ID:

dmo_2510

 Coordinate:

scaffold_6680:16476864-16476965 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.4 -13.2 -13.1 -13.1

Flybase annnotation

CDS [Dmoj\GI13600-cds]; exon [dmoj_GLEANR_13514:2]; CDS [Dmoj\GI13600-cds]; exon [dmoj_GLEANR_13514:3]; intron [Dmoj\GI13600-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
mature
star
  1. scaffold_6473:1540776-1540797 -
  2. dmo_2510  scaffold_6680:16476940-16476961 +

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------##################################################
CAGTACCAGTTGGCCAAGCAGCTGCCGCAGCTGCATGTGGCCGACTCCATGTACTCGCTGCACACGCTGAGCACGCCGAGCAACGGCAGCAGCAGCATCGGCGGCGGCGGCGGCAGCAACAGCAGCAGCAGCAGCTACAACTACAACTACAGCTATGCCTCCTTGCCACGTCGCACGCATGGCGGCAGCAGCAGCAGCATCA
***************************************************************************************((..............((.((.((.((.......)).)).)).))..............))****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body
.......................................................................................AGCAGCAGCATCGGCGGCGGCGGC........................................................................................... 24 0 1 1.00 1 0 0 1
....ACCAGTTGGCCAAGCAGCTGCCGCAGCT.......................................................................................................................................................................... 28 0 1 1.00 1 1 0 0
..........................................GACTCCATGTACTCGCTGCACAC......................................................................................................................................... 23 0 1 1.00 1 1 0 0
........................................................................................................................................................CTATGCCTCCTTGCCACGTC.............................. 20 0 1 1.00 1 1 0 0
..............CAAGCAGCTGCCGCAGCT.......................................................................................................................................................................... 18 0 1 1.00 1 1 0 0
......CAGTTGGCCAAGCAGCTGCC................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0
....ACCAGTTGGCCAAGCAGCTGCC................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0
....................................................................................GGCAGCAGCAGCATCGGCGGCGGCGGC........................................................................................... 27 0 1 1.00 1 0 0 1
..........................................GACTCCATGTACTCGCTGCACACGCT...................................................................................................................................... 26 0 1 1.00 1 1 0 0
...................AGCTGCCGCAGCTGCATGTG................................................................................................................................................................... 20 0 1 1.00 1 1 0 0
............................................CTCCATGTACTCGCTGCACACGCT...................................................................................................................................... 24 0 1 1.00 1 1 0 0
............................................CTCCATGTACTCGCTGCACA.......................................................................................................................................... 20 0 1 1.00 1 1 0 0
..............................................................................................................................AGCAGCAGCTACAACTACAACT...................................................... 22 0 2 0.50 1 1 0 0
..............................................................CACGCTGAGCTCGTCGAGC......................................................................................................................... 19 2 2 0.50 1 0 1 0
....................................................................................................................................AGCTACAACTACAACTACAGCT................................................ 22 0 4 0.25 1 1 0 0
................................................................................................................GCAGCAACAGCAGCAGCAGCA..................................................................... 21 0 20 0.15 3 3 0 0
..............................................................................AGCAACGGCAGCAGCAGCA......................................................................................................... 19 0 20 0.05 1 1 0 0

Anti-sense strand reads

GTCATGGTCAACCGGTTCGTCGACGGCGTCGACGTACACCGGCTGAGGTACATGAGCGACGTGTGCGACTCGTGCGGCTCGTTGCCGTCGTCGTCGTAGCCGCCGCCGCCGCCGTCGTTGTCGTCGTCGTCGTCGATGTTGATGTTGATGTCGATACGGAGGAACGGTGCAGCGTGCGTACCGCCGTCGTCGTCGTCGTAGT
******************************************************((..............((.((.((.((.......)).)).)).))..............))*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
.......................................................GCGGCGTGTACGACTCGTGCG.............................................................................................................................. 21 2 2 0.50 1 1
...............TTCGTGGACTGCTTCGACGTA...................................................................................................................................................................... 21 3 5 0.20 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6680:16476814-16477015 + dmo_2510 C-AGTACCAGTTGGCCAAG---------------------------------------------------------------CAGCT-----GC--------CG--CAGC-TGCAT-GTGGCCGACTCCATGTACTCGCTGCACACGCTGAGC---------------------------------------------------------------------ACGC------------------------------C-----------------------------------------------------------------------------------------------------------GAGCAACGGCA---------------GC--------------AGCAGCATCGGCGGCGGCGGCG---------------------GCAGCAACAGCA------GCAGCAGCAGC---------TACAACTAC------------AACTACAGCT---ATGCCTCCTTGCCACGTCGC------ACGC----------ATGGCGGCAGC-----AGCAGCAGCAT--CA
droVir3 scaffold_13049:21921742-21921905 + C-AATACCAGCTGGCCAAG---------------------------------------------------------------CAGCT-----GC--------CG--CAGC-TGCAC-GTGGCCGATTCCATGTACTCGCTGCACACACTGACC---------------------------------------------------------------------ATGC------------------------------C-----------------------------------------------------------------------------------------------------------CA-----------------------------------------ACAACAGCAGCAGCGGCAGCAGCAGCAGCAATAGCT------------------------ACAG---------------------------------------TTACAATT---ATGCCTCGCTGCCGCGACGC------AG------CC----AT---------------GGAGGAGTTG--C-
droGri2 scaffold_15053:294793-294974 + C-AATACCAGTTGGCCAAG---------------------------------------------------------------CAGTT-----GC--------CG--CAGC-TGCAT-GTCGCCGACTCCATGTACTCGCTGCATACACTGGCCCACACGCCCACAGCCACACACCCACACACACACACACACACGC------------------CCAACTCGATGC------------------------------C-----------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------AGCTACAGTT---ATGCATCGTTGCCGCGACGC------AG------TC----ATGGTAGC---------GCTGCTGCTG---C
droWil2 scf2_1100000003104:1781-1980 - C-AGCACTGCCAG---------------------------------------------------------------------CAGCA-----GC--------AG--CAGC-AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCA------GCAGCAACATCAGCACTGCCAG------------------------CAGCAACATCAGCACT-----GCCAGCACCAGCAGC-----------------------------AGCAGCAGCAGCACTGCCAGTAGCA---------GCA------GCA---------------GCACCAGCAGCAGTAGCAGCAACATCAGC------------AGCAGCAGCA---CTGCCA--------CC-ACCAGAATTACCATCAACA----------TCAGC-----AGCAGCAGCAA--CA
dp5 4_group3:963322-963507 - C-AGCAGCAGCAG--------------------------------------------------------------------------CTCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCAGCAACTGCTGCAGCTCTCGATTCAGCAGGCTGC------------------------------C--CATCACCATCAGC-----------------------------AGCAGGAGCAGCACCGTCAGCAGCAGCATCAACAGCA------------------------GCAGCAGCAAC---------ACCATCAGC------------AGCAGCAGCA---GGGCCA--------CC-CGCAAGCGCCCCCACCGCC----------GCAGC-----AGCAGCAGCAGC-CA
droPer2 scaffold_1:2441861-2442048 - C-AGCAGCAGCAG--------------------------------------------------------------------------CTCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCAGCAACTGCTGCAGCTCTCGATTCAGCAGGCTGC------------------------------C--CATCACCATCAGC-----------------------------AGCAGGAGCAGCACCGTCAGCAGCAGCATCAACAGCA------------------------GCAGCAGCAAC---------ACCATCAGC------------AGCAGCAGCA---GGGCCACCC--------CGCAGGCGCCCCCACCGCC----------GCAGC-----AGCAGCAGCAGCCCA
droAna3 scaffold_12943:4150661-4150860 + C-AGCAGCAACAC--------------------------------------------------------------------------CACCAGCAGTGG---GG--CAGCCAGCAC-ATGGCCGCCATGCAGCAGCAGCAGCAGGCGGCGGCGG-----------------------------------------C------------------------------------------------------------C------------------------------CA------ACAGCAGCAGCAGCAAGCCCAG-----------------------------------------------CA---------GC------------AGGCGGCGGC---CCAA-----------CAACAACAGCAGC---AACAGCAA--------------GCAGCGCC-------------------------------GC------------AACAGCAGC---------AGGCAGCCATGCTGCAGG------C----------ACAGCAGCAAC-----ATCACCAGCAA--CA
droBip1 scf7180000396728:856155-856355 - C-AGCAACAGCTC--------------------------------------------------------------------------CA---A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCATCAGTTGCTGCAGCTGTCCATTCAACAGGCGGCGCACCATCAGCAGCAGGAGCAGCATC-----GCCAACAGCAGCA---------------AC--------------AACAGCAGCAGC---------------AACAACAGCA------------------------GCAGCACCAACAGCAGCAGCAGCACCATC------------AGCAACAGCA---AGGCCA--------TC-CACAGGCA---CCACCGCC----------GCAGC-----AGCAACAGCAGC-CA
droKik1 scf7180000302685:196318-196510 + C-AGCAACAACAG--------------------------------------------------------------------------CATCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCAGCAACAACAGCATTTACAGCAGCAGCAGCAGCA------------------------------G--CATTTACAGCAGC-----------------------------AGCAGCAACAGCATCTACAGCAGCAGCAGCAACATCACCAGCAGCAACAACAACAGCA---TCTACAGCAGC---------AACAGCAGC------------------------------A--------GC-TGCAGCAACATCTACAGCA----------GCAAC-----AGCAGCAGCATCATC
