---CAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................20200.1022000000
...............................................................................................................................................................AACAGC---A------------GCAACA------------------GCAGCA.........................................................................................................................................................................................................................19200.1020002000
ACCAGC---------------A----------------GCAGCATCAG---C........................................................................................................................................................................................................................................................................................................................................................................................18100.1010000010
.....................................................................................................................................................CAGC------AACAGC---A------------GCAACA------------------GCAGCA.........................................................................................................................................................................................................................23200.1021000100
..............................................................................................................................................................................................................................................................................................................................AA------CAGCAACAGCAGC-----------A--------------GC--------------...............................................18200.1020000020
...................................................................................................................................................................................................................GCA---GCAACAACAGC---AACA---------------------GCAGCA......................................................................................................................................................................24120.0810000010
....................................................AGCAGCAGCAGCAGCATCA---ACA...............................................................................................................................................................................................................................................................................................................................................................22120.0811000000
..................................................................CATCA---ACAG------CAGCAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................22160.0610001000
.....................................................................................................................................................................................................................A---GCAACAACAGC---AACA---------------------GCAGCA......................................................................................................................................................................22160.0610000010
.......................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGC-----------A--------------GC--------------AG-T...........................................18190.0511000000
.....C---------------A----------------GCAGCATCAG---CAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................22200.0510000010
.........................................................................................................................................................................................................................GCAACAACAGC---AACA---------------------GCAGC.......................................................................................................................................................................20200.0510100000
............................................................................................GCAGCAAC------A-G----------------------------------------CAGC------AACAGC---A------------GCA....................................................................................................................................................................................................................................................24200.0510000100
......................................................................................................................................................AGC------AACAGC---A------------GCAACA------------------GCAGCAGCA---GC.................................................................................................................................................................................................................27200.0511000000
......................................................................................................................................................AGC------AACAGC---A------------GCAACA------------------GCA............................................................................................................................................................................................................................19200.0510000100
..................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAA------CAGCA.................................................................................................19200.0510000100
............................................................................................................................................................................................................................ACAACAGC---AACA---------------------GCAGCAGC....................................................................................................................................................................20200.0511000000
........................................................................................................................................................................................................................................ACA---------------------GCAGCAGCAGCAACAGC...........................................................................................................................................................20200.0511000000
...................................................................................................................................................................................................................................C---AACA---------------------GCAGCAGCAGCAACAGCA..........................................................................................................................................................23200.0510000010
.......................................................................................................................................................................................................................................AACA---------------------GCAGCAGCAGCAACAGCAGCA.......................................................................................................................................................25200.0510001000
...................................................................ATCA---ACAG------CAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................19200.0510000010
......................................................................................GCAGCAGCAGCAAC------A-G----------------------------------------CA.....................................................................................................................................................................................................................................................................................18200.0511000000
..........................................................................................................A-G----------------------------------------CAGC------AACAGC---A------------GCAACA------------------GCAGCAG........................................................................................................................................................................................................................26200.0511000000
...................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGCA....................................................................................................................................................21200.0510001000
..........................................................................................................................................................................................................................CAACAACAGC---AACA---------------------GCAGCAG.....................................................................................................................................................................21200.0510001000
........................................................................................................................................................................A------------GCAACA------------------GCAGCAGCA---GCA................................................................................................................................................................................................................19200.0510001000
..................................................................CATCA---ACAG------CAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................20200.0510000010
......................................................................................................................................................................................................................................................................................................................ACAGCAGCAA------CAGCAACAGC............................................................................................20200.0510100000
........................................................................................AGCAGCAGCAAC------A-G----------------------------------------CAGC------A............................................................................................................................................................................................................................................................................19200.0510001000
...................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGC.....................................................................................................................................................20200.0511000000
.......................................................................................................................................................................................................................................AACA---------------------GCAGCAGCAGCAACAGCAGC........................................................................................................................................................24200.0510000010
..........................................................................................................................................................................................................................CAACAACAGC---AACA---------------------GCAGCA......................................................................................................................................................................20200.0510100000
............................................................................AG------CAGCAGCAGCAGCAAC------A-G----------------------------------------CAGC------.............................................................................................................................................................................................................................................................................24200.0510100000
......................................GCAGCATCAG---CAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................21200.0510000100
...................................................................................................................................................................GC---A------------GCAACA------------------GCAGCAGCA---GCAA...............................................................................................................................................................................................................22200.0511000000
..........................................CATCAG---CAGCAGCAGCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................23200.0510001000
.........................................GCATCAG---CAGCAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................21200.0510000010
.....................................................................................................................................................................................GCAACA------------------GCAGCAGCA---GCAACA.............................................................................................................................................................................................................21200.0510000010
................................................................................................................................................................................................................................CAGC---AACA---------------------GCAGCAGCAGC.................................................................................................................................................................19200.0510100000
..........................................................................................................................................................................................................................CAACAACAGC---AACA---------------------GCAGC.......................................................................................................................................................................19200.0511000000
................................................................................................................................................................ACAGC---A------------GCAACA------------------GCAGCA.........................................................................................................................................................................................................................18200.0510000100
.............................................................................................CAGCAAC------A-G----------------------------------------CAGC------AACAGC---A------------GCA....................................................................................................................................................................................................................................................23200.0511000000
.........................................................................................................................................................................................................................................CA---------------------GCAGCAGCAGCAACAGC...........................................................................................................................................................19200.0510000010
....................................................................................................................................................................C---A------------GCAACA------------------GCAGCAGCA---GCAAC..............................................................................................................................................................................................................22200.0510100000
.............................................................................................................................................................................................................................CAACAGC---AACA---------------------GCAGCAGCAGCA................................................................................................................................................................23200.0510001000
....GC---------------A----------------GCAGCATCAG---CAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................23200.0510100000

Generated: 05/18/2015 at 02:46 AM