droFic1 scf7180000453493:154520-154710 - C-AGCAGCAGTTG--------------------------------------------------------------------------CAGCAGC--------AG--CAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTGCTGCAGCTGTCCATCCAGCAGGCGGCGCATCACCACCAGCAGGAGCAGCACC-----GCCA------------------------GCAGC---AGCAGCAG-----------------------------CAACACCA---GCA------------------GCAGCAACAACAGCAGCAGCATCACCAGC------------AGCAACAGCA---GGGCCA--------TC-CGCAGGCC---CCGCCGCC-------------GC-----AGCAGCAGCAA--CA
droEle1 scf7180000491080:315323-315508 + GCAGCATCTGACC---AAG---------------------------------------------------------------CAGCA-----GC---AGAGCAG--CATC-CAGAC-GCAGCTCT-CCCAGATCAGC-------GCTGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGC------------------------------C--CATCACCAACAGCAACAGCAGCAACAACAACAGCA---GCAG--------------------------CAACAACAACA------------------------GCAGCAGCAAC---------AGCAACAACAGCAGCAGCAACAACAACAGCA------------------------GGC------------------------AGCAGCCAAGCACCAGCAG--CA
droRho1 scf7180000779410:273817-274021 - C-AGCAGCTGCCG--------------------------------------------------------------------------CC-----------------CAGC-AGCAG-GCAGCCCA------------GCAACAAGCGGCGGCCG-----------------------------------------CCCACCAGCAACACCAGCAGCAAGTGGCCGCCCAGCATCAGCAGCAGGCTGCGGTGGCCGCCCATCAGCAGCAGCAACAGCAGTTACAGCAGCA------GCAGCAACTGCTGCAGTTGTCCATCCAGCAGGCGGCGCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCA----------TCAAC-----AGGAGCAGCAC--CG
droBia1 scf7180000301760:5644820-5645019 + C-TGCACCTGGCC---ACGCCGCACCAGATGGTCGCCGCGGGC----------------GGTTCGCCGGTG--ATGCTCCACCAGCA-----GC--------AG--CAGC-AG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCAGCAACAGCAGCAA--------------------------------------------------------CATCAGCAGC-----------------------------AGCAGCAGCAGCAC---------------------CA---GCAGCAGCAGCAGCACCTGCAACAGCAGCAAC---------ACCACCAAC------------A----------------------------------------CCTTCACCAGCAATTCGGGCAGC-----AGCAGCAGCAG--CA
droTak1 scf7180000415863:485770-485965 + C-AACAGCAGTTG--------------------------------------------------------------------------CA---G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCAGCAACTCCTGCAGTTGTCCATCCAGCAGGCGGCTCACCATCATCAGCAGGAGCAGCATC-----GCCA------------------------GCAGC---AGCAGCAG-----------------------------CAACACCA---GCAGCAGCAACAGCA------GCAGCAGCAGC---------ATCACCAGC------------AGCAACAGCA---GGGTCA--------TC-CTCAGGCGCC---GCCGCC----A------CAGC-----AGCAACAGCAGCCGC
droEug1 scf7180000409122:194493-194713 - C-AGCAACAGGCCGCCG-----CAG---------------------------------------------------------CAGCT-----GC--------TGCCCAAC-AGCAA-GCAGCCCA------------GCAACAGGCGGCTGCTG-----------------------------------------CACATCAGCAGCATCAGCAACAAGTAGCCGCCCAGCATCAGCAACAGGCCGCAGTGGCTGCCCATCAGCAGCAGCAACAGCAGTTGCAGCAGCA------GCAACAACTGCTGCAGTTGTCCATCCAGCAGGCAGCTCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCA----------TCAGC-----AGGAGCAGCAT--CG
dm3 chr2R:3883404-3883595 - C-AGTGTCTCGCGGACAAG---------------------------------------------------------------TGGA-----------AGTGCCG--TAAC-TGAATCGCTGCCCA-GCCATGATCTC------CACTCTGA-------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCA----------------------------------------------------------------GCCAACAGCAGCA---------------GC--------------AACAGCAGCAGCAACAGCAGCAGCAGCAGCAACACCA------------------------ACAGCAGCAGC---------ATC---AGC------------AGCAACAGCA---AC---G--------GA-CGCAGACAACACCTCAGCC-------------GA-----CGCAGCAGCAA--CA
droSim2 3l:4520790-4521001 + C-AGTTGCACCAA---------------------------------------------------------------------CAGCA-----GC--------CG--CAGC-AACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCAGCAACCACTG------------ACGCAGTTGCAGCAACCACAGTTAAGGGAAC------GCGAG--CACCACCAACAGCAGCAGCAGCAGCAGCAGATGAT---GCAG--------------------------CAACCACAGCA------------------------GCAGCAGCAGA---------TGCAGCAGCCGCAGCAGCAACT--------------GCCACACAGCCATCACG----CC---CTAATGCA----------GCAAT-----CGCAGCAGCAG--CA
droSec2 scaffold_4:1116977-1117183 - C-CA-----GGTGGCA--T-------------------CGAGCACCGGAACTCCAGCCCCATCCGCCGGCGGCATTCACCAGCAGCA-----CC--------AG--CAGC-AGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCA------GCACCAGCAGCAGCAGCACCAG-----------------------------------------------CA------------------------GCAAC---AGCAGCAG--------CAACACCAACATCAGCA---------------GCAGCAACAGCAGCACCTTCAGCAGCAGCAAC---------ACCACC---------------------------------A--------GC-TGCAGCAGC---A----------ACAGCAGCAGC-----AGCAGCATCAA--CA
droYak3 3L:9059490-9059674 + C-ACTACCAGCAG--------------------------------------------------------------------------CACTATC--------CG--CAGC-AGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCTCCAGCAGCAG---------------------CAGCAGCACGC------------------------------C--CAGCAGCAACA---------------------------CC--AGCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCA------------------------ACAGCAGCAGC---------AAC---AGC------------AGCAGCAGCACTGGGACTACTATGCCAGGCAGC------AGCA----------GCAACATCAAC-----AGCAGCAGCAG--CA
droEre2 scaffold_4784:7285287-7285506 + C-CATAC-AGTTACACCAA---------------------------------------------------------------CAGCA-----GC--------CG--CAGC-AGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCAGCAGCAGCCACTG---------ACGCAGTTGCAGCAACCACAGCTAAGGGAAC------GCGAA--CACCACCAGCAGCAGCAGCAGCAGCAGCATATGAT---GCAG--------------------------CAACCACAGCA------------------------GCAGCAGCAGA---------TGCAGCAGCCGCAGCAGCAACT--------------GCCACACAGCCATCATG----CC---CTAATGCA----------GCAAT-----CACAGCAGCAG--CA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
C-AGTACCAGTTGGCCAAG---------------------------------------------------------------CAGCT-----GC--------CG--CAGC-TGCAT-GTGGCCGACTCCATGTACTCGCTGCACACGCTGAGC---------------------------------------------------------------------ACGC------------------------------C-----------------------------------------------------------------------------------------------------------GAGCAACGGCA---------------GC--------------AGCAGCATCGGCGGCGGCGGCG---------------------GCAGCAACAGCA------GCAGCAGCAGC---------TACAACTAC------------AACTACAGCT---ATGCCTCCTTGCCACGTCGC------ACGC----------ATGGCGGCAGC-----AGCAGCAGCAT--CASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................A---------------GC--------------AGCAGCATCGGCGGCGGCGGC.....................................................................................................................................................................2411.001000001
.....ACCAGTTGGCCAAG---------------------------------------------------------------CAGCT-----GC--------CG--CAGC-T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...........................................................................................................................GACTCCATGTACTCGCTGCACAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---ATGCCTCCTTGCCACGTC.....................................................2011.001100000
...............CAAG---------------------------------------------------------------CAGCT-----GC--------CG--CAGC-T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.......CAGTTGGCCAAG---------------------------------------------------------------CAGCT-----GC--------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.....ACCAGTTGGCCAAG---------------------------------------------------------------CAGCT-----GC--------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
...................................................................................................................................................................................................................................................................................................................................................................................GGCA---------------GC--------------AGCAGCATCGGCGGCGGCGGC.....................................................................................................................................................................2711.001000001
...........................................................................................................................GACTCCATGTACTCGCTGCACACGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...................................................................................AGCT-----GC--------CG--CAGC-TGCAT-GTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.............................................................................................................................CTCCATGTACTCGCTGCACACGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.............................................................................................................................CTCCATGTACTCGCTGCACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC---------TACAACTAC------------AACT................................................................................2220.501100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------TACAACTAC------------AACTACAGCT---.......................................................................2240.251100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCA------GCAGCAGCA....................................................................................................................21200.153300000
.............................................................................................................................................................................................................................................................................................................................................................................AGCAACGGCA---------------GC--------------AGCAGCA...................................................................................................................................................................................19200.051100000
droVir3
C-AATACCAGCTGGCCAAG---------------------------------------------------------------CAGCT-----GC--------CG--CAGC-TGCAC-GTGGCCGATTCCATGTACTCGCTGCACACACTGACC---------------------------------------------------------------------ATGC------------------------------C-----------------------------------------------------------------------------------------------------------CA-----------------------------------------ACAACAGCAGCAGCGGCAGCAGCAGCAGCAATAGCT------------------------ACAG---------------------------------------TTACAATT---ATGCCTCGCTGCCGCGACGC------AG------CC----AT---------------GGAGGAGTTG--C-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAATAGCT------------------------ACAG---------------------------------------TTA...............................................................................2012.002000000000000001001000000000000000000000000000000000000000000000
................AAG---------------------------------------------------------------CAGCT-----GC--------CG--CAGC-TGCAC-GTGGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................CT-----GC--------CG--CAGC-TGCAC-GTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT---ATGCCTCGCTGCCGCGAC.....................................................2111.001000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................CGCTGCACACACTGACC---------------------------------------------------------------------ATG...............................................................................................................................................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------------------------TTACAATT---ATGCCTCGCTGCCGCGACGC------.............................................2911.001000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGCGACGC------AG------CC----AT---------------GGAGGA........2311.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCGACGC------AG------CC----AT---------------GG............1811.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................GATTCCATGTACTCGCTGCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................CG--CAGC-TGCAC-GTGGCCGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------------------------TTACAATT---ATGCCTCGCT.............................................................1911.001000100000000000000000000000000000000000000000000000000000000000
..........CTGGCCAAG---------------------------------------------------------------CAGCT-----GC--------CG--CAGC-TGCAC-GT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTCGCTGCCGCGACGC------AG------C....................................2311.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................CACTGACC---------------------------------------------------------------------ATGC------------------------------C-----------------------------------------------------------------------------------------------------------CA-----------------------------------------ACAACAGCAGCAGC...........................................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
C-AATACCAGCTGGCCAAG---------------------------------------------------------------CAGCT-----GC--------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAATAGCT------------------------ACAG---------------------------------------TTAC..............................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TGGCCGATTCCATGTACTCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................GCACACACTGACC---------------------------------------------------------------------ATGC------------------------------C-----------------------------------------------------------------------------------------------------------CA-----------------------------------------ACAAC....................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................ATGTACTCGCTGCACACACTGACC---------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................GCACACACTGACC---------------------------------------------------------------------ATGC------------------------------C-----------------------------------------------------------------------------------------------------------CA-----------------------------------------AC.......................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................GCT-----GC--------CG--CAGC-TGCAC-GTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................T-----GC--------CG--CAGC-TGCAC-GTGGCCGATTCCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------------------------TTACAATT---ATGCCTCGCTGCC..........................................................2211.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACGC------AG------CC----AT---------------GGAGGAGT......2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT---ATGCCTCGCTGCCGCGACGC------.............................................2411.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................CACACACTGACC---------------------------------------------------------------------ATGC------------------------------C-----------------------------------------------------------------------------------------------------------CA-----------------------------------------AC.......................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................ATGTACTCGCTGCACACACTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............GGCCAAG---------------------------------------------------------------CAGCT-----GC--------CG--CAGC-T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCGGCAGCAGCAGCAG.............................................................................................................................................................2650.201001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................GC------------------------------C-----------------------------------------------------------------------------------------------------------CA-----------------------------------------ACAACAGCAGCAGC...........................................................................................................................................................................1970.141001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CA-----------------------------------------ACAACAGCAGCAGCGGCA.......................................................................................................................................................................20180.112000000000000000000000000000001000001000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCGGCAGCAGCAGCAGCAA..........................................................................................................................................................25100.101000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGGCAGCAGCAGCA..............................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------ACAACAGCAGCAGCGGCA.......................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CA-----------------------------------------ACAACAGCAGCAGCGGC........................................................................................................................................................................19200.051000000000000000000010000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCGGCAGCAGCAGC...............................................................................................................................................................21200.051000000000001000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGGCAGCAGCAGCAGCA...........................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCGGCAGCAGCA.................................................................................................................................................................20200.051000000000000000000000000000000000000100000000000000000000000000
droGri2
C-AATACCAGTTGGCCAAG---------------------------------------------------------------CAGTT-----GC--------CG--CAGC-TGCAT-GTCGCCGACTCCATGTACTCGCTGCATACACTGGCCCACACGCCCACAGCCACACACCCACACACACACACACACACGC------------------CCAACTCGATGC------------------------------C-----------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------AGCTACAGTT---ATGCATCGTTGCCGCGACGC------AG------TC----ATGGTAGC---------GCTGCTGCTG---CSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................AGCCACACACCCACACACA.........................................................................................................................................................................................................................................................................................................................................................................................................................1930.33110
droWil2
C-AGCACTGCCAG---------------------------------------------------------------------CAGCA-----GC--------AG--CAGC-AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCA------GCAGCAACATCAGCACTGCCAG------------------------CAGCAACATCAGCACT-----GCCAGCACCAGCAGC-----------------------------AGCAGCAGCAGCACTGCCAGTAGCA---------GCA------GCA---------------GCACCAGCAGCAGTAGCAGCAACATCAGC------------AGCAGCAGCA---CTGCCA--------CC-ACCAGAATTACCATCAACA----------TCAGC-----AGCAGCAGCAA--CASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTAGCAGCAACATCAGC------------AG..................................................................................2111.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGCAGCAACATCAGC------------AGCAGCAGCA---.......................................................................2811.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTAGCA---------GCA------GCA---------------GCACCAGCAGCAG................................................................................................................2720.50101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACA----------TCAGC-----AGCAGCAGCAA--C.2420.50100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCATCAACA----------TCAGC-----AGCA...........2120.50100010
....................................................................................................................................................................................................................................................................................................................................................................T-----GCCAGCACCAGCAGC-----------------------------AGCAG.....................................................................................................................................................................................2120.50101000
.............................................................................................................C-AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCA------GCAGCAACATCAG............................................................................................................................................................................................................................................................................................2130.33100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATCAACA----------TCAGC-----AGCAGCAG.......2330.33101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTAGCA---------GCA------GCA---------------GCACCAG......................................................................................................................2130.33101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGCAGCAACATCAGC------------....................................................................................18170.18300030
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTAGCAGCAACATCAGC------------A...................................................................................20170.12200020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTAGCAGCAACATCAG.................................................................................................18170.12200020
.............................................................................................................................................................................................................................................................................................................ACATCAGCACTGCCAG------------------------CAGC.......................................................................................................................................................................................................................................................2090.11101000
...........................................................................................................................................................................................................................................................................................................CAACATCAGCACTGCCAG------------------------CAG........................................................................................................................................................................................................................................................2190.11100010
............................................................................................................................................................................................................................................................................................................AACATCAGCACTGCCAG------------------------CAG........................................................................................................................................................................................................................................................2090.11100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGTAGCAGCAACATCAG.................................................................................................24100.10100010
....................................................................................................................................................................................................................................................................................................................................................................................GCAGC-----------------------------AGCAGCAGCAGCAC............................................................................................................................................................................19200.10202000
.......................................................................................................................................................................................................................................................................................................................................................GCAACATCAGCACT-----GCCAGCA...............................................................................................................................................................................................................................21100.10101000
..........................................................................................................................................................................................................................................................................................................GCAACATCAGCACTGCCAG------------------------CA.........................................................................................................................................................................................................................................................21100.10101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGCAGCAACATCAGC------------A...................................................................................19170.06100010
..................................................................................CAGCA-----GC--------AG--CAGC-AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCA------GCAG.....................................................................................................................................................................................................................................................................................................24180.06100010
.............................................................................................................................................................................................................................................................................................................................................................................AGCACCAGCAGC-----------------------------AGCAGCAG..................................................................................................................................................................................20200.05100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCAGC------------AGCAGCAGCA---.......................................................................20200.05100100
.............................................................................................................................................................................................................................................................................................................................................................................AGCACCAGCAGC-----------------------------AGCAGC....................................................................................................................................................................................18200.05100010
dp5
C-AGCAGCAGCAG--------------------------------------------------------------------------CTCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCAGCAACTGCTGCAGCTCTCGATTCAGCAGGCTGC------------------------------C--CATCACCATCAGC-----------------------------AGCAGGAGCAGCACCGTCAGCAGCAGCATCAACAGCA------------------------GCAGCAGCAAC---------ACCATCAGC------------AGCAGCAGCA---GGGCCA--------CC-CGCAAGCGCCCCCACCGCC----------GCAGC-----AGCAGCAGCAGC-CASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................GCAGCTCTCGATTCAGCAGGCT.......................................................................................................................................................................................................................................................................2212.0020200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGCAGCAGCATCAACAGC......................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................TGCAGCTCTCGATTCAGCA...........................................................................................................................................................................................................................................................................1911.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------AGCAGCAGCA---GGGCCA--------CC-CGCA..................................................2311.0010000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCA--------CC-CGCAAGCGCCCCCACCGCC----------.........................2511.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC---------ACCATCAGC------------AGCAGCA.............................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................GCAGCTCTCGATTCAGCAGGC........................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCC----------GCAGC-----AGCAGCAGCAGC-C.2411.0010001000000
.............................................................................................................................................................................................................................................................................................................................................................................ATCACCATCAGC-----------------------------AGCAGGAGCAG...............................................................................................................................................................................2311.0010100000000
........AGCAG--------------------------------------------------------------------------CTCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCAGC....................................................................................................................................................................................................................................................................................................2140.2510100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCATCAACAGCA------------------------GCA..........................................................................................................................21140.0710100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCATCAACAGCA------------------------GCAGCA.......................................................................................................................21150.0710100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAACAGCA------------------------GCAGCA.......................................................................................................................19200.0510000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC----------GCAGC-----AGCAGCAGCAGC-C.20200.0510100000000
droPer2
C-AGCAGCAGCAG--------------------------------------------------------------------------CTCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCAGCAACTGCTGCAGCTCTCGATTCAGCAGGCTGC------------------------------C--CATCACCATCAGC-----------------------------AGCAGGAGCAGCACCGTCAGCAGCAGCATCAACAGCA------------------------GCAGCAGCAAC---------ACCATCAGC------------AGCAGCAGCA---GGGCCACCC--------CGCAGGCGCCCCCACCGCC----------GCAGC-----AGCAGCAGCAGCCCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................CTCTCGATTCAGCAGGCC.......................................................................................................................................................................................................................................................................1811.001100000
............................................................................................................................................................................................................................................................................................................................GATTCAGCAGGCTGC------------------------------C--CAT.................................................................................................................................................................................................................................1911.001010000
................................................................................................................................................................................................................................................................................................................................CAGCAGGCTGC------------------------------C--CATCACC.............................................................................................................................................................................................................................1911.001010000
..........................................................................................................................................................................................................................................................................................................GCAACTGCTGCAGCTCTCGA..................................................................................................................................................................................................................................................................................2011.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC------------AGCAGCAGCA---GGGCCA.................................................................2080.131010000
........AGCAG--------------------------------------------------------------------------CTCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GC.......................................................................................................................................................................................................................................................................................................1880.131100000
..................................................................................................................................................................................................................................................................................................................................................................................CATCAGC-----------------------------AGCAGGAGCAGC..............................................................................................................................................................................1990.111001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC------------AGCAGCAGCA---GGGC...................................................................18200.102200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAACAGCA------------------------GCAGCAGC.....................................................................................................................22140.071010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------ACCATCAGC------------AGCAGCAGCA---.......................................................................20200.051010000
droAna3
C-AGCAGCAACAC--------------------------------------------------------------------------CACCAGCAGTGG---GG--CAGCCAGCAC-ATGGCCGCCATGCAGCAGCAGCAGCAGGCGGCGGCGG-----------------------------------------C------------------------------------------------------------C------------------------------CA------ACAGCAGCAGCAGCAAGCCCAG-----------------------------------------------CA---------GC------------AGGCGGCGGC---CCAA-----------CAACAACAGCAGC---AACAGCAA--------------GCAGCGCC-------------------------------GC------------AACAGCAGC---------AGGCAGCCATGCTGCAGG------C----------ACAGCAGCAAC-----ATCACCAGCAA--CASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................A------ACAGCAGCAGCAGCAAGC.......................................................................................................................................................................................................................................................................................1941.506240000
.........................................................................................................................................GCAGCAGGCGGCGGCGG-----------------------------------------C------------------------------------------------------------C------------------------------CA------AC.......................................................................................................................................................................................................................................................................................................2311.001100000
.............................................................................................................................CATGCAGCAGCAGCAGCAGGCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
................................................................................................................................................................................................................................................................................................................GCAGCAAGCCCAG-----------------------------------------------CA---------GC------------AGGCGGC....................................................................................................................................................................................................2411.001100000
......GCAACAC--------------------------------------------------------------------------CACCAGCAGTGG---GG--C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGCCATGCTGCAGG------C----------ACAGC..........................2411.001001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGCCATGCTGCAGG------C----------ACAGCA.........................2511.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGG------C----------ACAGCAGCAAC-----ATCACCAGC......2711.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGC---AACAGCAA--------------GCAGCGC..................................................................................................................................2411.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGC---AACAGCAA--------------GCAGCGCC-------------------------------..................................................................................................2611.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------------GC------------AACAGCAGC---------AGGCAGCCATGCT.....................................................2511.001010000
............................................................................................................................................GCAGGCGGCGGCGG-----------------------------------------C------------------------------------------------------------C------------------------------CA------ACA......................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................AGCAGCAAGCCCAG-----------------------------------------------CA---------GC------------AGGC.......................................................................................................................................................................................................2211.001010000
......................................................................................................................TGGCCGCCATGCAGCAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGC---AACAGCAA--------------GCAGCGCC-------------------------------GC------------AAC.................................................................................2911.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA--------------GCAGCGCC-------------------------------GC------------AACAGCAGC---------A.................................................................2411.001000001
...............................................................................................................................................GGCGGCGGCGG-----------------------------------------C------------------------------------------------------------C------------------------------CA------ACAGC....................................................................................................................................................................................................................................................................................................2020.501010000
................................................................................................................................................................................................................................................................................................A------ACAGCAGCAGCAGCAAG........................................................................................................................................................................................................................................................................................1870.433120000
........................................................................................................................................AGCAGCAGGCGGCGGCGG-----------------------------------------C------------------------------------------------------------................................................................................................................................................................................................................................................................................................................................................1930.331010000
...............................................................................................................................................................................................................................................................................................CA------ACAGCAGCAGCAGCAAG........................................................................................................................................................................................................................................................................................1970.292110000
...............................................................................................................................................................................................................................................................................................CA------ACAGCAGCAGCAGCAAGC.......................................................................................................................................................................................................................................................................................2040.251001000
...................................................................................................................................................................................................................................................................................................................................................................................................................CAA-----------CAACAACAGCAGC---AACAGC.........................................................................................................................................................22170.061010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................A-----------CAACAACAGCAGC---AACAGCA........................................................................................................................................................21180.061010000
...................................................................................................................................................................................................................................................................................................................................................................................................................CAA-----------CAACAACAGCAGC---AAC............................................................................................................................................................19200.051000001
droBip1
C-AGCAACAGCTC--------------------------------------------------------------------------CA---A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCATCAGTTGCTGCAGCTGTCCATTCAACAGGCGGCGCACCATCAGCAGCAGGAGCAGCATC-----GCCAACAGCAGCA---------------AC--------------AACAGCAGCAGC---------------AACAACAGCA------------------------GCAGCACCAACAGCAGCAGCAGCACCATC------------AGCAACAGCA---AGGCCA--------TC-CACAGGCA---CCACCGCC----------GCAGC-----AGCAACAGCAGC-CASizeHit CountTotal NormTotal
No Reads
droKik1
C-AGCAACAACAG--------------------------------------------------------------------------CATCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCAGCAACAACAGCATTTACAGCAGCAGCAGCAGCA------------------------------G--CATTTACAGCAGC-----------------------------AGCAGCAACAGCATCTACAGCAGCAGCAGCAACATCACCAGCAGCAACAACAACAGCA---TCTACAGCAGC---------AACAGCAGC------------------------------A--------GC-TGCAGCAACATCTACAGCA----------GCAAC-----AGCAGCAGCATCATCSizeHit CountTotal NormTotal
No Reads
droFic1
C-AGCAGCAGTTG--------------------------------------------------------------------------CAGCAGC--------AG--CAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTGCTGCAGCTGTCCATCCAGCAGGCGGCGCATCACCACCAGCAGGAGCAGCACC-----GCCA------------------------GCAGC---AGCAGCAG-----------------------------CAACACCA---GCA------------------GCAGCAACAACAGCAGCAGCATCACCAGC------------AGCAACAGCA---GGGCCA--------TC-CGCAGGCC---CCGCCGCC-------------GC-----AGCAGCAGCAA--CASizeHit CountTotal NormTotal
No Reads
droEle1
GCAGCATCTGACC---AAG---------------------------------------------------------------CAGCA-----GC---AGAGCAG--CATC-CAGAC-GCAGCTCT-CCCAGATCAGC-------GCTGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGC------------------------------C--CATCACCAACAGCAACAGCAGCAACAACAACAGCA---GCAG--------------------------CAACAACAACA------------------------GCAGCAGCAAC---------AGCAACAACAGCAGCAGCAACAACAACAGCA------------------------GGC------------------------AGCAGCCAAGCACCAGCAG--CASizeHit CountTotal NormTotal
No Reads
droRho1
C-AGCAGCTGCCG--------------------------------------------------------------------------CC-----------------CAGC-AGCAG-GCAGCCCA------------GCAACAAGCGGCGGCCG-----------------------------------------CCCACCAGCAACACCAGCAGCAAGTGGCCGCCCAGCATCAGCAGCAGGCTGCGGTGGCCGCCCATCAGCAGCAGCAACAGCAGTTACAGCAGCA------GCAGCAACTGCTGCAGTTGTCCATCCAGCAGGCGGCGCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCA----------TCAAC-----AGGAGCAGCAC--CGSizeHit CountTotal NormTotal
No Reads
droBia1
C-TGCACCTGGCC---ACGCCGCACCAGATGGTCGCCGCGGGC----------------GGTTCGCCGGTG--ATGCTCCACCAGCA-----GC--------AG--CAGC-AG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCAGCAACAGCAGCAA--------------------------------------------------------CATCAGCAGC-----------------------------AGCAGCAGCAGCAC---------------------CA---GCAGCAGCAGCAGCACCTGCAACAGCAGCAAC---------ACCACCAAC------------A----------------------------------------CCTTCACCAGCAATTCGGGCAGC-----AGCAGCAGCAG--CASizeHit CountTotal NormTotal
No Reads
droTak1
C-AACAGCAGTTG--------------------------------------------------------------------------CA---G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCAGCAACTCCTGCAGTTGTCCATCCAGCAGGCGGCTCACCATCATCAGCAGGAGCAGCATC-----GCCA------------------------GCAGC---AGCAGCAG-----------------------------CAACACCA---GCAGCAGCAACAGCA------GCAGCAGCAGC---------ATCACCAGC------------AGCAACAGCA---GGGTCA--------TC-CTCAGGCGCC---GCCGCC----A------CAGC-----AGCAACAGCAGCCGCSizeHit CountTotal NormTotal
No Reads
droEug1
C-AGCAACAGGCCGCCG-----CAG---------------------------------------------------------CAGCT-----GC--------TGCCCAAC-AGCAA-GCAGCCCA------------GCAACAGGCGGCTGCTG-----------------------------------------CACATCAGCAGCATCAGCAACAAGTAGCCGCCCAGCATCAGCAACAGGCCGCAGTGGCTGCCCATCAGCAGCAGCAACAGCAGTTGCAGCAGCA------GCAACAACTGCTGCAGTTGTCCATCCAGCAGGCAGCTCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCA----------TCAGC-----AGGAGCAGCAT--CGSizeHit CountTotal NormTotal
No Reads
dm3
C-AGTGTCTCGCGGACAAG---------------------------------------------------------------TGGA-----------AGTGCCG--TAAC-TGAATCGCTGCCCA-GCCATGATCTC------CACTCTGA-------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCA----------------------------------------------------------------GCCAACAGCAGCA---------------GC--------------AACAGCAGCAGCAACAGCAGCAGCAGCAGCAACACCA------------------------ACAGCAGCAGC---------ATC---AGC------------AGCAACAGCA---AC---G--------GA-CGCAGACAACACCTCAGCC-------------GA-----CGCAGCAGCAA--CASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
C-AGTGTCTCGCGGACAAG---------------------------------------------------------------TGGA-----------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................TC------CACTCTGA-------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCA----------------------------------------------------------------GTGC..................................................................................................................................................................................................................................2221.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCC-------------GA-----CGCAGCAGCAA--..1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGACAACACCTCAGCC-------------GA-----CGCAGC.........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------GA-CGCAGACAACACCTCAGC....................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TCTGA-------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCA----------------------------------------------------------------GCCAA.................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACACCA------------------------ACAGCAGCAGC---------.........................................................................................................20150.871300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACACCA------------------------ACAGCAGC.....................................................................................................................2450.6030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACACCA------------------------ACAGC........................................................................................................................20110.3640000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACCA------------------------ACAGCAGCAGC---------AT.......................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACACCA------------------------ACAGCAGC.....................................................................................................................22140.2940000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACACCA------------------------ACAGCAGC.....................................................................................................................21140.2130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAGCAACA........................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACACCA------------------------ACAGCAGCAGC---------.........................................................................................................2660.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACACCA------------------------ACAGCAGT.....................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000100000000000000000000000000000000000000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC---------ATC---AGC------------AGCAAC..............................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACACCA------------------------.............................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACACCA------------------------ACAGCAGC.....................................................................................................................2370.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACACCA------------------------ACAGCAG......................................................................................................................21150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACACCA------------------------ACAGCAGCAGC---------A........................................................................................................21150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACACCA------------------------ACAGCAGCAG...................................................................................................................19150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
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...................................................................................................................................................................................................................................................................................................................................................................................AGCA---------------GC--------------AACAGCAGCAGCAACAGCAG......................................................................................................................................................................26190.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................CAGCA---------------GC--------------AACAGCAGCAGCAA............................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------ATC---AGC------------AGCAACAGC...........................................................................18110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACACCA------------------------ACAGCAGCAGC---------.........................................................................................................21120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGC---------ATC---AGC------------AGCA................................................................................21120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACACCA------------------------ACAGCAGCA....................................................................................................................23140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................................................................................................................................................................................................................................................................................................................................................................GCA---------------GC--------------AACAGCAGCAGCAACAGCAGCA....................................................................................................................................................................27180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------------ACAGCAGCAGC---------ATC---AGC------------A...................................................................................20190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GCA---------------GC--------------AACAGCAGCAGCAACAGCAGC.....................................................................................................................................................................26190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACAGCAGCA....................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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....................................................................................................................................................................................................................................................................................................................................................................................GCA---------------GC--------------AACAGCAGCAGCA.............................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------ACAGCAGCAGC---------ATC---AGC------------....................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------------ACAGCAGCAGC---------ATC---AGC------------....................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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............................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCA---------------GC--------------AACAGCAGC.................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CA---------------GC--------------AACAGCAGCAGCAACAGCAGC.....................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CA---------------GC--------------AACAGCAGCAGCAAC...........................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................C--------------AACAGCAGCAGCAACAGCAGC.....................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACACCA------------------------ACAGC........................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAGCAG......................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCAGCA..............................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
C-AGTTGCACCAA---------------------------------------------------------------------CAGCA-----GC--------CG--CAGC-AACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCAGCAACCACTG------------ACGCAGTTGCAGCAACCACAGTTAAGGGAAC------GCGAG--CACCACCAACAGCAGCAGCAGCAGCAGCAGATGAT---GCAG--------------------------CAACCACAGCA------------------------GCAGCAGCAGA---------TGCAGCAGCCGCAGCAGCAACT--------------GCCACACAGCCATCACG----CC---CTAATGCA----------GCAAT-----CGCAGCAGCAG--CASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................AACCACAGTTAAGGG....................................................................................................................................................................................................................................................1511.00100000001000000000
...................................................................................AGCA-----GC--------CG--CAGC-AACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
............................................................................................................GC-AACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCAGC....................................................................................................................................................................................................................................................................................................17200.05100000000001000000
droSec2
C-CA-----GGTGGCA--T-------------------CGAGCACCGGAACTCCAGCCCCATCCGCCGGCGGCATTCACCAGCAGCA-----CC--------AG--CAGC-AGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCA------GCACCAGCAGCAGCAGCACCAG-----------------------------------------------CA------------------------GCAAC---AGCAGCAG--------CAACACCAACATCAGCA---------------GCAGCAACAGCAGCACCTTCAGCAGCAGCAAC---------ACCACC---------------------------------A--------GC-TGCAGCAGC---A----------ACAGCAGCAGC-----AGCAGCATCAA--CASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................CA------------------------GCAAC---AGCAGCAG--------CAA...............................................................................................................................................................................18200.1020020
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCAGCA---------------GCAGCAACAG........................................................................................................................................21110.0910001
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCA---------------GCAGCAACAGCAGCA...................................................................................................................................22130.0810010
......................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCAGCA---------------GCAGCAACA.........................................................................................................................................18200.0511000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGC---A----------ACAGCAGCA......................19200.0510010
................................................................................................................................................................................................................................................................................................A------GCACCAGCAGCAGCAGC........................................................................................................................................................................................................................................................................................18200.0510010
droYak3
C-ACTACCAGCAG--------------------------------------------------------------------------CACTATC--------CG--CAGC-AGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCTCCAGCAGCAG---------------------CAGCAGCACGC------------------------------C--CAGCAGCAACA---------------------------CC--AGCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCA------------------------ACAGCAGCAGC---------AAC---AGC------------AGCAGCAGCACTGGGACTACTATGCCAGGCAGC------AGCA----------GCAACATCAAC-----AGCAGCAGCAG--CASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACATCAGCAGCAGCA.......................................................................................................................................................................19200.10202000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAGCAGCAGC......................................................................................................................................................25200.10200000000002
...................................................................................................................................................................................................................................................................................................................................................................................................................C--AGCAACATCAGCAGCAGCA.......................................................................................................................................................................20200.10200000020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA----------GCAACATCAAC-----AGCAGCA........21160.06101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCAAC-----AGCAGCAGCA.....20180.06100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCAGCAGCAGCAGCAGCA..............................................................................................................................................................23200.05100010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC---------AAC---AGC------------AGCAGCAGCA..........................................................................24200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------------ACAGCAGCAGC---------AAC---AGC------------AGCAGCA.............................................................................26200.05100010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATCAGCAGCAGCAGC.....................................................................................................................................................................20200.05100000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCAGCAGCAGCAGCAGCAGCA........................................................................................................................................................28200.05100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------------ACAGCAGCAGC---------AAC---AGC------------....................................................................................19200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA------------------------ACAGCA.......................................................................................................................19200.05100010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC---------AAC---AGC------------AGCAGCA.............................................................................19200.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC---------AAC---AGC------------AGCAGCAGCA..........................................................................23200.05100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA------------------------ACAGCAGCAGC---------AAC---AGC------------....................................................................................27200.05100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA------------------------ACAGCAGC.....................................................................................................................21200.05101000000000
droEre2
C-CATAC-AGTTACACCAA---------------------------------------------------------------CAGCA-----GC--------CG--CAGC-AGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCAGCAGCAGCCACTG---------ACGCAGTTGCAGCAACCACAGCTAAGGGAAC------GCGAA--CACCACCAGCAGCAGCAGCAGCAGCAGCATATGAT---GCAG--------------------------CAACCACAGCA------------------------GCAGCAGCAGA---------TGCAGCAGCCGCAGCAGCAACT--------------GCCACACAGCCATCATG----CC---CTAATGCA----------GCAAT-----CACAGCAGCAG--CASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCATATGAT---GC............................................................................................................................................................................................2112.0020000020
...ATAC-AGTTACACCAA---------------------------------------------------------------CAGCA-----GC--------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
............................................................................................................GC-AGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCAGCAGCAGCCACT..........................................................................................................................................................................................................................................................................................2711.0011000000
...............................................................................................................AGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCAGCAGCAGCC.............................................................................................................................................................................................................................................................................................22150.0710100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------GCAGCAGCAGA---------TGCAGC...................................................................................................18160.0611000000
................................................................................................................................................................................................................................................................................................................................................................................ACCAGCAGCAGCAGCAGCAG............................................................................................................................................................................................................20200.0510100000
..............................................................................................................................................................................................................................................................................................................................................................................CCACCAGCAGCAGCAGCAGC..............................................................................................................................................................................................................20200.0510001000
...............................................................................................................................................................................................................................................................................................................................................................................CACCAGCAGCAGCAGCAGCA.............................................................................................................................................................................................................20200.0510001000
......................................................................................................CG--CAGC-AGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA------GCA......................................................................................................................................................................................................................................................................................................19200.0510000010
...............................................................................................................................................................................................................................................................................................................................................................................CACCAGCAGCAGCAGCAGCAGCA..........................................................................................................................................................................................................23200.0510000100
............................................................................................................................................................................................................................................................................................................................................................................CACCACCAGCAGCAGCAGC.................................................................................................................................................................................................................19200.0511000000
..............................................................................................................................................................................................................................................................................................................................................................................CCACCAGCAGCAGCAGCAGCA.............................................................................................................................................................................................................21200.0510000010

Generated: 05/18/2015 at 02:46 AM